Dear all,<div>I have an a priori ROI mask previously created in AFNI for functional data. My hypothesis requires me to derive cortical thickness values for the same ROIs. How would I obtain the values using these ROIs from freesurfer? The mask was generated in Talairach space and are surface level ROIs. I tried using mris_anatomical_stats but it didn&#39;t seem to work (possibly because the masks weren&#39;t created using freesurfer/weren&#39;t saved in .label files). How would I proceed? I realize this is probably pretty simple but I&#39;m new to freesurfer and really appreciate any guidance.</div>
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<div><br></div>-- <br>Sonya Kaur<div><br></div><div>Clinical Psychology Graduate Student</div><div>Department of Psychology</div><div>The University of Texas, Austin</div><div>1 University Station, A8000</div><div>Austin, TX 78712</div>


<span style="border-collapse:collapse;color:rgb(136,136,136)"><span style="border-collapse:separate;color:rgb(0,0,0)">SEA 4.110E</span></span><div><a href="mailto:sonya_kaur@mail.utexas.edu" target="_blank"></a></div><div>


<a href="mailto:sonya_kaur@mail.utexas.edu" target="_blank">sonya_kaur@mail.utexas.edu</a><br></div><br>
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