Hi Jiook,

That is a bit weird. What was the error that you got on the left hemisphere?

In any case, 10 mins sounds about right. Does the output segmentation look ok?

Cheers,

Eugenio

Juan Eugenio Iglesias

Honorary Senior Research Associate
Translational Imaging Group
University College London
and
Postdoctoral researcher BCBL

http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/

www.bcbl.eu

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From: "Jiook Cha" <cha.jiook@gmail.com>
To: "Eugenio Iglesias" <e.iglesias@bcbl.eu>, "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
Sent: Saturday, May 21, 2016 1:33:59 PM
Subject: hippocampal subfields analysis took 10 min

Dear Eugenio,

I had to run the hippocampal subfield segmentation analysis in Freesurfer v6 manually by running segmentSF_T1.sh program. When I call it through recon-all, it only processed the left hemisphere but not the right. The issue is that running segmentSF only took 10 min per hemisphere. I didn't use multicores. Although the analysis resulted in all the files correctly, I am just concerned if running this manually completed the analysis prematurely.

Sincerely,

Jiook

ᐧ