I want to use Freesurfer-Samseg for MS lesion segmentation(cross-sectional).

I have ground truth values(binary mask), lesions number and lesion volume. I will compare these with the output of freesurfer-samseg.

I am confused about the usage of mri_binarize and mri_segstats.

Could you explain in detail the steps I need to follow for my purpose?

Best,

Wish