setenv('FS_QT_HOME',fullfile(fs,'lib','qt'));

setenv('QTLIBPATH',fullfile(fs,'lib','qt','lib'))

setenv('qtplugin',fullfile(fs,'lib','qt','plugins'))

setenv('vtk',fullfile(fs,'lib','vtk'))

lib=getenv('LD_LIBRARY_PATH');

qtlib=getenv('QTLIBPATH');

plugins=getenv('qtplugin');

setenv('LD_LIBRARY_PATH',strcat(lib,':',qtlib,':',plugins,fullfile(fs,'lib','vtk')))

if upper < fdrtreshold

    upper = fdrtreshold + 1;

fdrtreshold=num2str(fdrtreshold);upper=num2str(upper);

fdrtreshold=sprintf('%s,%s',fdrtreshold,upper);

leftcommand=sprintf('%s/%s/surf/lh.%s:annot=aparc.annot:annot_outline=1:overlay=%s:overlay_threshold=%s',SUBJECTS_DIR,template,surface,leftmgh,fdrtreshold);

rightcommand=sprintf('%s/%s/surf/rh.%s:annot=aparc.annot:annot_outline=1:overlay=%s:overlay_threshold=%s ',SUBJECTS_DIR,template,surface,rightmgh,fdrtreshold);

freeview='freeview';

commandline=sprintf('%s -f %s -f %s -viewport 3d &',freeview,leftcommand,rightcommand);