Oh, sorry, I didn’t realize that

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Douglas N. Greve
Sent: Saturday, August 29, 2020 11:30 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] How to re-run recon-all

For version 7, -make all does not work anymore :(

On 8/28/2020 4:26 PM, Camargo, Aldo wrote:

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Thanks a lot Bruce,

Aldo

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From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Fischl, Bruce <BFISCHL@mgh.harvard.edu>
Sent: Friday, August 28, 2020 4:15 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] How to re-run recon-all

Hi Aldo

You should be able to use recon-all -make all … to run anything that did not complete. You might have to specify the -no-isrunning (or something like that) flag if it didn’t terminate cleanly

Cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Camargo, Aldo
Sent: Friday, August 28, 2020 3:11 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] How to re-run recon-all

        External Email - Use Caution        

Hi Freeserufer experts:

By mistake I cancel the recon-all when it was about 3 hours of processing. There is a way to re-run the recon-all and that continues where it was stopped ?

Thanks a lot,

Aldo

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