Hello FreeSurfer Developers,

I would like to run samseg with the lesion module, hence samseg is asking to install Tensorflow using the following command:

fspython -m pip install tensorflow==1.13.1

However, when execute the command, I get the following error:

protobuf requires Python '>=3.7' but the running Python is 3.6.8

The problem persists when create a conda environment and try to install tensorflow there.

I cannot seem to work around this problem, as fspython version seems to be 3.6.8. Why does FreeSurfer come with a Python version that conflicts with a protobuf version required to install tensorflow 1.13.1?

Looking forward to your ideas/suggestions!

Best regards,

Joost de Jong

Maastricht UMC+, The Netherlands

FreeSurfer version: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b

Platform: CentOS Stream release 8

uname -a Linux radstation27.prd.corp 4.18.0-408.el8.x86_64 #1 SMP Mon Jul 18 17:42:52 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux

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Dr. Ir. Joost de Jong

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Department of Radiology and Nuclear Medicine

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