External Email - Use Caution        

Hello Kiyotaka,

You may not need to be concerned about that warning.  You can suppress it by setting the following in your shell environment.

$ export NO_MINC=1

For Ubuntu linux, if you have sudo/root/admin privileges, then you could try running the installer file instead of using the tar file, i.e.,

$ sudo apt-get install ./freesurfer_7.2.0_amd64.deb

- R.

On Jul 19, 2021, at 21:08, Kiyotaka Nemoto <kiyotaka@nemotos.net> wrote:

        External Email - Use Caution        


Dear Doug,

Thank you for the announcement of 7.2.0 update.
I updated using freesurfer-linux-ubuntu18_amd64.tar.gz and noticed that the 'mni' directory is missing.

As a result, now the shell shows warning about MNI

=====
-------- freesurfer-linux-ubuntu18_x86_64-7.2.0-20210714-aa8f76b --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME   /usr/local/freesurfer/7.2.0
FSFAST_HOME       /usr/local/freesurfer/7.2.0/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR      /home/username/freesurfer/7.2.0/subjects
WARNING: MINC_BIN_DIR not defined.
         'nu_correct' and other MINC tools
         are used by some Freesurfer utilities.
         Set NO_MINC to suppress this warning.
WARNING: MINC_LIB_DIR not defined.
         Some Freesurfer utilities rely on the
         MINC toolkit libraries.
         Set NO_MINC to suppress this warning.
FSL_DIR           /usr/local/fsl
=====


Is it intended?

Best regards,

Kiyotaka



On Tue, Jul 20, 2021 at 7:45 AM Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:
We are  please to announce version 7.2. Mostly bug fixes and 
behind-the-scenes enhancements. But there are a few new goodies and one 
new "known issue" about defacing. Check out
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes
doug


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-- 
Kiyotaka Nemoto, M.D., Ph.D.
Associate Professor
Department of Psychiatry
Division of Clinical Medicine, Faculty of Medicine
University of Tsukuba
1-1-1Tennodai Tsukuba, Ibaraki 305-8575, Japan
E-mail: kiyotaka@nemotos.net
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