Hello Miguel,

There may be an issue with the version of python you are sourcing. The utility requires python 3.6+.

To check your version you can run: 'python --version'

If your version of python is not 3.6+ you will need to source an updated version of python.

Best,
Jackson
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Miguel Ángel Rivas Fernández <miguelrivasfdez@gmail.com>
Sent: Monday, September 20, 2021 4:44 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Freesurfer V6: aparcstats2table command python issues
 

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Dear Freesurfer experts,

I am trying to use the aparcstats2table command (FSurfer V.6) in order to export the thickness measures but there should be an issue with my python version. This is the complete output:



aparcstats2table --hemi lh --subjects 4166 --meas thickness --parc aparc.a2009s --tablefile thickness.txt

Usage: python [options]
python: error: no such option: --hemi



Could you give me some suggestions to solve this problem?

Thank you very much in advance.

Best regards,
--
Miguel Ángel Rivas Fernández