Hello all,
I was trying to run qcache on some previously processed Freesurfer data from a colleague, but ran into some issues with missing files and wondered how best to proceed.
Details:
-The data was processed with (Freesurfer) v4.5.0 and I would ideally like to not reprocess it with a newer version (to keep in concordance with past published work, and also it's a large number of subjects, n=800+).
-The qcache flag was not used with the data previously (to my knowledge), so I was attempting to run this command: recon-all -s $subj -qcache
-When I try that command, I get an error regarding a missing lh.white.K file.
I've uploaded the log file here:
https://www.dropbox.com/s/94mnsy7wrps5ce2/recon-all.log?dl=0I wondered if it was possible to complete qcache with the data as is? I searched on the list previously and saw one or two other folks had run into this issues; I, however, didn't see a final solution to things. Any thoughts or suggestions are greatly appreciated! Thanks much!
Best,
Jamie.
--
Jamie Hanson
Assistant Professor, Psychology
Research Scientist, Learning Research and Development Center
University of Pittsburgh
Personal website:
jamiehanson.org