2009/10/14 Bruce Fischl <fischl@nmr.mgh.harvard.edu>

Hi Giacomo,

we don't write out the probabilities by default. To get them you would need to add -write_probs <prob volume name> to the mri_ca_label command line (you can find it in recon-all.log for each subject).

cheers
Bruce

On Wed, 14 Oct 2009, Giacomo Mandruzzato wrote:

---------- Forwarded message ----------
From: Giacomo Mandruzzato <giacomo.mandru@gmail.com>
Date: 2009/10/14
Subject: probabilistic segmentation of gray matter
To: freesurfer@nmr.mgh.harvard.edu

Hi,
I have a question about a probabilistic segmentation of gray matter with
freesurfer. How can I do it?
if I binarize like this:

mri_binarize --i aparc+aseg.mgz --min 999.5 --o ctx.mgz

I obtain only a mask 0-1. Can I obtain a probablistic map like I obtained
with SPM and FSL of the gray matter?
thank you in advance

Giacomo Mandruzzato
Student of Bioengineering
Universiti of Padova