Hi Rujing
can you cc the list so that others can help?
thanks
Bruce
On Thu, 13 Feb 2014,
charujing123 wrote:
>
> Warning: This message has had one or more attachments removed
> (recon-all.cmd). Please read the "NMR-MGH-Attachment-Warning.txt"
> attachment(s) for more information.
>
> Hi Bruce,
> Some output of recon-all can be got in the attachment.
> Thanks Bruce.
> Rujing Zha
>
> 2014-02-13
>
> ____________________________________________________________________________
> charujing123
>
> ____________________________________________________________________________
> 发件人："charujing123"<charujing123@163.com>
> 发送时间：2014-02-13 21:48
> 主题：Re: [Freesurfer] recon-all CTABreadASCII error
> 收件人："Bruce Fischl"<fischl@nmr.mgh.harvard.edu>
> 抄送："freesurfer@nmr.mgh.harvard.edu"<freesurfer@nmr.mgh.harvard.edu>
>
> Hi Bruce,
> I ran this code succefully last year. But I cannot completely this command
> in recent days as errors just above. There is nothing change in the server
> during this time. According this ERROR information, I asked administrator to
> delete some files in the /tmp folder and change the write access. But it was
> still report similar error. And I ran this command as root, then it
> terminated as a similar situation.
> Thanks Bruce.
> All the best.
> Rujing Zha
>
> 2014-02-13
>
> ____________________________________________________________________________
> charujing123
>
> ____________________________________________________________________________
> 发件人：Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> 发送时间：2014-02-13 21:33
> 主题：Re: [Freesurfer] recon-all CTABreadASCII error
> 收件人："charujing123"<charujing123@163.com>
> 抄送："freesurfer@nmr.mgh.harvard.edu"<freesurfer@nmr.mgh.harvard.edu>
>
> Hi Rujing
>
> do you have write access to /tmp? Or is it full maybe?
>
> Bruce
> On Thu, 13 Feb 2014,
> charujing123 wrote:
>
> > Dear FS experts,
> > It represents this message in the command window after ran "recon-all
> > -autorecon-pial -s CON_EIU01 -no-isrunning":
> > Reading annotation reading colortable from annotation file...
> > colortable with 36 entries read originally/autofs/space/terrier_001/users
> /nicks/freesurfer/average/colortable_desikan
> > _killiany.txt)
> > CTABwriteFileASCII(/tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab): could not
>
> > open for writing
> >
> > Seg base 1000 Permission denied
> > CTABreadASCII(/tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab): could not open
>
> > file
> > No such file or directory
> > ERROR: reading /tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab
> > Linux centos2 2.6.18-308.20.1.el5xen #1 SMP Tue Nov 13 11:03:56 EST 2012
?? ?> x86_64 x86_64 x86_64 GNU/Linux
> >
> > recon-all -s CON_EIU04 exited with ERRORS at Thu Feb 13 14:01:12 CST 2014
>
> >
> > Thanks.
> > All the best.
> > Rujing Zha
> >
> > 2014-02-13
> >
> > _________________________________________________________________________
> ___
> > charujing123
> >
> >
>
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