Hi list,
<div><br></div><div>I'm trying to run mris_preproc.</div><div><br></div><div>I have my recon-all output in /Application/freesurfer/subjects/subject_prova/folder_for_each_subj</div><div><br></div><div>The file.fsgd is in&nbsp;/Application/freesurfer/subjects directory and it is called as prova.fsgd.</div><div><br></div><div>When I run:</div><div><br></div><div><div>mris_preproc --fsgd /Applications/freesurfer/subjects/prova.fsgd --target fsaverage --hemi lh \ --meas thickness --out /Applications/freesurfer/subjects/lh.thickness.00.mgh</div><div><br></div><div>I obtain:</div><div><br></div><div>nsubjects = 37</div><div>tmpdir is /Applications/freesurfer/subjects/tmp.mris_preproc.3476</div><div>/Applications/freesurfer/subjects</div><div>mkdir: /Applications/freesurfer/subjects/tmp.mris_preproc.3476: Permission denied</div><div>ERROR: creating /Applications/freesurfer/subjects/tmp.mris_preproc.3476</div></div><div><br></div><div>To check it, I also attacked the .fsgd file.</div><div><br></div><div><br></div><div>Thank you very much,</div><div><br></div><div><br></div><div>Stefano</div><div><br></div><div><br></div>