Hi Talia, this is a Problem with x11 forwarding. Everything works fine if you use VNC instead. <div>Caspar <span></span><br><br>On Thursday, July 31, 2014, Talia Raney &lt;<a href="mailto:talia.raney@gmail.com">talia.raney@gmail.com</a>&gt; wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><br><div class="gmail_extra"><div><div dir="ltr">Hi,</div><div dir="ltr">What seems to be happening is that I insert this command: </div>
<div dir="ltr"><span> tkmedit subject_id brainmask.mgz rh.white -aux T1.mgz  -aux-surface lh.white -segmentation aseg.mgz $FREESURFER_HOME/FreeSurferColorLUT.txt</span></div>
<div><span>it should show me the subcortical segmentation overlayed with the pial, white, and orig surface lines shown. It no longer shows me this after I made some control points in the coronal view.</span></div><div>
<span><br></span></div><div dir="ltr"><div style="margin-top:7.68pt;margin-bottom:0pt;margin-left:0.38in;direction:ltr;word-break:normal"><img src="cid:ii_1478cd7e4a3421fe" alt="Inline image 1" width="522" height="544"><br>

</div><div style="margin-top:7.68pt;margin-bottom:0pt;margin-left:0.38in;word-break:normal">This is what should show</div><div style="margin-top:7.68pt;margin-bottom:0pt;margin-left:0.38in;word-break:normal"><img src="cid:ii_1478cd8fc8ec4dd5" alt="Inline image 2" width="355" height="544"><br>

</div></div></div>Why is this?</div><div class="gmail_extra">Talia<br><div class="gmail_quote">On Mon, Jul 28, 2014 at 10:40 AM, Talia Raney <span dir="ltr">&lt;<a href="javascript:_e(%7B%7D,&#39;cvml&#39;,&#39;talia.raney@gmail.com&#39;);" target="_blank">talia.raney@gmail.com</a>&gt;</span> wrote:<br>

<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Hi,<div>I&#39;m having issues with tkmedit. I&#39;m doing visual inspection and I checked tkregister to be sure that the white matter is outlined in the functional image. However, when I open tkmedit for surface and cortical segmentation, it doesn&#39;t show up the red and green lines that distinguish the boundaries of the grey and white matter. It had previously and I put a few control points but now it doesn&#39;t show up at all.</div>


<div>Why might this be and how can it be fixed?</div><div>Thanks!</div><span><font color="#888888"><div>Talia<br clear="all"><div><div dir="ltr"><br><div><div><br></div></div></div></div>
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