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Hi Kate,

The Desikan ROI volumes should be in the ?h.aparc.stats file after you run recon-all. See Section 4.2 here (https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/AnatomicalROI#IndividualStatsfiles).

Regards,

Thomas

On Sun, Mar 15, 2020 at 7:22 PM Kate Marvel <kmarvel54@gmail.com> wrote:

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Hi Freesurfer community,

I would like to know how to compute the 

ROI volumes of grey matter using Desikan atlas? Is there a threshold value set for this? is it 0.2?

Thanks

kate

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