Dear Douglas,

Please see below :

2015-12-15 18:37 GMT+01:00 Douglas N Greve <greve@nmr.mgh.harvard.edu>:


On 12/15/2015 04:46 AM, Matthieu Vanhoutte wrote:
> Dear experts,
>
> Could anyone answer to my questions below ?
>
> Thanks !
>
> Best regards,
> Matthieu
>
> 2015-12-10 10:10 GMT+01:00 Matthieu Vanhoutte
> <matthieuvanhoutte@gmail.com <mailto:matthieuvanhoutte@gmail.com>>:
>
>     Dear FS experts,
>
>     1) First Is it possible to use the partial volume correction
>     provided in the v6 beta version of FreeSurfer despite the fact
>     that recon-all have been done for all subjects with the v5.3 ?
>
Yes

Great ! but isn't it a problem for computing rSUV with pons as reference structure since brainstem isn't sub-segmented in the version 5.3 of recon-all ?
 
>
>
>     2) Does this method supply an intensity normalisation for PET images ?
>
What do you mean by intensity normalization? For uptake analysis, people
usually use SUV (standard uptake values where the whole image is scaled
by a value related to the injection mass and subject weight) or you
choose a reference structure to scale by (often called rSUV for
relative). By default mri_gtmpvc uses pons, but you can choose any
structure you want with the --rescale flag 
>
>
>     Best regards,
>     Matthieu
>
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--

Best regards,
Matthieu
 
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.