Hello all,

We are having trouble with the output after running  recon-all -all -subjid subjectx on our scans.  

Registrations and skull striping look okay, but the white matter and pial surface segmentations leave outportions of the anterior temporal lobe. 

After adding control points to the left temporal lobe, we then ran recon-all -autorecon2 –cp -autorecon3 -subjid subjects.  

This made the the left lobe look better, but then we spotted new missing bits on the right side

anterior temporal lobe. 

Any ideas on dealing with these missing temporal lobe issues?

Thanks,

Eileen Daly