Hi Ahsan,

Can you try mri_segstats? MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/mri_segstats

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Ahsan Ali
Sent: Friday, June 9, 2023 10:08 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Generate Stats File for fornix.mgz in T1 weighted MRI ?

External Email - Use Caution

Hi,

Please help me with this.

With Regards
Ahsan
---------------------------------------------
Ahsan Ali
Ph.D Scholar
Department of Applied Mechanics and Biomedical Engineering (AMBE)
Indian Institute of Technology Madras
Chennai-600036, Tamil Nadu, INDIA
Mob.:- +91-8899605552

On Fri, May 26, 2023 at 11:13 AM Ahsan Ali <ahsan889960@gmail.com> wrote:

Dear Sir/Madam,

I'm having a ADNI T1 weighted MRI database. I have run the recon-all command successfully and got a couple of default stats files in the stats folder. Then fornix.mgz is estimated using command "mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto_CCseg.mgz -f folder_name" successfully. Now what can be done to generate the stats for fornix.mgz?

I've been struggling with this for a long time, please help me with this.

I'm using ubuntu.

With Regards
Ahsan
---------------------------------------------
Ahsan Ali
Ph.D Scholar
Department of Applied Mechanics and Biomedical Engineering (AMBE)
Indian Institute of Technology Madras
Chennai-600036, Tamil Nadu, INDIA
Mob.:- +91-8899605552