Hi Rujing
1. No, you can always combine the hemispheres into a volume later (e.g. by
adding them).
2. Try --identity <subject name>
cheers
Bruce
On Sat, 15
Mar 2014, charujing123 wrote:
> Hi doug and other FS experts,
> Thanks doug.
> I have 2 new questions:
> 1,What you told me is generate a hemisphere. So there is only one hemisphere
> I can see in the AFNI?
> 2,After typing this code:
> "mri_surf2vol --surfval rh.36sb.10.mgh --hemi rh --fillribbon --subject
> fsaverage --template/mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects/fsaverage/mri/orig
> --o test.nii."
> the command window echo this error message:
> "gdiagno = -1
> A volume registration file must be supplied"
> Thanks.
> All the best.
> Rujing Zha
>
> 2014-03-13
>
> ____________________________________________________________________________
> charujing123
>
> ____________________________________________________________________________
> 发件人：Douglas Greve <greve@nmr.mgh.harvard.edu>
> 发送时间：2014-03-12 23:00
> 主题：Re: [Freesurfer] convert sig.mgh into *.nii
> 收件人："freesurfer"<freesurfer@nmr.mgh.harvard.edu>
> 抄送：
>
>
> Use mri_surf2vol to do this. Soemthing like
>
> mri_surf2vol --surfval rh.36...mgh --hemi rh --fillribbon --subject
> fsaverage --template $SUBJECTS_DIR/fsaverage/mri/orig --o yourvolume.nii
>
> doug
>
>
> On 3/11/14 10:10 PM, charujing123 wrote:
> Hi Bruce,
> Thanks Bruce.
> I knew that code, but I have no idea to deal with my problem after
> reading the help. Would you please tell me how to use mri_surf2vol
> after I describe my problem details?
> I have a file named rh.36sb.score.thickness.10.mgh which is created
> from the "mris_preproc --fsgd $FSGDFILE --target fsaverage --hemi
> $style --meas thickness --out ${style}.${FSGDFILE%_*}.00.mgh". I want
> to convert this file into nii format volume-based, so I can read it by
> AFNI.
> Thanks.
> All the best.
> Rujing Zha
>
> 2014-03-12
>
> ____________________________________________________________________________
> charujing123
>
> ____________________________________________________________________________
> 发件人：Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> 发送时间：2014-03-12 09:44
> 主题：Re: [Freesurfer] convert sig.mgh into *.nii
> 收件人："charujing123"<charujing123@163.com>
> 抄送："freesurfer@nmr.mgh.harvard.edu"<freesurfer@nmr.mgh.harvard.edu>
>
> try mri_surf2vol with the output volume named .nii
>
> cheers
> Bruce
> On Wed, 12 Mar 2014,
> charujing123 wrote:
>
> > Hi doug,
> > Thanks doug.
> > I try this code, but it represent two dimension for each subject data whe
> n
> > loaded in the AFNI. Is there any code to volume-based conversion from mgh
> to
> > nii?
> > All the best.
> > Rujing Zha
> >
> > 2014-03-12
> >
> > _________________________________________________________________________
> ___
> > charujing123
> >
> > _________________________________________________________________________
> ___
> > 发件 人：Douglas N Greve <greve@nmr.mgh.harvard.edu>
> > 发送时间：2014-03-12 00:16
> > 主题：Re: [Freesurfer] convert sig.mgh into *.nii
> > 收件 人："freesurfer"<freesurfer@nmr.mgh.harvard.edu>
> > 抄送：
> >
> >
> > mri_convert file.mgh file.nii
> >
> > doug
> >
> > On 03/11/2014 05:55 AM, charujing123 wrote:
> > > Hi FS experts,
> > > I want to extract time course from sig.mgh. But the *.y.ocn.mgh cannot
?? ?
> > > be created. So I want to view it in other formats, such as nii. So how
?? ?
> > > to convert it into nii format.
> > > Thanks.
> > > All the best.
> > > Rujing Zha
> > > 2014-03-11
> > > -----------------------------------------------------------------------
> -
> ?? ?> charujing123
> > >
> > >
> > > _______________________________________________
> > > Freesurfer mailing list
> > > Freesurfer@nmr.mgh.harvard.edu
> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> > --
> > Douglas N. Greve, Ph.D.
> > MGH-NMR Center
> > greve@nmr.mgh.harvard.edu
> > Phone Number: 617-724-2358
> > Fax: 617-726-7422
> >
> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
?? ?
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> > The information in this e-mail is intended only for the person to whom it
> i
> > s
> > addressed. If you believe this e-mail was sent to you in error and the e-
> ma
> > il
> > contains patient information, please contact the Partners Compliance Help
> Li
> > ne at
> > http://www.partners.org/complianceline . If the e-mail was sent to you in
> e
> > rror
> > but does not contain patient information, please contact the sender and p
> ro
> > perly
> > dispose of the e-mail.
> >
> >
> >
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
>