Dear Codrin,

There was a bug incode, that caused mri_easyreg (and mri_synthseg, and mri_synthsr) to crash if absolute paths were not used. This is now fixed in the the development version.

Cheers,

/Eugenio

--

Juan Eugenio Iglesias

http://www.jeiglesias.com

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Codrin Mironiuc <codrinmironiuc@yahoo.ro>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, March 16, 2023 at 10:03 AM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Question on EasyReg package syntax

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Hi,

I have tried to use EasyReg.

I have tried to use the following syntax to generate the output of EasyReg and it didn't seem to work:

mri_easyreg --ref structural1.nii.gz --flo structural2.nii.gz --ref_seg segmentation_reference --flo_seg segmentation_float --ref_reg deformed_ref_image --flo_reg deformed_flo_image --fwd_field forward_field --bak_field backwards_field

Do you know what may be the issue?

Thanks so much!