I'm wondering if it is some kind of display issue. I notice the color
scale is flipped upside down. Is there another computer you can test it
on? What platform are you using?

On 01/19/2016 09:20 AM, Thục Trinh wrote:
> Hi Bruce,
> I worked on my functional data, the command lines below,
>
>   * preproc-sess -s NCP140008_1  -fsd raw -stc down -surface fsaverage
>     lhrh  -fwhm 7 -per-run
>
>   * mkanalysis-sess  -fsd raw -stc down  -surface fsaverage lh -fwhm 7
>     -event-related  -nskip 1 -paradigm work.par -nconditions 3 -spmhrf
>     0 -TR 3 -refeventdur 1 -polyfit 2 -analysis my-work.sm07.lh
>      -per-run -force
>
>   * mkcontrast-sess -analysis my-work.sm07.lh -contrast con-v-base -a 1
>
>   * selxavg3-sess -s NCP140008_1  -analysis my-work.sm07.lh
>
> after finish this step, I run the command to visualize the output
>
>   * tksurfer-sess -s NCP140008_1 -analysis my-work.sm07.lh  -c con-v-base
>
> The output is attached
>
> Thank you,
> Trinh
>
>
> 2016-01-19 21:01 GMT+07:00 Bruce Fischl <fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>:
>
>     Hi Trinh
>
>     we can't help you unless you send us your command lines and screen
>     output.
>
>     cheers
>     Bruce
>
>     On Tue, 19 Jan 2016, Thục Trinh wrote:
>
>         Hello freesurfer experts,
>         I'm having a trouble with visualize the first level analysis
>         output of
>         FSFAST on brain surface (fsaverage).  When I open tksurfer
>         tool to look at
>         the contrast for the analysis on Right hemisphere space, the
>         result display
>         the contrast on left hemisphere and vice versa when I want to
>         display the
>         contrast on Left hemisphere space.  I already checked the
>         registration
>         quality after run pre-processing and the results were quite good.
>         I hope you can help me to figure out this problem.
>
>         Thank you and have a nice day,
>         Trinh
>
>
>
>
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