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I have them already ask masks in subject space, but I am doing connectivity analysis on a few of them and would need the MNI coordinates of the centroids for  visualizing those results.

Thanks!



On Fri, Feb 28, 2020 at 10:29 AM Glasser, Matthew <glasserm@wustl.edu> wrote:

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Why not represent thalamic nuclei as the actual masks?  Thalamic nuclei are not single points. 

 

Matt.

 

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Corinna Bauer <corinnab83@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Friday, February 28, 2020 at 9:26 AM
To: Mailing Freesurfer List <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] MNI coordinates from Thalamic nuclei

 

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Hi all,

Is there a way to obtain the MNI coordinates for the thalamic nuclei?

 

Thanks

 

 

Corinna

 

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