Hello, i have been trying to regenerate the surface on one of my subjects but keep having a problem where the terminal is saying there is a missing file name. Do you have any suggestions please?
Kind regards, Michael
bash-4.1$ freesurfer_setup_freeview
-------- freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer_v6.0.0
FSFAST_HOME /usr/local/freesurfer_v6.0.0/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /usr/local/freesurfer_v6.0.0/subjects
MNI_DIR /usr/local/freesurfer_v6.0.0/mni
FSL_DIR /usr/local/fsl
bash-4.1$ cd /projects/pbic1030/Michael/subjects/Subj5/Subj5
bash-4.1$ recon-all -autorecon-pial -s Subj5
if: Missing file name.
bash-4.1$