------------------------------
SUBJECT freesurfer
DATE Wed Jan  8 12:07:54 CST 2014
USER brainlab
HOST cerebrum.uwm.edu
PROCESSOR i386
OS Darwin
Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun  7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386
$Id: trac-preproc,v 1.46 2013/12/04 17:02:25 ayendiki Exp $
/Applications/Freesurfer5.3/bin/trac-preproc
PWD /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1096/data
CMD /Applications/Freesurfer5.3/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1096/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.97398.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1096/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1096/data//freesurfer/dmri/dtifit_FA.nii.gz --cptdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1096/data//freesurfer/dlabel/diff --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1096/data//freesurfer/dmri/xfms/mni2diff.bbr.mat --ncpts 5 --trunc