Fri Dec  8 12:49:05 EST 2017
setenv SUBJECTS_DIR /gpfs/home/d/u/durant/Karst/IMAGENE_geode/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_MASKED_2_FREESURFER60_NOSKULLSTRIP_KARST_10232017_RES
cd /gpfs/projects/RadImagSci/CFN/test-SDA-import/VTRAK4/xserveraids/vtrak4/mci/IMAGENE/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_MASKED_2_FREESURFER60_NOSKULLSTRIP_KARST_10232017_RES/fsaverage_denoised-dec-7-2017-ALL_DX_neuro14/stats/surfstat_stepII
/N/soft/rhel6/freesurfer/6.0.0/freesurfer/bin/mris_preproc --fsgd IMAGENE_BL_FINAL.txt --hemi lh --meas thickness --target fsaverage_denoised-dec-7-2017-ALL_DX_neuro14 --out lh.thickness.mgh

Linux hm007.karst.uits.iu.edu 2.6.32-696.16.1.el6.x86_64 #1 SMP Sun Oct 8 09:45:56 EDT 2017 x86_64 x86_64 x86_64 GNU/Linux
$Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
tmpdir is ./tmp.mris_preproc.4940
Src lh fsaverage_denoised-dec-7-2017-ALL_DX_neuro14.sphere.reg
Trg lh sphere.reg




---------------------------------------------------
#@# 1/159 E001_V1 Fri Dec  8 12:49:05 EST 2017 --------------
-----------------------
mri_surf2surf --srcsubject E001_V1 --srchemi lh --srcsurfreg fsaverage_denoised-dec-7-2017-ALL_DX_neuro14.sphere.reg --trgsubject fsaverage_denoised-dec-7-2017-ALL_DX_neuro14 --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.4940/E001_V1.1.mgh --sval /gpfs/home/d/u/durant/Karst/IMAGENE_geode/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_MASKED_2_FREESURFER60_NOSKULLSTRIP_KARST_10232017_RES/E001_V1/surf/lh.thickness --sfmt curv --noreshape --cortex
MRISread(/gpfs/home/d/u/durant/Karst/IMAGENE_geode/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_MASKED_2_FREESURFER60_NOSKULLSTRIP_KARST_10232017_RES/E001_V1/surf/lh.fsaverage_denoised-dec-7-2017-ALL_DX_neuro14.sphere.reg): could not open file
Source registration surface changed to fsaverage_denoised-dec-7-2017-ALL_DX_neuro14.sphere.reg
Target registration surface changed to sphere.reg

$Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $

setenv SUBJECTS_DIR /gpfs/home/d/u/durant/Karst/IMAGENE_geode/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_MASKED_2_FREESURFER60_NOSKULLSTRIP_KARST_10232017_RES
cd /gpfs/projects/RadImagSci/CFN/test-SDA-import/VTRAK4/xserveraids/vtrak4/mci/IMAGENE/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_MASKED_2_FREESURFER60_NOSKULLSTRIP_KARST_10232017_RES/fsaverage_denoised-dec-7-2017-ALL_DX_neuro14/stats/surfstat_stepII
mri_surf2surf --srcsubject E001_V1 --srchemi lh --srcsurfreg fsaverage_denoised-dec-7-2017-ALL_DX_neuro14.sphere.reg --trgsubject fsaverage_denoised-dec-7-2017-ALL_DX_neuro14 --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.4940/E001_V1.1.mgh --sval /gpfs/home/d/u/durant/Karst/IMAGENE_geode/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_MASKED_2_FREESURFER60_NOSKULLSTRIP_KARST_10232017_RES/E001_V1/surf/lh.thickness --sfmt curv --noreshape --cortex 

sysname  Linux
hostname hm007.karst.uits.iu.edu
machine  x86_64
user     durant
srcsubject = E001_V1
srcval     = /gpfs/home/d/u/durant/Karst/IMAGENE_geode/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_MASKED_2_FREESURFER60_NOSKULLSTRIP_KARST_10232017_RES/E001_V1/surf/lh.thickness
srctype    = curv
trgsubject = fsaverage_denoised-dec-7-2017-ALL_DX_neuro14
trgval     = ./tmp.mris_preproc.4940/E001_V1.1.mgh
trgtype    = 
srcsurfreg = fsaverage_denoised-dec-7-2017-ALL_DX_neuro14.sphere.reg
trgsurfreg = sphere.reg
srchemi    = lh
trghemi    = lh
frame      = 0
fwhm-in    = 0
fwhm-out   = 0
label-src  = lh.cortex.label
label-trg  = lh.cortex.label
OKToRevFaceOrder  = 1
UseDualHemi = 0
Reading source surface reg /gpfs/home/d/u/durant/Karst/IMAGENE_geode/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_MASKED_2_FREESURFER60_NOSKULLSTRIP_KARST_10232017_RES/E001_V1/surf/lh.fsaverage_denoised-dec-7-2017-ALL_DX_neuro14.sphere.reg
No such file or directory
mri_surf2surf: could not read surface /gpfs/home/d/u/durant/Karst/IMAGENE_geode/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_MASKED_2_FREESURFER60_NOSKULLSTRIP_KARST_10232017_RES/E001_V1/surf/lh.fsaverage_denoised-dec-7-2017-ALL_DX_neuro14.sphere.reg
No such file or directory