I'm not sure. You can try just passing the skull stripped as input to recon-all. The talairach transform will probably be off, but the rest might work

On 4/17/2022 9:09 PM, Muhammed Görünen wrote:

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Hi,

How can I run a recon process if I have just skull stripted data? I need surface and annot files. Does the process need the volume files produced before the skull-stripting process? Thanks in advance.

Best,

--Muhammed
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