Hi Maarten,

Thanks for your question. Please, reach out to me directly with the details as my answer might depend on those.

Lilla
From: Maarten Naeyaert <Maarten.Naeyaert@uzbrussel.be>
Sent: Thursday, April 9, 2026 10:17 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] custom ROI in infant_recon_all
 

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Hi freesurfer developers,

We're infant_recon_all (in freesurfer 8.1.0) on a dataset consisting of newborns, but would like to include a custom ROI not yet included in the infant atlas. Is there way to do this?

Best regards,
Maarten Naeyaert

--------------------------------------------------------
Maarten Naeyaert, PhD
MR physicist

Department of Radiology UZ-Brussel
Vrije Universiteit Brussel (VUB)
Laarbeeklaan 101
1090 Brussels
Belgium
Tel: +32 (2) 477 53 88
Maarten.Naeyaert@uzbrussel.be

Bureau: MRI 1-2 (routenummer: 950)