External Email - Use Caution

Hey Devs,

I'm experimenting with recon-all_clinical in FS 7.4.0. I'm wondering how to pass the --qcache option to recon-all.

I also wanted to give you a heads up that recon-all_clinical is calling for a colortable in the dev build which is resulting in an error. I don't think this will affect my analysis but it may someone else's. Here is the error message:

" ERROR: cannot find or read /usr/local/freesurfer/dev/average/colortable_BA.txt
computing statistics for each annotation in ./lh.BA_exvivo.annot. "

Its the same for RH.BA_exvivo.annot, and continues:

error: No such file or directory

error: could not read annot file ./rh.BA_exvivo.annot

error: No such file or directory

error: mris_anatomical_stats: could not read annotation file ./rh.BA_exvivo.annot

Please let me know if this will affect thickness or volume analysis.

Thanks, Nic