External Email - Use Caution

On 8/9/2023 5:03 AM, inbal paran wrote:

External Email - Use Caution

Dear FreeSurfer developers,

Thank you for your response to my previous questions, I have a few more (I'm inexperienced with both Freesurfer and Linux):

1. Can I visualize my results after running mri_glmfit by using Freeview, such that the image shows cortical brain regions as well as subcortical brain regions on both hemispheres? If yes - how can I do that?

The vlrmerge script can take maps from lh, rh, and subcortex and merge them into one map.

2. Is there a text file of the glmfit results that includes the correlation parameters, cluster size, significance/p-values? If yes - where can I find it? If not - how can I generate one?

correlation and sig are maps in the output folder for each contrast. clustersize and clusterwise correction are computed by mri_glmfit-sim. Once you have the clusters, you can run mri_segstats using the ocn file and the correlation map to get means in each cluster

Thank you very much

Inbal

--

Inbal Paran, M.PT.

Schwartz Movement analysis & Rehabilitation Laboratory, Physical Therapy Department, Recanati School for Community Health Professions.
Faculty of Health Sciences at Ben-Gurion University of the Negev.
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