Dear FreeSurfers,
I have been trying to get SynthSR up and running and have come to the realisation there is a conflict with the current tools and the new apple chips (macOS Monterey,
Apple M1 chip, 16GB).
I have tried the workaround via this thread on the mailing list to no avail (https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg73091.html).
I then tried to install homebrew, conda, and run a virtual environment which allowed me to download tensorflow. The steps I followed with comments are attached. However, now there is an issue when calling mri_synth as follows:
File "/Applications/freesurfer/dev/python/scripts/mri_synthsr", line 18, in <module>
import tensorflow as tf
ModuleNotFoundError: No module named 'tensorflow'
I am not sure if there is a disconnect in where I have installed tensorflow such that mri_synthsr is unable to locate it. If anyone has found a workaround for this they would be willing
to share it would be greatly appreciated!
Thanks,
Annabel
Annabel Sorby-Adams, PhD
Fulbright Postdoctoral Research Fellow
Department of Neurology
Massachusetts General Hospital
Lunder 6 55 Fruit Street, Boston MA
Harvard Medical School
E asorby-adams@mgh.harvard.edu
T +1 617 251 6465