Hi Jinsong,

I have never seen this. Stable 5.3 is very stable and I doubt it is a bug. How did you process base and cross sectionals? Also with 5.3 ?

I would recommend to process cross and base with 5.3, then re-run the long and see if you can replicate this problem. Let me know what happens.

Best, Martin

> On Jul 20, 2016, at 12:48 AM, Jinsong Tang <tangjinsonghn@gmail.com> wrote:
>
> Hi all,
>
> I found an error during the longitudinal -long stream:
>
> recon-all -long P1001-2 P1001 -all
> ......
>
> FREESURFER_HOME /space/raid/fmri/freesurfer
> Actual FREESURFER_HOME /space/raid/fmri/freesurfer
> build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
> Linux funcserv1 3.16.7-35-desktop #1 SMP PREEMPT Sun Feb 7 17:32:21 UTC 2016 (832c776) x86_64 x86_64 x86_64 GNU/Linux
> ......
>
> mris_spherical_average -erode 1 -orig white -t 0.4 -o P1001-2.long.P1001 label lh.entorhinal lh sphere.reg lh.EC_average lh.entorhinal_exvivo.label
>
> painting output onto subject P1001-2.long.P1001.
> processing subject lh.EC_average...
> MRISread(/space/raid7/data/london/data/mri/other/jinsong/oneil/ChildOCD/output/lh.EC_average/surf/lh.sphere.reg): could not open file
> eroding label 1 times before writing
> thresholding label stat at 0.400 before writing
> Not a directory
> mris_spherical_average: could not read surface file /space/raid7/data/london/data/mri/other/jinsong/oneil/ChildOCD/output/lh.EC_average/surf/lh.sphere.reg
> Not a directory
> Linux funcserv1 3.16.7-35-desktop #1 SMP PREEMPT Sun Feb 7 17:32:21 UTC 2016 (832c776) x86_64 x86_64 x86_64 GNU/Linux
>
> recon-all -s P1001-2.long.P1001 exited with ERRORS at Fri Jul  8 21:33:02 PDT 2016
>
>
> Please help me fix this error!
>
> Thanks and best regards,
>
> Jinsong
>
>

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