You can manually edit them to restore the parts that have been stripped (using the clone feature in freeview). See https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/SkullStripFix_freeview


On 1/27/2023 5:21 AM, Rakshathi Basavaraju wrote:

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Dear FS,

A few of my brainmasks were excessively stripped and I used watershedding to correct them. Many I could set right. But a few scans despite playing around with different h values if I cannot restore the cut parts of the brainmask what is to be done in that case? Should I discard the same?

Thanks,
Dr. Rakshathi Basavaraju (M.D. Psychiatry)
Assistant Professor (Department of Health Research-sponsored return-home research fellowship)
Principal Investigator - OPCINSS 
Department of Psychiatry
National Institute of Mental Health and Neurosciences (NIMHANS)
Bengaluru, Karnataka, India-560029
Phone: +91-9480829898/+91-80-26972156/+91-80-26995320

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