Also are there any other QA programs that would enable me to easily visualize the outputs at various stages of Freesurfer recon-all?
Running recon_checker on:
Thu Mar 10 17:17:23 EST 2011
Checking Last Version Used:
/usr/analysis/bin/freesurfer/bin/recon-all
Checking ALL Versions Used:
/home/virtualuser/apps/freesurfer/bin/recon-all,
/usr/analysis/bin/freesurfer/bin/recon-all,
---
checking output files ...
Running command: /autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_output_file_checker -subjid Dykens_2250_3_1_freesurfer
---
/autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_output_file_checker: Command not found.
/autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_output_file_checker: Command not found.
---
checking step order ...
Running command: /autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_status_log_checker -subjid Dykens_2250_3_1_freesurfer
---
/autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_status_log_checker: Command not found.
/autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_status_log_checker: Command not found.
---
making snapshots ...
Running command: /autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/jlp_snapshots3.csh -subjid Dykens_2250_3_1_freesurfer -o QA.html
---
/autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/jlp_snapshots3.csh: Command not found.