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Hello,

I have been using bbregister in this format

bbregister —mov dkti4d.nii —s NewT2out —init-fsl —bold —lea register.lta

NewT2out is the output of the free surfer processing on the T1 image and dkti4d.nii is the template file I want to use for the registration.

it has worked before but now there is a new error

ERROR: cannot find NewT2out in /project/iconic/apps/freesurfer/5.3.0/install/subjects

even though I have already ran the command:

setenv SUBJECTS_DIRECTORY /project/bil/Nada


This path is where both NewT2out and dkti4d.nii are located.

I don’t understand what is going wrong

Best
Nada

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