Dear All,

I ran the following script:

#!/bin/bash
SUBJECTS_DIR=/mnt/hgfs/DBSI/volumetric/MGZ
recon-all -i /mnt/hgfs/DBSI/volumetric/Case022/Case022_tp2/3-1.dcm -subject case022_tp2 -all

and got the error below at the end. Could anybody please let me know how to fix it.

Thank you,

Mahmoud

Reporting on  70 segmentations
mri_segstats done
/mnt/hgfs/DBSI/volumetric/MGZ/case022_tp2/label
#--------------------------------------------
#@# BA Labels lh Tue Sep 16 19:26:47 PDT 2014
INFO: fsaverage subject does not exist in SUBJECTS_DIR
INFO: Creating symlink to fsaverage subject...

 cd /mnt/hgfs/DBSI/volumetric/MGZ; ln -s /usr/local/freesurfer/subjects/fsaverage; cd -

ln: failed to create symbolic link './fsaverage': Operation not supported

 mri_label2label --srcsubject fsaverage --srclabel /mnt/hgfs/DBSI/volumetric/MGZ/fsaverage/label/lh.BA1.label --trgsubject case022_tp2 --trglabel ./lh.BA1.label --hemi lh --regmethod surface

No such file or directory
mri_label2label: could not open label file /mnt/hgfs/DBSI/volumetric/MGZ/fsaverage/label/lh.BA1.label

srclabel = /mnt/hgfs/DBSI/volumetric/MGZ/fsaverage/label/lh.BA1.label
srcsubject = fsaverage
trgsubject = case022_tp2
trglabel = ./lh.BA1.label
regmethod = surface

srchemi = lh
trghemi = lh
trgsurface = white
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
usehash = 1
Use ProjAbs  = 0, 0
Use ProjFrac = 0, 0
DoPaint 0

SUBJECTS_DIR    /mnt/hgfs/DBSI/volumetric/MGZ
FREESURFER_HOME /usr/local/freesurfer
Loading source label.
Invalid argument
ERROR reading /mnt/hgfs/DBSI/volumetric/MGZ/fsaverage/label/lh.BA1.label
Linux ubuntu 3.13.0-35-generic #62-Ubuntu SMP Fri Aug 15 01:58:42 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s case022_tp2 exited with ERRORS at Tue Sep 16 19:26:47 PDT 2014

For more details, see the log file /mnt/hgfs/DBSI/volumetric/MGZ/case022_tp2/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

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