But is that the right frame to use? I would check with whoever collected
the data and get it sorted out before diving into an analysis.

On 02/22/2016 02:34 PM, Marissa Pifer wrote:
> Bruce,
>
> I'm not sure why it has multiple frames. It was a spin echo, T1
> weighted structural MRI. I input the command you suggested and
> recon-all is running now.
>
> Thank you for your help!
>
> Marissa
>
> On Mon, Feb 22, 2016 at 12:24 PM, Bruce Fischl

> <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>> wrote:
>
>     Hi Marissa
>
>     why does it have multiple frames? What kind of acquisition was it?
>     If you know which frame is the correct one you can always extract
>     it, for example
>
>     cd /Users/marchaut/Documents/myprojects/SOARmaster/SOAR26-1/mri/orig
>     mv 001.mgz two_frames.mgz
>     mri_convert -nth 0 two_frames.mgz 001.mgz
>
>     Bruce
>
>
>     On Mon, 22 Feb 2016, Marissa Pifer wrote:
>
>         Hi freesurfers,
>         I am trying to run the recon-all command on a T1 weighted
>         structural image for one of my subjects and I keep getting
>         this error
>
>         "Checking for (invalid) multi-frame inputs...
>
>         ERROR: input(s) cannot have multiple frames!
>
>         /Users/marchaut/Documents/myprojects/SOARmaster/SOAR26-1/mri/orig/001.mgz
>         has 2 frames
>
>         Darwin Marcs-MacBook-Pro.local 13.4.0 Darwin Kernel Version
>         13.4.0: Sun Aug 17 19:50:11 PDT 2014;
>         root:xnu-2422.115.4~1/RELEASE_X86_64 x86_64
>
>
>         recon-all -s SOAR26-1 exited with ERRORS at Mon Feb 22
>         11:13:26 EST 2016"
>
>
>         I looked through the mailing list and saw that a few other
>         people have had this problem as well, and I tried some of the
>         solutions that were suggested but still have not been able to
>         get past this. I have run the recon-all command on all of the
>         other subjects in our data set, and none of them have this
>         problem. Not sure what is different about this scan.
>
>
>         Anyone run into this problem and were able to fix it?
>
>
>         Thanks in advance,
>
>
>         Marissa
>
>
>
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