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Never mind, I just got it working by replacing "white.H" with "meancurv".

Thanks.

On Wed, Jan 16, 2019 at 5:32 PM Martin Juneja <mj70481@gmail.com> wrote:
Hi Freesurfer experts,

I am interested in estimating mean curvature index for each of the 7 networks (Yeo7 atlas) for my data of healthy controls. I am able to estimate this subjectwise, and the output stats file for each subject looks like following:

# ColHeaders StructName NumVert SurfArea GrayVol ThickAvg ThickStd MeanCurv GausCurv FoldInd CurvInd
FreeSurfer_Defined_Medial_Wall           8952   5993   1906  0.916 1.370     0.082     0.026       85     7.4
7Networks_1                             23231  15309  34881  2.139 0.685     0.125     0.028      261    25.2
7Networks_2                             20682  12735  35481  2.511 0.746     0.101     0.022      167    17.7
7Networks_3                             14062   9362  24591  2.423 0.569     0.107     0.021      124    11.4
7Networks_4                             12798   8490  25886  2.776 0.656     0.109     0.023      115    11.4
7Networks_5                             10915   7302  26939  3.047 0.899     0.122     0.030      133    12.6
7Networks_6                             15373  10259  28312  2.539 0.698     0.123     0.027      164    15.9
7Networks_7                             32448  21779  70662  2.773 0.695     0.124     0.028      375    36.0

I have 123 such files from a set of 123 subjects. I was just wondering how can I save mean curvature indices from all the subjects in one file (text or excel)? I defined my Subjects.txt file with subject IDs of each subject. I am not sure how to proceed from there to save curvature indices.

I tried to run following command, but that does not work:

aparcstats2table --subjectsfile Subjects.txt --hemi lh  --meas white.H -t MCI.txt


I would really appreciate any help.