Hi Barbara,

I think you are asking to run FastSurfer and source FS7.1 binaries instead of the recommended 6.0. for the surface processing part.

This may work, but it is not recommended. We only tested FastSurfer in combination with 6.0. as described in the paper. So if you use 7.1 you are on your own.

Eventually we plan to upgrade FastSurfer to also run with 7.1, which also requires to modify the surface processing script to better represent the steps that 7.1 is performing in recon-all.

Initial tests of this however did not show improvements. So better stick with 6.0 for now.

Also please note that FastSurfer questions should currently be asked on the FastSurfer GitHub Issue page https://github.com/deep-mi/fastsurfer

Best, Martin

On 20. Aug 2020, at 15:59, Barbara Kreilkamp <bakk.hbg@googlemail.com> wrote:

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Dear all,

I noticed FastSurfer also seems to run with a 7.1.0 FS version.

Or is there any reason not to do this?

Thank you,

Kind wishes,
Barbara

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