I've been doing all of my analysis with surface images and now I need to label my results.  I can annotate the visualization in tksurfer but I can't see an automated way to, say, generate a list of all areas with voxels with a value over some threshold.  I thought I might try going to the label files and using mri_label2vol followed by mri_vol2surf.  I'm registering all my surfaces using the icosahedron target and outputting in analyze format so I can import it into R.  I figured the best labels to use would be those from the fsaverage directory.  I converted those into volume files, but in order to convert them into surfaces, I need a .reg file.  I tried the sphere.reg files in the surf subdirectory, but mri_vol2surf didn't like that.  Using a .reg file for a volume registered to fsaverage seems redundant, but I see no way around it.  Is there?  Or am I doing this all wrong and there is a much better way to label my surfaces?

Thanks,
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|  Alessandro Gagliardi
|  Rutgers University Mind Brain Analysis
|  Integrative Neuroscience Program
|   alessandro@gagliardi.name
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