----Messaggio originale----
Da: ayendiki@nmr.mgh.harvard.edu
Data: 25-set-2013 17.49
A: <stdp82@virgilio.it>
Cc: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] Import FS data to FSL


1 - Yes.
2 - You can use mri_aparc2aseg to grow the cortical labels into the white
matter (say, by 2mm). The file that it will produce will be a volume file,
so then you just run mri_binarize to extract specific labels. Make sure
you save them in nifti format for FSL.

On Wed, 25 Sep 2013, stdp82@virgilio.it wrote:

> Hi list,
>
> I have 2 questions, please.
>
> 1-The bedpostX that I have run for TRACULA could be used for PROBTRACKX
> (FSL)?
>
> 2-I'd like to export cortical masks from FS to FSL.
>
> An option is mri_binarize but this way failed in probtrackx (fsl).
> FSL list have advised me that I should use label2surf command to convert
> label to surface files.
>
> Where could find the .label (according to FreeSurferColorLUT.txt) to build
> mask of frontal, parietal, motor, sensor, temporal and occipital lobes?
>
> Do you have other ways that you advise me?
>
>
> Thanks,
>
>
> Stefano
>
>
>
>
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