try mri_label2vol

cheers
Bruce
On Mon, 13 May 2013, lujiao luo wrote:

Hello Bruce,
Thanks so much for your reply.

Yes, you are right,  I've obtained the  lh.V1.label. But I couldn't figure out how to create a roi.nii.gz mask by using the
lhV1.lable file or lhBA.annot, and then I can use it as a seed for my fiber tracking.

Yours Lulu.



2013/5/13 Bruce Fischl <fischl@nmr.mgh.harvard.edu>
      Hi Lulu

      what version are you running? If it's a newer one you should have label files in the label subdir named
      [lr]h.V1.label and [lr]h.V1.thresh.label (a thresholded version of the first one).

      cheers
      Bruce


      On Mon, 13 May 2013, lujiao luo wrote:

            Hello, experts,
            I am trying to obtain a V1 mask and use it as a seed of my fiber tracking. But I do not know how to get
            the
            BA.nii.gz file, and I've obtained BA.ctab and lh.BA.annot files by using flag recon_all. Would someone
            give me
            some suggestions about this?

            Thanks so much for your  help!

            Yours Lulu




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