Hi Freesurfer team,

I am transforming several adjacent surface labels into volume ROIs, using mri_label2vol. When doing so, there seems to be some possibly unavoidable overlap in a small number of voxels in the volume ROIs. Is there any way to avoid these labels from overlapping when transformed into the volume? I see that mri_label2vol takes an --annot flag, would this help in avoiding overlap in the outputs?

Otherwise, I can remove the overlapping voxels int he nifti file outputs, but I was wondering if the algorithm had any options to do this as part of the surface-to-volume transform.

Thanks so much!

Jacob

Jacob Miller
Graduate Student, D'Esposito Lab 
Helen Wills Neuroscience Institute (HWNI) 
University of California, Berkeley

https://despolab.berkeley.edu/