External Email - Use Caution        

Hi,
I have indeed the same outputs.
Here is the output of the below commands:

[schopenhauer:LC_HYP] (nmr-dev-env) which mri_sclimbic_seg
/usr/local/freesurfer/7.4.1/bin/mri_sclimbic_seg

[schopenhauer:LC_HYP] (nmr-dev-env) which fspython
/usr/local/freesurfer/7.4.1/bin/fspython

[schopenhauer:LC_HYP] (nmr-dev-env) bash -x `which mri_sclimbic_seg` --s HAB_008_CST_2.4
+ '[' '!' -e /usr/local/freesurfer/7.4.1 ']'
+ exec /usr/local/freesurfer/7.4.1/bin/fspython /usr/local/freesurfer/7.4.1/python/scripts/mri_sclimbic_seg --s HAB_008_CST_2.4
/usr/local/freesurfer/7.4.1/python/scripts/mri_sclimbic_seg --s HAB_008_CST_2.4
Excluding seg [853]
Using CPU
Illegal instruction (core dumped)

Heidi

From: fsbuild <fsbuild@contbay.com>
Sent: Sunday, August 20, 2023 10:41 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Cc: Jacobs, Heidi I.,PHD <HJACOBS@mgh.harvard.edu>
Subject: Re: [Freesurfer] ScLimbic issue
 

        External Email - Use Caution        

 
Check if you see the following output for these commands, 

% which mri_sclimbic_seg
/usr/local/freesurfer/7.4.1/bin/mri_sclimbic_seg

% which fspython
/usr/local/freesurfer/7.4.1/bin/fspython

Try running that command as listed below followed by your own arguments to it, i.e. try,

%  bash -x `which mri_sclimbic_seg` --s HAB_008_CST_2.4

... and send along the output ...

- R.

On Aug 20, 2023, at 21:31, Jacobs, Heidi I.,PHD <HJACOBS@mgh.harvard.edu> wrote:

mri_sclimbic_seg