Here's the last two:

==> /cind/00/FSv4Test/Freesurfer/subjects/average/make_cortex_label.tmp.20230/lh.S_temporal_superior.label <==
161249 -45.309 4.980 -29.869 0.000000
161250 -45.807 4.629 -30.666 0.000000
161325 -45.049 6.874 -30.794 0.000000
161326 -45.879 6.790 -32.199 0.000000
161327 -45.549 6.484 -31.590 0.000000
161328 -45.319 6.197 -30.981 0.000000
161329 -45.690 5.521 -31.142 0.000000
161330 -46.232 4.918 -31.183 0.000000
161331 -46.785 4.335 -31.100 0.000000
161332 -47.931 4.166 -31.260 0.000000
==> /cind/00/FSv4Test/Freesurfer/subjects/average/make_cortex_label.tmp.20230/lh.S_temporal_transverse.label <==
155216 -52.514 -12.091 0.859 0.000000
155217 -52.872 -12.260 0.502 0.000000
155218 -53.283 -12.517 0.244 0.000000
155219 -54.154 -12.140 -0.187 0.000000
155220 -55.043 -11.786 -0.485 0.000000
155221 -55.928 -11.443 -0.708 0.000000
155222 -55.854 -10.375 -1.074 0.000000
155223 -56.310 -10.689 -1.021 0.000000
155224 -56.763 -11.057 -0.827 0.000000
155225 -57.548 -10.651 -0.865 0.000000

At 10:32 AM 4/17/2008, Bruce Fischl wrote:

that looks okay. What about the last two lines?
On Thu, 17 Apr 2008, Sky Raptentsetsang wrote:

Hi Bruce,
Here are the first few lines of the lh.cortex.label:
#label , from subject ??
149955
==>/cind/00/FSv4Test/Freesurfer/subjects/average/make_cortex_label.tmp.20230/lh.G_a
nd_S_occipital_inferior.label <==
161841 -37.845 -74.578 -13.988 0.000000
161842 -37.786 -74.111 -14.300 0.000000
161843 -37.811 -73.715 -14.628 0.000000
161844 -37.907 -73.352 -14.952 0.000000
161865 -37.824 -71.907 -13.407 0.000000
161867 -37.788 -71.373 -13.692 0.000000
161868 -38.012 -72.139 -13.895 0.000000
161869 -38.155 -72.375 -14.413 0.000000
161870 -38.143 -72.648 -14.845 0.000000
161871 -38.084 -72.975 -15.268 0.000000
==>/cind/00/FSv4Test/Freesurfer/subjects/average/make_cortex_label.tmp.20230/lh.G_a
nd_S_transverse_frontopolar.label <==
146036 -10.156 67.319 -1.698 0.000000
146037 -9.764 67.608 -2.021 0.000000
146038 -9.389 67.908 -2.304 0.000000
146039 -8.876 67.922 -0.865 0.000000
146040 -8.929 68.036 -1.708 0.000000
146041 -9.014 68.059 -2.603 0.000000
146042 -8.649 68.148 -2.940 0.000000
146043 -8.286 68.109 -3.301 0.000000
146044 -7.962 67.947 -3.652 0.000000
146045 -7.753 67.564 -3.208 0.000000

At 06:05 PM 4/16/2008, Bruce Fischl wrote:
      Hi Sky,
      what are the first few lines of:
       /cind/00/FSv4Test/Freesurfer/subjects/average/label/lh.cortex.label
      is your partition full?
      Bruce
      On Wed, 16 Apr 2008, Sky Raptentsetsang wrote:
            Hello Freesurfers,
            I am having troubles analyzing some data in the
            qdec tool. I have two
            groups of the same subjects that were run with
            different versions of FS
            and I have put them in the same SUBJECTS_DIR and
            smoothed and created an
            average subject. I have made a qdec.table.dat
            file and the appropriate
            .levels files. The qdec.table.dat file seems to
            load okay but once I try
            to run an analysis i get the attached error
            messages.
            Any ideas on where this error is coming from? It
            is stating that the
            error is coming from a line in text that I don't
            think exists.
            (I have also included the qdec.table.dat)
            erorr.log:
            mri_glmfit: could not parse 149955th line in
            /cind/00/FSv4Test/Freesurfer/subjects/average/label/lh.cortex.label
            Command print out:
            [sky@polaris subjects]$ qdec &
            [1] 20069
            [sky@polaris subjects]$ Using Freesurfer version
            4.
              Subjects Directory is
            /cind/00/FSv4Test/Freesurfer/subjects
              Sessions Directory is /home/sky/sessions
            Reading /opt/freesurfer4.0.2/lib/tcl/tkUtils.tcl
            Using /opt/freesurfer4.0.2/lib/tcl/fsgdfPlot.tcl
            Loading data table
            /cind/00/FSv4Test/Freesurfer/subjects/qdec.table.dat...
            Number of columns: 5
            fsid column:        1
            Number of factors: 4
            Number of subjects: 68
            .
            .
            .
            .
            .
            $Id: mri_glmfit.c,v 1.138.2.1 2007/09/12 15:38:19
            nicks Exp $
            cwd /cind/00/FSv4Test/Freesurfer/subjects
            cmdline mri_glmfit --y
            /cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version/y.mgh
            --fsgd
            /cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version/qdec.fsgd
            --glmdir
            /cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version
            --surf average lh --label
            /cind/00/FSv4Test/Freesurfer/subjects/average/label/lh.cortex.label--C/cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version/contrasts/Avg
            -In
            tercept-thickness.mat--C/cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version/contrasts/Dif
            f-v
            3-v4-Intercept-thickness.mat
            sysname Linux
            hostname polaris.v21.med.va.gov
            machine x86_64
            user     sky
            FixVertexAreaFlag = 1
            UseMaskWithSmoothing     1
            OneSampleGroupMean 0
            y
            /cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version/y.mgh
            logyflag 0
            usedti 0
            FSGD
            /cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version/qdec.fsgd
            labelmask
            /cind/00/FSv4Test/Freesurfer/subjects/average/label/lh.cortex.label
            maskinv 0
            glmdir
            /cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version
            DoFFx 0
            Creating output directory
            /cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version
            Loading y from
            /cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version/y.mgh
            Matrix condition is 1
            mri_glmfit: could not parse 149955th line in
            /cind/00/FSv4Test/Freesurfer/subjects/average/label/lh.cortex.label
            ERROR reading
            /cind/00/FSv4Test/Freesurfer/subjects/average/label/lh.cortex.label
            Error in Analyze: command failed: mri_glmfit --y
            /cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version/y.mgh
            --fsgd
            /cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version/qdec.fsgd
            --glmdir
            /cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version
            --surf average lh --label
            /cind/00/FSv4Test/Freesurfer/subjects/average/label/lh.cortex.label--C/cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version/contrasts/Avg
            -In
            tercept-thickness.mat--C/cind/00/FSv4Test/Freesurfer/subjects/qdec/lh.thickness.version/contrasts/Dif
            f-v
            3-v4-Intercept-thickness.mat
            Thanks in advance.
            Sky Raptentsetsang
            Staff Research Associate
            CIND, San Francisco VAMC
            Department of Radiology, UCSF
            4150 Clement St. Bldg. 13, 2nd Floor, Mail Stop
            114M
            San Francisco, CA 94121
            Phone 415.221.4810 ext. 4186
            Fax 415.386.3954
      Sky Raptentsetsang
      Staff Research Associate
      CIND, San Francisco VAMC
      Department of Radiology, UCSF
      4150 Clement St. Bldg. 13, 2nd Floor, Mail Stop 114M
      San Francisco, CA 94121
      Phone 415.221.4810 ext. 4186
      Fax 415.386.3954

Sky Raptentsetsang

Staff Research Associate
CIND, San Francisco VAMC
Department of Radiology, UCSF
4150 Clement St. Bldg. 13, 2nd Floor, Mail Stop 114M
San Francisco, CA 94121
Phone 415.221.4810 ext. 4186
Fax 415.386.3954