Hi Elisabetta
we would need the entire subject directory. Did you look at the surfaces
I suggested?
cheers
Bruce
On Fri, 20 Nov 2015, Elisabetta del Re wrote:
> Hi Bruce,
> thank you so much.
> I attach here T1 of 2 of the cases.
> Thank you again,
> regards,
> Elisabetta
>
> On 11/4/15, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
>> Hi Elisabetta
>>
>> I don't think that's an error, just a warning. That said, a defect with
>> 38K vertices is awfully big, almost 1/4 of the surface, which usually means
>>
>> something big is wrong (e.g. cerebellum or skull attached to the hemi). Can
>>
>> you look at the orig.nofix or the inflated.nofix and see what is wrong? If
>> you upload one of the subjects I'll take a look
>>
>> cheers
>> Bruce
>>
>>
>> On Wed, 4 Nov 2015, Elisabetta del Re wrote:
>>
>>> Dear FreeSurfer team,we are running FreeSurfer on 1.5T cases.
>>> For a few of them we get error messages that I am attaching.
>>> Mostly the message error relates to excessive topological defect.
>>> Any suggestions you can give to us?
>>> Thank you,
>>> regards,
>>> Elisabetta
>>>
>>> --
>>> Elisabetta C. del Re, Ph.D.
>>> Instructor,
>>> Department of Psychiatry
>>> Harvard Medical School
>>> phone 617 9675569
>>> mail elisabetta_delre@hms.harvard.edu
>>>
>>>
>>
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>