Fri Nov 7 02:31:30 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/recon-all -subjid sub-08YFFYY2_ses-00A -i sub-08YFFYY2_ses-00A_rec-NORM_run-01_T1w.nii.gz -all subjid sub-08YFFYY2_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Actual FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 build-stamp.txt: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 8192 kbytes maxproc 1545830 maxlocks unlimited maxsignal 1545830 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 377Gi 38Gi 200Gi 22Gi 164Gi 338Gi Swap: 0B 0B 0B SLURM_JOB_ID 71659 ######################################## program versions used 8.0.0 (freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a) 8.0.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:30-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mris_convert -all-info ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_motion_correct.fsl 8.0.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/11/07-08:31:31-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-06 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ####################################### GCADIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A_rec-NORM_run-01_T1w.nii.gz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig/001.mgz mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A_rec-NORM_run-01_T1w.nii.gz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig/001.mgz INFO: using NIfTI-1 sform (sform_code=1) reading from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A_rec-NORM_run-01_T1w.nii.gz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Fri Nov 7 02:31:33 CST 2025 Found 1 runs /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig/001.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz mri_info /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz rawavg.mgz ======================================== Volume information for /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz type: MGH intent: MRI (0) dimensions: 176 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: SHORT (4) fov: 256.000 dof: 1 xstart: -88.0, xend: 88.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 2500.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = 1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 0.5000 : x_a = 0.0000, y_a = 1.0000, z_a = 0.0000, c_a = 43.3971 : x_s = 0.0000, y_s = 0.0000, z_s = 1.0000, c_s = -21.1308 talairach xfm : Orientation : RAS Primary Slice Direction: axial voxel to ras transform: 1.0000 0.0000 0.0000 -87.5000 0.0000 1.0000 0.0000 -84.6029 0.0000 0.0000 1.0000 -149.1308 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant 1 ras to voxel transform: 1.0000 0.0000 0.0000 87.5000 0.0000 1.0000 0.0000 84.6029 0.0000 0.0000 1.0000 149.1308 0.0000 0.0000 0.0000 1.0000 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz --conform mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz --conform reading from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) volume geometry: valid : 783660096 extent : (256, 256, 256) voxel : ( 1.0000, 1.0000, 1.0000) x_(ras) : (-1.0000, 0.0000, 0.0000) y_(ras) : ( 0.0000, 0.0000, -1.0000) z_(ras) : ( 0.0000, 1.0000, 0.0000) c_(ras) : ( 0.5000, 43.3971, -21.1308) shears : ( 0.0000, 0.0000, 0.0000) file : /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram 0 4095 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz... mri_add_xform_to_header -c /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/talairach.xfm /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz INFO: extension is mgz mri_info /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz orig.mgz ======================================== Volume information for /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz type: MGH intent: MRI (0) dimensions: 256 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: UCHAR (0) fov: 256.000 dof: 1 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 2500.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 0.5000 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = 43.3971 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -21.1308 talairach xfm : /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal voxel to ras transform: -1.0000 0.0000 0.0000 128.5000 0.0000 0.0000 1.0000 -84.6029 0.0000 -1.0000 0.0000 106.8692 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant -1 ras to voxel transform: -1.0000 -0.0000 -0.0000 128.5000 -0.0000 -0.0000 -1.0000 106.8692 -0.0000 1.0000 -0.0000 84.6029 -0.0000 -0.0000 -0.0000 1.0000 lta_convert --inlta identity.nofile --src /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz --trg /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz --outlta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg2orig.lta 8.0.0 --inlta: identity.nofile input LTA transform. --src: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz src image (geometry). --trg: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz trg image (geometry). --outlta: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg2orig.lta output LTA. LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg2orig.lta... lta_convert successful. mri_synthstrip --threads 1 -i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/synthstrip.mgz Configuring model on the CPU Running SynthStrip model version 1 Input image read from: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz Processing frame (of 1): 1 done Masked image saved to: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/synthstrip.mgz If you use SynthStrip in your analysis, please cite: ---------------------------------------------------- SynthStrip: Skull-Stripping for Any Brain Image A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann NeuroImage 206 (2022), 119474 https://doi.org/10.1016/j.neuroimage.2022.119474 Website: https://synthstrip.io mri_synthseg --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/synthseg.rca.mgz --threads 1 --vol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/synthseg.vol.csv --keepgeom --addctab --cpu SynthSeg 2.0 using CPU, hiding all CUDA_VISIBLE_DEVICES using 1 thread addctab True predicting 1/1 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 138s 138s/step Reslicing to have same geom as the input [1. 1. 1.] segmentation saved in: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/synthseg.rca.mgz volumes saved in: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/synthseg.vol.csv #@# mri_synthseg vmpeak 28022468 If you use this tool in a publication, please cite: SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining B. Billot, D.N. Greve, O. Puonti, A. Thielscher, K. Van Leemput, B. Fischl, A.V. Dalca, J.E. Iglesias Medical Image Analysis, 2023. Fri Nov 7 02:35:14 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/synthstrip.mgz --t /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --affine-only --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305 --threads 1 -rwxr-x--- 1 root kdamme 30890 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1158263 Fri Nov 7 02:35:14 CST 2025 mri_synthmorph -m affine -t /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/aff.lta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/synthstrip.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz -j 1 #@# mri_synthmorph: affine, threads: 1, VmPeak: 10685784 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A lta_convert --invert --inlta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/aff.lta --outlta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta 8.0.0 --invert: will invert transform. --inlta: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/aff.lta input LTA transform. --outlta: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta output LTA. LTA read, type : 1 1.07987 -0.03636 -0.04297 -0.03922; 0.06002 1.06760 0.24149 -48.81013; 0.01792 -0.18516 1.13831 -0.42700; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta... lta_convert successful. To check affine registration tkregisterfv --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/synthstrip.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --reg /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/aff.lta AffineOnly specified, so exiting now Started at Fri Nov 7 02:35:14 CST 2025 Ended at Fri Nov 7 02:35:52 CST 2025 Fs-Synthmorph-Reg-Run-Time-Sec 38 Fs-Synthmorph-Reg-Run-Time-Min 0.63 Fs-Synthmorph-Reg-Run-Time-Hours 0.01 fs-synthmorph-reg Done 8.0.0 --ltavox2vox: output LTA as VOX_TO_VOX transform. --inlta: synthmorph.mni305/aff.lta input LTA transform. --outlta: talairach.xfm.lta output LTA. LTA read, type : 1 1.07987 -0.03636 -0.04297 -0.03922; 0.06002 1.06760 0.24149 -48.81013; 0.01792 -0.18516 1.13831 -0.42700; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file talairach.xfm.lta... lta_convert successful. 8.0.0 --inlta: talairach.xfm.lta input LTA transform. --outmni: talairach.xfm output MNI/XFM matrix. LTA read, type : 1 1.07987 -0.03636 -0.04297 -0.03923; 0.06002 1.06760 0.24149 -48.81013; 0.01792 -0.18516 1.13831 -0.42700; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. fs-synthmorph-reg --s sub-08YFFYY2_ses-00A --threads 1 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz --test Fri Nov 7 02:35:52 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg --s sub-08YFFYY2_ses-00A --threads 1 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz --test -rwxr-x--- 1 root kdamme 30890 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1160016 mri_mask -bb 3 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz cropping npad = 3 DoAbs = 0 Computing bounding box, npad = 3, 3, 3, 3, 3, 3 38 0 0 181 256 256 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz...done. lta_convert --inlta identity.nofile --src /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz --trg /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz --outlta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta 8.0.0 --inlta: identity.nofile input LTA transform. --src: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz src image (geometry). --trg: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz trg image (geometry). --outlta: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta output LTA. LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta... lta_convert successful. Fri Nov 7 02:35:53 CST 2025 mri_synthmorph -m affine -t /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.cropped.nii.gz -j 1 #@# mri_synthmorph: affine, threads: 1, VmPeak: 10654756 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io Fri Nov 7 02:36:29 CST 2025 mri_concatenate_lta -invert1 -invertout /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta invert the first LTA before applying it invert the output LTA Read individual LTAs Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2... Inverting output LTA Writing combined LTA to file /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta... mri_concatenate_lta successful. mri_concatenate_lta -invert2 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/reg.1.0mm.to.1.0mm.cropped.lta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert the second LTA before applying it Read individual LTAs Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2... Writing combined LTA to file /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta... mri_concatenate_lta successful. lta_convert --invert --inlta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --outlta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta 8.0.0 --invert: will invert transform. --inlta: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta input LTA transform. --outlta: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta output LTA. LTA read, type : 1 0.88415 0.04346 0.01912 2.31417; -0.06196 0.87368 -0.14525 43.01051; -0.01598 0.15077 0.80112 8.09576; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta... lta_convert successful. lta_convert --inlta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta --outmni /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.xfm 8.0.0 --inlta: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta input LTA transform. --outmni: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.xfm output MNI/XFM matrix. LTA read, type : 1 1.12689 -0.04985 -0.03593 -0.17264; 0.08112 1.10627 0.19864 -49.37716; 0.00721 -0.20919 1.21016 -0.81630; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. To check affine registration tkregisterfv --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz --reg /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta mri_synthmorph -m deform -t /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz -i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.cropped.nii.gz -j 1 -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz #@# mri_synthmorph: deform, threads: 1, VmPeak: 19869612 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io mri_warp_convert --inras /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz --insrcgeom /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz --outm3z /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz --vg-thresh 1e-5 --lta1-inv /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta --lta2 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/reg.1.0mm.cropped.to.1.0mm.lta 8.0.0 --inras: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz input RAS warp. --insrcgeom: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz atlas/source image (used for geometry). --outm3z: /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz output M3Z. Setting vg_isEqual_Threshold to 0.000010 Applying LTAs to the GCAM GCAMwrite(/scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz) [INFO] Warpfield::convert(): converting GCAM ... [INFO] Warpfield::convert(): gcam [193 x 229 x 193] [INFO] Warpfield::convert(): gcam image [256 x 256 x 256] [INFO] Warpfield::convert(): gcam atlas [193 x 229 x 193] [INFO] Warpfield::convert(): total out of range voxel count: 0 [INFO] niiWrite(): MGZ_INTENT_WARPMAP => NIFTI_INTENT_DISPVECT, intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [INFO] niiWrite(): convert displacement from 0 to 3 mri_warp_convert successful. mri_ca_register -invert-and-save /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz INFO: using NIfTI-1 sform (sform_code=1) Loading gcam [INFO] niiRead(): intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [DEBUG] Warpfield::read() gcam->status = GCAM_LABELED setting orig areas to linear transform determinant scaled 1.00 Computing inverse of GCAM Filling inverse of GCAM Allocating inv_gcam...(256, 256, 256) Saving inverse to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz GCAMwrite(/scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz) [INFO] Warpfield::convert(): converting GCAM ... [INFO] Warpfield::convert(): gcam [256 x 256 x 256] [INFO] Warpfield::convert(): gcam image [193 x 229 x 193] [INFO] Warpfield::convert(): gcam atlas [256 x 256 x 256] [INFO] Warpfield::convert(): total out of range voxel count: 0 [INFO] niiWrite(): MGZ_INTENT_WARPMAP => NIFTI_INTENT_DISPVECT, intent_code = 1006, dimensions = {5, 256, 256, 256, 1, 3, 1, 1} [INFO] niiWrite(): convert displacement from 0 to 3 mri_vol2vol --regheader --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz movvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz targvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz outvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1762863308 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -0.50000; 0.00000 1.00000 0.00000 13.50000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -20.00000; 0.00000 1.00000 0.00000 -20.00000; 0.00000 0.00000 1.00000 -2.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_convert -rt nearest /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz -at /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz mri_convert -rt nearest /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz -at /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz INFO: using NIfTI-1 sform (sform_code=1) reading from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: Reading transformation from file /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz... INFO: Applying transformation from file /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz... Applying morph_3d ... [INFO] niiRead(): intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [DEBUG] Warpfield::read() gcam->status = GCAM_LABELED setting orig areas to linear transform determinant scaled 1.00 morphing to atlas with resample type 0 writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz... mri_diff --po /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz mri_diff --po /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz diffcount 4653890 Volumes differ in pixel data maxdiff 127.82516479 at 63 114 29 0 tkmeditfv -f /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz -aux /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz Started at Fri Nov 7 02:35:52 CST 2025 Ended at Fri Nov 7 02:50:14 CST 2025 Fs-Synthmorph-Reg-Run-Time-Sec 862 Fs-Synthmorph-Reg-Run-Time-Min 14.37 Fs-Synthmorph-Reg-Run-Time-Hours 0.24 fs-synthmorph-reg Done #-------------------------------------------- #@# Nu Intensity Correction Fri Nov 7 02:50:14 CST 2025 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 8.0.0 Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux Fri Nov 7 02:50:14 CST 2025 tmpdir is ./tmp.mri_nu_correct.mni.1165742 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.1165742/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_binarize --i ./tmp.mri_nu_correct.mni.1165742/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.1165742/ones.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.1165742/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.1165742/ones.mgz sysname Linux hostname c-03-06 machine x86_64 user dal247378 input ./tmp.mri_nu_correct.mni.1165742/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.1165742/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777216 voxels in final mask Writing output to ./tmp.mri_nu_correct.mni.1165742/ones.mgz Count: 16777216 16777216.000000 16777216 100.000000 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1165742/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.1165742/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1165742/input.mean.dat 8.0.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1165742/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.1165742/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1165742/input.mean.dat sysname Linux hostname c-03-06 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.1165742/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.1165742/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1165742/ones.mgz --i ./tmp.mri_nu_correct.mni.1165742/nu0.mgz --sum ./tmp.mri_nu_correct.mni.1165742/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1165742/output.mean.dat 8.0.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1165742/ones.mgz --i ./tmp.mri_nu_correct.mni.1165742/nu0.mgz --sum ./tmp.mri_nu_correct.mni.1165742/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1165742/output.mean.dat sysname Linux hostname c-03-06 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.1165742/ones.mgz Loading ./tmp.mri_nu_correct.mni.1165742/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.1165742/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.1165742/nu0.mgz ./tmp.mri_nu_correct.mni.1165742/nu0.mgz mul 1.29260697292350021886 Packing Done packing Unpacking Saving result to './tmp.mri_nu_correct.mni.1165742/nu0.mgz' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 208156 mri_convert ./tmp.mri_nu_correct.mni.1165742/nu0.mgz nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.1165742/nu0.mgz nu.mgz --like orig.mgz reading from ./tmp.mri_nu_correct.mni.1165742/nu0.mgz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 3 seconds. FIRST_PERCENTILE 0.010000 WM_PERCENTILE 0.900000 MAX_R 50.000000 i1 = 4, i2 = 57 #mri_make_uchar# mapping 10 147 to 3 110 : b -5.55943 m 0.787092 : thresh 7.06326 maxsat 331.041 : nzero 11808880 nsat 0 Fri Nov 7 02:52:52 CST 2025 mri_nu_correct.mni done mri_add_xform_to_header -c /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Fri Nov 7 02:52:52 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 1.07987 -0.03636 -0.04297 -0.03923; 0.06002 1.06760 0.24149 -48.81013; 0.01792 -0.18516 1.13831 -0.42700; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 15 Starting OpenSpline(): npoints = 15 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 69 (69), valley at 51 (51) csf peak at 31, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 68 (68), valley at 50 (50) csf peak at 32, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 1 minutes and 5 seconds. #-------------------------------------- #@# MCADura Segmentation Fri Nov 7 02:53:58 CST 2025 mri_mcadura_seg --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/mca-dura.mgz --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm Fri Nov 7 02:53:58 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_mcadura_seg --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/mca-dura.mgz --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm -rwxr-x--- 1 root kdamme 13384 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_mcadura_seg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1168286 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_vol2vol --reg /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --mov /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.lh.nii.gz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/mcadura.prior.lh.nii.gz regio_read_register: loading lta Matrix from regfile: -1.12689 0.04985 0.03593 1.51347; 0.00721 -0.20919 1.21016 -53.96255; -0.08112 -1.10627 -0.19864 -11.97488; 0.00000 0.00000 0.00000 1.00000; Getting target volume geom from lta destination movvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.lh.nii.gz outvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/mcadura.prior.lh.nii.gz regfile /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1762923070 Final tkRAS-to-tkRAS Matrix is: -1.12689 0.04985 0.03593 1.51347; 0.00721 -0.20919 1.21016 -53.96255; -0.08112 -1.10627 -0.19864 -11.97488; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.12689 0.03593 -0.04985 241.01004; -0.08112 -0.19864 1.10627 20.68132; -0.00721 -1.21016 -0.20919 225.13651; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop-to-fov-mm 80 80 80 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/mcadura.prior.lh.nii.gz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/lh.crop.nii.gz CropToFoVmm 80 80 80 DoAbs = 0 Found 5664 voxels in mask (pct= 0.03) MRIcropToFoV(): thresh=0.001 FoV = (80,80,80) nhits=5664 centroid = (161.213,112.123,153.278) min = (134,90,136) max = (179,129,169) delta = (46,40,34) Region 121 72 113 80 80 80 121 72 113 80 80 80 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/lh.crop.nii.gz...done. mri_vol2vol --regheader --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz --targ /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/lh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.lh.crop.nii.gz movvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz targvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/lh.crop.nii.gz outvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.lh.crop.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1763237231 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -33.00000; 0.00000 1.00000 0.00000 25.00000; 0.00000 0.00000 1.00000 16.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 121.00000; 0.00000 1.00000 0.00000 72.00000; 0.00000 0.00000 1.00000 113.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.lh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.lh.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.lh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.lh.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/dumca.lh.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 2 inshape (72, 72, 72) features 24 (None, 72, 72, 72, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 Segmenting image 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.lh.crop.nii.gz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 1s 1s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.lh.mgz vmpcma: 7319820 done mri_vol2vol --regheader --interp nearest --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.lh.mgz --targ /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.lh.uncropped.mgz movvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.lh.mgz targvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.lh.uncropped.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1763320259 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 33.00000; 0.00000 1.00000 0.00000 -25.00000; 0.00000 0.00000 1.00000 -16.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -121.00000; 0.00000 1.00000 0.00000 -72.00000; 0.00000 0.00000 1.00000 -113.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --reg /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --mov /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.rh.nii.gz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/mcadura.prior.rh.nii.gz regio_read_register: loading lta Matrix from regfile: -1.12689 0.04985 0.03593 1.51347; 0.00721 -0.20919 1.21016 -53.96255; -0.08112 -1.10627 -0.19864 -11.97488; 0.00000 0.00000 0.00000 1.00000; Getting target volume geom from lta destination movvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.rh.nii.gz outvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/mcadura.prior.rh.nii.gz regfile /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1762845540 Final tkRAS-to-tkRAS Matrix is: -1.12689 0.04985 0.03593 1.51347; 0.00721 -0.20919 1.21016 -53.96255; -0.08112 -1.10627 -0.19864 -11.97488; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.12689 0.03593 -0.04985 241.01004; -0.08112 -0.19864 1.10627 20.68132; -0.00721 -1.21016 -0.20919 225.13651; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop-to-fov-mm 80 80 80 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/mcadura.prior.rh.nii.gz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/rh.crop.nii.gz CropToFoVmm 80 80 80 DoAbs = 0 Found 5947 voxels in mask (pct= 0.04) MRIcropToFoV(): thresh=0.001 FoV = (80,80,80) nhits=5947 centroid = (91.6183,113.485,149.563) min = (71,92,133) max = (116,130,167) delta = (46,39,35) Region 52 73 110 80 80 80 52 73 110 80 80 80 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/rh.crop.nii.gz...done. mri_vol2vol --regheader --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz --targ /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/rh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.rh.crop.nii.gz movvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz targvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/rh.crop.nii.gz outvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.rh.crop.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1763172979 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 36.00000; 0.00000 1.00000 0.00000 22.00000; 0.00000 0.00000 1.00000 15.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 52.00000; 0.00000 1.00000 0.00000 73.00000; 0.00000 0.00000 1.00000 110.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.rh.crop.nii.gz --left-right-reverse-pix /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.rh.crop.lrrev.nii.gz mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.rh.crop.nii.gz --left-right-reverse-pix /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.rh.crop.lrrev.nii.gz reading from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.rh.crop.nii.gz... WARNING: applying left-right reversal to the input pixels without changing geometry. This will likely make the volume geometry WRONG, so make sure you know what you are doing. Reversing pixels for the columns TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.rh.crop.lrrev.nii.gz... mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.rh.crop.lrrev.nii.gz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.lrrev.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.rh.crop.lrrev.nii.gz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.lrrev.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/dumca.lh.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 2 inshape (72, 72, 72) features 24 (None, 72, 72, 72, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 Segmenting image 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/invol.rh.crop.lrrev.nii.gz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 1s 1s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.lrrev.mgz vmpcma: 7319828 done mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.lrrev.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.mgz --left-right-swap-label-table /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/dumca.lh.index /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/dumca.rh.index --left-right-reverse-pix mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.lrrev.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.mgz --left-right-swap-label-table /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/dumca.lh.index /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/dumca.rh.index --left-right-reverse-pix reading from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.lrrev.mgz... Performing left-right swap of labels MRIlrswapSeg(): nswaps 531 WARNING: applying left-right reversal to the input pixels without changing geometry. This will likely make the volume geometry WRONG, so make sure you know what you are doing. Reversing pixels for the columns TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.mgz... mri_vol2vol --regheader --interp nearest --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.mgz --targ /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.uncropped.mgz movvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.mgz targvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.uncropped.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1763450351 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -36.00000; 0.00000 1.00000 0.00000 -22.00000; 0.00000 0.00000 1.00000 -15.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -52.00000; 0.00000 1.00000 0.00000 -73.00000; 0.00000 0.00000 1.00000 -110.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_concat /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.lh.uncropped.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.mri_mcadura_seg.1168286/seg.rh.uncropped.mgz --sum --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.ctab --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/mca-dura.mgz ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing sum across frames Writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/mca-dura.mgz fsvglrun freeview -neuro-view --hide-3d-slices --view coronal /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/mca-dura.mgz:isosurface=1:outline=1 Started at Fri Nov 7 02:53:58 CST 2025 Ended at Fri Nov 7 02:54:21 CST 2025 mri_mcadura_seg-Run-Time-Sec 23 mri_mcadura_seg Done #-------------------------------------- #@# VSinus Segmentation Fri Nov 7 02:54:21 CST 2025 mri_vsinus_seg --s sub-08YFFYY2_ses-00A --rca-synthseg --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm Fri Nov 7 02:54:21 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_vsinus_seg --s sub-08YFFYY2_ses-00A --rca-synthseg --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm -rwxr-x--- 1 root kdamme 20960 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_vsinus_seg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1173010 mri_vol2vol --mov /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz --lta /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --targ /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz Matrix from LTA: -1.12689 0.04985 0.03593 1.51346; 0.00721 -0.20919 1.21016 -53.96257; -0.08112 -1.10627 -0.19864 -11.97488; 0.00000 0.00000 0.00000 1.00000; /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz movvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz targvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz regfile /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1763073244 Final tkRAS-to-tkRAS Matrix is: -1.12689 0.04985 0.03593 1.51344; 0.00721 -0.20919 1.21016 -53.96263; -0.08112 -1.10627 -0.19864 -11.97488; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.12689 0.03593 -0.04985 241.01004; -0.08112 -0.19864 1.10627 20.68131; -0.00721 -1.21016 -0.20919 225.13640; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop 0 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz threshold mask volume at 0.001 cropping npad = 0 DoAbs = 0 Found 77247 voxels in mask (pct= 0.46) Computing bounding box, npad = 0, 0, 0, 0, 0, 0 68 23 28 121 120 83 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz...done. mri_binarize --crop-around-ras /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz nolta cras /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz 0 144 144 144 Getting cras from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz final ras2vox matrix -1.00000 -0.00000 -0.00000 128.50000; -0.00000 -0.00000 -1.00000 106.86925; -0.00000 1.00000 -0.00000 84.60291; -0.00000 -0.00000 -0.00000 1.00000; -------------------------- ostr LIA (144 144 144) (144 144 144) rasCenter 0 -15.1029 23.8692 crsCenter 128.5 83 69.5 MRIcropAroundCRS() vol size 256 256 256 center 128.5 83 69.5 fov 144 144 144 limits 58 201 12 155 -2 141 P0 70.5 -86.6029 94.8692 c_ras of new volume -1.5 -14.6029 22.8692 mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 --ctab /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab --keep_ac --conform --percentile 99.9 --vmp --output-base vsinus --logfile mri_vsinus_seg.log --fov 144 --threads 1 --no-cite-sclimbic --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 --ctab /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab --keep_ac --conform --percentile 99.9 --vmp --output-base vsinus --logfile mri_vsinus_seg.log --fov 144 --threads 1 --no-cite-sclimbic --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 6 inshape (144, 144, 144) features 24 (None, 144, 144, 144, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 Segmenting image 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 8s 8s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz vmpcma: 11232640 done mri_binarize --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/synthseg.rca.mgz --match 3 42 --inv --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri cmdline mri_binarize --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/synthseg.rca.mgz --match 3 42 --inv --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz sysname Linux hostname c-03-06 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/synthseg.rca.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz Binarizing based on matching values nMatch 2 0 3 1 42 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 533261 values in range Counting number of voxels in first frame Found 533261 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz Count: 533261 533261.000000 16777216 3.178483 mri_binarize done mri_vol2vol --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz --targ /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz --interp nearest --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/vsinus.mgz --regheader movvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz targvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/vsinus.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1762687536 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 2.00000; 0.00000 1.00000 0.00000 58.00000; 0.00000 0.00000 1.00000 -44.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -58.00000; 0.00000 1.00000 0.00000 -12.00000; 0.00000 0.00000 1.00000 2.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/vsinus.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/vsinus.mgz DoAbs = 0 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/vsinus.mgz...done. mri_segstats --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz --seg /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/vsinus.mgz --sum /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/vsinus.stats --subject sub-08YFFYY2_ses-00A --etiv 8.0.0 cwd cmdline mri_segstats --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz --seg /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/vsinus.mgz --sum /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/vsinus.stats --subject sub-08YFFYY2_ses-00A --etiv sysname Linux hostname c-03-06 machine x86_64 user dal247378 whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/vsinus.mgz Using embedded color table (and excluding seg 0) Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 6 segmentations Computing statistics for each segmentation Reporting on 5 segmentations Using PrintSegStat mri_segstats done fsvglrun freeview --hide-3d-slices --view coronal -neuro-view /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz:lock=1 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/vsinus.mgz:isosurface=1:outline=1 Started at Fri Nov 7 02:54:21 CST 2025 Ended at Fri Nov 7 02:54:44 CST 2025 Mri_Vsinus_Seg-Run-Time-Sec 23 Mri_Vsinus_Seg-Run-Time-Min 0.38 Mri_Vsinus_Seg-Run-Time-Hours 0.01 mri_vsinus_seg Done mri_mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/T1.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/synthstrip.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/brainmask.mgz DoAbs = 0 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/brainmask.mgz...done. #------------------------------------- #@# EM Registration Fri Nov 7 02:54:45 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca'... GCAread took 0 minutes and 1 seconds. average std = 7.2 using min determinant for regularization = 5.2 0 singular and 884 ill-conditioned covariance matrices regularized reading 'nu.mgz'... MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 5.9 or > 519.0 total sample mean = 79.1 (1017 zeros) ************************************************ spacing=8, using 2841 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2841, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=22.0 skull bounding box = (61, 35, 35) --> (193, 159, 196) finding center of left hemi white matter using (105, 76, 116) as brain centroid of Right_Cerebral_White_Matter... MRImask(): AllowDiffGeom = 1 mean wm in atlas = 107, using box (89,61,96) --> (121, 91,135) to find MRI wm before smoothing, mri peak at 107 robust fit to distribution - 107 +- 5.2 after smoothing, mri peak at 107, scaling input intensities by 1.000 scaling channel 0 by 1 initial log_p = -4.515 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.101848 @ (-10.526, 31.579, -10.526) max log p = -3.926594 @ (15.789, -5.263, 5.263) max log p = -3.832181 @ (-2.632, -7.895, -2.632) max log p = -3.832181 @ (0.000, 0.000, 0.000) max log p = -3.832181 @ (0.000, 0.000, 0.000) max log p = -3.832181 @ (0.000, 0.000, 0.000) max log p = -3.832181 @ (0.000, 0.000, 0.000) max log p = -3.832181 @ (0.000, 0.000, 0.000) Found translation: (2.6, 18.4, -7.9): log p = -3.832 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.702, old_max_log_p =-3.832 (thresh=-3.8) 1.06580 -0.13912 -0.01831 3.06855; 0.14032 1.05669 0.13912 -12.98376; 0.00000 -0.14032 1.06580 6.30225; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 45 seconds. **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.607, old_max_log_p =-3.702 (thresh=-3.7) 1.06596 -0.01698 0.13808 -24.91552; 0.00128 1.14814 0.13130 -2.65926; -0.13912 -0.12096 1.05908 23.30069; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 44 seconds. **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.607, old_max_log_p =-3.607 (thresh=-3.6) 1.06596 -0.01698 0.13808 -24.91552; 0.00128 1.14814 0.13130 -2.65926; -0.13912 -0.12096 1.05908 23.30069; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 iteration took 0 minutes and 44 seconds. **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.416, old_max_log_p =-3.607 (thresh=-3.6) 1.05371 -0.04429 0.02731 -5.52035; 0.03652 1.18572 0.17210 -15.08331; -0.03401 -0.16093 1.06248 9.14816; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 42 seconds. **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.416, old_max_log_p =-3.416 (thresh=-3.4) 1.05371 -0.04429 0.02731 -5.52035; 0.03652 1.18572 0.17210 -15.08331; -0.03401 -0.16093 1.06248 9.14816; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 iteration took 0 minutes and 42 seconds. **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.379, old_max_log_p =-3.416 (thresh=-3.4) 1.05783 -0.04195 0.00993 -4.38476; 0.03684 1.18839 0.16359 -14.90846; -0.01650 -0.15228 1.06666 6.13540; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 40 seconds. **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.364, old_max_log_p =-3.379 (thresh=-3.4) 1.06031 -0.04205 0.00995 -4.69223; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25175; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 39 seconds. **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.364, old_max_log_p =-3.364 (thresh=-3.4) 1.06279 -0.04215 0.00998 -5.00042; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25175; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2841 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.06279 -0.04215 0.00998 -5.00042; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25175; 0.00000 0.00000 0.00000 1.00000; nsamples 2841 Quasinewton: input matrix 1.06279 -0.04215 0.00998 -5.00042; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25175; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.06279 -0.04215 0.00998 -5.00042; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25175; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.364 (old=-4.515) transform before final EM align: 1.06279 -0.04215 0.00998 -5.00042; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25175; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315638 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.06279 -0.04215 0.00998 -5.00042; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25175; 0.00000 0.00000 0.00000 1.00000; nsamples 315638 Quasinewton: input matrix 1.06279 -0.04215 0.00998 -5.00042; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25175; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 012: -log(p) = 3.9 tol 0.000000 final transform: 1.06279 -0.04215 0.00998 -5.00042; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25175; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... #VMPC# mri_em_register VmPeak 768348 FSRUNTIME@ mri_em_register 0.1018 hours 1 threads registration took 6 minutes and 6 seconds. #-------------------------------------- #@# CA Normalize Fri Nov 7 03:00:51 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=22.0 skull bounding box = (61, 35, 35) --> (193, 160, 196) finding center of left hemi white matter using (105, 77, 116) as brain centroid of Right_Cerebral_White_Matter... mean wm in atlas = 107, using box (89,62,96) --> (121, 92,135) to find MRI wm before smoothing, mri peak at 107 robust fit to distribution - 107 +- 5.2 after smoothing, mri peak at 107, scaling input intensities by 1.000 scaling channel 0 by 1 using 246437 sample points... INFO: compute sample coordinates transform 1.06279 -0.04215 0.00998 -5.00042; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25175; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (127, 37, 36) --> (189, 133, 191) Left_Cerebral_White_Matter: limiting intensities to 96.0 --> 132.0 0 of 112 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (65, 40, 35) --> (127, 137, 192) Right_Cerebral_White_Matter: limiting intensities to 96.0 --> 132.0 0 of 50 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (129, 110, 61) --> (175, 148, 111) Left_Cerebellum_White_Matter: limiting intensities to 100.0 --> 132.0 0 of 16 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (87, 110, 58) --> (128, 149, 112) Right_Cerebellum_White_Matter: limiting intensities to 106.0 --> 132.0 7 of 12 (58.3%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (112, 103, 94) --> (144, 161, 122) Brain_Stem: limiting intensities to 88.0 --> 132.0 0 of 10 (0.0%) samples deleted using 200 total control points for intensity normalization... bias field = 0.954 +- 0.082 0 of 193 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (127, 37, 36) --> (189, 133, 191) Left_Cerebral_White_Matter: limiting intensities to 91.0 --> 132.0 0 of 232 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (65, 40, 35) --> (127, 137, 192) Right_Cerebral_White_Matter: limiting intensities to 91.0 --> 132.0 0 of 134 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (129, 110, 61) --> (175, 148, 111) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 46 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (87, 110, 58) --> (128, 149, 112) Right_Cerebellum_White_Matter: limiting intensities to 91.0 --> 132.0 35 of 75 (46.7%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (112, 103, 94) --> (144, 161, 122) Brain_Stem: limiting intensities to 88.0 --> 132.0 42 of 107 (39.3%) samples deleted using 594 total control points for intensity normalization... bias field = 0.980 +- 0.087 0 of 516 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (127, 37, 36) --> (189, 133, 191) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 3 of 309 (1.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (65, 40, 35) --> (127, 137, 192) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 286 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (129, 110, 61) --> (175, 148, 111) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 66 of 127 (52.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (87, 110, 58) --> (128, 149, 112) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 89 of 117 (76.1%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (112, 103, 94) --> (144, 161, 122) Brain_Stem: limiting intensities to 88.0 --> 132.0 139 of 171 (81.3%) samples deleted using 1010 total control points for intensity normalization... bias field = 1.013 +- 0.062 0 of 705 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 0 minutes and 54 seconds. #-------------------------------------- #@# EntoWM Segmentation Fri Nov 7 03:01:46 CST 2025 mri_entowm_seg --s sub-08YFFYY2_ses-00A --conform --threads 1 mri_sclimbic_seg --no-cite-sclimbic --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 --keep_ac --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.ctab --percentile 99.9 --vmp --output-base entowm --s sub-08YFFYY2_ses-00A --conform --threads 1 /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --no-cite-sclimbic --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 --keep_ac --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.ctab --percentile 99.9 --vmp --output-base entowm --s sub-08YFFYY2_ses-00A --conform --threads 1 Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 5 inshape (160, 160, 160) features 24 (None, 160, 160, 160, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 Using subject directory /scratch/juno/dal247378/batches/batch_017 Computed eTIV from talairach Segmenting subject sub-08YFFYY2_ses-00A 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/nu.mgz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 12s 12s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/entowm.mgz Wrote volume stats to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/entowm.stats vmpcma: 11264508 done Started at Fri Nov 7 03:01:46 CST 2025 Started at Fri Nov 7 03:01:46 CST 2025 Ended at Fri Nov 7 03:02:04 CST 2025 Ended at Fri Nov 7 03:02:04 CST 2025 mri_entowm_seg-Run-Time-Sec 18 mri_entowm_seg-Run-Time-Sec 18 mri_entowm_seg-Run-Time-Min 0.36 mri_entowm_seg-Run-Time-Min 0.36 mri_entowm_seg-Run-Time-Hours 0.00 mri_entowm_seg-Run-Time-Hours 0.00 mri_entowm_seg Done mri_entowm_seg Done 1 3006 836 857.8839 wm-lh-entorhinal 2 3201 196 210.3025 wm-lh-gyrus-ambiens 3 4006 859 870.8378 wm-rh-entorhinal 4 4201 231 243.4021 wm-rh-gyrus-ambiens #-------------------------------------- #@# CC Seg Fri Nov 7 03:02:04 CST 2025 seg2cc --s sub-08YFFYY2_ses-00A Fri Nov 7 03:02:04 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/seg2cc --s sub-08YFFYY2_ses-00A freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a seg2cc 8.0.0 Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri IsConformed yes Fri Nov 7 03:02:04 CST 2025 mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta transforms/cc_up.lta sub-08YFFYY2_ses-00A will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as transforms/cc_up.lta reading aseg from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/aseg.auto_noCCseg.mgz reading norm from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/norm.mgz 24507 voxels in left wm, 37228 in right wm, xrange [122, 129] searching rotation angles z=[-6 8], y=[-5 9] searching scale 1 Z rot -6.2 searching scale 1 Z rot -5.9 searching scale 1 Z rot -5.7 searching scale 1 Z rot -5.4 searching scale 1 Z rot -5.2 searching scale 1 Z rot -4.9 searching scale 1 Z rot -4.7 searching scale 1 Z rot -4.4 searching scale 1 Z rot -4.2 searching scale 1 Z rot -3.9 searching scale 1 Z rot -3.7 searching scale 1 Z rot -3.4 searching scale 1 Z rot -3.2 searching scale 1 Z rot -2.9 searching scale 1 Z rot -2.7 searching scale 1 Z rot -2.4 searching scale 1 Z rot -2.2 searching scale 1 Z rot -1.9 searching scale 1 Z rot -1.7 searching scale 1 Z rot -1.4 searching scale 1 Z rot -1.2 searching scale 1 Z rot -0.9 searching scale 1 Z rot -0.7 searching scale 1 Z rot -0.4 searching scale 1 Z rot -0.2 searching scale 1 Z rot 0.1 searching scale 1 Z rot 0.3 searching scale 1 Z rot 0.6 searching scale 1 Z rot 0.8 searching scale 1 Z rot 1.1 searching scale 1 Z rot 1.3 searching scale 1 Z rot 1.6 searching scale 1 Z rot 1.8 searching scale 1 Z rot 2.1 searching scale 1 Z rot 2.3 searching scale 1 Z rot 2.6 searching scale 1 Z rot 2.8 searching scale 1 Z rot 3.1 searching scale 1 Z rot 3.3 searching scale 1 Z rot 3.6 searching scale 1 Z rot 3.8 searching scale 1 Z rot 4.1 searching scale 1 Z rot 4.3 searching scale 1 Z rot 4.6 searching scale 1 Z rot 4.8 searching scale 1 Z rot 5.1 searching scale 1 Z rot 5.3 searching scale 1 Z rot 5.6 searching scale 1 Z rot 5.8 searching scale 1 Z rot 6.1 searching scale 1 Z rot 6.3 searching scale 1 Z rot 6.6 searching scale 1 Z rot 6.8 searching scale 1 Z rot 7.1 searching scale 1 Z rot 7.3 searching scale 1 Z rot 7.6 global minimum found at slice 126.0, rotations (1.59, 0.82) final transformation (x=126.0, yr=1.592, zr=0.825): 0.99951 -0.01439 0.02778 0.01862; 0.01439 0.99990 0.00040 46.14956; -0.02778 0.00000 0.99961 16.54474; 0.00000 0.00000 0.00000 1.00000; updating x range to be [127, 130] in xformed coordinates best xformed slice 128 min_x_fornix = 133 min_x_fornix = 135 min_x_fornix = 138 min_x_fornix = 135 min_x_fornix = 133 cc center is found at 128 80 115 eigenvectors: 0.00014 0.00038 1.00000; 0.01595 -0.99987 0.00038; 0.99987 0.01595 -0.00015; error in mid anterior detected - correcting... writing aseg with callosum to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/aseg.auto.mgz... corpus callosum segmentation took 0.3 minutes #VMPC# mri_cc VmPeak 431532 mri_cc done Fri Nov 7 03:02:23 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri Started at Fri Nov 7 03:02:04 CST 2025 Ended at Fri Nov 7 03:02:23 CST 2025 Seg2cc-Run-Time-Sec 19 Seg2cc-Run-Time-Hours 0.01 seg2cc Done #-------------------------------------- #@# Merge ASeg Fri Nov 7 03:02:23 CST 2025 cp aseg.auto.mgz aseg.presurf.mgz #-------------------------------------------- #@# Intensity Normalization2 Fri Nov 7 03:02:23 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_normalize -seed 1234 -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading mri_src from norm.mgz... Reading aseg aseg.presurf.mgz aseg read with width 256 (src width 256) normalizing image... NOT doing gentle normalization with control points/label processing with aseg removing outliers in the aseg WM... 2075 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 69 (69), valley at 0 (-1) csf peak at 34, setting threshold to 57 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 68 (68), valley at 0 (-1) csf peak at 34, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 1 minutes and 36 seconds. #-------------------------------------------- #@# Mask BFS Fri Nov 7 03:04:00 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1378313 voxels in mask (pct= 8.22) maskval=0, outval=0 Writing masked volume to brain.finalsurfs.mgz...done. mri_mask -oval 1 -invert brain.finalsurfs.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/mca-dura.mgz brain.finalsurfs.mgz setting masked output voxels to 1.0 instead of 0 Inverting and binarizing mask thresh = 0.5 count 16776086 Resetting threshold to 0.5 DoAbs = 0 Found 16776086 voxels in mask (pct= 99.99) maskval=0, outval=1 Writing masked volume to brain.finalsurfs.mgz...done. mri_mask -oval 1 -invert brain.finalsurfs.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/vsinus.mgz brain.finalsurfs.mgz setting masked output voxels to 1.0 instead of 0 Inverting and binarizing mask thresh = 0.5 count 16766387 Resetting threshold to 0.5 DoAbs = 0 Found 16766387 voxels in mask (pct= 99.94) maskval=0, outval=1 Writing masked volume to brain.finalsurfs.mgz...done. mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 2 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 2 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz Fixing entowm 2 255 255 MRIfixEntoWM(): 255 255 Level=2 MRIfixEntoWM(): nchanged = 427 mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_wit supposed to be reproducible but seed not set LabelAmygalaCortalJunction((): nhits = 3476 Fixing ACJ 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 654 cp brain.finalsurfs.mgz brain.finalsurfs.manedit.mgz #-------------------------------------------- #@# WM Segmentation Fri Nov 7 03:04:04 CST 2025 AntsDenoiseImageFs -i brain.mgz -o antsdn.brain.mgz mri_segment -wsizemm 13 -mprage antsdn.brain.mgz wm.seg.mgz wsizemm = 13, voxres = 1, wsize = 13 Widening wm low from 89 to 79 assuming input volume is MGH (Van der Kouwe) MP-RAGE wm mean: 110 wsize: 13 wm low: 79 wm hi: 125 gray low: 30 gray hi: 99 Doing initial trinary intensity segmentation MRIintensitySegmentation() wm_low=79, wm_hi=125, gray_hi=99 white = 308647, nonwhite = 16230582, ambig = 237987, nmask = 0 Using local statistics to label ambiguous voxels Autodetecting stats Computing class statistics for intensity windows... CCS WM (104.0): 103.7 +- 5.4 [79.0 --> 125.0] CCS GM (72.0) : 71.7 +- 9.1 [30.0 --> 95.0] white_mean 103.669 white_sigma 5.40019 gray_mean 71.6998 gray_sigma 9.12698 setting bottom of white matter range wm_low to 80.8 setting top of gray matter range gray_hi to 90.0 wm_low 80.8268 wm_hi 125 gray_low 30 gray_hi 89.9538 Redoing initial intensity segmentation... MRIintensitySegmentation() wm_low=80.8268, wm_hi=125, gray_hi=89.9538 white = 415223, nonwhite = 16259840, ambig = 102153, nmask = 0 Recomputing local statistics to label ambiguous voxels... wm_low 80.8268 wm_hi 125 gray_low 30 gray_hi 89.9538 using local geometry to label remaining ambiguous voxels... polvwsize = 5, polvlen = 3, gray_hi = 89.9538, wm_low = 80.8268 MRIcpolvMedianCurveSegment(): wsize=5, len=3, gmhi=89.9538, wmlow=80.8268 96548 voxels processed (0.58%) 39144 voxels white (0.23%) 57404 voxels non-white (0.34%) Reclassifying voxels using Gaussian border classifier niter=1 MRIreclassify(): wm_low=75.8268, gray_hi=89.9538, wsize=13 182431 voxels tested (1.09%) 38022 voxels changed (0.23%) 43323 multi-scale searches (0.26%) Recovering bright white MRIrecoverBrightWhite() wm_low 80.8268 wm_hi 125 slack 5.40019 pct_thresh 0.33 intensity_thresh 130.4 nvox_thresh 8.58 15 voxels tested (0.00%) 10 voxels changed (0.00%) removing voxels with positive offset direction... MRIremoveWrongDirection() wsize=3, lowthr=75.8268, hithr=89.9538 smoothing input volume with sigma = 0.250 48876 voxels tested (0.29%) 10868 voxels changed (0.06%) thicken = 1 removing 1-dimensional structures... MRIremove1dStructures(): max_iter=10000, thresh=2, WM_MIN_VAL=5 4312 sparsely connected voxels removed in 1 iterations thickening thin strands.... thickness 4 nsegments 20 wm_hi 125 2386 diagonally connected voxels added... MRIthickenThinWMStrands(): thickness=4, nsegments=20 20 segments, 6455 filled MRIfindBrightNonWM(): 25 bright non-wm voxels segmented. MRIfilterMorphology() WM_MIN_VAL=5, DIAGONAL_FILL=230 white matter segmentation took 0.6 minutes writing output to wm.seg.mgz... mri_edit_wm_with_aseg -keep-in -fix-ento-wm entowm.mgz 3 255 255 -fix-acj aseg.presurf.mgz 255 255 -fill-seg-wm -fix-scm-ha 1 wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz mri_edit_wm_with_aseg -keep-in -fix-ento-wm entowm.mgz 3 255 255 -fix-acj aseg.presurf.mgz 255 255 -fill-seg-wm -fix-scm-ha 1 wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz preserving editing changes in input volume... mri_edit_wm_wit supposed to be reproducible but seed not set auto filling took 0.44 minutes Fixing entowm 3 255 255 LabelAmygalaCortalJunction((): nhits = 3476 Fixing ACJ 255 255 FixSCM HA 1 reading wm segmentation from wm.seg.mgz... 0 voxels added to wm to prevent paths from MTL structures to cortex 7161 additional wm voxels added 0 additional wm voxels added SEG EDIT: 224917 voxels turned on, 32557 voxels turned off. Dilating 1 voxels in 3d propagating editing to output volume from wm.seg.mgz MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 2122 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 654 writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 27 found - 27 modified | TOTAL: 27 pass 2 (xy+): 0 found - 27 modified | TOTAL: 27 pass 1 (xy-): 23 found - 23 modified | TOTAL: 50 pass 2 (xy-): 0 found - 23 modified | TOTAL: 50 pass 1 (yz+): 27 found - 27 modified | TOTAL: 77 pass 2 (yz+): 0 found - 27 modified | TOTAL: 77 pass 1 (yz-): 30 found - 30 modified | TOTAL: 107 pass 2 (yz-): 0 found - 30 modified | TOTAL: 107 pass 1 (xz+): 10 found - 10 modified | TOTAL: 117 pass 2 (xz+): 0 found - 10 modified | TOTAL: 117 pass 1 (xz-): 27 found - 27 modified | TOTAL: 144 pass 2 (xz-): 0 found - 27 modified | TOTAL: 144 Iteration Number : 1 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 8 found - 8 modified | TOTAL: 10 pass 2 (+++): 0 found - 8 modified | TOTAL: 10 pass 1 (+++): 2 found - 2 modified | TOTAL: 12 pass 2 (+++): 0 found - 2 modified | TOTAL: 12 pass 1 (+++): 2 found - 2 modified | TOTAL: 14 pass 2 (+++): 0 found - 2 modified | TOTAL: 14 Iteration Number : 1 pass 1 (++): 155 found - 155 modified | TOTAL: 155 pass 2 (++): 0 found - 155 modified | TOTAL: 155 pass 1 (+-): 138 found - 138 modified | TOTAL: 293 pass 2 (+-): 0 found - 138 modified | TOTAL: 293 pass 1 (--): 159 found - 159 modified | TOTAL: 452 pass 2 (--): 0 found - 159 modified | TOTAL: 452 pass 1 (-+): 99 found - 99 modified | TOTAL: 551 pass 2 (-+): 0 found - 99 modified | TOTAL: 551 Iteration Number : 2 pass 1 (xy+): 2 found - 2 modified | TOTAL: 2 pass 2 (xy+): 0 found - 2 modified | TOTAL: 2 pass 1 (xy-): 0 found - 0 modified | TOTAL: 2 pass 1 (yz+): 1 found - 1 modified | TOTAL: 3 pass 2 (yz+): 0 found - 1 modified | TOTAL: 3 pass 1 (yz-): 0 found - 0 modified | TOTAL: 3 pass 1 (xz+): 0 found - 0 modified | TOTAL: 3 pass 1 (xz-): 2 found - 2 modified | TOTAL: 5 pass 2 (xz-): 0 found - 2 modified | TOTAL: 5 Iteration Number : 2 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 1 found - 1 modified | TOTAL: 2 pass 2 (--): 0 found - 1 modified | TOTAL: 2 pass 1 (-+): 1 found - 1 modified | TOTAL: 3 pass 2 (-+): 0 found - 1 modified | TOTAL: 3 Iteration Number : 3 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 0 found - 0 modified | TOTAL: 1 pass 1 (yz-): 0 found - 0 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 720 (out of 467071: 0.154152) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done Fixing entowm in wm.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 3 255 255 wm.mgz wm.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 3 255 255 wm.mgz wm.mgz Fixing entowm 3 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 2122 Fixing ACJ in wm.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 wm.mgz wm.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 wm.mgz wm.mgz mri_edit_wm_wit supposed to be reproducible but seed not set LabelAmygalaCortalJunction((): nhits = 3476 Fixing ACJ 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 654 #-------------------------------------------- #@# Fill Fri Nov 7 03:05:35 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.presurf.mgz -ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/SubCorticalMassLUT.txt wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.presurf.mgz... done. searching for cutting planes...voxel to talairach voxel transform 1.06279 -0.04215 0.00998 -5.00043; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25176; 0.00000 0.00000 0.00000 1.00000; reading input volume... wm.mgzvoxel to talairach voxel transform 1.06279 -0.04215 0.00998 -5.00043; 0.03675 1.18560 0.16321 -14.59393; -0.01648 -0.15210 1.06541 6.25176; 0.00000 0.00000 0.00000 1.00000; reading segmented volume aseg.presurf.mgz removing CC from segmentation Looking for area (min, max) = (350, 1400) area[0] = 2836 (min = 350, max = 1400), aspect = 1.30 (min = 0.10, max = 0.75) need search nearby using seed (128, 116, 88), TAL = (0.0, -40.0, 12.0) talairach voxel to voxel transform 0.93961 0.03165 -0.01365 5.24571; -0.03053 0.82617 -0.12627 12.69381; 0.01018 0.11844 0.92037 -3.97456; 0.00000 0.00000 0.00000 1.00000; segmentation indicates cc at (128, 116, 88) --> (0.0, -40.0, 12.0) done. filling took 0.6 minutes talairach cc position changed to (0.00, -40.00, 12.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(18.00, -40.00, 12.00) SRC: (111.07, 94.06, 91.88) search lh wm seed point around talairach space (-18.00, -40.00, 12.00), SRC: (144.90, 92.96, 92.24) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram for separating WM into two hemispheres ... Find the largest connected component for each hemisphere ... Embedding colortable mri_fill done, writing output to filled.mgz... cp filled.mgz filled.auto.mgz #-------------------------------------------- #@# Tessellate lh Fri Nov 7 03:06:11 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 8 found - 8 modified | TOTAL: 9 pass 2 (yz+): 0 found - 8 modified | TOTAL: 9 pass 1 (yz-): 4 found - 4 modified | TOTAL: 13 pass 2 (yz-): 0 found - 4 modified | TOTAL: 13 pass 1 (xz+): 2 found - 2 modified | TOTAL: 15 pass 2 (xz+): 0 found - 2 modified | TOTAL: 15 pass 1 (xz-): 1 found - 1 modified | TOTAL: 16 pass 2 (xz-): 0 found - 1 modified | TOTAL: 16 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 1 found - 1 modified | TOTAL: 1 pass 2 (--): 0 found - 1 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 1 found - 1 modified | TOTAL: 1 pass 2 (yz+): 0 found - 1 modified | TOTAL: 1 pass 1 (yz-): 0 found - 0 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 18 (out of 225705: 0.007975) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix 8.0.0 8.0.0 slice 40: 471 vertices, 533 faces slice 50: 4774 vertices, 5007 faces slice 60: 12810 vertices, 13105 faces slice 70: 22847 vertices, 23194 faces slice 80: 33558 vertices, 33885 faces slice 90: 44223 vertices, 44607 faces slice 100: 55805 vertices, 56195 faces slice 110: 66547 vertices, 66902 faces slice 120: 76520 vertices, 76868 faces slice 130: 86347 vertices, 86698 faces slice 140: 95557 vertices, 95846 faces slice 150: 102823 vertices, 103052 faces slice 160: 109205 vertices, 109436 faces slice 170: 115049 vertices, 115259 faces slice 180: 119835 vertices, 120002 faces slice 190: 122962 vertices, 123031 faces slice 200: 123330 vertices, 123340 faces slice 210: 123330 vertices, 123340 faces slice 220: 123330 vertices, 123340 faces slice 230: 123330 vertices, 123340 faces slice 240: 123330 vertices, 123340 faces slice 250: 123330 vertices, 123340 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 123330 voxel in cpt #1: X=-10 [v=123330,e=370020,f=246680] located at (-25.263983, -20.714514, 40.189053) For the whole surface: X=-10 [v=123330,e=370020,f=246680] One single component has been found nothing to do done #-------------------------------------------- #@# Tessellate rh Fri Nov 7 03:06:14 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 1 found - 1 modified | TOTAL: 1 pass 2 (xy-): 0 found - 1 modified | TOTAL: 1 pass 1 (yz+): 7 found - 7 modified | TOTAL: 8 pass 2 (yz+): 0 found - 7 modified | TOTAL: 8 pass 1 (yz-): 8 found - 8 modified | TOTAL: 16 pass 2 (yz-): 0 found - 8 modified | TOTAL: 16 pass 1 (xz+): 0 found - 0 modified | TOTAL: 16 pass 1 (xz-): 0 found - 0 modified | TOTAL: 16 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 1 found - 1 modified | TOTAL: 2 pass 2 (--): 0 found - 1 modified | TOTAL: 2 pass 1 (-+): 0 found - 0 modified | TOTAL: 2 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 18 (out of 224016: 0.008035) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix 8.0.0 8.0.0 slice 40: 762 vertices, 851 faces slice 50: 5531 vertices, 5746 faces slice 60: 13261 vertices, 13566 faces slice 70: 22986 vertices, 23341 faces slice 80: 33648 vertices, 34019 faces slice 90: 44924 vertices, 45331 faces slice 100: 57007 vertices, 57394 faces slice 110: 67553 vertices, 67907 faces slice 120: 77560 vertices, 77907 faces slice 130: 86918 vertices, 87236 faces slice 140: 95788 vertices, 96073 faces slice 150: 102355 vertices, 102600 faces slice 160: 108427 vertices, 108685 faces slice 170: 114077 vertices, 114286 faces slice 180: 118437 vertices, 118582 faces slice 190: 121468 vertices, 121526 faces slice 200: 121662 vertices, 121680 faces slice 210: 121662 vertices, 121680 faces slice 220: 121662 vertices, 121680 faces slice 230: 121662 vertices, 121680 faces slice 240: 121662 vertices, 121680 faces slice 250: 121662 vertices, 121680 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 121662 voxel in cpt #1: X=-18 [v=121662,e=365040,f=243360] located at (28.019037, -21.995256, 39.976952) For the whole surface: X=-18 [v=121662,e=365040,f=243360] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 lh Fri Nov 7 03:06:16 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Smooth1 rh Fri Nov 7 03:06:18 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Fri Nov 7 03:06:19 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix Not saving sulc Reading ../surf/lh.smoothwm.nofix avg radius = 44.9 mm, total surface area = 66516 mm^2 step 000: RMS=0.147 (target=0.015) step 005: RMS=0.110 (target=0.015) step 010: RMS=0.081 (target=0.015) step 015: RMS=0.068 (target=0.015) step 020: RMS=0.057 (target=0.015) step 025: RMS=0.050 (target=0.015) step 030: RMS=0.044 (target=0.015) step 035: RMS=0.039 (target=0.015) step 040: RMS=0.036 (target=0.015) step 045: RMS=0.034 (target=0.015) step 050: RMS=0.033 (target=0.015) step 055: RMS=0.032 (target=0.015) step 060: RMS=0.032 (target=0.015) writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.2 minutes inflation complete. Not saving sulc mris_inflate utimesec 11.337401 mris_inflate stimesec 0.751682 mris_inflate ru_maxrss 197540 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 464001 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 8680 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 139 mris_inflate ru_nivcsw 19 #-------------------------------------------- #@# Inflation1 rh Fri Nov 7 03:06:32 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 44.7 mm, total surface area = 65939 mm^2 step 000: RMS=0.147 (target=0.015) step 005: RMS=0.111 (target=0.015) step 010: RMS=0.081 (target=0.015) step 015: RMS=0.067 (target=0.015) step 020: RMS=0.057 (target=0.015) step 025: RMS=0.050 (target=0.015) step 030: RMS=0.044 (target=0.015) step 035: RMS=0.039 (target=0.015) step 040: RMS=0.036 (target=0.015) step 045: RMS=0.033 (target=0.015) step 050: RMS=0.032 (target=0.015) step 055: RMS=0.031 (target=0.015) step 060: RMS=0.030 (target=0.015) writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.2 minutes inflation complete. Not saving sulc mris_inflate utimesec 11.165121 mris_inflate stimesec 0.592552 mris_inflate ru_maxrss 194676 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 382754 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 8560 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 139 mris_inflate ru_nivcsw 16 #-------------------------------------------- #@# QSphere lh Fri Nov 7 03:06:44 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 scaling brain by 0.320... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 1.04 +- 0.58 (0.00-->7.16) (max @ vno 46200 --> 46201) face area 0.03 +- 0.03 (-0.19-->0.81) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.614, avgs=0 005/300: dt: 0.9000, rms radial error=176.354, avgs=0 010/300: dt: 0.9000, rms radial error=175.798, avgs=0 015/300: dt: 0.9000, rms radial error=175.066, avgs=0 020/300: dt: 0.9000, rms radial error=174.232, avgs=0 025/300: dt: 0.9000, rms radial error=173.340, avgs=0 030/300: dt: 0.9000, rms radial error=172.416, avgs=0 035/300: dt: 0.9000, rms radial error=171.480, avgs=0 040/300: dt: 0.9000, rms radial error=170.538, avgs=0 045/300: dt: 0.9000, rms radial error=169.592, avgs=0 050/300: dt: 0.9000, rms radial error=168.648, avgs=0 055/300: dt: 0.9000, rms radial error=167.706, avgs=0 060/300: dt: 0.9000, rms radial error=166.767, avgs=0 065/300: dt: 0.9000, rms radial error=165.833, avgs=0 070/300: dt: 0.9000, rms radial error=164.903, avgs=0 075/300: dt: 0.9000, rms radial error=163.978, avgs=0 080/300: dt: 0.9000, rms radial error=163.058, avgs=0 085/300: dt: 0.9000, rms radial error=162.145, avgs=0 090/300: dt: 0.9000, rms radial error=161.236, avgs=0 095/300: dt: 0.9000, rms radial error=160.333, avgs=0 100/300: dt: 0.9000, rms radial error=159.434, avgs=0 105/300: dt: 0.9000, rms radial error=158.541, avgs=0 110/300: dt: 0.9000, rms radial error=157.652, avgs=0 115/300: dt: 0.9000, rms radial error=156.768, avgs=0 120/300: dt: 0.9000, rms radial error=155.889, avgs=0 125/300: dt: 0.9000, rms radial error=155.014, avgs=0 130/300: dt: 0.9000, rms radial error=154.145, avgs=0 135/300: dt: 0.9000, rms radial error=153.279, avgs=0 140/300: dt: 0.9000, rms radial error=152.419, avgs=0 145/300: dt: 0.9000, rms radial error=151.563, avgs=0 150/300: dt: 0.9000, rms radial error=150.712, avgs=0 155/300: dt: 0.9000, rms radial error=149.865, avgs=0 160/300: dt: 0.9000, rms radial error=149.023, avgs=0 165/300: dt: 0.9000, rms radial error=148.186, avgs=0 170/300: dt: 0.9000, rms radial error=147.353, avgs=0 175/300: dt: 0.9000, rms radial error=146.525, avgs=0 180/300: dt: 0.9000, rms radial error=145.702, avgs=0 185/300: dt: 0.9000, rms radial error=144.883, avgs=0 190/300: dt: 0.9000, rms radial error=144.068, avgs=0 195/300: dt: 0.9000, rms radial error=143.258, avgs=0 200/300: dt: 0.9000, rms radial error=142.453, avgs=0 205/300: dt: 0.9000, rms radial error=141.652, avgs=0 210/300: dt: 0.9000, rms radial error=140.855, avgs=0 215/300: dt: 0.9000, rms radial error=140.063, avgs=0 220/300: dt: 0.9000, rms radial error=139.275, avgs=0 225/300: dt: 0.9000, rms radial error=138.492, avgs=0 230/300: dt: 0.9000, rms radial error=137.713, avgs=0 235/300: dt: 0.9000, rms radial error=136.939, avgs=0 240/300: dt: 0.9000, rms radial error=136.169, avgs=0 245/300: dt: 0.9000, rms radial error=135.403, avgs=0 250/300: dt: 0.9000, rms radial error=134.642, avgs=0 255/300: dt: 0.9000, rms radial error=133.884, avgs=0 260/300: dt: 0.9000, rms radial error=133.131, avgs=0 265/300: dt: 0.9000, rms radial error=132.382, avgs=0 270/300: dt: 0.9000, rms radial error=131.638, avgs=0 275/300: dt: 0.9000, rms radial error=130.897, avgs=0 280/300: dt: 0.9000, rms radial error=130.161, avgs=0 285/300: dt: 0.9000, rms radial error=129.428, avgs=0 290/300: dt: 0.9000, rms radial error=128.700, avgs=0 295/300: dt: 0.9000, rms radial error=127.976, avgs=0 300/300: dt: 0.9000, rms radial error=127.256, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 14218.52 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00050 epoch 2 (K=40.0), pass 1, starting sse = 2219.67 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00072 epoch 3 (K=160.0), pass 1, starting sse = 182.91 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.13/19 = 0.00664 epoch 4 (K=640.0), pass 1, starting sse = 8.00 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.13/22 = 0.00605 final distance error %100000.00 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.0209 hours FSRUNTIME@ mris_sphere 0.0209 hours 1 threads #VMPC# mris_sphere VmPeak 451580 mris_sphere done #-------------------------------------------- #@# QSphere rh Fri Nov 7 03:07:59 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 scaling brain by 0.322... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 1.05 +- 0.58 (0.00-->7.58) (max @ vno 88384 --> 88411) face area 0.03 +- 0.03 (-0.25-->0.95) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.619, avgs=0 005/300: dt: 0.9000, rms radial error=176.358, avgs=0 010/300: dt: 0.9000, rms radial error=175.797, avgs=0 015/300: dt: 0.9000, rms radial error=175.060, avgs=0 020/300: dt: 0.9000, rms radial error=174.221, avgs=0 025/300: dt: 0.9000, rms radial error=173.325, avgs=0 030/300: dt: 0.9000, rms radial error=172.397, avgs=0 035/300: dt: 0.9000, rms radial error=171.454, avgs=0 040/300: dt: 0.9000, rms radial error=170.512, avgs=0 045/300: dt: 0.9000, rms radial error=169.568, avgs=0 050/300: dt: 0.9000, rms radial error=168.625, avgs=0 055/300: dt: 0.9000, rms radial error=167.684, avgs=0 060/300: dt: 0.9000, rms radial error=166.748, avgs=0 065/300: dt: 0.9000, rms radial error=165.815, avgs=0 070/300: dt: 0.9000, rms radial error=164.887, avgs=0 075/300: dt: 0.9000, rms radial error=163.964, avgs=0 080/300: dt: 0.9000, rms radial error=163.046, avgs=0 085/300: dt: 0.9000, rms radial error=162.133, avgs=0 090/300: dt: 0.9000, rms radial error=161.226, avgs=0 095/300: dt: 0.9000, rms radial error=160.323, avgs=0 100/300: dt: 0.9000, rms radial error=159.425, avgs=0 105/300: dt: 0.9000, rms radial error=158.532, avgs=0 110/300: dt: 0.9000, rms radial error=157.644, avgs=0 115/300: dt: 0.9000, rms radial error=156.761, avgs=0 120/300: dt: 0.9000, rms radial error=155.882, avgs=0 125/300: dt: 0.9000, rms radial error=155.009, avgs=0 130/300: dt: 0.9000, rms radial error=154.140, avgs=0 135/300: dt: 0.9000, rms radial error=153.276, avgs=0 140/300: dt: 0.9000, rms radial error=152.416, avgs=0 145/300: dt: 0.9000, rms radial error=151.561, avgs=0 150/300: dt: 0.9000, rms radial error=150.710, avgs=0 155/300: dt: 0.9000, rms radial error=149.865, avgs=0 160/300: dt: 0.9000, rms radial error=149.023, avgs=0 165/300: dt: 0.9000, rms radial error=148.187, avgs=0 170/300: dt: 0.9000, rms radial error=147.354, avgs=0 175/300: dt: 0.9000, rms radial error=146.527, avgs=0 180/300: dt: 0.9000, rms radial error=145.704, avgs=0 185/300: dt: 0.9000, rms radial error=144.886, avgs=0 190/300: dt: 0.9000, rms radial error=144.072, avgs=0 195/300: dt: 0.9000, rms radial error=143.263, avgs=0 200/300: dt: 0.9000, rms radial error=142.458, avgs=0 205/300: dt: 0.9000, rms radial error=141.658, avgs=0 210/300: dt: 0.9000, rms radial error=140.862, avgs=0 215/300: dt: 0.9000, rms radial error=140.070, avgs=0 220/300: dt: 0.9000, rms radial error=139.283, avgs=0 225/300: dt: 0.9000, rms radial error=138.500, avgs=0 230/300: dt: 0.9000, rms radial error=137.722, avgs=0 235/300: dt: 0.9000, rms radial error=136.947, avgs=0 240/300: dt: 0.9000, rms radial error=136.177, avgs=0 245/300: dt: 0.9000, rms radial error=135.412, avgs=0 250/300: dt: 0.9000, rms radial error=134.650, avgs=0 255/300: dt: 0.9000, rms radial error=133.893, avgs=0 260/300: dt: 0.9000, rms radial error=133.140, avgs=0 265/300: dt: 0.9000, rms radial error=132.391, avgs=0 270/300: dt: 0.9000, rms radial error=131.647, avgs=0 275/300: dt: 0.9000, rms radial error=130.906, avgs=0 280/300: dt: 0.9000, rms radial error=130.170, avgs=0 285/300: dt: 0.9000, rms radial error=129.438, avgs=0 290/300: dt: 0.9000, rms radial error=128.710, avgs=0 295/300: dt: 0.9000, rms radial error=127.986, avgs=0 300/300: dt: 0.9000, rms radial error=127.266, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 13997.82 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00049 epoch 2 (K=40.0), pass 1, starting sse = 2182.36 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00045 epoch 3 (K=160.0), pass 1, starting sse = 185.93 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.15/18 = 0.00850 epoch 4 (K=640.0), pass 1, starting sse = 7.60 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.19/21 = 0.00881 final distance error %100000.00 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.0201 hours FSRUNTIME@ mris_sphere 0.0201 hours 1 threads #VMPC# mris_sphere VmPeak 448856 mris_sphere done #@# Fix Topology lh Fri Nov 7 03:09:11 CST 2025 mris_fix_topology -threads 1 -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 -threads 1 sub-08YFFYY2_ses-00A lh Setting OMP_NUM_THREADS=1 reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 Setting OMP_NUM_THREADS=1 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 8.0.0 8.0.0 before topology correction, eno=-10 (nv=123330, nf=246680, ne=370020, g=6) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 8 iterations marking ambiguous vertices... 2624 ambiguous faces found in tessellation segmenting defects... 15 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 5 into 4 -merging segment 9 into 8 -merging segment 11 into 8 12 defects to be corrected 0 vertices coincident reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.7748 (-4.8874) -vertex loglikelihood: -6.7331 (-3.3666) -normal dot loglikelihood: -3.6552 (-3.6552) -quad curv loglikelihood: -6.2443 (-3.1222) Total Loglikelihood : -26.4074 CORRECTING DEFECT 0 (vertices=41, convex hull=72, v0=465) After retessellation of defect 0 (v0=465), euler #=-12 (121835,365113,243266) : difference with theory (-9) = 3 CORRECTING DEFECT 1 (vertices=39, convex hull=29, v0=3093) After retessellation of defect 1 (v0=3093), euler #=-11 (121841,365141,243289) : difference with theory (-8) = 3 CORRECTING DEFECT 2 (vertices=19, convex hull=40, v0=3143) After retessellation of defect 2 (v0=3143), euler #=-10 (121844,365165,243311) : difference with theory (-7) = 3 CORRECTING DEFECT 3 (vertices=13, convex hull=25, v0=10922) After retessellation of defect 3 (v0=10922), euler #=-9 (121846,365178,243323) : difference with theory (-6) = 3 CORRECTING DEFECT 4 (vertices=457, convex hull=269, v0=43890) After retessellation of defect 4 (v0=43890), euler #=-7 (121874,365406,243525) : difference with theory (-5) = 2 CORRECTING DEFECT 5 (vertices=7, convex hull=30, v0=48742) After retessellation of defect 5 (v0=48742), euler #=-6 (121878,365426,243542) : difference with theory (-4) = 2 CORRECTING DEFECT 6 (vertices=34, convex hull=41, v0=51014) After retessellation of defect 6 (v0=51014), euler #=-5 (121891,365482,243586) : difference with theory (-3) = 2 CORRECTING DEFECT 7 (vertices=143, convex hull=200, v0=83297) After retessellation of defect 7 (v0=83297), euler #=-2 (121907,365624,243715) : difference with theory (-2) = 0 CORRECTING DEFECT 8 (vertices=652, convex hull=124, v0=87906) After retessellation of defect 8 (v0=87906), euler #=-1 (121916,365707,243790) : difference with theory (-1) = 0 CORRECTING DEFECT 9 (vertices=56, convex hull=39, v0=91841) After retessellation of defect 9 (v0=91841), euler #=0 (121926,365752,243826) : difference with theory (0) = 0 CORRECTING DEFECT 10 (vertices=6, convex hull=24, v0=93813) After retessellation of defect 10 (v0=93813), euler #=1 (121927,365763,243837) : difference with theory (1) = 0 CORRECTING DEFECT 11 (vertices=46, convex hull=32, v0=112733) After retessellation of defect 11 (v0=112733), euler #=2 (121935,365799,243866) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.23 (0.13-->12.91) (max @ vno 45983 --> 46031) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.23 (0.13-->12.91) (max @ vno 45983 --> 46031) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 58 mutations (39.7%), 88 crossovers (60.3%), 188 vertices were eliminated building final representation... 1395 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=121935, nf=243866, ne=365799, g=0) writing corrected surface to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 137 intersecting 001: 20 intersecting 002: 2 intersecting terminating search with 0 intersecting topology fixing took 1.4 minutes FSRUNTIME@ mris_fix_topology lh 0.0233 hours 1 threads #VMPC# mris_fix_topology VmPeak 736900 #@# Fix Topology rh Fri Nov 7 03:10:35 CST 2025 mris_fix_topology -threads 1 -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 -threads 1 sub-08YFFYY2_ses-00A rh Setting OMP_NUM_THREADS=1 reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 Setting OMP_NUM_THREADS=1 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 8.0.0 8.0.0 before topology correction, eno=-18 (nv=121662, nf=243360, ne=365040, g=10) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 13 iterations marking ambiguous vertices... 1835 ambiguous faces found in tessellation segmenting defects... 14 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 8 into 7 13 defects to be corrected 0 vertices coincident reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.7840 (-4.8920) -vertex loglikelihood: -6.7724 (-3.3862) -normal dot loglikelihood: -3.6230 (-3.6230) -quad curv loglikelihood: -6.4172 (-3.2086) Total Loglikelihood : -26.5966 CORRECTING DEFECT 0 (vertices=92, convex hull=120, v0=339) After retessellation of defect 0 (v0=339), euler #=-11 (120576,361316,240729) : difference with theory (-10) = 1 CORRECTING DEFECT 1 (vertices=408, convex hull=243, v0=1613) After retessellation of defect 1 (v0=1613), euler #=-10 (120632,361596,240954) : difference with theory (-9) = 1 CORRECTING DEFECT 2 (vertices=58, convex hull=99, v0=3174) After retessellation of defect 2 (v0=3174), euler #=-9 (120652,361701,241040) : difference with theory (-8) = 1 CORRECTING DEFECT 3 (vertices=5, convex hull=31, v0=43344) After retessellation of defect 3 (v0=43344), euler #=-8 (120654,361714,241052) : difference with theory (-7) = 1 CORRECTING DEFECT 4 (vertices=302, convex hull=228, v0=44537) After retessellation of defect 4 (v0=44537), euler #=-7 (120754,362129,241368) : difference with theory (-6) = 1 CORRECTING DEFECT 5 (vertices=5, convex hull=26, v0=51091) After retessellation of defect 5 (v0=51091), euler #=-6 (120756,362143,241381) : difference with theory (-5) = 1 CORRECTING DEFECT 6 (vertices=6, convex hull=22, v0=52139) After retessellation of defect 6 (v0=52139), euler #=-5 (120758,362156,241393) : difference with theory (-4) = 1 CORRECTING DEFECT 7 (vertices=94, convex hull=104, v0=80192) After retessellation of defect 7 (v0=80192), euler #=-3 (120780,362260,241477) : difference with theory (-3) = 0 CORRECTING DEFECT 8 (vertices=18, convex hull=51, v0=84744) After retessellation of defect 8 (v0=84744), euler #=-2 (120791,362312,241519) : difference with theory (-2) = 0 CORRECTING DEFECT 9 (vertices=17, convex hull=16, v0=88328) After retessellation of defect 9 (v0=88328), euler #=-1 (120794,362325,241530) : difference with theory (-1) = 0 CORRECTING DEFECT 10 (vertices=11, convex hull=35, v0=94082) After retessellation of defect 10 (v0=94082), euler #=0 (120796,362344,241548) : difference with theory (0) = 0 CORRECTING DEFECT 11 (vertices=35, convex hull=36, v0=100265) After retessellation of defect 11 (v0=100265), euler #=1 (120806,362387,241582) : difference with theory (1) = 0 CORRECTING DEFECT 12 (vertices=62, convex hull=57, v0=106557) After retessellation of defect 12 (v0=106557), euler #=2 (120823,362463,241642) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.22 (0.07-->12.41) (max @ vno 1581 --> 4842) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.22 (0.07-->12.41) (max @ vno 1581 --> 4842) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 48 mutations (35.0%), 89 crossovers (65.0%), 65 vertices were eliminated building final representation... 839 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=120823, nf=241642, ne=362463, g=0) writing corrected surface to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 164 intersecting 001: 28 intersecting 002: 16 intersecting terminating search with 0 intersecting topology fixing took 1.1 minutes FSRUNTIME@ mris_fix_topology rh 0.0188 hours 1 threads #VMPC# mris_fix_topology VmPeak 735028 mris_euler_number ../surf/lh.orig.premesh euler # = v-e+f = 2g-2: 121935 - 365799 + 243866 = 2 --> 0 holes F =2V-4: 243866 = 243870-4 (0) 2E=3F: 731598 = 731598 (0) total defect index = 0 mris_euler_number ../surf/rh.orig.premesh euler # = v-e+f = 2g-2: 120823 - 362463 + 241642 = 2 --> 0 holes F =2V-4: 241642 = 241646-4 (0) 2E=3F: 724926 = 724926 (0) total defect index = 0 Fri Nov 7 03:11:44 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/defect2seg --s sub-08YFFYY2_ses-00A --cortex freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a defect2seg 8.0.0 Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1194545 mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.orig.nofix /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.nofix.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 15 non-cortical segments detected only using segment with 7287 vertices erasing segment 1 (vno[0] = 75214) erasing segment 2 (vno[0] = 81020) erasing segment 3 (vno[0] = 86098) erasing segment 4 (vno[0] = 86122) erasing segment 5 (vno[0] = 86992) erasing segment 6 (vno[0] = 87933) erasing segment 7 (vno[0] = 87953) erasing segment 8 (vno[0] = 88816) erasing segment 9 (vno[0] = 89753) erasing segment 10 (vno[0] = 89812) erasing segment 11 (vno[0] = 90718) erasing segment 12 (vno[0] = 95235) erasing segment 13 (vno[0] = 97825) erasing segment 14 (vno[0] = 98428) mri_label2vol --defects /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.orig.nofix /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.defect_labels /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz 1000 0 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/surface.defects.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.nofix.cortex.label mri_label2vol supposed to be reproducible but seed not set Contraining to label /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.nofix.cortex.label Changing input type 0 to MRI_INT Converting defects to volume: offset=1000, merge=0 Writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/surface.defects.mgz mris_defects_pointset -s /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.orig.nofix -d /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.defect_labels -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.defects.pointset --label /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.nofix.cortex.label Reading in surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.orig.nofix Reading in defect segmentation /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.defect_labels Reading in label /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.nofix.cortex.label #VMPC# mris_defects_pointset 163920 mris_defects_pointset done mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.orig.nofix /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.nofix.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 9 non-cortical segments detected only using segment with 7516 vertices erasing segment 1 (vno[0] = 54469) erasing segment 2 (vno[0] = 70506) erasing segment 3 (vno[0] = 75334) erasing segment 4 (vno[0] = 88328) erasing segment 5 (vno[0] = 89232) erasing segment 6 (vno[0] = 89286) erasing segment 7 (vno[0] = 89500) erasing segment 8 (vno[0] = 91237) mri_label2vol --defects /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.orig.nofix /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.defect_labels /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/surface.defects.mgz 2000 1 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/surface.defects.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.nofix.cortex.label mri_label2vol supposed to be reproducible but seed not set Contraining to label /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.nofix.cortex.label Converting defects to volume: offset=2000, merge=1 Writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/surface.defects.mgz mris_defects_pointset -s /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.orig.nofix -d /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.defect_labels -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.defects.pointset --label /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.nofix.cortex.label Reading in surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.orig.nofix Reading in defect segmentation /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.defect_labels Reading in label /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.nofix.cortex.label #VMPC# mris_defects_pointset 161880 mris_defects_pointset done Started at Fri Nov 7 03:11:44 CST 2025 Ended at Fri Nov 7 03:12:01 CST 2025 Defect2seg-Run-Time-Sec 17 Defect2seg-Run-Time-Min 0.34 Defect2seg-Run-Time-Hours 0.00 tkmeditfv sub-08YFFYY2_ses-00A brain.finalsurfs.mgz -defect defect2seg Done mris_remesh --remesh --iters 3 --input /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.orig.premesh --output /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.orig iters = 3 standard remeshing without target adjusted l: 0.709962 remeshing to edge length 0.709962 with 3 iterations avg qual before : 0.893424 after: 0.971072 Removing intersections Remeshed surface quality stats nv0 = 121935 nv = 127731 1.04753 Area 255458 0.30155 0.03362 0.083578 0.4917 Corner 766374 60.00000 8.81478 19.521711 140.7304 Edge 383187 0.84248 0.08239 0.442357 1.2311 Hinge 383187 9.52521 10.16823 0.000006 122.0114 mris_remesh done mris_remesh --remesh --iters 3 --input /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.orig.premesh --output /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.orig iters = 3 standard remeshing without target adjusted l: 0.710834 remeshing to edge length 0.710834 with 3 iterations avg qual before : 0.893572 after: 0.971278 Removing intersections Remeshed surface quality stats nv0 = 120823 nv = 126591 1.04774 Area 253178 0.30239 0.03353 0.091964 0.4722 Corner 759534 60.00000 8.78350 16.472785 144.5549 Edge 379767 0.84361 0.08221 0.477561 1.2500 Hinge 379767 9.55176 10.35629 0.000001 139.3869 mris_remesh done /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.00 hours Found 0 intersections writing corrected surface to ../surf/lh.orig rm -f ../surf/lh.inflated /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours Found 0 intersections writing corrected surface to ../surf/rh.orig rm -f ../surf/rh.inflated #-------------------------------------------- #@# AutoDetGWStats lh Fri Nov 7 03:12:44 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh 8.0.0 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh border white: 218248 voxels (1.30%) border gray 251678 voxels (1.50%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/lh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=37315, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (100.0): 99.2 +- 9.4 [70.0 --> 110.0] CCS GM (71.0) : 71.3 +- 9.9 [30.0 --> 110.0] white_mean = 99.1928 +/- 9.35377, gray_mean = 71.3047 +/- 9.8944 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=172 nbins=173 intensity peaks found at WM=105+-6.1, GM=68+-7.0 white_mode = 105, gray_mode = 68 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 58.1 (was 70.000000) setting MAX_BORDER_WHITE to 114.4 (was 105.000000) setting MIN_BORDER_WHITE to 68.0 (was 85.000000) setting MAX_CSF to 48.2 (was 40.000000) setting MAX_GRAY to 95.6 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 58.1 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 38.3 (was 40.000000) When placing the white surface white_border_hi = 114.354; white_border_low = 68; white_outside_low = 58.1056; white_inside_hi = 120; white_outside_hi = 114.354; When placing the pial surface pial_border_hi = 58.1056; pial_border_low = 38.3168; pial_outside_low = 10; pial_inside_hi = 95.6462; pial_outside_hi = 53.1584; #VMPC# mris_autodet_gwstats VmPeak 235212 mris_autodet_gwstats done #-------------------------------------------- #@# AutoDetGWStats rh Fri Nov 7 03:12:46 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh 8.0.0 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh border white: 218248 voxels (1.30%) border gray 251678 voxels (1.50%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/rh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=37315, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (100.0): 99.2 +- 9.4 [70.0 --> 110.0] CCS GM (71.0) : 71.3 +- 9.9 [30.0 --> 110.0] white_mean = 99.1928 +/- 9.35377, gray_mean = 71.3047 +/- 9.8944 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=172 nbins=173 intensity peaks found at WM=105+-7.0, GM=68+-6.1 white_mode = 105, gray_mode = 68 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 58.1 (was 70.000000) setting MAX_BORDER_WHITE to 114.4 (was 105.000000) setting MIN_BORDER_WHITE to 68.0 (was 85.000000) setting MAX_CSF to 48.2 (was 40.000000) setting MAX_GRAY to 95.6 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 58.1 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 38.3 (was 40.000000) When placing the white surface white_border_hi = 114.354; white_border_low = 68; white_outside_low = 58.1056; white_inside_hi = 120; white_outside_hi = 114.354; When placing the pial surface pial_border_hi = 58.1056; pial_border_low = 38.3168; pial_outside_low = 10; pial_inside_hi = 95.6462; pial_outside_hi = 53.1584; #VMPC# mris_autodet_gwstats VmPeak 233628 mris_autodet_gwstats done #-------------------------------------------- #@# WhitePreAparc lh Fri Nov 7 03:12:48 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz Reading in input surface ../surf/lh.orig Smoothing surface before ripping with 5 iterations Area 255458 0.26648 0.06301 0.011307 0.6590 Corner 766374 60.00000 9.61343 15.715418 134.0053 Edge 383187 0.78847 0.11432 0.125865 1.2921 Hinge 383187 6.36043 6.44007 0.000006 131.8040 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1072 MRIclipBrightWM(): nthresh=37315, wmmin=5, clip=110 MRIfindBrightNonWM(): 50 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1072 Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 #FML# MRISripMidline(): nmarked=6178, nmarked2=0, nripped=6178 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 47 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 63866: xyz = (-42.4965,-10.9142,67.2601) oxyz = (-42.4965,-10.9142,67.2601) wxzy = (-42.4965,-10.9142,67.2601) pxyz = (0,0,0) CBVO Creating mask 127731 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6225 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6254, nmarked2=0, nripped=6254 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 0 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 778856 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=2 had to be increased for 169 vertices, nripped=6254 mean border=79.8, 56 (56) missing vertices, mean dist 0.3 [0.5 (%37.9)->0.7 (%62.1))] %77 local maxima, %18 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1280 min Finding expansion regions mean absolute distance = 0.64 +- 0.74 4584 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-03-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=3318421.2, rms=11.442 001: dt: 0.5000, sse=1767133.8, rms=8.198 (28.349%) 002: dt: 0.5000, sse=1122580.5, rms=6.375 (22.238%) 003: dt: 0.5000, sse=820611.4, rms=5.295 (16.945%) 004: dt: 0.5000, sse=676224.9, rms=4.678 (11.646%) 005: dt: 0.5000, sse=589135.8, rms=4.309 (7.892%) 006: dt: 0.5000, sse=554830.3, rms=4.133 (4.094%) 007: dt: 0.5000, sse=530115.8, rms=4.004 (3.101%) rms = 3.9544/4.0044, sse=522845.2/530115.8, time step reduction 1 of 3 to 0.250 0 0 1 008: dt: 0.5000, sse=522845.2, rms=3.954 (1.247%) 009: dt: 0.2500, sse=307950.8, rms=2.576 (34.870%) 010: dt: 0.2500, sse=262402.3, rms=2.185 (15.152%) 011: dt: 0.2500, sse=250752.7, rms=2.062 (5.651%) rms = 1.9782/2.0618, sse=252983.5/250752.7, time step reduction 2 of 3 to 0.125 0 1 0 012: dt: 0.2500, sse=252983.5, rms=1.978 (4.055%) 013: dt: 0.1250, sse=235742.2, rms=1.864 (5.796%) rms = 1.8356/1.8635, sse=230160.8/235742.2, time step reduction 3 of 3 to 0.062 0 0 1 014: dt: 0.1250, sse=230160.8, rms=1.836 (1.497%) maximum number of reductions reached, breaking from loop positioning took 0.8 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6254 removing 1 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6334, nmarked2=0, nripped=6334 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 11 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 1606172 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=1 had to be increased for 79 vertices, nripped=6345 mean border=84.1, 37 (4) missing vertices, mean dist -0.2 [0.3 (%81.1)->0.3 (%18.9))] %87 local maxima, % 8 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0854 min Finding expansion regions mean absolute distance = 0.31 +- 0.42 3449 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-03-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=963158.4, rms=5.632 015: dt: 0.5000, sse=523516.1, rms=3.682 (34.621%) rms = 3.9627/3.6820, sse=577512.9/523516.1, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 016: dt: 0.2500, sse=374279.9, rms=2.725 (25.978%) 017: dt: 0.2500, sse=310138.5, rms=2.144 (21.339%) 018: dt: 0.2500, sse=285083.1, rms=1.870 (12.754%) 019: dt: 0.2500, sse=279875.1, rms=1.748 (6.553%) 020: dt: 0.2500, sse=262660.2, rms=1.673 (4.279%) rms = 1.6312/1.6731, sse=259147.9/262660.2, time step reduction 2 of 3 to 0.125 0 0 1 021: dt: 0.2500, sse=259148.0, rms=1.631 (2.501%) 022: dt: 0.1250, sse=252914.4, rms=1.541 (5.545%) rms = 1.5266/1.5408, sse=253482.2/252914.4, time step reduction 3 of 3 to 0.062 0 1 1 023: dt: 0.1250, sse=253482.2, rms=1.527 (0.924%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6345 removing 1 vertices from ripped group in thread:0 removing 1 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6387, nmarked2=0, nripped=6387 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 3 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 1752128 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 160 vertices, nripped=6390 mean border=86.1, 50 (1) missing vertices, mean dist -0.1 [0.2 (%70.7)->0.2 (%29.3))] %91 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0459 min Finding expansion regions mean absolute distance = 0.19 +- 0.29 2454 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-03-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=410282.7, rms=2.995 rms = 3.2827/2.9948, sse=460927.5/410282.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 024: dt: 0.2500, sse=300067.7, rms=2.091 (30.174%) 025: dt: 0.2500, sse=255309.3, rms=1.570 (24.933%) 026: dt: 0.2500, sse=249124.3, rms=1.498 (4.555%) rms = 1.4822/1.4983, sse=248442.6/249124.3, time step reduction 2 of 3 to 0.125 0 0 1 027: dt: 0.2500, sse=248442.6, rms=1.482 (1.074%) 028: dt: 0.1250, sse=242874.2, rms=1.402 (5.426%) rms = 1.3818/1.4017, sse=245874.6/242874.2, time step reduction 3 of 3 to 0.062 0 1 1 029: dt: 0.1250, sse=245874.6, rms=1.382 (1.425%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6390 removing 1 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 1 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6408, nmarked2=0, nripped=6408 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 5 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 1868284 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 196 vertices, nripped=6413 mean border=86.6, 92 (0) missing vertices, mean dist -0.0 [0.2 (%54.6)->0.2 (%45.4))] %92 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0290 min Finding expansion regions mean absolute distance = 0.17 +- 0.25 2325 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-03-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=258473.3, rms=1.573 rms = 1.9534/1.5735, sse=300161.1/258473.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 030: dt: 0.2500, sse=235459.9, rms=1.225 (22.139%) 031: dt: 0.2500, sse=233143.2, rms=1.132 (7.582%) rms = 1.1491/1.1322, sse=232013.6/233143.2, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 1.1269/1.1322, sse=231227.4/233143.2, time step reduction 3 of 3 to 0.062 0 0 1 032: dt: 0.1250, sse=231227.4, rms=1.127 (0.469%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.20 minutes Writing output to ../surf/lh.white.preaparc #VMPC# mris_place_surfaces VmPeak 1937928 mris_place_surface done #-------------------------------------------- #@# WhitePreAparc rh Fri Nov 7 03:15:05 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz Reading in input surface ../surf/rh.orig Smoothing surface before ripping with 5 iterations Area 253178 0.26698 0.06385 0.003044 0.5692 Corner 759534 60.00000 9.75094 15.095359 141.9773 Edge 379767 0.78922 0.11569 0.081615 1.3343 Hinge 379767 6.34078 6.58733 0.000014 131.3496 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1072 MRIclipBrightWM(): nthresh=37315, wmmin=5, clip=110 MRIfindBrightNonWM(): 50 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1072 Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 #FML# MRISripMidline(): nmarked=6286, nmarked2=0, nripped=6286 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 65 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 63296: xyz = (11.1011,-12.7987,6.41627) oxyz = (11.1011,-12.7987,6.41627) wxzy = (11.1011,-12.7987,6.41627) pxyz = (0,0,0) CBVO Creating mask 126591 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6351 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6368, nmarked2=0, nripped=6368 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 0 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 756152 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=2 had to be increased for 195 vertices, nripped=6368 mean border=79.7, 61 (61) missing vertices, mean dist 0.3 [0.5 (%38.5)->0.7 (%61.5))] %75 local maxima, %20 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1243 min Finding expansion regions mean absolute distance = 0.64 +- 0.75 4350 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-03-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=3235436.8, rms=11.350 001: dt: 0.5000, sse=1718246.1, rms=8.120 (28.463%) 002: dt: 0.5000, sse=1104869.4, rms=6.360 (21.673%) 003: dt: 0.5000, sse=818936.5, rms=5.338 (16.067%) 004: dt: 0.5000, sse=672432.1, rms=4.727 (11.442%) 005: dt: 0.5000, sse=596973.8, rms=4.348 (8.019%) 006: dt: 0.5000, sse=555772.4, rms=4.145 (4.669%) 007: dt: 0.5000, sse=528395.3, rms=4.015 (3.132%) 008: dt: 0.5000, sse=515572.3, rms=3.945 (1.748%) rms = 3.8955/3.9452, sse=509401.9/515572.3, time step reduction 1 of 3 to 0.250 0 0 1 009: dt: 0.5000, sse=509401.9, rms=3.896 (1.258%) 010: dt: 0.2500, sse=298610.8, rms=2.477 (36.410%) 011: dt: 0.2500, sse=250903.8, rms=2.076 (16.206%) 012: dt: 0.2500, sse=241391.7, rms=1.965 (5.356%) 013: dt: 0.2500, sse=231939.6, rms=1.879 (4.334%) rms = 1.8346/1.8794, sse=228005.4/231939.6, time step reduction 2 of 3 to 0.125 0 0 1 014: dt: 0.2500, sse=228005.4, rms=1.835 (2.385%) 015: dt: 0.1250, sse=217467.3, rms=1.710 (6.808%) rms = 1.6886/1.7097, sse=216200.1/217467.3, time step reduction 3 of 3 to 0.062 0 0 1 016: dt: 0.1250, sse=216200.1, rms=1.689 (1.234%) maximum number of reductions reached, breaking from loop positioning took 0.9 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6368 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6469, nmarked2=0, nripped=6469 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 8 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 1637976 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=1 had to be increased for 124 vertices, nripped=6477 mean border=83.6, 55 (3) missing vertices, mean dist -0.2 [0.3 (%79.7)->0.3 (%20.3))] %85 local maxima, %10 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0829 min Finding expansion regions mean absolute distance = 0.30 +- 0.43 2502 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-03-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=857781.9, rms=5.260 017: dt: 0.5000, sse=498078.2, rms=3.520 (33.083%) rms = 3.8514/3.5197, sse=551632.8/498078.2, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 018: dt: 0.2500, sse=347355.6, rms=2.480 (29.549%) 019: dt: 0.2500, sse=292793.7, rms=1.920 (22.564%) 020: dt: 0.2500, sse=272191.5, rms=1.668 (13.144%) 021: dt: 0.2500, sse=263012.2, rms=1.582 (5.131%) 022: dt: 0.2500, sse=250495.5, rms=1.530 (3.322%) rms = 1.4992/1.5297, sse=247779.3/250495.5, time step reduction 2 of 3 to 0.125 0 0 1 023: dt: 0.2500, sse=247779.3, rms=1.499 (1.991%) 024: dt: 0.1250, sse=240870.7, rms=1.406 (6.214%) rms = 1.3917/1.4060, sse=239429.7/240870.7, time step reduction 3 of 3 to 0.062 0 0 1 025: dt: 0.1250, sse=239429.7, rms=1.392 (1.021%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6477 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6517, nmarked2=0, nripped=6517 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 11 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 1823992 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 160 vertices, nripped=6528 mean border=85.7, 68 (2) missing vertices, mean dist -0.1 [0.2 (%70.0)->0.2 (%30.0))] %90 local maxima, % 5 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0446 min Finding expansion regions mean absolute distance = 0.20 +- 0.30 2840 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-03-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=403168.9, rms=2.981 rms = 3.2571/2.9810, sse=458424.8/403168.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 026: dt: 0.2500, sse=293840.6, rms=2.073 (30.460%) 027: dt: 0.2500, sse=247132.6, rms=1.490 (28.130%) 028: dt: 0.2500, sse=241132.1, rms=1.398 (6.154%) rms = 1.3754/1.3982, sse=252685.2/241132.1, time step reduction 2 of 3 to 0.125 0 1 1 029: dt: 0.2500, sse=252685.2, rms=1.375 (1.628%) 030: dt: 0.1250, sse=232279.7, rms=1.263 (8.145%) rms = 1.2501/1.2634, sse=231433.5/232279.7, time step reduction 3 of 3 to 0.062 0 0 1 031: dt: 0.1250, sse=231433.5, rms=1.250 (1.054%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6528 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6579, nmarked2=0, nripped=6579 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 5 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 1901328 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 208 vertices, nripped=6584 mean border=86.2, 124 (1) missing vertices, mean dist -0.0 [0.2 (%54.6)->0.2 (%45.4))] %91 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0280 min Finding expansion regions mean absolute distance = 0.17 +- 0.26 2676 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-03-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=246736.0, rms=1.504 rms = 1.9358/1.5038, sse=294828.8/246736.0, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 032: dt: 0.2500, sse=223653.4, rms=1.110 (26.154%) rms = 0.9954/1.1105, sse=224301.0/223653.4, time step reduction 2 of 3 to 0.125 0 1 0 033: dt: 0.2500, sse=224301.0, rms=0.995 (10.362%) rms = 0.9831/0.9954, sse=218770.0/224301.0, time step reduction 3 of 3 to 0.062 0 0 1 034: dt: 0.1250, sse=218770.0, rms=0.983 (1.242%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.29 minutes Writing output to ../surf/rh.white.preaparc #VMPC# mris_place_surfaces VmPeak 1938508 mris_place_surface done #-------------------------------------------- #@# CortexLabel lh Fri Nov 7 03:17:27 CST 2025 Fri Nov 7 03:17:27 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex --s sub-08YFFYY2_ses-00A --lh --fix-ga -rwxr-x--- 1 root kdamme 14140 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1200290 mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white.preaparc /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.cortex-no-ga.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 9 non-cortical segments detected only using segment with 8009 vertices erasing segment 0 (vno[0] = 12215) erasing segment 1 (vno[0] = 17407) erasing segment 3 (vno[0] = 64267) erasing segment 4 (vno[0] = 65330) erasing segment 5 (vno[0] = 76023) erasing segment 6 (vno[0] = 76562) erasing segment 7 (vno[0] = 76949) erasing segment 8 (vno[0] = 78503) mri_binarize --match 3201 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/gyrus-ambiens.lh.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri cmdline mri_binarize --match 3201 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/gyrus-ambiens.lh.mgz sysname Linux hostname c-03-06 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/entowm.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/gyrus-ambiens.lh.mgz Binarizing based on matching values nMatch 1 0 3201 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 196 values in range Counting number of voxels in first frame Found 196 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/gyrus-ambiens.lh.mgz Count: 196 196.000000 16777216 0.001168 mri_binarize done mri_vol2surf --regheader sub-08YFFYY2_ses-00A --hemi lh --surf white.preaparc --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/gyrus-ambiens.lh.mgz --projdist-max -1 0 .1 --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.mgz INFO: Delta=0.1 > Max=0, may be ok, maybe not srcvol = /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/gyrus-ambiens.lh.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white.preaparc hemi = lh ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 1 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white.preaparc Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 0 0.1 1 -1 -1 0 using old 2 -0.9 -1 0 using old 3 -0.8 -1 0 using old 4 -0.7 -1 0 using old 5 -0.6 -1 0 using old 6 -0.5 -1 0 using old 7 -0.4 -1 0 using old 8 -0.3 -1 0 using old 9 -0.2 -1 0 using old 10 -0.0999999 -1 0 using old Done mapping volume to surface Number of source voxels hit = 85749 Writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.mgz Dim: 127731 1 1 mri_vol2surf done mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white.preaparc /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.white.preaparc.nxyz.mgz mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white.preaparc /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.white.preaparc.nxyz.mgz Reading in /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white.preaparc Converting surface XYZ coordinates from tkr to scanner space. Outputting normals /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.white.preaparc.nxyz.mgz mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nx.mask.mgz --min +0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri cmdline mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nx.mask.mgz --min +0.01 sysname Linux hostname c-03-06 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.white.preaparc.nxyz.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nx.mask.mgz Binarizing based on threshold min 0.01 max +infinity binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.mgz fstart = 0, fend = 0, nframes = 1 Found 282 values in range Counting number of voxels in first frame Found 282 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nx.mask.mgz Count: 282 282.000000 127731 0.220776 mri_binarize done mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nz.mask.mgz --max -0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri cmdline mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nz.mask.mgz --max -0.01 sysname Linux hostname c-03-06 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.white.preaparc.nxyz.mgz frame 2 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nz.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.mgz fstart = 2, fend = 2, nframes = 1 Found 237 values in range Counting number of voxels in first frame Found 237 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nz.mask.mgz Count: 237 237.000000 127731 0.185546 mri_binarize done fscalc /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.lat.mask.mgz Fri Nov 7 03:17:37 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fscalc /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.lat.mask.mgz freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/tmp.9yQhJF/tmp.mgh mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/tmp.9yQhJF/tmp.mgh reading from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nx.mask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/tmp.9yQhJF/tmp.mgh... ---------------------- mris_calc -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/tmp.9yQhJF/tmp.mgh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/tmp.9yQhJF/tmp.mgh and /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.nz.mask.mgz Packing Done packing Packing Done packing Unpacking Saving result to '/scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/tmp.9yQhJF/tmp.mgh' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 13068 ---------------------- mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/tmp.9yQhJF/tmp.mgh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.lat.mask.mgz mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/tmp.9yQhJF/tmp.mgh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.lat.mask.mgz reading from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/tmp.9yQhJF/tmp.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.lat.mask.mgz... mri_cor2label --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.lat.mask.mgz --l /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.med.label --surf-path /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white.preaparc --id 1 --thresh 0.5 Loading mri /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.lat.mask.mgz 8.0.0 ------- Vox2RAS of input volume ----------- -1.00000 0.00000 0.00000 63865.50000; 0.00000 0.00000 1.00000 -0.50000; 0.00000 -1.00000 0.00000 0.50000; 0.00000 0.00000 0.00000 1.00000; Scanning the volume mri_cor2label completed SUCCESSFULLY Loading surf /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white.preaparc Found 206 label voxels Writing label file /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.med.label Centroid: -18.74 -4.69 2.35 mri_mergelabels -i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.cortex-no-ga.label -i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1200290/lh.gyrus-ambiens.med.label -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Done To view results, run fsvglrun freeview -f /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white.preaparc:label=/scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Started at Fri Nov 7 03:17:27 CST 2025 Ended at Fri Nov 7 03:17:38 CST 2025 Label-Cortex-Run-Time-Sec 11 Label-Cortex-Run-Time-Min 0.18 Label-Cortex-Run-Time-Hours 0.00 label-cortex Done #-------------------------------------------- #@# CortexLabel+HipAmyg lh Fri Nov 7 03:17:38 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_label2label --label-cortex ../surf/lh.white.preaparc aseg.presurf.mgz 1 ../label/lh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 11 non-cortical segments detected only using segment with 5636 vertices erasing segment 0 (vno[0] = 12215) erasing segment 1 (vno[0] = 17407) erasing segment 3 (vno[0] = 45402) erasing segment 4 (vno[0] = 64267) erasing segment 5 (vno[0] = 70478) erasing segment 6 (vno[0] = 76023) erasing segment 7 (vno[0] = 76562) erasing segment 8 (vno[0] = 76949) erasing segment 9 (vno[0] = 117447) erasing segment 10 (vno[0] = 120706) #-------------------------------------------- #@# CortexLabel rh Fri Nov 7 03:17:46 CST 2025 Fri Nov 7 03:17:46 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex --s sub-08YFFYY2_ses-00A --rh --fix-ga -rwxr-x--- 1 root kdamme 14140 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1201598 mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white.preaparc /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.cortex-no-ga.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 3 non-cortical segments detected only using segment with 8225 vertices erasing segment 1 (vno[0] = 73967) erasing segment 2 (vno[0] = 75991) mri_binarize --match 4201 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/gyrus-ambiens.rh.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri cmdline mri_binarize --match 4201 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/gyrus-ambiens.rh.mgz sysname Linux hostname c-03-06 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/entowm.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/gyrus-ambiens.rh.mgz Binarizing based on matching values nMatch 1 0 4201 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 231 values in range Counting number of voxels in first frame Found 231 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/gyrus-ambiens.rh.mgz Count: 231 231.000000 16777216 0.001377 mri_binarize done mri_vol2surf --regheader sub-08YFFYY2_ses-00A --hemi rh --surf white.preaparc --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/gyrus-ambiens.rh.mgz --projdist-max -1 0 .1 --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.mgz INFO: Delta=0.1 > Max=0, may be ok, maybe not srcvol = /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/gyrus-ambiens.rh.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white.preaparc hemi = rh ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 1 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white.preaparc Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 0 0.1 1 -1 -1 0 using old 2 -0.9 -1 0 using old 3 -0.8 -1 0 using old 4 -0.7 -1 0 using old 5 -0.6 -1 0 using old 6 -0.5 -1 0 using old 7 -0.4 -1 0 using old 8 -0.3 -1 0 using old 9 -0.2 -1 0 using old 10 -0.0999999 -1 0 using old Done mapping volume to surface Number of source voxels hit = 85331 Writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.mgz Dim: 126591 1 1 mri_vol2surf done mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white.preaparc /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.white.preaparc.nxyz.mgz mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white.preaparc /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.white.preaparc.nxyz.mgz Reading in /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white.preaparc Converting surface XYZ coordinates from tkr to scanner space. Outputting normals /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.white.preaparc.nxyz.mgz mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nx.mask.mgz --max -0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri cmdline mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nx.mask.mgz --max -0.01 sysname Linux hostname c-03-06 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.white.preaparc.nxyz.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nx.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.mgz fstart = 0, fend = 0, nframes = 1 Found 263 values in range Counting number of voxels in first frame Found 263 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nx.mask.mgz Count: 263 263.000000 126591 0.207756 mri_binarize done mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nz.mask.mgz --max -0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri cmdline mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nz.mask.mgz --max -0.01 sysname Linux hostname c-03-06 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.white.preaparc.nxyz.mgz frame 2 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nz.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.mgz fstart = 2, fend = 2, nframes = 1 Found 227 values in range Counting number of voxels in first frame Found 227 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nz.mask.mgz Count: 227 227.000000 126591 0.179318 mri_binarize done fscalc /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.lat.mask.mgz Fri Nov 7 03:17:56 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fscalc /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.lat.mask.mgz freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/tmp.jVOQNA/tmp.mgh mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/tmp.jVOQNA/tmp.mgh reading from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nx.mask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/tmp.jVOQNA/tmp.mgh... ---------------------- mris_calc -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/tmp.jVOQNA/tmp.mgh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/tmp.jVOQNA/tmp.mgh and /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.nz.mask.mgz Packing Done packing Packing Done packing Unpacking Saving result to '/scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/tmp.jVOQNA/tmp.mgh' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 13048 ---------------------- mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/tmp.jVOQNA/tmp.mgh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.lat.mask.mgz mri_convert /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/tmp.jVOQNA/tmp.mgh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.lat.mask.mgz reading from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/tmp.jVOQNA/tmp.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.lat.mask.mgz... mri_cor2label --i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.lat.mask.mgz --l /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.med.label --surf-path /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white.preaparc --id 1 --thresh 0.5 Loading mri /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.lat.mask.mgz 8.0.0 ------- Vox2RAS of input volume ----------- -1.00000 0.00000 0.00000 63295.50000; 0.00000 0.00000 1.00000 -0.50000; 0.00000 -1.00000 0.00000 0.50000; 0.00000 0.00000 0.00000 1.00000; Scanning the volume mri_cor2label completed SUCCESSFULLY Loading surf /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white.preaparc Found 170 label voxels Writing label file /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.med.label Centroid: 17.38 -5.40 1.43 mri_mergelabels -i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.cortex-no-ga.label -i /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/tmpdir.label-cortex.1201598/rh.gyrus-ambiens.med.label -o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Done To view results, run fsvglrun freeview -f /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white.preaparc:label=/scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Started at Fri Nov 7 03:17:46 CST 2025 Ended at Fri Nov 7 03:17:56 CST 2025 Label-Cortex-Run-Time-Sec 10 Label-Cortex-Run-Time-Min 0.17 Label-Cortex-Run-Time-Hours 0.00 label-cortex Done #-------------------------------------------- #@# CortexLabel+HipAmyg rh Fri Nov 7 03:17:57 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_label2label --label-cortex ../surf/rh.white.preaparc aseg.presurf.mgz 1 ../label/rh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 5 non-cortical segments detected only using segment with 5760 vertices erasing segment 1 (vno[0] = 38642) erasing segment 2 (vno[0] = 40827) erasing segment 3 (vno[0] = 40873) erasing segment 4 (vno[0] = 75991) #-------------------------------------------- #@# Smooth2 lh Fri Nov 7 03:18:04 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Smooth2 rh Fri Nov 7 03:18:06 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 lh Fri Nov 7 03:18:08 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated Reading ../surf/lh.smoothwm avg radius = 44.9 mm, total surface area = 78443 mm^2 step 000: RMS=0.171 (target=0.015) step 005: RMS=0.113 (target=0.015) step 010: RMS=0.086 (target=0.015) step 015: RMS=0.072 (target=0.015) step 020: RMS=0.060 (target=0.015) step 025: RMS=0.049 (target=0.015) step 030: RMS=0.041 (target=0.015) step 035: RMS=0.034 (target=0.015) step 040: RMS=0.029 (target=0.015) step 045: RMS=0.026 (target=0.015) step 050: RMS=0.023 (target=0.015) step 055: RMS=0.021 (target=0.015) step 060: RMS=0.019 (target=0.015) writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc inflation complete. inflation took 0.2 minutes mris_inflate utimesec 12.348541 mris_inflate stimesec 0.359691 mris_inflate ru_maxrss 197220 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 209642 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 9992 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 155 mris_inflate ru_nivcsw 20 #-------------------------------------------- #@# Inflation2 rh Fri Nov 7 03:18:21 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated Reading ../surf/rh.smoothwm avg radius = 44.7 mm, total surface area = 78613 mm^2 step 000: RMS=0.171 (target=0.015) step 005: RMS=0.114 (target=0.015) step 010: RMS=0.087 (target=0.015) step 015: RMS=0.073 (target=0.015) step 020: RMS=0.060 (target=0.015) step 025: RMS=0.050 (target=0.015) step 030: RMS=0.041 (target=0.015) step 035: RMS=0.035 (target=0.015) step 040: RMS=0.029 (target=0.015) step 045: RMS=0.026 (target=0.015) step 050: RMS=0.023 (target=0.015) step 055: RMS=0.021 (target=0.015) step 060: RMS=0.019 (target=0.015) writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc inflation complete. inflation took 0.2 minutes mris_inflate utimesec 12.367474 mris_inflate stimesec 0.761489 mris_inflate ru_maxrss 196516 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 433095 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 9904 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 155 mris_inflate ru_nivcsw 189 #-------------------------------------------- #@# Curv .H and .K lh Fri Nov 7 03:18:34 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf mris_curvature -w -seed 1234 lh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 14.791*4pi (185.874) --> -14 handles ICI = 142.0, FI = 1458.7, variation=22876.052 writing Gaussian curvature to ./lh.white.preaparc.K... done. writing mean curvature to ./lh.white.preaparc.H... lh.white.preaparc.H mris_curvature done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 144 vertices thresholded to be in k1 ~ [-0.62 0.36], k2 ~ [-0.19 0.18] total integrated curvature = 0.697*4pi (8.754) --> 0 handles ICI = 1.5, FI = 8.9, variation=152.722 118 vertices thresholded to be in [-0.04 0.01] writing Gaussian curvature to ./lh.inflated.K... thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 90 vertices thresholded to be in [-0.15 0.18] done. writing mean curvature to ./lh.inflated.H... curvature mean = -0.017, std = 0.022 lh.inflated.H mris_curvature done. #-------------------------------------------- #@# Curv .H and .K rh Fri Nov 7 03:19:06 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf mris_curvature -w -seed 1234 rh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 8.714*4pi (109.502) --> -8 handles ICI = 138.8, FI = 1466.5, variation=22962.957 writing Gaussian curvature to ./rh.white.preaparc.K... done. writing mean curvature to ./rh.white.preaparc.H... rh.white.preaparc.H mris_curvature done. rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 144 vertices thresholded to be in k1 ~ [-0.20 0.34], k2 ~ [-0.11 0.10] total integrated curvature = 0.659*4pi (8.285) --> 0 handles ICI = 1.5, FI = 9.3, variation=157.509 115 vertices thresholded to be in [-0.02 0.01] writing Gaussian curvature to ./rh.inflated.K... thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 123 vertices thresholded to be in [-0.12 0.17] done. writing mean curvature to ./rh.inflated.H... curvature mean = -0.016, std = 0.024 rh.inflated.H mris_curvature done. #-------------------------------------------- #@# Sphere lh Fri Nov 7 03:19:38 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_sphere -threads 1 -seed 1234 ../surf/lh.inflated ../surf/lh.sphere Setting OMP_NUM_THREADS=1 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.292... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=c-03-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.42 pass 1: epoch 2 of 3 starting distance error %19.41 unfolding complete - removing small folds... starting distance error %19.35 removing remaining folds... final distance error %19.37 MRISunfold() return, current seed 1234 -01: dt=0.0000, 1 negative triangles VmPeak 514172 170: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/lh.sphere spherical transformation took 0.0912 hours FSRUNTIME@ mris_sphere 0.0912 hours 1 threads #VMPC# mris_sphere VmPeak 514172 mris_sphere done #-------------------------------------------- #@# Sphere rh Fri Nov 7 03:25:06 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_sphere -threads 1 -seed 1234 ../surf/rh.inflated ../surf/rh.sphere Setting OMP_NUM_THREADS=1 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.291... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=c-03-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.39 pass 1: epoch 2 of 3 starting distance error %19.38 unfolding complete - removing small folds... starting distance error %19.31 removing remaining folds... final distance error %19.33 MRISunfold() return, current seed 1234 -01: dt=0.0000, 7 negative triangles VmPeak 511620 169: dt=0.9900, 7 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.0898 hours FSRUNTIME@ mris_sphere 0.0898 hours 1 threads #VMPC# mris_sphere VmPeak 511620 mris_sphere done #-------------------------------------------- #@# Surf Reg lh Fri Nov 7 03:30:29 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_register -curv -threads 1 ../surf/lh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts cmdline mris_register -curv -threads 1 ../surf/lh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 8.0.0 8.0.0 reading surface from ../surf/lh.sphere... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=c-03-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=c-03-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc tol=1.0e+00, sigma=0.5, host=c-03-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = 0.000, std = 5.691 curvature mean = 0.035, std = 0.818 curvature mean = 0.014, std = 0.876 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (1.50, -6.00, 5.50) sse = 219097.4, elapsed since starting=0.2045 min MRISrigidBodyAlignGlobal() done 0.20 min curvature mean = 0.015, std = 0.827 curvature mean = 0.005, std = 0.952 curvature mean = 0.013, std = 0.837 curvature mean = 0.002, std = 0.981 curvature mean = 0.012, std = 0.840 curvature mean = 0.001, std = 0.993 2 Reading smoothwm curvature mean = -0.019, std = 0.278 curvature mean = 0.044, std = 0.246 curvature mean = 0.062, std = 0.361 curvature mean = 0.039, std = 0.305 curvature mean = 0.032, std = 0.552 curvature mean = 0.038, std = 0.332 curvature mean = 0.016, std = 0.693 curvature mean = 0.038, std = 0.343 curvature mean = 0.005, std = 0.801 MRISregister() return, current seed 0 -01: dt=0.0000, 32 negative triangles VmPeak 499796 113: dt=0.9900, 32 negative triangles expanding nbhd size to 1 114: dt=0.9900, 39 negative triangles 115: dt=0.9900, 28 negative triangles 116: dt=0.9900, 20 negative triangles 117: dt=0.9900, 21 negative triangles 118: dt=0.9900, 20 negative triangles 119: dt=0.9900, 23 negative triangles 120: dt=0.9900, 21 negative triangles 121: dt=0.9900, 24 negative triangles 122: dt=0.9900, 24 negative triangles 123: dt=0.9900, 25 negative triangles 124: dt=0.9900, 25 negative triangles 125: dt=0.9900, 23 negative triangles 126: dt=0.9405, 23 negative triangles 127: dt=0.9405, 22 negative triangles 128: dt=0.9405, 20 negative triangles 129: dt=0.9405, 22 negative triangles 130: dt=0.9405, 22 negative triangles 131: dt=0.9405, 21 negative triangles 132: dt=0.9405, 20 negative triangles 133: dt=0.9405, 21 negative triangles 134: dt=0.9405, 25 negative triangles 135: dt=0.9405, 22 negative triangles 136: dt=0.8935, 23 negative triangles 137: dt=0.8935, 22 negative triangles 138: dt=0.8935, 22 negative triangles 139: dt=0.8935, 20 negative triangles 140: dt=0.8935, 21 negative triangles 141: dt=0.8935, 20 negative triangles 142: dt=0.8935, 20 negative triangles 143: dt=0.8935, 19 negative triangles 144: dt=0.8935, 17 negative triangles 145: dt=0.8935, 17 negative triangles 146: dt=0.8935, 20 negative triangles 147: dt=0.8935, 20 negative triangles 148: dt=0.8935, 18 negative triangles 149: dt=0.8935, 17 negative triangles 150: dt=0.8935, 16 negative triangles 151: dt=0.8935, 17 negative triangles 152: dt=0.8935, 16 negative triangles 153: dt=0.8935, 12 negative triangles 154: dt=0.8935, 11 negative triangles 155: dt=0.8935, 9 negative triangles 156: dt=0.8935, 8 negative triangles 157: dt=0.8935, 4 negative triangles 158: dt=0.8935, 5 negative triangles 159: dt=0.8935, 6 negative triangles 160: dt=0.8935, 2 negative triangles 161: dt=0.8935, 4 negative triangles 162: dt=0.8935, 3 negative triangles 163: dt=0.8935, 2 negative triangles 164: dt=0.8935, 2 negative triangles writing registered surface to ../surf/lh.sphere.reg... registration took 0.07 hours #VMPC# mris_register VmPeak 499796 FSRUNTIME@ mris_register 0.0737 hours 1 threads ln -sf lh.sphere.reg lh.fsaverage.sphere.reg #-------------------------------------------- #@# Surf Reg rh Fri Nov 7 03:34:55 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_register -curv -threads 1 ../surf/rh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts cmdline mris_register -curv -threads 1 ../surf/rh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 8.0.0 8.0.0 reading surface from ../surf/rh.sphere... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=c-03-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=c-03-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc tol=1.0e+00, sigma=0.5, host=c-03-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = 0.000, std = 5.658 curvature mean = 0.039, std = 0.815 curvature mean = 0.012, std = 0.877 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (6.50, -3.50, 9.00) sse = 224003.4, elapsed since starting=0.1900 min MRISrigidBodyAlignGlobal() done 0.19 min curvature mean = 0.027, std = 0.828 curvature mean = 0.005, std = 0.955 curvature mean = 0.025, std = 0.838 curvature mean = 0.002, std = 0.983 curvature mean = 0.024, std = 0.841 curvature mean = 0.001, std = 0.993 2 Reading smoothwm curvature mean = -0.020, std = 0.287 curvature mean = 0.043, std = 0.241 curvature mean = 0.060, std = 0.355 curvature mean = 0.038, std = 0.300 curvature mean = 0.032, std = 0.541 curvature mean = 0.037, std = 0.327 curvature mean = 0.016, std = 0.679 curvature mean = 0.036, std = 0.339 curvature mean = 0.003, std = 0.791 MRISregister() return, current seed 0 -01: dt=0.0000, 7 negative triangles VmPeak 498040 112: dt=0.9900, 7 negative triangles 113: dt=0.9900, 1 negative triangles writing registered surface to ../surf/rh.sphere.reg... registration took 0.07 hours #VMPC# mris_register VmPeak 498040 FSRUNTIME@ mris_register 0.0707 hours 1 threads ln -sf rh.sphere.reg rh.fsaverage.sphere.reg #-------------------------------------------- #@# Jacobian white lh Fri Nov 7 03:39:09 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white.preaparc... writing curvature file ../surf/lh.jacobian_white type -1 #-------------------------------------------- #@# Jacobian white rh Fri Nov 7 03:39:10 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white.preaparc... writing curvature file ../surf/rh.jacobian_white type -1 #-------------------------------------------- #@# AvgCurv lh Fri Nov 7 03:39:11 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mrisp_paint -a 5 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/lh.avg_curv... #-------------------------------------------- #@# AvgCurv rh Fri Nov 7 03:39:11 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mrisp_paint -a 5 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc lh Fri Nov 7 03:39:12 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-08YFFYY2_ses-00A lh ../surf/lh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.8 using min determinant for regularization = 0.006 0 singular and 342 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 944 labels changed using aseg relabeling using gibbs priors... 000: 3067 changed, 127731 examined... 001: 731 changed, 12593 examined... 002: 162 changed, 4127 examined... 003: 53 changed, 986 examined... 004: 20 changed, 333 examined... 005: 10 changed, 120 examined... 006: 0 changed, 60 examined... 218 labels changed using aseg 000: 93 total segments, 49 labels (103 vertices) changed 001: 44 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 5 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1685 vertices marked for relabeling... 1685 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 6 seconds. #----------------------------------------- #@# Cortical Parc rh Fri Nov 7 03:39:18 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-08YFFYY2_ses-00A rh ../surf/rh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1101 labels changed using aseg relabeling using gibbs priors... 000: 2649 changed, 126591 examined... 001: 567 changed, 11401 examined... 002: 113 changed, 3317 examined... 003: 30 changed, 723 examined... 004: 14 changed, 188 examined... 005: 7 changed, 91 examined... 006: 3 changed, 43 examined... 007: 2 changed, 17 examined... 008: 2 changed, 10 examined... 009: 1 changed, 11 examined... 010: 1 changed, 6 examined... 011: 1 changed, 8 examined... 012: 0 changed, 7 examined... 150 labels changed using aseg 000: 89 total segments, 51 labels (130 vertices) changed 001: 39 total segments, 1 labels (1 vertices) changed 002: 38 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 2 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1364 vertices marked for relabeling... 1364 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 6 seconds. #-------------------------------------------- #@# WhiteSurfs lh Fri Nov 7 03:39:24 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof Reading in input surface ../surf/lh.white.preaparc Not smoothing input surface Area 255458 0.33938 0.12524 0.001519 1.7175 Corner 766374 60.00000 14.97652 0.570846 177.4845 Edge 383187 0.89779 0.20838 0.016244 3.2034 Hinge 383187 11.45124 12.35649 0.000004 179.9368 Reading in aparc ../label/lh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1072 MRIclipBrightWM(): nthresh=37315, wmmin=5, clip=110 MRIfindBrightNonWM(): 50 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1072 Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex.label MRISripNotLabel() ripped 8170/127731 vertices (119561 unripped) Reading in ripping surface ../surf/lh.white.preaparc Reading in aparc ../label/lh.aparc.annot for ripsurf [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Ripping BG MRISripBasalGanglia(): 1 -2 2 0.5 Ripping lateralorbitofrontal MRISripBasalGanglia(): 1 -2 2 0.5 ripped 610 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 63866: xyz = (-43.0563,-10.9545,67.6894) oxyz = (-43.0563,-10.9545,67.6894) wxzy = (-43.0563,-10.9545,67.6894) pxyz = (0,0,0) CBVO Creating mask 127731 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 811732 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=2 had to be increased for 154 vertices, nripped=8780 mean border=79.2, 27 (27) missing vertices, mean dist 0.4 [0.8 (%9.6)->0.5 (%90.4))] %71 local maxima, %22 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1163 min Finding expansion regions mean absolute distance = 0.56 +- 0.72 3206 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-03-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=2045461.9, rms=8.837 001: dt: 0.5000, sse=751572.3, rms=4.857 (45.037%) 002: dt: 0.5000, sse=529400.6, rms=3.823 (21.294%) 003: dt: 0.5000, sse=513614.9, rms=3.729 (2.449%) 004: dt: 0.5000, sse=481931.8, rms=3.531 (5.312%) rms = 3.6667/3.5310, sse=502465.9/481931.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 005: dt: 0.2500, sse=321717.9, rms=2.422 (31.394%) 006: dt: 0.2500, sse=276510.4, rms=1.930 (20.348%) 007: dt: 0.2500, sse=255177.8, rms=1.738 (9.915%) rms = 1.6991/1.7382, sse=253663.5/255177.8, time step reduction 2 of 3 to 0.125 0 0 1 008: dt: 0.2500, sse=253663.5, rms=1.699 (2.251%) 009: dt: 0.1250, sse=246207.6, rms=1.615 (4.959%) rms = 1.6029/1.6149, sse=245490.5/246207.6, time step reduction 3 of 3 to 0.062 0 0 1 010: dt: 0.1250, sse=245490.5, rms=1.603 (0.743%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 1591112 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=1 had to be increased for 94 vertices, nripped=8780 mean border=83.7, 60 (4) missing vertices, mean dist -0.2 [0.3 (%83.3)->0.3 (%16.7))] %85 local maxima, % 8 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0833 min Finding expansion regions mean absolute distance = 0.32 +- 0.43 2790 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-03-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=936448.6, rms=5.578 011: dt: 0.5000, sse=503524.0, rms=3.573 (35.942%) rms = 3.7967/3.5733, sse=541188.6/503524.0, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 012: dt: 0.2500, sse=358995.1, rms=2.596 (27.342%) 013: dt: 0.2500, sse=289590.5, rms=1.948 (24.961%) 014: dt: 0.2500, sse=262646.4, rms=1.632 (16.250%) 015: dt: 0.2500, sse=253533.8, rms=1.504 (7.800%) 016: dt: 0.2500, sse=249410.2, rms=1.439 (4.375%) rms = 1.4166/1.4386, sse=248605.2/249410.3, time step reduction 2 of 3 to 0.125 0 0 1 017: dt: 0.2500, sse=248605.2, rms=1.417 (1.525%) 018: dt: 0.1250, sse=243200.1, rms=1.338 (5.530%) rms = 1.3305/1.3383, sse=243157.3/243200.1, time step reduction 3 of 3 to 0.062 0 0 1 019: dt: 0.1250, sse=243157.3, rms=1.331 (0.580%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 1705820 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 143 vertices, nripped=8780 mean border=85.9, 76 (3) missing vertices, mean dist -0.1 [0.2 (%71.8)->0.2 (%28.2))] %89 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0454 min Finding expansion regions mean absolute distance = 0.19 +- 0.30 2391 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-03-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=405364.2, rms=2.982 rms = 3.1941/2.9821, sse=450754.3/405364.2, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 020: dt: 0.2500, sse=292920.8, rms=2.030 (31.914%) 021: dt: 0.2500, sse=245370.1, rms=1.419 (30.088%) 022: dt: 0.2500, sse=240962.6, rms=1.320 (7.025%) rms = 1.3079/1.3198, sse=237196.6/240962.6, time step reduction 2 of 3 to 0.125 0 0 1 023: dt: 0.2500, sse=237196.6, rms=1.308 (0.897%) 024: dt: 0.1250, sse=231970.9, rms=1.221 (6.637%) rms = 1.2141/1.2211, sse=231438.1/231970.9, time step reduction 3 of 3 to 0.062 0 0 1 025: dt: 0.1250, sse=231438.1, rms=1.214 (0.571%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 1814536 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 164 vertices, nripped=8780 mean border=86.5, 122 (3) missing vertices, mean dist -0.0 [0.2 (%54.8)->0.2 (%45.2))] %90 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0284 min Finding expansion regions mean absolute distance = 0.17 +- 0.25 2254 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-03-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=244858.4, rms=1.455 rms = 1.8705/1.4550, sse=293297.9/244858.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 026: dt: 0.2500, sse=223343.7, rms=1.081 (25.687%) 027: dt: 0.2500, sse=221135.2, rms=1.005 (7.092%) rms = 1.0135/1.0046, sse=219725.0/221135.2, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 0.9990/1.0046, sse=220369.0/221135.2, time step reduction 3 of 3 to 0.062 0 0 1 028: dt: 0.1250, sse=220369.0, rms=0.999 (0.560%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.01 minutes Writing output to ../surf/lh.white #VMPC# mris_place_surfaces VmPeak 1849796 mris_place_surface done #-------------------------------------------- #@# WhiteSurfs rh Fri Nov 7 03:41:30 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof Reading in input surface ../surf/rh.white.preaparc Not smoothing input surface Area 253178 0.34291 0.12806 0.000425 2.0366 Corner 759534 60.00000 15.23091 0.070400 179.7369 Edge 379767 0.90290 0.21294 0.008074 3.7243 Hinge 379767 11.48048 12.67627 0.000040 179.9891 Reading in aparc ../label/rh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1072 MRIclipBrightWM(): nthresh=37315, wmmin=5, clip=110 MRIfindBrightNonWM(): 50 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1072 Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex.label MRISripNotLabel() ripped 8586/126591 vertices (118005 unripped) Reading in ripping surface ../surf/rh.white.preaparc Reading in aparc ../label/rh.aparc.annot for ripsurf [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Ripping BG MRISripBasalGanglia(): 1 -2 2 0.5 Ripping lateralorbitofrontal MRISripBasalGanglia(): 1 -2 2 0.5 ripped 637 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 63296: xyz = (11.1011,-12.7987,6.41627) oxyz = (11.1011,-12.7987,6.41627) wxzy = (11.1011,-12.7987,6.41627) pxyz = (0,0,0) CBVO Creating mask 126591 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 821592 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=2 had to be increased for 137 vertices, nripped=9223 mean border=79.0, 36 (36) missing vertices, mean dist 0.4 [0.9 (%9.5)->0.5 (%90.5))] %69 local maxima, %23 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1126 min Finding expansion regions mean absolute distance = 0.54 +- 0.72 2492 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-03-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=1873876.8, rms=8.473 001: dt: 0.5000, sse=694009.6, rms=4.677 (44.804%) 002: dt: 0.5000, sse=505831.8, rms=3.728 (20.283%) rms = 3.7275/3.7281, sse=505356.4/505831.8, time step reduction 1 of 3 to 0.250 0 0 1 003: dt: 0.5000, sse=505356.4, rms=3.727 (0.016%) 004: dt: 0.2500, sse=286618.8, rms=2.112 (43.352%) 005: dt: 0.2500, sse=258809.4, rms=1.806 (14.478%) 006: dt: 0.2500, sse=252590.6, rms=1.721 (4.717%) 007: dt: 0.2500, sse=248024.6, rms=1.653 (3.920%) rms = 1.6331/1.6532, sse=247449.4/248024.6, time step reduction 2 of 3 to 0.125 0 0 1 008: dt: 0.2500, sse=247449.4, rms=1.633 (1.215%) 009: dt: 0.1250, sse=241812.8, rms=1.547 (5.291%) rms = 1.5329/1.5467, sse=241066.6/241812.8, time step reduction 3 of 3 to 0.062 0 0 1 010: dt: 0.1250, sse=241066.6, rms=1.533 (0.895%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 1542892 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=1 had to be increased for 102 vertices, nripped=9223 mean border=83.3, 23 (2) missing vertices, mean dist -0.2 [0.3 (%81.6)->0.2 (%18.4))] %83 local maxima, %10 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0806 min Finding expansion regions mean absolute distance = 0.31 +- 0.44 2099 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-03-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=847905.4, rms=5.267 011: dt: 0.5000, sse=471885.8, rms=3.396 (35.526%) rms = 3.6823/3.3959, sse=514305.1/471885.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 012: dt: 0.2500, sse=328840.8, rms=2.344 (30.973%) 013: dt: 0.2500, sse=267073.4, rms=1.718 (26.710%) 014: dt: 0.2500, sse=246654.0, rms=1.440 (16.164%) 015: dt: 0.2500, sse=241390.6, rms=1.361 (5.495%) rms = 1.3313/1.3611, sse=239130.7/241390.6, time step reduction 2 of 3 to 0.125 0 0 1 016: dt: 0.2500, sse=239130.7, rms=1.331 (2.195%) 017: dt: 0.1250, sse=236972.3, rms=1.225 (8.010%) rms = 1.2226/1.2246, sse=231958.6/236972.3, time step reduction 3 of 3 to 0.062 0 0 1 018: dt: 0.1250, sse=231958.6, rms=1.223 (0.168%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 1668376 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 142 vertices, nripped=9223 mean border=85.5, 45 (2) missing vertices, mean dist -0.1 [0.2 (%70.4)->0.2 (%29.6))] %88 local maxima, % 5 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0437 min Finding expansion regions mean absolute distance = 0.20 +- 0.31 2811 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-03-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=393693.2, rms=2.940 rms = 3.1584/2.9403, sse=439715.7/393693.2, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=287176.9, rms=2.009 (31.679%) 020: dt: 0.2500, sse=238816.8, rms=1.358 (32.398%) 021: dt: 0.2500, sse=230543.0, rms=1.239 (8.737%) rms = 1.2206/1.2394, sse=230082.4/230543.0, time step reduction 2 of 3 to 0.125 0 0 1 022: dt: 0.2500, sse=230082.4, rms=1.221 (1.518%) 023: dt: 0.1250, sse=224970.2, rms=1.120 (8.231%) rms = 1.1088/1.1201, sse=224652.0/224970.2, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=224652.0, rms=1.109 (1.012%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3537750; border_low = 68.0000000; outside_low = 58.1055980; outside_hi = 114.3537750; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 1773996 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 182 vertices, nripped=9223 mean border=86.1, 108 (2) missing vertices, mean dist -0.0 [0.2 (%54.8)->0.2 (%45.2))] %89 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0276 min Finding expansion regions mean absolute distance = 0.18 +- 0.26 2534 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-03-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=239348.4, rms=1.391 rms = 1.8374/1.3911, sse=288463.0/239348.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=218727.2, rms=0.977 (29.735%) 026: dt: 0.2500, sse=215402.9, rms=0.868 (11.217%) rms = 0.8915/0.8678, sse=217591.8/215402.9, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step rms = 0.8610/0.8678, sse=214919.2/215402.9, time step reduction 3 of 3 to 0.062 0 0 1 027: dt: 0.1250, sse=214919.2, rms=0.861 (0.792%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Removing intersections #ET# mris_place_surface 1.98 minutes Writing output to ../surf/rh.white #VMPC# mris_place_surfaces VmPeak 1811812 mris_place_surface done #-------------------------------------------- #@# T1PialSurf lh Fri Nov 7 03:43:35 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white --restore-255 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white --restore-255 Reading in input surface ../surf/lh.white Not smoothing input surface Area 255458 0.34323 0.14109 0.000464 1.9610 Corner 766374 60.00000 16.78938 0.085079 179.3222 Edge 383187 0.90506 0.23001 0.012026 3.4826 Hinge 383187 11.76792 13.31305 0.000006 179.7030 Reading white surface coordinates from ../surf/lh.white Reading repulsion surface coordinates from ../surf/lh.white Reading in aparc ../label/lh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=37315, wmmin=5, clip=110 MRIfindBrightNonWM(): 50 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 66.9815 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex+hipamyg.label MRISripNotLabel() ripped 6048/127731 vertices (121683 unripped) INFO: rip surface needed but not specified, so using input surface Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=0 nspr=0.3 curv=1 vertex 63866: xyz = (-43.1974,-10.9448,67.693) oxyz = (-43.1974,-10.9448,67.693) wxzy = (-43.1974,-10.9448,67.693) pxyz = (-43.1974,-10.9448,67.693) CBVO Creating mask 127731 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6462250; border_hi = 58.1055980; border_low = 38.3167880; outside_low = 10.0000000; outside_hi = 53.1583940; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 757860 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=2 had to be increased for 257 vertices, nripped=6048 mean border=56.0, 87 (87) missing vertices, mean dist 1.8 [1.0 (%0.0)->2.9 (%100.0))] %12 local maxima, %47 large gradients and %37 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1040 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-03-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=23452824.0, rms=30.930 001: dt: 0.5000, sse=15085146.0, rms=24.750 (19.980%) 002: dt: 0.5000, sse=9892483.0, rms=19.975 (19.294%) 003: dt: 0.5000, sse=7161254.5, rms=16.929 (15.247%) 004: dt: 0.5000, sse=5723150.5, rms=15.079 (10.931%) 005: dt: 0.5000, sse=4837778.0, rms=13.815 (8.382%) 006: dt: 0.5000, sse=4081443.0, rms=12.634 (8.545%) 007: dt: 0.5000, sse=3368788.0, rms=11.410 (9.688%) 008: dt: 0.5000, sse=2751160.0, rms=10.231 (10.333%) 009: dt: 0.5000, sse=2231497.2, rms=9.121 (10.850%) 010: dt: 0.5000, sse=1798865.5, rms=8.080 (11.413%) 011: dt: 0.5000, sse=1456930.0, rms=7.150 (11.515%) 012: dt: 0.5000, sse=1191400.4, rms=6.333 (11.426%) 013: dt: 0.5000, sse=1003391.1, rms=5.683 (10.268%) 014: dt: 0.5000, sse=884221.4, rms=5.228 (8.002%) 015: dt: 0.5000, sse=824291.8, rms=4.981 (4.715%) 016: dt: 0.5000, sse=790578.5, rms=4.836 (2.924%) 017: dt: 0.5000, sse=770012.8, rms=4.743 (1.912%) 018: dt: 0.5000, sse=759151.4, rms=4.692 (1.081%) rms = 4.6480/4.6920, sse=749994.5/759151.4, time step reduction 1 of 3 to 0.250 0 0 1 019: dt: 0.5000, sse=749994.6, rms=4.648 (0.938%) 020: dt: 0.2500, sse=600703.2, rms=3.907 (15.947%) 021: dt: 0.2500, sse=564125.6, rms=3.706 (5.127%) rms = 3.6889/3.7065, sse=561465.0/564125.5, time step reduction 2 of 3 to 0.125 0 0 1 022: dt: 0.2500, sse=561465.0, rms=3.689 (0.475%) 023: dt: 0.1250, sse=536367.4, rms=3.542 (3.988%) rms = 3.5145/3.5418, sse=531851.6/536367.5, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=531851.6, rms=3.515 (0.770%) maximum number of reductions reached, breaking from loop positioning took 1.3 minutes done positioning surface Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6462250; border_hi = 58.1055980; border_low = 38.3167880; outside_low = 10.0000000; outside_hi = 53.1583940; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 1172256 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=1 had to be increased for 10213 vertices, nripped=6048 mean border=54.8, 1760 (8) missing vertices, mean dist 0.1 [0.1 (%50.4)->0.5 (%49.6))] %26 local maxima, %35 large gradients and %33 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0267 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-03-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=690721.8, rms=4.062 rms = 4.3594/4.0617, sse=751315.6/690721.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=625143.0, rms=3.711 (8.625%) 026: dt: 0.2500, sse=598945.6, rms=3.562 (4.020%) rms = 3.5517/3.5622, sse=596665.0/598945.6, time step reduction 2 of 3 to 0.125 0 0 1 027: dt: 0.2500, sse=596664.9, rms=3.552 (0.294%) 028: dt: 0.1250, sse=568661.9, rms=3.381 (4.794%) rms = 3.3452/3.3815, sse=562729.8/568661.9, time step reduction 3 of 3 to 0.062 0 0 1 029: dt: 0.1250, sse=562729.8, rms=3.345 (1.073%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6462250; border_hi = 58.1055980; border_low = 38.3167880; outside_low = 10.0000000; outside_hi = 53.1583940; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 1193800 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 10417 vertices, nripped=6048 mean border=53.9, 1861 (6) missing vertices, mean dist 0.1 [0.1 (%44.3)->0.3 (%55.7))] %42 local maxima, %18 large gradients and %33 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0155 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-03-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=621976.8, rms=3.680 rms = 4.2976/3.6800, sse=740358.5/621976.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 030: dt: 0.2500, sse=584961.2, rms=3.465 (5.848%) rms = 3.4469/3.4648, sse=581451.4/584961.3, time step reduction 2 of 3 to 0.125 0 0 1 031: dt: 0.2500, sse=581451.4, rms=3.447 (0.517%) 032: dt: 0.1250, sse=568344.5, rms=3.366 (2.350%) rms = 3.3361/3.3659, sse=563326.2/568344.5, time step reduction 3 of 3 to 0.062 0 0 1 033: dt: 0.1250, sse=563326.2, rms=3.336 (0.884%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6462250; border_hi = 58.1055980; border_low = 38.3167880; outside_low = 10.0000000; outside_hi = 53.1583940; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=127731 Gdiag_no=-1 VMPeak = 1211764 vno start=0, stop=127731 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 8828 vertices, nripped=6048 mean border=53.3, 4027 (3) missing vertices, mean dist 0.0 [0.2 (%47.8)->0.3 (%52.2))] %45 local maxima, %16 large gradients and %32 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0100 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-03-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=587282.4, rms=3.480 rms = 3.9666/3.4796, sse=672379.4/587282.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 034: dt: 0.2500, sse=570561.0, rms=3.379 (2.884%) rms = 3.3447/3.3792, sse=563673.3/570561.0, time step reduction 2 of 3 to 0.125 0 0 1 035: dt: 0.2500, sse=563673.3, rms=3.345 (1.021%) 036: dt: 0.1250, sse=550723.3, rms=3.263 (2.452%) rms = 3.2146/3.2627, sse=542783.4/550723.3, time step reduction 3 of 3 to 0.062 0 0 1 037: dt: 0.1250, sse=542783.4, rms=3.215 (1.474%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Pinning medial wall to white surface Removing intersections removing intersecting faces 000: 24 intersecting 001: 5 intersecting terminating search with 0 intersecting #ET# mris_place_surface 2.34 minutes Writing output to ../surf/lh.pial.T1 #VMPC# mris_place_surfaces VmPeak 1228532 mris_place_surface done #-------------------------------------------- #@# T1PialSurf rh Fri Nov 7 03:46:00 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white --restore-255 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white --restore-255 Reading in input surface ../surf/rh.white Not smoothing input surface Area 253178 0.34695 0.14276 0.000843 2.0366 Corner 759534 60.00000 16.85084 0.299088 179.0777 Edge 379767 0.91022 0.23311 0.016211 3.7243 Hinge 379767 11.78116 13.58046 0.000036 179.9913 Reading white surface coordinates from ../surf/rh.white Reading repulsion surface coordinates from ../surf/rh.white Reading in aparc ../label/rh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=37315, wmmin=5, clip=110 MRIfindBrightNonWM(): 50 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 66.9815 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex+hipamyg.label MRISripNotLabel() ripped 6261/126591 vertices (120330 unripped) INFO: rip surface needed but not specified, so using input surface Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=0 nspr=0.3 curv=1 vertex 63296: xyz = (11.1011,-12.7987,6.41627) oxyz = (11.1011,-12.7987,6.41627) wxzy = (11.1011,-12.7987,6.41627) pxyz = (11.1011,-12.7987,6.41627) CBVO Creating mask 126591 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6462250; border_hi = 58.1055980; border_low = 38.3167880; outside_low = 10.0000000; outside_hi = 53.1583940; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 752600 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=2 had to be increased for 253 vertices, nripped=6261 mean border=56.0, 96 (96) missing vertices, mean dist 1.8 [0.9 (%0.0)->2.9 (%100.0))] %12 local maxima, %47 large gradients and %37 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1013 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-03-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=22619318.0, rms=30.542 001: dt: 0.5000, sse=14440875.0, rms=24.345 (20.289%) 002: dt: 0.5000, sse=9382544.0, rms=19.552 (19.688%) 003: dt: 0.5000, sse=6726719.0, rms=16.485 (15.687%) 004: dt: 0.5000, sse=5326251.0, rms=14.609 (11.381%) 005: dt: 0.5000, sse=4445211.5, rms=13.292 (9.015%) 006: dt: 0.5000, sse=3699578.8, rms=12.065 (9.234%) 007: dt: 0.5000, sse=3022340.5, rms=10.829 (10.241%) 008: dt: 0.5000, sse=2462853.2, rms=9.690 (10.522%) 009: dt: 0.5000, sse=2009258.9, rms=8.655 (10.674%) 010: dt: 0.5000, sse=1630837.6, rms=7.685 (11.210%) 011: dt: 0.5000, sse=1330360.5, rms=6.816 (11.304%) 012: dt: 0.5000, sse=1099239.8, rms=6.063 (11.056%) 013: dt: 0.5000, sse=944765.1, rms=5.500 (9.274%) 014: dt: 0.5000, sse=842647.0, rms=5.093 (7.399%) 015: dt: 0.5000, sse=788119.9, rms=4.860 (4.582%) 016: dt: 0.5000, sse=754464.8, rms=4.708 (3.120%) 017: dt: 0.5000, sse=737525.4, rms=4.628 (1.702%) 018: dt: 0.5000, sse=721681.8, rms=4.552 (1.652%) rms = 4.5110/4.5519, sse=713655.4/721681.8, time step reduction 1 of 3 to 0.250 0 0 1 019: dt: 0.5000, sse=713655.4, rms=4.511 (0.898%) 020: dt: 0.2500, sse=567379.4, rms=3.751 (16.859%) 021: dt: 0.2500, sse=530366.2, rms=3.536 (5.710%) rms = 3.5080/3.5364, sse=526110.1/530366.2, time step reduction 2 of 3 to 0.125 0 0 1 022: dt: 0.2500, sse=526110.1, rms=3.508 (0.802%) 023: dt: 0.1250, sse=504852.2, rms=3.375 (3.785%) rms = 3.3480/3.3752, sse=500606.6/504852.2, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=500606.6, rms=3.348 (0.807%) maximum number of reductions reached, breaking from loop positioning took 1.2 minutes done positioning surface Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6462250; border_hi = 58.1055980; border_low = 38.3167880; outside_low = 10.0000000; outside_hi = 53.1583940; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 1158392 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=1 had to be increased for 9538 vertices, nripped=6261 mean border=54.7, 1741 (19) missing vertices, mean dist 0.1 [0.1 (%48.6)->0.5 (%51.4))] %27 local maxima, %34 large gradients and %32 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0265 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-03-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=672509.0, rms=4.002 rms = 4.1900/4.0019, sse=709532.8/672509.0, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=609345.6, rms=3.655 (8.669%) 026: dt: 0.2500, sse=576992.6, rms=3.464 (5.230%) 027: dt: 0.2500, sse=565528.7, rms=3.396 (1.943%) rms = 3.3750/3.3965, sse=561997.3/565528.7, time step reduction 2 of 3 to 0.125 0 0 1 028: dt: 0.2500, sse=561997.3, rms=3.375 (0.631%) 029: dt: 0.1250, sse=540185.6, rms=3.234 (4.191%) rms = 3.1979/3.2336, sse=534700.1/540185.6, time step reduction 3 of 3 to 0.062 0 0 1 030: dt: 0.1250, sse=534700.1, rms=3.198 (1.103%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6462250; border_hi = 58.1055980; border_low = 38.3167880; outside_low = 10.0000000; outside_hi = 53.1583940; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 1183400 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 10012 vertices, nripped=6261 mean border=53.7, 1866 (10) missing vertices, mean dist 0.1 [0.2 (%42.7)->0.3 (%57.3))] %43 local maxima, %18 large gradients and %33 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0153 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-03-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=598252.2, rms=3.575 rms = 4.1501/3.5746, sse=704061.5/598252.2, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 031: dt: 0.2500, sse=558223.6, rms=3.331 (6.818%) rms = 3.2936/3.3309, sse=551961.7/558223.6, time step reduction 2 of 3 to 0.125 0 0 1 032: dt: 0.2500, sse=551961.7, rms=3.294 (1.118%) 033: dt: 0.1250, sse=538447.5, rms=3.205 (2.678%) rms = 3.1742/3.2054, sse=533519.4/538447.5, time step reduction 3 of 3 to 0.062 0 0 1 034: dt: 0.1250, sse=533519.4, rms=3.174 (0.972%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6462250; border_hi = 58.1055980; border_low = 38.3167880; outside_low = 10.0000000; outside_hi = 53.1583940; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=126591 Gdiag_no=-1 VMPeak = 1200512 vno start=0, stop=126591 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 8658 vertices, nripped=6261 mean border=53.1, 3805 (10) missing vertices, mean dist 0.0 [0.2 (%47.1)->0.3 (%52.9))] %45 local maxima, %16 large gradients and %32 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0100 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-03-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=556951.9, rms=3.325 rms = 3.8038/3.3253, sse=636224.6/556951.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 035: dt: 0.2500, sse=540891.0, rms=3.223 (3.078%) rms = 3.1859/3.2229, sse=534024.3/540891.0, time step reduction 2 of 3 to 0.125 0 0 1 036: dt: 0.2500, sse=534024.3, rms=3.186 (1.148%) 037: dt: 0.1250, sse=521794.7, rms=3.104 (2.587%) rms = 3.0635/3.1035, sse=515510.1/521794.7, time step reduction 3 of 3 to 0.062 0 0 1 038: dt: 0.1250, sse=515510.1, rms=3.064 (1.289%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Pinning medial wall to white surface Removing intersections removing intersecting faces 000: 17 intersecting terminating search with 0 intersecting #ET# mris_place_surface 2.28 minutes Writing output to ../surf/rh.pial.T1 #VMPC# mris_place_surfaces VmPeak 1217980 mris_place_surface done #@# white curv lh Fri Nov 7 03:48:22 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv insurf ../surf/lh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv type -1 #@# white area lh Fri Nov 7 03:48:23 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area writing curvature file ../surf/lh.area type -1 #@# pial curv lh Fri Nov 7 03:48:23 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial insurf ../surf/lh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv.pial type -1 #@# pial area lh Fri Nov 7 03:48:24 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial writing curvature file ../surf/lh.area.pial type -1 #@# thickness lh Fri Nov 7 03:48:25 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness 0 of 127731 vertices processed 25000 of 127731 vertices processed 50000 of 127731 vertices processed 75000 of 127731 vertices processed 100000 of 127731 vertices processed 125000 of 127731 vertices processed 0 of 127731 vertices processed 25000 of 127731 vertices processed 50000 of 127731 vertices processed 75000 of 127731 vertices processed 100000 of 127731 vertices processed 125000 of 127731 vertices processed thickness calculation complete, 242:983 truncations. 49974 vertices at 0 distance 104169 vertices at 1 distance 67803 vertices at 2 distance 23071 vertices at 3 distance 6905 vertices at 4 distance 2144 vertices at 5 distance 738 vertices at 6 distance 246 vertices at 7 distance 91 vertices at 8 distance 59 vertices at 9 distance 48 vertices at 10 distance 44 vertices at 11 distance 31 vertices at 12 distance 28 vertices at 13 distance 21 vertices at 14 distance 16 vertices at 15 distance 12 vertices at 16 distance 14 vertices at 17 distance 12 vertices at 18 distance 14 vertices at 19 distance 22 vertices at 20 distance writing curvature file ../surf/lh.thickness type -1 #@# area and vertex vol lh Fri Nov 7 03:48:42 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12384 mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12376 mris_convert --volume sub-08YFFYY2_ses-00A lh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.volume mris_convert --volume sub-08YFFYY2_ses-00A lh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.volume masking with /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Total face volume 256927 Total vertex volume 256759 (mask=0) #@# sub-08YFFYY2_ses-00A lh 256759 vertexvol Done #@# white curv rh Fri Nov 7 03:48:44 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv insurf ../surf/rh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv type -1 #@# white area rh Fri Nov 7 03:48:45 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area writing curvature file ../surf/rh.area type -1 #@# pial curv rh Fri Nov 7 03:48:45 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial insurf ../surf/rh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv.pial type -1 #@# pial area rh Fri Nov 7 03:48:46 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial writing curvature file ../surf/rh.area.pial type -1 #@# thickness rh Fri Nov 7 03:48:47 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness 0 of 126591 vertices processed 25000 of 126591 vertices processed 50000 of 126591 vertices processed 75000 of 126591 vertices processed 100000 of 126591 vertices processed 125000 of 126591 vertices processed 0 of 126591 vertices processed 25000 of 126591 vertices processed 50000 of 126591 vertices processed 75000 of 126591 vertices processed 100000 of 126591 vertices processed 125000 of 126591 vertices processed thickness calculation complete, 111:661 truncations. 50482 vertices at 0 distance 103915 vertices at 1 distance 66755 vertices at 2 distance 21935 vertices at 3 distance 6766 vertices at 4 distance 2019 vertices at 5 distance 665 vertices at 6 distance 240 vertices at 7 distance 117 vertices at 8 distance 58 vertices at 9 distance 35 vertices at 10 distance 30 vertices at 11 distance 28 vertices at 12 distance 26 vertices at 13 distance 20 vertices at 14 distance 13 vertices at 15 distance 15 vertices at 16 distance 15 vertices at 17 distance 25 vertices at 18 distance 9 vertices at 19 distance 14 vertices at 20 distance writing curvature file ../surf/rh.thickness type -1 #@# area and vertex vol rh Fri Nov 7 03:49:04 CST 2025 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12372 mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12364 mris_convert --volume sub-08YFFYY2_ses-00A rh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.volume mris_convert --volume sub-08YFFYY2_ses-00A rh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.volume masking with /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Total face volume 252614 Total vertex volume 252450 (mask=0) #@# sub-08YFFYY2_ses-00A rh 252450 vertexvol Done #----------------------------------------- #@# Curvature Stats lh Fri Nov 7 03:49:05 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm sub-08YFFYY2_ses-00A lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-08YFFYY2_ses-00A/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 227 ] Gb_filter = 0 WARN: S lookup min: -0.040254 WARN: S explicit min: 0.000000 vertex = 588 #----------------------------------------- #@# Curvature Stats rh Fri Nov 7 03:49:06 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm sub-08YFFYY2_ses-00A rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-08YFFYY2_ses-00A/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 224 ] Gb_filter = 0 WARN: S lookup min: -0.065902 WARN: S explicit min: 0.000000 vertex = 411 #-------------------------------------------- #@# Cortical ribbon mask Fri Nov 7 03:49:07 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon sub-08YFFYY2_ses-00A SUBJECTS_DIR is /scratch/juno/dal247378/batches/batch_017 loading input data... Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/aseg.presurf.mgz Running hemis serially Processing left hemi computing distance to left white surface computing distance to left pial surface Processing right hemi computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 424 writing volume /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/ribbon.mgz mris_volmask took 3.17 minutes writing ribbon files #----------------------------------------- #@# Cortical Parc 2 lh Fri Nov 7 03:52:18 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-08YFFYY2_ses-00A lh ../surf/lh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 3.0 using min determinant for regularization = 0.088 0 singular and 0 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 76 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 50 labels changed using aseg relabeling using gibbs priors... 000: 8649 changed, 127731 examined... 001: 1992 changed, 33744 examined... 002: 595 changed, 10593 examined... 003: 258 changed, 3347 examined... 004: 139 changed, 1535 examined... 005: 69 changed, 795 examined... 006: 39 changed, 394 examined... 007: 15 changed, 218 examined... 008: 8 changed, 94 examined... 009: 4 changed, 47 examined... 010: 1 changed, 30 examined... 011: 0 changed, 8 examined... 35 labels changed using aseg 000: 243 total segments, 159 labels (1931 vertices) changed 001: 91 total segments, 8 labels (36 vertices) changed 002: 83 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 31 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... relabeling unknown label... 1157 vertices marked for relabeling... 1157 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 8 seconds. #----------------------------------------- #@# Cortical Parc 2 rh Fri Nov 7 03:52:26 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-08YFFYY2_ses-00A rh ../surf/rh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.021 0 singular and 0 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 76 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 8 labels changed using aseg relabeling using gibbs priors... 000: 8753 changed, 126591 examined... 001: 1933 changed, 34149 examined... 002: 578 changed, 10331 examined... 003: 226 changed, 3325 examined... 004: 110 changed, 1354 examined... 005: 54 changed, 634 examined... 006: 33 changed, 314 examined... 007: 13 changed, 183 examined... 008: 9 changed, 76 examined... 009: 7 changed, 46 examined... 010: 3 changed, 38 examined... 011: 0 changed, 19 examined... 4 labels changed using aseg 000: 199 total segments, 109 labels (1234 vertices) changed 001: 93 total segments, 6 labels (38 vertices) changed 002: 87 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 26 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... relabeling unknown label... 907 vertices marked for relabeling... 907 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 8 seconds. #----------------------------------------- #@# Cortical Parc 3 lh Fri Nov 7 03:52:34 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-08YFFYY2_ses-00A lh ../surf/lh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 383 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1406 labels changed using aseg relabeling using gibbs priors... 000: 1818 changed, 127731 examined... 001: 405 changed, 8483 examined... 002: 116 changed, 2254 examined... 003: 53 changed, 686 examined... 004: 31 changed, 291 examined... 005: 12 changed, 188 examined... 006: 8 changed, 76 examined... 007: 2 changed, 36 examined... 008: 1 changed, 14 examined... 009: 1 changed, 7 examined... 010: 0 changed, 7 examined... 222 labels changed using aseg 000: 42 total segments, 9 labels (55 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 4 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 911 vertices marked for relabeling... 911 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas.annot... classification took 0 minutes and 6 seconds. #----------------------------------------- #@# Cortical Parc 3 rh Fri Nov 7 03:52:39 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-08YFFYY2_ses-00A rh ../surf/rh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.009 0 singular and 325 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1522 labels changed using aseg relabeling using gibbs priors... 000: 1914 changed, 126591 examined... 001: 402 changed, 8939 examined... 002: 117 changed, 2329 examined... 003: 50 changed, 658 examined... 004: 29 changed, 292 examined... 005: 16 changed, 170 examined... 006: 7 changed, 84 examined... 007: 9 changed, 44 examined... 008: 5 changed, 44 examined... 009: 4 changed, 32 examined... 010: 2 changed, 24 examined... 011: 1 changed, 10 examined... 012: 2 changed, 7 examined... 013: 4 changed, 13 examined... 014: 5 changed, 19 examined... 015: 3 changed, 25 examined... 016: 2 changed, 20 examined... 017: 2 changed, 14 examined... 018: 1 changed, 11 examined... 019: 0 changed, 7 examined... 217 labels changed using aseg 000: 54 total segments, 21 labels (66 vertices) changed 001: 34 total segments, 1 labels (5 vertices) changed 002: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 5 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 799 vertices marked for relabeling... 799 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas.annot... classification took 0 minutes and 7 seconds. #----------------------------------------- #@# WM/GM Contrast lh Fri Nov 7 03:52:46 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts pctsurfcon --s sub-08YFFYY2_ses-00A --lh-only Log file is /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts/pctsurfcon.log Fri Nov 7 03:52:46 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/pctsurfcon pctsurfcon 8.0.0 Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222122/lh.wm.mgh --regheader sub-08YFFYY2_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 -1 1 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 73730 Masking with /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222122/lh.wm.mgh Dim: 127731 1 1 mri_vol2surf done mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222122/lh.gm.mgh --projfrac 0.3 --regheader sub-08YFFYY2_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Done reading source surface Reading thickness /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface Projecting 0.3 0.3 1 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 88936 Masking with /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222122/lh.gm.mgh Dim: 127731 1 1 mri_vol2surf done mri_concat /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222122/lh.wm.mgh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222122/lh.gm.mgh --paired-diff-norm --mul 100 --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.w-g.pct.mgh mri_segstats --in /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.w-g.pct.mgh --annot sub-08YFFYY2_ses-00A lh aparc --sum /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/lh.w-g.pct.stats --snr 8.0.0 cwd cmdline mri_segstats --in /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.w-g.pct.mgh --annot sub-08YFFYY2_ses-00A lh aparc --sum /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/lh.w-g.pct.stats --snr sysname Linux hostname c-03-06 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.aparc.annot Seg base 1000 MRISannot2seg(): nhits = 119561 Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.w-g.pct.mgh Vertex Area is 0.686459 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up #----------------------------------------- #@# WM/GM Contrast rh Fri Nov 7 03:52:49 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts pctsurfcon --s sub-08YFFYY2_ses-00A --rh-only Log file is /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts/pctsurfcon.log Fri Nov 7 03:52:49 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 cd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/pctsurfcon pctsurfcon 8.0.0 Linux c-03-06 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222181/rh.wm.mgh --regheader sub-08YFFYY2_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 -1 1 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 73641 Masking with /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222181/rh.wm.mgh Dim: 126591 1 1 mri_vol2surf done mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222181/rh.gm.mgh --projfrac 0.3 --regheader sub-08YFFYY2_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Done reading source surface Reading thickness /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface Projecting 0.3 0.3 1 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 88550 Masking with /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222181/rh.gm.mgh Dim: 126591 1 1 mri_vol2surf done mri_concat /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222181/rh.wm.mgh /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/tmp.pctsurfcon.1222181/rh.gm.mgh --paired-diff-norm --mul 100 --o /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.w-g.pct.mgh mri_segstats --in /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.w-g.pct.mgh --annot sub-08YFFYY2_ses-00A rh aparc --sum /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/rh.w-g.pct.stats --snr 8.0.0 cwd cmdline mri_segstats --in /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.w-g.pct.mgh --annot sub-08YFFYY2_ses-00A rh aparc --sum /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/rh.w-g.pct.stats --snr sysname Linux hostname c-03-06 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.aparc.annot Seg base 2000 MRISannot2seg(): nhits = 118005 Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.w-g.pct.mgh Vertex Area is 0.693895 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up #----------------------------------------- #@# Relabel Hypointensities Fri Nov 7 03:52:51 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz reading input surface ../surf/lh.white... relabeling lh hypointensities... 336 voxels changed to hypointensity... reading input surface ../surf/rh.white... relabeling rh hypointensities... 446 voxels changed to hypointensity... 780 hypointense voxels neighboring cortex changed #----------------------------------------- #@# APas-to-ASeg Fri Nov 7 03:53:00 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_surf2volseg --o aseg.mgz --i aseg.presurf.hypos.mgz --fix-presurf-with-ribbon /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/ribbon.mgz --threads 1 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial --rh-cortex-mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 outvol aseg.mgz 64 avail.processors, using 1 Loading aseg.presurf.hypos.mgz Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri/ribbon.mgz Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 0 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 876720 mri_surf2volseg done mri_brainvol_stats --subject sub-08YFFYY2_ses-00A ComputeBrainVolumeStats2 VoxelVol=1, KeepCSF=1 #CBVS2 MaskVol 1388962.0 #CBVS2 BrainSegVol 1322510.0 #CBVS2 BrainSegVolNotVent 1058381.0 #CBVS2 SupraTentVol 1198467.0 #CBVS2 SupraTentVolNotVent 934338.0 #CBVS2 lhWhiteVol 220430.6 #CBVS2 lhPialVol 477493.6 #CBVS2 lhCtxGM 257063.0 #CBVS2 rhWhiteVol 219087.1 #CBVS2 rhPialVol 471810.9 #CBVS2 rhCtxGM 252723.8 #CBVS2 lhCerebralWM 191276.5 #CBVS2 rhCerebralWM 189633.5 #CBVS2 SubCortGMVol 61829.0 #CBVS2 CerebellumVol 124043.0 #CBVS2 CerebellumGMVol 102533.0 #CBVS2 VentChorVol 9385.0 #CBVS2 3rd4th5thCSF 254744.0 #CBVS2 AllCSF 264129.0 #CBVS2 CCVol 3443.0 #----------------------------------------- #@# AParc-to-ASeg aparc Fri Nov 7 03:53:06 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_surf2volseg --o aparc+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.aparc.annot 1000 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.aparc.annot 2000 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 outvol aparc+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8170 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.aparc.annot Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8586 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 26154 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 857860 mri_surf2volseg done #----------------------------------------- #@# AParc-to-ASeg aparc.a2009s Fri Nov 7 03:54:17 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_surf2volseg --o aparc.a2009s+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.aparc.a2009s.annot 11100 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.aparc.a2009s.annot 12100 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 outvol aparc.a2009s+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8170 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.aparc.a2009s.annot Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8586 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.aparc.a2009s.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 26154 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 857928 mri_surf2volseg done #----------------------------------------- #@# AParc-to-ASeg aparc.DKTatlas Fri Nov 7 03:55:41 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_surf2volseg --o aparc.DKTatlas+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.aparc.DKTatlas.annot 1000 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.aparc.DKTatlas.annot 2000 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 outvol aparc.DKTatlas+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8170 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.aparc.DKTatlas.annot Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8586 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.aparc.DKTatlas.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 26154 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 857856 mri_surf2volseg done #----------------------------------------- #@# WMParc Fri Nov 7 03:56:48 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/mri mri_surf2volseg --o wmparc.mgz --label-wm --i aparc+aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.aparc.annot 3000 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.aparc.annot 4000 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 outvol wmparc.mgz 64 avail.processors, using 1 Loading aparc+aseg.mgz Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8170 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.aparc.annot Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8586 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 3776 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 857860 mri_surf2volseg done mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-08YFFYY2_ses-00A --surf-wm-vol --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/WMParcStatsLUT.txt --etiv --stiv /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/synthseg.tiv.dat setting seed for random number genererator to 1234 8.0.0 cwd cmdline mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-08YFFYY2_ses-00A --surf-wm-vol --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/WMParcStatsLUT.txt --etiv --stiv /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/synthseg.tiv.dat sysname Linux hostname c-03-06 machine x86_64 user dal247378 whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation Reporting on 70 segmentations Using PrintSegStat mri_segstats done #----------------------------------------- #@# Parcellation Stats lh Fri Nov 7 04:00:37 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-08YFFYY2_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 256927 Total vertex volume 256759 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 1679 1114 3137 2.913 0.433 0.104 0.018 10 1.4 bankssts 707 466 1474 2.802 0.595 0.125 0.028 11 0.9 caudalanteriorcingulate 3406 2341 7511 2.786 0.544 0.109 0.021 30 2.9 caudalmiddlefrontal 1760 1385 3059 2.093 0.440 0.175 0.052 50 3.5 cuneus 843 525 1711 2.687 0.810 0.104 0.032 7 1.1 entorhinal 4320 2949 9474 2.803 0.574 0.126 0.028 55 4.6 fusiform 7975 5574 17527 2.752 0.539 0.119 0.024 97 7.4 inferiorparietal 4257 2967 10814 2.986 0.663 0.107 0.020 41 3.5 inferiortemporal 1250 912 2445 2.352 0.735 0.134 0.035 20 1.6 isthmuscingulate 7377 4950 13493 2.389 0.498 0.131 0.032 100 8.6 lateraloccipital 3331 2382 7746 2.886 0.651 0.129 0.030 41 3.8 lateralorbitofrontal 3544 2586 6099 2.225 0.515 0.144 0.037 49 5.5 lingual 2335 1706 5226 2.636 0.779 0.131 0.033 50 3.5 medialorbitofrontal 4640 3112 12396 3.101 0.638 0.113 0.023 56 4.2 middletemporal 1055 678 2207 2.762 0.611 0.107 0.027 12 0.9 parahippocampal 2107 1367 4306 2.728 0.647 0.106 0.023 15 1.9 paracentral 2135 1484 4695 2.780 0.396 0.095 0.019 19 1.5 parsopercularis 882 603 2257 2.768 0.667 0.114 0.022 9 0.9 parsorbitalis 1691 1131 3723 2.713 0.570 0.103 0.020 16 1.3 parstriangularis 1743 1351 2257 1.853 0.450 0.168 0.045 27 3.6 pericalcarine 6252 4223 11159 2.286 0.704 0.113 0.023 63 6.0 postcentral 1493 1084 2869 2.405 0.763 0.133 0.028 25 1.7 posteriorcingulate 7065 4655 14210 2.718 0.552 0.105 0.022 52 6.2 precentral 5235 3623 10660 2.628 0.499 0.121 0.026 61 5.6 precuneus 884 646 2223 2.950 0.750 0.142 0.041 15 1.4 rostralanteriorcingulate 8473 6092 18497 2.566 0.567 0.125 0.028 119 9.3 rostralmiddlefrontal 10574 7464 25792 2.916 0.603 0.117 0.026 110 10.8 superiorfrontal 7626 5167 14501 2.477 0.544 0.117 0.024 77 7.5 superiorparietal 5459 3524 13302 3.099 0.634 0.095 0.019 43 4.1 superiortemporal 4810 3280 10863 2.873 0.559 0.111 0.021 48 4.2 supramarginal 364 294 1217 2.872 0.664 0.163 0.037 7 0.6 frontalpole 501 405 2099 3.577 0.840 0.152 0.043 7 0.9 temporalpole 582 398 1070 2.731 0.320 0.149 0.028 7 0.7 transversetemporal 3206 2195 6740 2.906 1.007 0.123 0.036 40 4.6 insula mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-08YFFYY2_ses-00A lh pial computing statistics for each annotation in ../label/lh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 256927 Total vertex volume 256759 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 1679 1026 3137 2.913 0.433 0.121 0.037 38 2.3 bankssts 707 590 1474 2.802 0.595 0.168 0.055 19 1.4 caudalanteriorcingulate 3406 2892 7511 2.786 0.544 0.140 0.035 53 4.7 caudalmiddlefrontal 1760 1679 3059 2.093 0.440 0.178 0.044 50 3.3 cuneus 843 828 1711 2.687 0.810 0.222 0.075 29 3.2 entorhinal 4320 3733 9474 2.803 0.574 0.163 0.050 106 8.2 fusiform 7975 6983 17527 2.752 0.539 0.152 0.038 142 11.8 inferiorparietal 4257 4054 10814 2.986 0.663 0.168 0.043 112 7.7 inferiortemporal 1250 1221 2445 2.352 0.735 0.215 0.070 45 3.2 isthmuscingulate 7377 6323 13493 2.389 0.498 0.157 0.042 2548 11.7 lateraloccipital 3331 2889 7746 2.886 0.651 0.164 0.048 88 6.0 lateralorbitofrontal 3544 3187 6099 2.225 0.515 0.169 0.058 103 6.0 lingual 2335 2345 5226 2.636 0.779 0.200 0.058 79 6.1 medialorbitofrontal 4640 4699 12396 3.101 0.638 0.162 0.038 84 7.6 middletemporal 1055 948 2207 2.762 0.611 0.192 0.056 17 2.6 parahippocampal 2107 1779 4306 2.728 0.647 0.144 0.040 28 3.2 paracentral 2135 1880 4695 2.780 0.396 0.147 0.035 28 3.1 parsopercularis 882 950 2257 2.768 0.667 0.164 0.035 16 1.2 parsorbitalis 1691 1546 3723 2.713 0.570 0.150 0.032 20 2.4 parstriangularis 1743 1127 2257 1.853 0.450 0.140 0.040 33 2.8 pericalcarine 6252 5512 11159 2.286 0.704 0.147 0.033 107 8.8 postcentral 1493 1317 2869 2.405 0.763 0.185 0.061 67 3.2 posteriorcingulate 7065 5560 14210 2.718 0.552 0.124 0.030 111 8.3 precentral 5235 4434 10660 2.628 0.499 0.160 0.045 141 9.5 precuneus 884 851 2223 2.950 0.750 0.211 0.077 26 3.0 rostralanteriorcingulate 8473 7885 18497 2.566 0.567 0.166 0.038 145 13.0 rostralmiddlefrontal 10574 9779 25792 2.916 0.603 0.161 0.042 226 17.0 superiorfrontal 7626 6305 14501 2.477 0.544 0.148 0.038 128 11.5 superiorparietal 5459 4805 13302 3.099 0.634 0.142 0.035 77 7.8 superiortemporal 4810 4166 10863 2.873 0.559 0.150 0.038 73 7.2 supramarginal 364 543 1217 2.872 0.664 0.261 0.053 8 0.9 frontalpole 501 713 2099 3.577 0.840 0.243 0.061 10 1.3 temporalpole 582 404 1070 2.731 0.320 0.129 0.042 11 0.9 transversetemporal 3206 2354 6740 2.906 1.007 0.167 0.055 96 7.5 insula mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats rh Fri Nov 7 04:00:48 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-08YFFYY2_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 252614 Total vertex volume 252450 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 1600 1053 2776 2.780 0.382 0.090 0.015 9 1.1 bankssts 994 752 2291 2.639 0.649 0.130 0.028 14 1.2 caudalanteriorcingulate 2873 1960 6480 2.834 0.556 0.103 0.021 23 2.3 caudalmiddlefrontal 1910 1314 2877 2.016 0.427 0.139 0.036 26 2.6 cuneus 665 443 1543 2.825 0.931 0.122 0.035 5 1.0 entorhinal 3549 2521 8190 2.825 0.570 0.129 0.030 45 4.1 fusiform 8232 5757 17979 2.758 0.495 0.112 0.023 96 7.6 inferiorparietal 3798 2775 9663 2.851 0.663 0.119 0.025 50 3.8 inferiortemporal 1322 967 2917 2.529 0.844 0.133 0.033 23 1.2 isthmuscingulate 7135 4941 13513 2.421 0.525 0.136 0.033 104 9.0 lateraloccipital 3338 2345 7318 2.811 0.797 0.125 0.033 39 4.3 lateralorbitofrontal 4037 2924 6864 2.176 0.580 0.143 0.038 58 6.2 lingual 2379 1790 5065 2.471 0.619 0.125 0.033 43 2.7 medialorbitofrontal 4662 3367 12929 3.137 0.633 0.121 0.026 64 4.7 middletemporal 911 600 2092 2.892 0.708 0.117 0.029 15 0.9 parahippocampal 2176 1411 4025 2.623 0.555 0.097 0.020 13 1.7 paracentral 2081 1416 4710 2.895 0.458 0.104 0.021 18 1.8 parsopercularis 1173 884 3086 2.823 0.579 0.137 0.032 16 1.3 parsorbitalis 2176 1530 5090 2.792 0.541 0.120 0.025 25 2.2 parstriangularis 1971 1461 2606 2.000 0.432 0.135 0.033 22 2.7 pericalcarine 5846 3931 9474 2.179 0.643 0.110 0.022 58 5.1 postcentral 1651 1214 3389 2.521 0.808 0.124 0.026 19 2.0 posteriorcingulate 7128 4779 14594 2.732 0.537 0.107 0.022 56 6.5 precentral 5226 3698 10602 2.596 0.592 0.122 0.026 63 5.7 precuneus 783 571 2038 2.933 0.679 0.127 0.034 15 0.9 rostralanteriorcingulate 7848 5708 17146 2.537 0.544 0.127 0.029 113 8.8 rostralmiddlefrontal 9762 6892 23477 2.864 0.615 0.115 0.025 92 9.5 superiorfrontal 7831 5281 14928 2.504 0.476 0.114 0.023 85 6.8 superiorparietal 5346 3512 12358 2.948 0.581 0.096 0.019 40 4.0 superiortemporal 5081 3529 11429 2.810 0.537 0.109 0.022 51 4.4 supramarginal 459 336 1362 2.857 0.509 0.162 0.037 15 0.6 frontalpole 556 427 2093 3.262 1.013 0.146 0.052 9 0.9 temporalpole 507 327 963 2.628 0.339 0.122 0.023 5 0.4 transversetemporal 2999 2104 6585 3.054 0.814 0.125 0.033 41 4.1 insula mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-08YFFYY2_ses-00A rh pial computing statistics for each annotation in ../label/rh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 252614 Total vertex volume 252450 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 1600 952 2776 2.780 0.382 0.116 0.036 26 2.2 bankssts 994 993 2291 2.639 0.649 0.199 0.057 34 2.5 caudalanteriorcingulate 2873 2496 6480 2.834 0.556 0.144 0.035 55 4.0 caudalmiddlefrontal 1910 1658 2877 2.016 0.427 0.154 0.043 44 3.1 cuneus 665 721 1543 2.825 0.931 0.283 0.118 37 3.0 entorhinal 3549 3158 8190 2.825 0.570 0.169 0.047 102 6.3 fusiform 8232 7123 17979 2.758 0.495 0.148 0.037 143 12.2 inferiorparietal 3798 3853 9663 2.851 0.663 0.181 0.046 113 7.0 inferiortemporal 1322 1337 2917 2.529 0.844 0.204 0.059 37 3.2 isthmuscingulate 7135 6326 13513 2.421 0.525 0.153 0.040 126 11.5 lateraloccipital 3338 2839 7318 2.811 0.797 0.166 0.048 66 6.3 lateralorbitofrontal 4037 3607 6864 2.176 0.580 0.161 0.045 74 7.3 lingual 2379 2366 5065 2.471 0.619 0.177 0.044 128 4.5 medialorbitofrontal 4662 4767 12929 3.137 0.633 0.174 0.043 100 8.1 middletemporal 911 843 2092 2.892 0.708 0.203 0.061 24 2.2 parahippocampal 2176 1609 4025 2.623 0.555 0.125 0.033 33 3.0 paracentral 2081 1832 4710 2.895 0.458 0.143 0.034 33 2.9 parsopercularis 1173 1275 3086 2.823 0.579 0.193 0.044 26 2.1 parsorbitalis 2176 2038 5090 2.792 0.541 0.160 0.040 32 3.3 parstriangularis 1971 1273 2606 2.000 0.432 0.125 0.037 36 2.7 pericalcarine 5846 4825 9474 2.179 0.643 0.137 0.031 108 7.9 postcentral 1651 1515 3389 2.521 0.808 0.181 0.056 77 3.5 posteriorcingulate 7128 5707 14594 2.732 0.537 0.127 0.030 103 8.8 precentral 5226 4382 10602 2.596 0.592 0.154 0.041 100 8.5 precuneus 783 792 2038 2.933 0.679 0.190 0.055 21 1.4 rostralanteriorcingulate 7848 7563 17146 2.537 0.544 0.167 0.039 143 12.3 rostralmiddlefrontal 9762 9019 23477 2.864 0.615 0.156 0.040 164 14.7 superiorfrontal 7831 6553 14928 2.504 0.476 0.145 0.037 136 11.8 superiorparietal 5346 4725 12358 2.948 0.581 0.149 0.037 110 8.3 superiortemporal 5081 4458 11429 2.810 0.537 0.146 0.036 97 7.1 supramarginal 459 625 1362 2.857 0.509 0.230 0.049 10 0.9 frontalpole 556 790 2093 3.262 1.013 0.241 0.056 14 1.2 temporalpole 507 427 963 2.628 0.339 0.138 0.041 4 0.9 transversetemporal 2999 2085 6585 3.054 0.814 0.169 0.061 122 6.5 insula mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 2 lh Fri Nov 7 04:00:58 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-08YFFYY2_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 256927 Total vertex volume 256759 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 1294 947 2842 2.583 0.636 0.132 0.028 15 1.6 G_and_S_frontomargin 1614 1160 3540 2.521 0.497 0.132 0.029 21 1.7 G_and_S_occipital_inf 1802 1179 3756 2.586 0.627 0.111 0.027 17 1.8 G_and_S_paracentral 1175 828 2993 3.001 0.516 0.119 0.025 16 1.1 G_and_S_subcentral 664 502 1935 2.748 0.529 0.132 0.034 11 0.7 G_and_S_transv_frontopol 2027 1484 4921 2.991 0.580 0.129 0.033 24 3.1 G_and_S_cingul-Ant 1024 700 2037 2.893 0.409 0.102 0.019 6 0.8 G_and_S_cingul-Mid-Ant 1156 793 2241 2.695 0.515 0.108 0.020 11 0.9 G_and_S_cingul-Mid-Post 499 404 1506 2.867 0.694 0.163 0.044 10 0.7 G_cingul-Post-dorsal 278 194 650 2.613 0.666 0.135 0.035 5 0.4 G_cingul-Post-ventral 1609 1309 3008 2.077 0.554 0.189 0.058 50 3.7 G_cuneus 1062 762 3006 2.920 0.415 0.118 0.025 15 1.0 G_front_inf-Opercular 364 246 1204 3.226 0.367 0.124 0.028 5 0.4 G_front_inf-Orbital 1081 748 2981 2.940 0.509 0.119 0.024 14 1.1 G_front_inf-Triangul 4920 3540 13754 2.851 0.609 0.131 0.029 85 5.3 G_front_middle 6974 4978 19415 3.056 0.649 0.125 0.029 90 7.6 G_front_sup 582 444 1552 3.017 0.912 0.151 0.048 11 1.0 G_Ins_lg_and_S_cent_ins 626 454 2382 3.806 0.745 0.124 0.032 9 0.8 G_insular_short 2221 1482 5667 2.834 0.487 0.132 0.032 38 2.6 G_occipital_middle 1294 822 2408 2.339 0.439 0.121 0.030 15 1.4 G_occipital_sup 1896 1238 4508 2.881 0.457 0.130 0.032 31 2.1 G_oc-temp_lat-fusifor 2353 1735 4588 2.241 0.570 0.162 0.048 44 4.7 G_oc-temp_med-Lingual 1486 903 3088 2.670 0.850 0.106 0.034 17 1.7 G_oc-temp_med-Parahip 1839 1313 5546 3.136 0.655 0.127 0.032 28 2.0 G_orbital 2855 2102 8306 2.927 0.582 0.130 0.028 51 2.8 G_pariet_inf-Angular 2504 1743 7121 3.149 0.543 0.134 0.029 39 2.9 G_pariet_inf-Supramar 2720 1895 6779 2.729 0.564 0.130 0.029 38 3.0 G_parietal_sup 2460 1640 5233 2.497 0.592 0.127 0.028 32 2.8 G_postcentral 2728 1779 6933 2.918 0.599 0.113 0.027 26 2.8 G_precentral 2539 1833 7112 2.878 0.485 0.140 0.032 46 3.2 G_precuneus 974 750 2724 2.749 0.630 0.155 0.045 35 1.8 G_rectus 736 459 849 1.798 0.782 0.131 0.060 14 1.8 G_subcallosal 478 311 986 2.782 0.331 0.138 0.027 6 0.5 G_temp_sup-G_T_transv 1905 1243 6728 3.523 0.594 0.122 0.029 29 1.9 G_temp_sup-Lateral 586 398 1439 3.275 0.876 0.104 0.027 3 0.7 G_temp_sup-Plan_polar 752 511 1572 2.710 0.462 0.082 0.012 3 0.4 G_temp_sup-Plan_tempo 2023 1444 6705 3.268 0.603 0.119 0.025 29 1.8 G_temporal_inf 2614 1763 8931 3.345 0.635 0.126 0.027 43 2.7 G_temporal_middle 342 219 408 2.182 0.328 0.086 0.012 1 0.2 Lat_Fis-ant-Horizont 307 200 555 2.923 0.304 0.067 0.012 1 0.1 Lat_Fis-ant-Vertical 930 600 1225 2.471 0.410 0.088 0.014 3 0.6 Lat_Fis-post 1967 1288 3063 2.157 0.471 0.145 0.040 34 2.7 Pole_occipital 1265 1005 5072 3.599 0.713 0.145 0.037 19 1.9 Pole_temporal 1888 1450 2445 1.952 0.504 0.153 0.037 25 3.3 S_calcarine 3322 2249 4021 2.025 0.570 0.098 0.018 15 2.7 S_central 1075 721 1542 2.354 0.390 0.103 0.020 7 0.9 S_cingul-Marginalis 389 262 670 2.844 0.541 0.088 0.016 1 0.3 S_circular_insula_ant 1440 943 2290 3.060 0.702 0.083 0.016 5 1.0 S_circular_insula_inf 1464 937 2105 2.651 0.402 0.096 0.019 7 1.3 S_circular_insula_sup 958 653 1619 2.726 0.513 0.103 0.017 6 0.7 S_collat_transv_ant 515 376 856 2.316 0.408 0.151 0.029 7 0.7 S_collat_transv_post 2176 1487 3446 2.416 0.370 0.098 0.018 15 1.7 S_front_inf 1660 1204 2811 2.321 0.435 0.120 0.030 20 2.0 S_front_middle 3163 2165 5574 2.592 0.437 0.105 0.020 22 2.7 S_front_sup 181 131 380 3.024 0.398 0.105 0.020 1 0.2 S_interm_prim-Jensen 3537 2343 5234 2.407 0.456 0.104 0.019 24 2.8 S_intrapariet_and_P_trans 987 681 1292 2.186 0.322 0.114 0.021 6 0.9 S_oc_middle_and_Lunatus 1533 1024 2208 2.308 0.360 0.102 0.018 9 1.2 S_oc_sup_and_transversal 801 540 1138 2.477 0.326 0.103 0.020 6 0.7 S_occipital_ant 838 553 1496 2.637 0.516 0.088 0.017 4 0.5 S_oc-temp_lat 2083 1444 3158 2.454 0.410 0.114 0.022 15 2.0 S_oc-temp_med_and_Lingual 327 233 450 2.067 0.478 0.117 0.028 2 0.4 S_orbital_lateral 468 339 833 2.592 0.762 0.126 0.023 4 0.4 S_orbital_med-olfact 1496 1082 2824 2.617 0.537 0.130 0.028 16 1.7 S_orbital-H_Shaped 1828 1215 2532 2.279 0.401 0.107 0.019 12 1.5 S_parieto_occipital 1050 694 1019 1.732 0.551 0.125 0.030 22 1.4 S_pericallosal 2820 1852 3969 2.341 0.464 0.097 0.017 15 2.1 S_postcentral 1347 896 2115 2.655 0.306 0.093 0.016 7 0.9 S_precentral-inf-part 1327 881 2184 2.558 0.427 0.092 0.015 6 0.9 S_precentral-sup-part 479 341 831 2.638 0.918 0.124 0.018 3 0.4 S_suborbital 1085 746 1724 2.572 0.477 0.117 0.023 9 1.1 S_subparietal 1799 1197 2600 2.572 0.405 0.105 0.018 11 1.5 S_temporal_inf 6641 4402 11523 2.776 0.458 0.100 0.017 41 5.0 S_temporal_sup 359 246 599 2.761 0.363 0.096 0.015 2 0.3 S_temporal_transverse mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 2 rh Fri Nov 7 04:01:03 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-08YFFYY2_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 252614 Total vertex volume 252450 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 990 732 2181 2.461 0.578 0.134 0.029 15 1.2 G_and_S_frontomargin 942 672 2194 2.680 0.560 0.127 0.028 16 0.9 G_and_S_occipital_inf 1354 897 2660 2.433 0.529 0.110 0.030 14 1.3 G_and_S_paracentral 1284 923 2974 2.920 0.419 0.133 0.026 17 1.3 G_and_S_subcentral 1012 803 2581 2.541 0.576 0.145 0.033 25 1.4 G_and_S_transv_frontopol 2679 1961 5720 2.705 0.598 0.115 0.026 31 2.7 G_and_S_cingul-Ant 1344 953 2859 2.780 0.465 0.107 0.021 11 1.1 G_and_S_cingul-Mid-Ant 1332 928 2722 2.733 0.484 0.112 0.024 10 1.3 G_and_S_cingul-Mid-Post 497 354 1540 3.156 0.627 0.150 0.036 11 0.6 G_cingul-Post-dorsal 291 198 895 2.991 0.692 0.131 0.037 5 0.2 G_cingul-Post-ventral 1851 1257 2734 1.958 0.422 0.148 0.043 30 2.9 G_cuneus 1255 913 3875 3.053 0.411 0.126 0.029 18 1.4 G_front_inf-Opercular 452 305 1290 3.073 0.386 0.135 0.031 8 0.5 G_front_inf-Orbital 832 600 2503 3.029 0.509 0.128 0.030 12 0.9 G_front_inf-Triangul 3365 2537 10429 2.921 0.559 0.142 0.036 68 4.3 G_front_middle 6320 4534 18261 3.062 0.609 0.127 0.030 80 7.2 G_front_sup 544 421 1454 3.325 0.791 0.147 0.041 8 0.9 G_Ins_lg_and_S_cent_ins 700 524 2122 3.052 1.182 0.154 0.052 22 1.5 G_insular_short 2455 1779 6295 2.724 0.507 0.140 0.033 49 3.1 G_occipital_middle 1445 847 2658 2.431 0.449 0.103 0.024 17 1.1 G_occipital_sup 1496 1019 3986 2.927 0.530 0.131 0.031 26 1.6 G_oc-temp_lat-fusifor 2657 1950 4981 2.188 0.621 0.146 0.041 43 4.2 G_oc-temp_med-Lingual 1353 883 3431 2.876 1.006 0.126 0.037 21 1.8 G_oc-temp_med-Parahip 2357 1731 7228 3.130 0.678 0.137 0.038 40 3.1 G_orbital 2720 2025 8575 3.062 0.505 0.131 0.030 52 2.8 G_pariet_inf-Angular 2260 1657 6383 3.009 0.523 0.126 0.028 35 2.4 G_pariet_inf-Supramar 2524 1736 6353 2.701 0.522 0.128 0.027 39 2.6 G_parietal_sup 1966 1282 3590 2.220 0.561 0.111 0.025 24 1.8 G_postcentral 2727 1811 7471 2.959 0.548 0.116 0.027 31 2.7 G_precentral 2321 1680 6193 2.801 0.587 0.138 0.033 47 2.8 G_precuneus 667 531 1828 2.618 0.582 0.147 0.054 23 0.9 G_rectus 360 222 470 1.957 0.738 0.099 0.041 4 0.5 G_subcallosal 351 219 734 2.639 0.322 0.126 0.024 5 0.3 G_temp_sup-G_T_transv 1817 1176 5662 3.239 0.612 0.123 0.030 25 2.0 G_temp_sup-Lateral 740 493 1660 3.029 0.686 0.087 0.019 3 0.6 G_temp_sup-Plan_polar 768 529 1497 2.564 0.433 0.086 0.013 3 0.5 G_temp_sup-Plan_tempo 1831 1397 5375 2.888 0.626 0.131 0.031 35 1.9 G_temporal_inf 2833 2137 9799 3.370 0.582 0.138 0.032 57 3.4 G_temporal_middle 279 191 434 2.418 0.410 0.086 0.010 1 0.2 Lat_Fis-ant-Horizont 390 261 580 2.517 0.386 0.090 0.017 1 0.2 Lat_Fis-ant-Vertical 1296 838 1792 2.562 0.414 0.092 0.016 5 0.9 Lat_Fis-post 2955 2118 4790 2.137 0.443 0.162 0.044 52 5.0 Pole_occipital 1283 1048 5530 3.562 0.784 0.152 0.046 20 2.2 Pole_temporal 1938 1465 2641 2.081 0.549 0.140 0.032 21 2.7 S_calcarine 2979 2016 3508 2.017 0.572 0.098 0.018 14 2.4 S_central 1308 879 1906 2.317 0.436 0.086 0.012 5 0.8 S_cingul-Marginalis 622 414 1040 3.020 0.694 0.109 0.023 3 0.7 S_circular_insula_ant 1283 837 1967 2.826 0.483 0.078 0.013 4 0.8 S_circular_insula_inf 1246 827 2023 2.885 0.427 0.106 0.022 7 1.3 S_circular_insula_sup 1010 717 1782 2.642 0.501 0.103 0.016 5 0.8 S_collat_transv_ant 337 237 526 2.402 0.454 0.133 0.029 3 0.5 S_collat_transv_post 2375 1612 3757 2.414 0.435 0.108 0.020 19 2.1 S_front_inf 2045 1404 3200 2.383 0.439 0.103 0.018 11 1.6 S_front_middle 2868 1963 4738 2.494 0.480 0.103 0.019 17 2.4 S_front_sup 560 385 1034 2.610 0.437 0.111 0.023 4 0.5 S_interm_prim-Jensen 3981 2652 5877 2.469 0.398 0.100 0.017 22 3.0 S_intrapariet_and_P_trans 1191 842 1554 2.185 0.397 0.124 0.027 9 1.4 S_oc_middle_and_Lunatus 1499 1008 2314 2.418 0.379 0.108 0.018 11 1.2 S_oc_sup_and_transversal 509 373 1030 2.509 0.365 0.123 0.022 5 0.6 S_occipital_ant 756 522 1196 2.597 0.512 0.108 0.021 5 0.7 S_oc-temp_lat 1887 1278 2918 2.512 0.404 0.102 0.020 11 1.6 S_oc-temp_med_and_Lingual 300 242 570 2.579 0.485 0.150 0.026 3 0.5 S_orbital_lateral 551 388 868 2.145 0.757 0.100 0.016 3 0.3 S_orbital_med-olfact 1436 1010 2669 2.617 0.545 0.118 0.026 13 1.6 S_orbital-H_Shaped 1866 1265 2828 2.499 0.508 0.112 0.019 11 1.7 S_parieto_occipital 1330 963 1416 1.769 0.536 0.117 0.025 17 1.2 S_pericallosal 2659 1763 4037 2.332 0.517 0.099 0.018 19 2.0 S_postcentral 1625 1044 2578 2.832 0.437 0.088 0.016 6 1.1 S_precentral-inf-part 1155 754 1818 2.730 0.461 0.083 0.014 4 0.7 S_precentral-sup-part 147 114 257 2.536 0.494 0.171 0.030 2 0.3 S_suborbital 1337 989 2508 2.517 0.658 0.125 0.026 13 1.5 S_subparietal 1300 870 1899 2.589 0.362 0.101 0.019 6 1.1 S_temporal_inf 6742 4419 11261 2.762 0.406 0.090 0.016 32 4.7 S_temporal_sup 268 192 438 2.589 0.359 0.112 0.017 2 0.2 S_temporal_transverse mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 3 lh Fri Nov 7 04:01:08 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-08YFFYY2_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 256927 Total vertex volume 256759 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 1359 897 2903 2.919 0.579 0.118 0.027 20 1.5 caudalanteriorcingulate 3638 2499 8062 2.783 0.552 0.109 0.021 33 3.1 caudalmiddlefrontal 2466 1862 4235 2.148 0.456 0.158 0.044 56 4.3 cuneus 802 488 1586 2.575 0.909 0.111 0.039 9 1.2 entorhinal 4150 2790 8239 2.700 0.497 0.122 0.027 49 4.1 fusiform 8059 5616 17687 2.740 0.543 0.118 0.023 96 7.4 inferiorparietal 4202 2976 11437 3.052 0.696 0.112 0.022 45 3.9 inferiortemporal 1270 919 2453 2.352 0.736 0.135 0.036 20 1.7 isthmuscingulate 7172 4829 13171 2.387 0.497 0.130 0.031 97 8.3 lateraloccipital 3747 2722 9097 2.874 0.717 0.135 0.033 52 4.6 lateralorbitofrontal 3629 2637 6269 2.227 0.523 0.143 0.036 50 5.6 lingual 2109 1509 4533 2.476 0.860 0.139 0.040 49 3.6 medialorbitofrontal 6217 4160 15175 3.015 0.614 0.111 0.022 67 5.5 middletemporal 1086 700 2286 2.784 0.603 0.106 0.027 11 1.0 parahippocampal 2446 1607 4957 2.737 0.630 0.108 0.023 19 2.3 paracentral 1901 1319 4241 2.810 0.385 0.098 0.020 18 1.4 parsopercularis 937 616 2115 2.767 0.570 0.108 0.020 8 0.9 parsorbitalis 2127 1436 4512 2.658 0.560 0.099 0.020 18 1.5 parstriangularis 1686 1305 2158 1.847 0.454 0.170 0.046 28 3.6 pericalcarine 6952 4685 12523 2.325 0.701 0.114 0.023 69 6.8 postcentral 1627 1167 3016 2.415 0.738 0.129 0.027 22 1.8 posteriorcingulate 7011 4616 14078 2.720 0.548 0.105 0.022 51 6.2 precentral 5139 3600 10914 2.650 0.504 0.124 0.027 63 5.6 precuneus 1330 972 3284 2.956 0.688 0.138 0.037 19 2.0 rostralanteriorcingulate 5807 4171 12373 2.527 0.527 0.124 0.027 79 6.4 rostralmiddlefrontal 11889 8506 29220 2.846 0.634 0.121 0.027 144 13.0 superiorfrontal 6284 4224 11717 2.474 0.536 0.114 0.023 60 5.8 superiorparietal 7082 4675 17450 3.105 0.657 0.102 0.022 58 6.0 superiortemporal 4411 3024 10092 2.887 0.566 0.114 0.022 47 3.9 supramarginal 590 404 1079 2.732 0.321 0.149 0.028 7 0.7 transversetemporal 2436 1701 5897 3.249 0.812 0.112 0.028 24 2.6 insula mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 3 rh Fri Nov 7 04:01:13 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-08YFFYY2_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 252614 Total vertex volume 252450 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 1076 817 2415 2.601 0.673 0.132 0.029 15 1.3 caudalanteriorcingulate 2984 2032 6761 2.846 0.549 0.104 0.021 24 2.4 caudalmiddlefrontal 2369 1619 3604 2.062 0.434 0.138 0.036 33 3.2 cuneus 629 408 1380 2.683 0.966 0.117 0.033 5 0.9 entorhinal 3155 2219 6985 2.831 0.535 0.125 0.028 37 3.4 fusiform 8223 5748 18038 2.755 0.500 0.112 0.023 96 7.5 inferiorparietal 4185 3077 10822 2.832 0.679 0.122 0.027 57 4.4 inferiortemporal 1278 931 2830 2.535 0.825 0.133 0.033 22 1.2 isthmuscingulate 7194 4977 13644 2.417 0.528 0.138 0.033 107 9.2 lateraloccipital 3719 2658 8446 2.793 0.779 0.132 0.035 60 5.2 lateralorbitofrontal 3996 2891 6801 2.174 0.583 0.141 0.038 57 6.0 lingual 1857 1351 4073 2.490 0.693 0.133 0.040 41 2.4 medialorbitofrontal 5773 4125 14919 3.078 0.605 0.119 0.025 73 5.7 middletemporal 955 633 2197 2.913 0.715 0.115 0.027 14 0.9 parahippocampal 2219 1434 4195 2.651 0.580 0.097 0.021 13 1.7 paracentral 2360 1602 5174 2.856 0.462 0.102 0.021 20 1.9 parsopercularis 1069 769 2660 2.822 0.556 0.119 0.025 10 1.1 parsorbitalis 2169 1539 5081 2.771 0.548 0.128 0.027 29 2.4 parstriangularis 1904 1405 2525 2.016 0.427 0.133 0.032 20 2.5 pericalcarine 6326 4279 10569 2.200 0.646 0.111 0.023 66 5.6 postcentral 1738 1267 3597 2.559 0.807 0.122 0.026 20 2.0 posteriorcingulate 6829 4584 14135 2.749 0.527 0.108 0.023 55 6.3 precentral 5321 3793 11106 2.614 0.597 0.125 0.027 67 5.9 precuneus 1078 800 2692 2.794 0.692 0.124 0.031 20 1.2 rostralanteriorcingulate 5287 3860 10973 2.489 0.503 0.126 0.028 72 5.7 rostralmiddlefrontal 12647 9022 30192 2.792 0.623 0.118 0.025 136 12.8 superiorfrontal 6649 4472 12542 2.511 0.466 0.110 0.021 65 5.5 superiorparietal 7005 4657 16170 2.920 0.642 0.100 0.022 55 6.2 superiortemporal 4903 3389 10768 2.799 0.541 0.108 0.022 47 4.3 supramarginal 504 324 950 2.636 0.334 0.120 0.023 5 0.4 transversetemporal 2604 1835 6205 3.252 0.654 0.119 0.028 25 3.0 insula mris_anatomical_stats done #-------------------------------------------- #@# ASeg Stats Fri Nov 7 04:01:18 CST 2025 /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --stiv /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/synthseg.tiv.dat --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/ASegStatsLUT.txt --subject sub-08YFFYY2_ses-00A setting seed for random number genererator to 1234 8.0.0 cwd cmdline mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --stiv /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/stats/synthseg.tiv.dat --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/ASegStatsLUT.txt --subject sub-08YFFYY2_ses-00A sysname Linux hostname c-03-06 machine x86_64 user dal247378 whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) Computing euler number orig.nofix lheno = -10, rheno = -18 orig.nofix lhholes = 6, rhholes = 10 Loading mri/aseg.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation Reporting on 45 segmentations Using PrintSegStat mri_segstats done /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label #-------------------------------------------- #@# BA_exvivo Labels lh Fri Nov 7 04:03:09 CST 2025 mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA1_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 193 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.label 4322 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA2_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 226 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.label 8135 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA3a_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA3a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 47 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.label 4124 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA3b_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA3b_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 152 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.label 6135 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA4a_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA4a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 135 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.label 5919 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA4p_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA4p_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 98 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.label 4168 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA6_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA6_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 463 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.label 14052 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA44_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA44_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 68 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.label 4249 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA45_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA45_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 262 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.label 3684 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.V1_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.V1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 834 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.label 5475 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.V2_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.V2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 1310 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.label 9424 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.MT_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.MT_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 339 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.label 2357 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.entorhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1290 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1290 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 108 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.label 1398 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.perirhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 58 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.label 1257 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.FG1.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.FG1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.FG1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 414 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 414 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 79 Checking for and removing duplicates Writing label file ./lh.FG1.mpm.vpnl.label 493 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.FG2.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.FG2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.FG2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 703 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 703 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 110 Checking for and removing duplicates Writing label file ./lh.FG2.mpm.vpnl.label 813 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.FG3.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.FG3.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.FG3.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1873 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1873 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 186 Checking for and removing duplicates Writing label file ./lh.FG3.mpm.vpnl.label 2059 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.FG4.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.FG4.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.FG4.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2101 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2101 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 217 Checking for and removing duplicates Writing label file ./lh.FG4.mpm.vpnl.label 2318 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.hOc1.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.hOc1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.hOc1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3877 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3877 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 621 Checking for and removing duplicates Writing label file ./lh.hOc1.mpm.vpnl.label 4498 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.hOc2.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.hOc2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.hOc2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2919 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2919 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 547 Checking for and removing duplicates Writing label file ./lh.hOc2.mpm.vpnl.label 3466 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.hOc3v.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.hOc3v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1286 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1286 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 223 Checking for and removing duplicates Writing label file ./lh.hOc3v.mpm.vpnl.label 1509 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.hOc4v.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.hOc4v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1006 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1006 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 192 Checking for and removing duplicates Writing label file ./lh.hOc4v.mpm.vpnl.label 1198 mri_label2label: Done mris_label2annot --s sub-08YFFYY2_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt Number of ctab entries 9 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label cmdline mris_label2annot --s sub-08YFFYY2_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label sysname Linux hostname c-03-06 machine x86_64 user dal247378 subject sub-08YFFYY2_ses-00A hemi lh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.orig set_atable_from_ctable(): 9 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.FG1.mpm.vpnl.label 1 1376057 FG1.mpm.vpnl (57 255 20 255) 1 reading lh.FG2.mpm.vpnl.label 2 16711935 FG2.mpm.vpnl (255 0 255 255) 2 reading lh.FG3.mpm.vpnl.label 3 16711680 FG3.mpm.vpnl (0 0 255 255) 3 reading lh.FG4.mpm.vpnl.label 4 1705837 FG4.mpm.vpnl (109 7 26 255) 4 reading lh.hOc1.mpm.vpnl.label 5 25600 hOc1.mpm.vpnl (0 100 0 255) 5 reading lh.hOc2.mpm.vpnl.label 6 255 hOc2.mpm.vpnl (255 0 0 255) 6 reading lh.hOc3v.mpm.vpnl.label 7 16776960 hOc3v.mpm.vpnl (0 255 255 255) 7 reading lh.hOc4v.mpm.vpnl.label 8 65535 hOc4v.mpm.vpnl (255 255 0 255) ****** Vertices Mapped To Multiple Labels ****** Found 113853 unmapped vertices out of 127731 ********************************************** Mapping unhit to unknown Found 113853 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.mpm.vpnl.annot mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 85 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.thresh.label 1099 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 99 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.thresh.label 2191 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA3a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 9 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.thresh.label 1513 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA3b_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 58 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.thresh.label 2054 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA4a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 61 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.thresh.label 2380 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA4p_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 53 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.thresh.label 1602 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA6_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 159 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.thresh.label 7194 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA44_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 16 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.thresh.label 1928 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.BA45_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 123 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.thresh.label 1274 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.V1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 593 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.thresh.label 3998 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.V2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 567 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.thresh.label 3901 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.MT_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 85 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.thresh.label 598 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 470 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 470 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 23 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.thresh.label 493 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/lh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./lh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 450 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 450 nlabel points Performing mapping from target back to the source label 127731 Number of reverse mapping hits = 12 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.thresh.label 462 mri_label2label: Done mris_label2annot --s sub-08YFFYY2_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label cmdline mris_label2annot --s sub-08YFFYY2_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname c-03-06 machine x86_64 user dal247378 subject sub-08YFFYY2_ses-00A hemi lh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.BA1_exvivo.label 1 1530880 BA1_exvivo (0 92 23 255) 1 reading lh.BA2_exvivo.label 2 16749699 BA2_exvivo (131 148 255 255) 2 reading lh.BA3a_exvivo.label 3 16711680 BA3a_exvivo (0 0 255 255) 3 reading lh.BA3b_exvivo.label 4 3368703 BA3b_exvivo (255 102 51 255) 4 reading lh.BA4a_exvivo.label 5 1376196 BA4a_exvivo (196 255 20 255) 5 reading lh.BA4p_exvivo.label 6 13382655 BA4p_exvivo (255 51 204 255) 6 reading lh.BA6_exvivo.label 7 10036737 BA6_exvivo (1 38 153 255) 7 reading lh.BA44_exvivo.label 8 2490521 BA44_exvivo (153 0 38 255) 8 reading lh.BA45_exvivo.label 9 39283 BA45_exvivo (115 153 0 255) 9 reading lh.V1_exvivo.label 10 3993 V1_exvivo (153 15 0 255) 10 reading lh.V2_exvivo.label 11 8508928 V2_exvivo (0 214 129 255) 11 reading lh.MT_exvivo.label 12 10027163 MT_exvivo (155 0 153 255) 12 reading lh.perirhinal_exvivo.label 13 16422433 perirhinal_exvivo (33 150 250 255) 13 reading lh.entorhinal_exvivo.label 14 16392598 entorhinal_exvivo (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 89650 unmapped vertices out of 127731 ********************************************** Mapping unhit to unknown Found 89650 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.BA_exvivo.annot mris_label2annot --s sub-08YFFYY2_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label cmdline mris_label2annot --s sub-08YFFYY2_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname c-03-06 machine x86_64 user dal247378 subject sub-08YFFYY2_ses-00A hemi lh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.BA1_exvivo.thresh.label 1 1530880 BA1_exvivo.thresh (0 92 23 255) 1 reading lh.BA2_exvivo.thresh.label 2 16749699 BA2_exvivo.thresh (131 148 255 255) 2 reading lh.BA3a_exvivo.thresh.label 3 16711680 BA3a_exvivo.thresh (0 0 255 255) 3 reading lh.BA3b_exvivo.thresh.label 4 3368703 BA3b_exvivo.thresh (255 102 51 255) 4 reading lh.BA4a_exvivo.thresh.label 5 1376196 BA4a_exvivo.thresh (196 255 20 255) 5 reading lh.BA4p_exvivo.thresh.label 6 13382655 BA4p_exvivo.thresh (255 51 204 255) 6 reading lh.BA6_exvivo.thresh.label 7 10036737 BA6_exvivo.thresh (1 38 153 255) 7 reading lh.BA44_exvivo.thresh.label 8 2490521 BA44_exvivo.thresh (153 0 38 255) 8 reading lh.BA45_exvivo.thresh.label 9 39283 BA45_exvivo.thresh (115 153 0 255) 9 reading lh.V1_exvivo.thresh.label 10 3993 V1_exvivo.thresh (153 15 0 255) 10 reading lh.V2_exvivo.thresh.label 11 8508928 V2_exvivo.thresh (0 214 129 255) 11 reading lh.MT_exvivo.thresh.label 12 10027163 MT_exvivo.thresh (155 0 153 255) 12 reading lh.perirhinal_exvivo.thresh.label 13 16422433 perirhinal_exvivo.thresh (33 150 250 255) 13 reading lh.entorhinal_exvivo.thresh.label 14 16392598 entorhinal_exvivo.thresh (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 105130 unmapped vertices out of 127731 ********************************************** Mapping unhit to unknown Found 105130 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/lh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-08YFFYY2_ses-00A lh white computing statistics for each annotation in ./lh.BA_exvivo.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 256927 Total vertex volume 256759 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 1204 813 2881 2.608 0.630 0.144 0.035 20 1.6 BA1_exvivo 3766 2494 6596 2.484 0.506 0.106 0.019 28 3.3 BA2_exvivo 1054 722 1010 1.859 0.415 0.133 0.027 8 1.2 BA3a_exvivo 2313 1577 3539 1.937 0.625 0.099 0.020 21 1.8 BA3b_exvivo 1655 1049 3773 2.948 0.521 0.098 0.022 10 1.4 BA4a_exvivo 1366 906 2252 2.569 0.459 0.091 0.022 6 1.1 BA4p_exvivo 9122 6225 22380 2.935 0.606 0.113 0.025 85 8.8 BA6_exvivo 1903 1329 4106 2.746 0.360 0.102 0.022 19 1.4 BA44_exvivo 2631 1812 5956 2.713 0.542 0.105 0.021 25 2.2 BA45_exvivo 3062 2216 4542 1.999 0.506 0.152 0.043 47 5.5 V1_exvivo 6602 4819 11175 2.180 0.485 0.161 0.044 127 11.5 V2_exvivo 2110 1456 4102 2.572 0.476 0.111 0.022 21 1.9 MT_exvivo 643 466 1395 2.859 0.640 0.125 0.030 5 0.9 perirhinal_exvivo 650 390 1542 2.787 0.916 0.097 0.035 6 0.9 entorhinal_exvivo mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-08YFFYY2_ses-00A lh white computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 256927 Total vertex volume 256759 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 816 506 1971 2.728 0.645 0.141 0.032 14 1.0 BA1_exvivo.thresh 1644 1088 3004 2.454 0.533 0.097 0.019 11 1.3 BA2_exvivo.thresh 915 627 836 1.824 0.417 0.137 0.029 7 1.2 BA3a_exvivo.thresh 1496 1028 1820 1.643 0.383 0.092 0.016 8 1.1 BA3b_exvivo.thresh 1600 1020 3381 2.865 0.535 0.093 0.021 7 1.4 BA4a_exvivo.thresh 1117 740 1784 2.526 0.448 0.093 0.023 5 1.0 BA4p_exvivo.thresh 5050 3426 12535 2.931 0.572 0.116 0.026 49 5.1 BA6_exvivo.thresh 1179 838 2569 2.732 0.335 0.110 0.025 15 1.0 BA44_exvivo.thresh 1098 771 2960 2.895 0.524 0.117 0.023 13 1.1 BA45_exvivo.thresh 3229 2340 4898 2.014 0.490 0.148 0.042 48 5.7 V1_exvivo.thresh 3268 2420 5565 2.116 0.496 0.169 0.050 77 6.4 V2_exvivo.thresh 557 392 1234 2.707 0.505 0.106 0.020 4 0.4 MT_exvivo.thresh 265 188 573 2.963 0.614 0.106 0.030 2 0.3 perirhinal_exvivo.thresh 367 244 1021 3.039 0.726 0.092 0.030 3 0.4 entorhinal_exvivo.thresh mris_anatomical_stats done #-------------------------------------------- #@# BA_exvivo Labels rh Fri Nov 7 04:04:46 CST 2025 mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA1_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 111 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.label 4073 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA2_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 150 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.label 6837 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA3a_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA3a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 33 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.label 4013 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA3b_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA3b_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 89 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.label 4611 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA4a_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA4a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 99 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.label 5846 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA4p_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA4p_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 63 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.label 4536 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA6_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA6_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 222 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.label 12478 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA44_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA44_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 414 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.label 7326 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA45_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA45_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 632 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.label 5987 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.V1_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.V1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 841 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.label 5568 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.V2_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.V2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 1615 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.label 9631 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.MT_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.MT_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 353 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.label 2285 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.entorhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1038 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1038 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 108 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.label 1146 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.perirhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 58 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.label 810 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.FG1.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.FG1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.FG1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 541 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 541 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 87 Checking for and removing duplicates Writing label file ./rh.FG1.mpm.vpnl.label 628 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.FG2.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.FG2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.FG2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 721 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 721 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 94 Checking for and removing duplicates Writing label file ./rh.FG2.mpm.vpnl.label 815 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.FG3.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.FG3.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.FG3.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1523 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1523 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 141 Checking for and removing duplicates Writing label file ./rh.FG3.mpm.vpnl.label 1664 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.FG4.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.FG4.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.FG4.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1586 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1586 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 71 Checking for and removing duplicates Writing label file ./rh.FG4.mpm.vpnl.label 1657 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.hOc1.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.hOc1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.hOc1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3667 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3667 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 616 Checking for and removing duplicates Writing label file ./rh.hOc1.mpm.vpnl.label 4283 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.hOc2.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.hOc2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.hOc2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2719 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2719 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 530 Checking for and removing duplicates Writing label file ./rh.hOc2.mpm.vpnl.label 3249 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.hOc3v.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.hOc3v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1228 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1228 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 295 Checking for and removing duplicates Writing label file ./rh.hOc3v.mpm.vpnl.label 1523 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.hOc4v.mpm.vpnl.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.hOc4v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1025 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1025 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 189 Checking for and removing duplicates Writing label file ./rh.hOc4v.mpm.vpnl.label 1214 mri_label2label: Done mris_label2annot --s sub-08YFFYY2_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt Number of ctab entries 9 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label cmdline mris_label2annot --s sub-08YFFYY2_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label sysname Linux hostname c-03-06 machine x86_64 user dal247378 subject sub-08YFFYY2_ses-00A hemi rh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.orig set_atable_from_ctable(): 9 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.FG1.mpm.vpnl.label 1 1376057 FG1.mpm.vpnl (57 255 20 255) 1 reading rh.FG2.mpm.vpnl.label 2 16711935 FG2.mpm.vpnl (255 0 255 255) 2 reading rh.FG3.mpm.vpnl.label 3 16711680 FG3.mpm.vpnl (0 0 255 255) 3 reading rh.FG4.mpm.vpnl.label 4 1705837 FG4.mpm.vpnl (109 7 26 255) 4 reading rh.hOc1.mpm.vpnl.label 5 25600 hOc1.mpm.vpnl (0 100 0 255) 5 reading rh.hOc2.mpm.vpnl.label 6 255 hOc2.mpm.vpnl (255 0 0 255) 6 reading rh.hOc3v.mpm.vpnl.label 7 16776960 hOc3v.mpm.vpnl (0 255 255 255) 7 reading rh.hOc4v.mpm.vpnl.label 8 65535 hOc4v.mpm.vpnl (255 255 0 255) ****** Vertices Mapped To Multiple Labels ****** Found 113887 unmapped vertices out of 126591 ********************************************** Mapping unhit to unknown Found 113887 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.mpm.vpnl.annot mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 43 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.thresh.label 919 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 68 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.thresh.label 2756 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA3a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 9 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.thresh.label 1707 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA3b_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 37 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.thresh.label 2220 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA4a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 11 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.thresh.label 1399 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA4p_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 33 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.thresh.label 1522 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA6_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 116 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.thresh.label 7075 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA44_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 99 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.thresh.label 1111 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.BA45_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 107 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.thresh.label 1285 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.V1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 573 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.thresh.label 3805 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.V2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 648 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.thresh.label 4085 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.MT_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 54 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.thresh.label 322 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 694 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 694 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 57 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.thresh.label 751 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject sub-08YFFYY2_ses-00A --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_017/fsaverage/label/rh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-08YFFYY2_ses-00A trglabel = ./rh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 291 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_017/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 291 nlabel points Performing mapping from target back to the source label 126591 Number of reverse mapping hits = 23 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.thresh.label 314 mri_label2label: Done mris_label2annot --s sub-08YFFYY2_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label cmdline mris_label2annot --s sub-08YFFYY2_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname c-03-06 machine x86_64 user dal247378 subject sub-08YFFYY2_ses-00A hemi rh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.BA1_exvivo.label 1 1530880 BA1_exvivo (0 92 23 255) 1 reading rh.BA2_exvivo.label 2 16749699 BA2_exvivo (131 148 255 255) 2 reading rh.BA3a_exvivo.label 3 16711680 BA3a_exvivo (0 0 255 255) 3 reading rh.BA3b_exvivo.label 4 3368703 BA3b_exvivo (255 102 51 255) 4 reading rh.BA4a_exvivo.label 5 1376196 BA4a_exvivo (196 255 20 255) 5 reading rh.BA4p_exvivo.label 6 13382655 BA4p_exvivo (255 51 204 255) 6 reading rh.BA6_exvivo.label 7 10036737 BA6_exvivo (1 38 153 255) 7 reading rh.BA44_exvivo.label 8 2490521 BA44_exvivo (153 0 38 255) 8 reading rh.BA45_exvivo.label 9 39283 BA45_exvivo (115 153 0 255) 9 reading rh.V1_exvivo.label 10 3993 V1_exvivo (153 15 0 255) 10 reading rh.V2_exvivo.label 11 8508928 V2_exvivo (0 214 129 255) 11 reading rh.MT_exvivo.label 12 10027163 MT_exvivo (155 0 153 255) 12 reading rh.perirhinal_exvivo.label 13 16422433 perirhinal_exvivo (33 150 250 255) 13 reading rh.entorhinal_exvivo.label 14 16392598 entorhinal_exvivo (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 88330 unmapped vertices out of 126591 ********************************************** Mapping unhit to unknown Found 88330 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.BA_exvivo.annot mris_label2annot --s sub-08YFFYY2_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label cmdline mris_label2annot --s sub-08YFFYY2_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname c-03-06 machine x86_64 user dal247378 subject sub-08YFFYY2_ses-00A hemi rh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_017 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.BA1_exvivo.thresh.label 1 1530880 BA1_exvivo.thresh (0 92 23 255) 1 reading rh.BA2_exvivo.thresh.label 2 16749699 BA2_exvivo.thresh (131 148 255 255) 2 reading rh.BA3a_exvivo.thresh.label 3 16711680 BA3a_exvivo.thresh (0 0 255 255) 3 reading rh.BA3b_exvivo.thresh.label 4 3368703 BA3b_exvivo.thresh (255 102 51 255) 4 reading rh.BA4a_exvivo.thresh.label 5 1376196 BA4a_exvivo.thresh (196 255 20 255) 5 reading rh.BA4p_exvivo.thresh.label 6 13382655 BA4p_exvivo.thresh (255 51 204 255) 6 reading rh.BA6_exvivo.thresh.label 7 10036737 BA6_exvivo.thresh (1 38 153 255) 7 reading rh.BA44_exvivo.thresh.label 8 2490521 BA44_exvivo.thresh (153 0 38 255) 8 reading rh.BA45_exvivo.thresh.label 9 39283 BA45_exvivo.thresh (115 153 0 255) 9 reading rh.V1_exvivo.thresh.label 10 3993 V1_exvivo.thresh (153 15 0 255) 10 reading rh.V2_exvivo.thresh.label 11 8508928 V2_exvivo.thresh (0 214 129 255) 11 reading rh.MT_exvivo.thresh.label 12 10027163 MT_exvivo.thresh (155 0 153 255) 12 reading rh.perirhinal_exvivo.thresh.label 13 16422433 perirhinal_exvivo.thresh (33 150 250 255) 13 reading rh.entorhinal_exvivo.thresh.label 14 16392598 entorhinal_exvivo.thresh (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 105384 unmapped vertices out of 126591 ********************************************** Mapping unhit to unknown Found 105384 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/label/rh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-08YFFYY2_ses-00A rh white computing statistics for each annotation in ./rh.BA_exvivo.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 252614 Total vertex volume 252450 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 917 568 2010 2.531 0.552 0.136 0.034 18 1.1 BA1_exvivo 3215 2150 5183 2.304 0.496 0.103 0.019 26 2.6 BA2_exvivo 1047 737 1085 1.927 0.456 0.134 0.027 9 1.2 BA3a_exvivo 1849 1254 2559 1.757 0.532 0.094 0.020 14 1.3 BA3b_exvivo 1480 960 3146 2.764 0.476 0.094 0.022 8 1.2 BA4a_exvivo 1311 854 2181 2.549 0.402 0.094 0.021 7 1.2 BA4p_exvivo 7316 5018 18264 2.964 0.568 0.111 0.024 64 6.8 BA6_exvivo 3525 2385 7332 2.853 0.461 0.104 0.021 27 3.0 BA44_exvivo 4056 2909 9518 2.724 0.545 0.123 0.026 49 4.2 BA45_exvivo 3379 2447 4928 1.993 0.441 0.139 0.040 45 5.3 V1_exvivo 7109 5033 11524 2.154 0.506 0.149 0.038 108 10.8 V2_exvivo 2091 1440 4306 2.611 0.554 0.119 0.025 27 2.1 MT_exvivo 324 251 817 3.114 0.938 0.137 0.029 3 0.5 perirhinal_exvivo 642 429 1596 2.746 1.171 0.133 0.045 9 1.3 entorhinal_exvivo mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-08YFFYY2_ses-00A rh white computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot. reading input surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_017/sub-08YFFYY2_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 252614 Total vertex volume 252450 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1427975 mm^3 (det: 1.364243 ) 667 412 1435 2.457 0.549 0.135 0.034 11 0.9 BA1_exvivo.thresh 1872 1241 2912 2.241 0.481 0.099 0.017 13 1.4 BA2_exvivo.thresh 923 651 880 1.902 0.444 0.138 0.026 7 1.1 BA3a_exvivo.thresh 1441 984 1579 1.559 0.334 0.079 0.014 6 0.8 BA3b_exvivo.thresh 850 542 2040 2.955 0.459 0.112 0.029 7 0.9 BA4a_exvivo.thresh 1088 718 1727 2.509 0.404 0.091 0.022 5 1.0 BA4p_exvivo.thresh 4736 3268 11649 2.900 0.574 0.112 0.024 43 4.3 BA6_exvivo.thresh 921 661 2601 3.058 0.472 0.121 0.029 11 1.0 BA44_exvivo.thresh 1024 711 2671 2.899 0.496 0.119 0.026 13 1.0 BA45_exvivo.thresh 3206 2311 4605 1.999 0.447 0.139 0.039 42 5.0 V1_exvivo.thresh 3590 2647 5770 2.039 0.509 0.169 0.048 63 6.8 V2_exvivo.thresh 292 225 729 2.800 0.560 0.149 0.033 5 0.4 MT_exvivo.thresh 22 18 73 3.913 0.807 0.163 0.026 0 0.0 perirhinal_exvivo.thresh 575 390 1498 3.044 0.878 0.121 0.030 4 0.8 entorhinal_exvivo.thresh mris_anatomical_stats done Started at Fri Nov 7 02:31:30 CST 2025 Ended at Fri Nov 7 04:06:27 CST 2025 #@#%# recon-all-run-time-hours 1.582 recon-all -s sub-08YFFYY2_ses-00A finished without error at Fri Nov 7 04:06:27 CST 2025 #New# invocation of recon-all Tue Apr 21 13:09:45 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/recon-all -s sub-08YFFYY2_ses-00A -localGI subjid sub-08YFFYY2_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Actual FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 build-stamp.txt: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-03-16 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 8192 kbytes maxproc 1545830 maxlocks unlimited maxsignal 1545830 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 377Gi 35Gi 294Gi 17Gi 69Gi 342Gi Swap: 0B 0B 0B SLURM_JOB_ID 174833 ######################################## program versions used 8.0.0 (freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a) 8.0.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mris_convert -all-info ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_motion_correct.fsl 8.0.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-16 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ####################################### GCADIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### Tue Apr 21 13:09:46 CDT 2026 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg --i /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/synthstrip.mgz --t /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --affine-only --o /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305 --threads 1 -rwxr-x--- 1 root kdamme 30890 May 28 2025 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-03-16 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 3138973 Tue Apr 21 13:09:46 CDT 2026 mri_synthmorph -m affine -t /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/aff.lta /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/synthstrip.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz -j 1 #@# mri_synthmorph: affine, threads: 1, VmPeak: 10670824 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305 /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A lta_convert --invert --inlta /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/aff.lta --outlta /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta 8.0.0 --invert: will invert transform. --inlta: /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/aff.lta input LTA transform. --outlta: /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta output LTA. LTA read, type : 1 1.07987 -0.03636 -0.04297 -0.03922; 0.06002 1.06760 0.24149 -48.81013; 0.01792 -0.18516 1.13831 -0.42700; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta... lta_convert successful. To check affine registration tkregisterfv --mov /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/synthstrip.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --reg /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/transforms/synthmorph.mni305/aff.lta AffineOnly specified, so exiting now Started at Tue Apr 21 13:09:46 CDT 2026 Ended at Tue Apr 21 13:10:24 CDT 2026 Fs-Synthmorph-Reg-Run-Time-Sec 38 Fs-Synthmorph-Reg-Run-Time-Min 0.63 Fs-Synthmorph-Reg-Run-Time-Hours 0.01 fs-synthmorph-reg Done 8.0.0 --ltavox2vox: output LTA as VOX_TO_VOX transform. --inlta: synthmorph.mni305/aff.lta input LTA transform. --outlta: talairach.xfm.lta output LTA. LTA read, type : 1 1.07987 -0.03636 -0.04297 -0.03922; 0.06002 1.06760 0.24149 -48.81013; 0.01792 -0.18516 1.13831 -0.42700; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file talairach.xfm.lta... lta_convert successful. 8.0.0 --inlta: talairach.xfm.lta input LTA transform. --outmni: talairach.xfm output MNI/XFM matrix. LTA read, type : 1 1.07987 -0.03636 -0.04297 -0.03923; 0.06002 1.06760 0.24149 -48.81013; 0.01792 -0.18516 1.13831 -0.42700; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. fs-synthmorph-reg --s sub-08YFFYY2_ses-00A --threads 1 --i /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri/orig.mgz --test fs-synthmorph-reg: update not needed #-------------------------------------- #@# MCADura Segmentation Tue Apr 21 13:10:25 CDT 2026 MCADura Segmentation does not need to be updated #-------------------------------------- #@# VSinus Segmentation Tue Apr 21 13:10:25 CDT 2026 VSinus Segmentation does not need to be updated #-------------------------------------- #@# EntoWM Segmentation Tue Apr 21 13:10:25 CDT 2026 EntoWM Segmentation does not need to be updated 1 3006 836 857.8839 wm-lh-entorhinal 2 3201 196 210.3025 wm-lh-gyrus-ambiens 3 4006 859 870.8378 wm-rh-entorhinal 4 4201 231 243.4021 wm-rh-gyrus-ambiens #-------------------------------------- #@# CC Seg Tue Apr 21 13:10:25 CDT 2026 seg2cc --s sub-08YFFYY2_ses-00A seg2cc: update not needed. Run with --force-update to force an update #-------------------------------------- #@# Merge ASeg Tue Apr 21 13:10:25 CDT 2026 #@# white curv lh Tue Apr 21 13:10:25 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv insurf ../surf/lh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv type -1 #@# white area lh Tue Apr 21 13:10:26 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area Update not needed #@# pial curv lh Tue Apr 21 13:10:26 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial Update not needed #@# pial area lh Tue Apr 21 13:10:26 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial writing curvature file ../surf/lh.area.pial type -1 #@# thickness lh Tue Apr 21 13:10:27 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness 0 of 127731 vertices processed 25000 of 127731 vertices processed 50000 of 127731 vertices processed 75000 of 127731 vertices processed 100000 of 127731 vertices processed 125000 of 127731 vertices processed 0 of 127731 vertices processed 25000 of 127731 vertices processed 50000 of 127731 vertices processed 75000 of 127731 vertices processed 100000 of 127731 vertices processed 125000 of 127731 vertices processed thickness calculation complete, 242:983 truncations. 49974 vertices at 0 distance 104169 vertices at 1 distance 67803 vertices at 2 distance 23071 vertices at 3 distance 6905 vertices at 4 distance 2144 vertices at 5 distance 738 vertices at 6 distance 246 vertices at 7 distance 91 vertices at 8 distance 59 vertices at 9 distance 48 vertices at 10 distance 44 vertices at 11 distance 31 vertices at 12 distance 28 vertices at 13 distance 21 vertices at 14 distance 16 vertices at 15 distance 12 vertices at 16 distance 14 vertices at 17 distance 12 vertices at 18 distance 14 vertices at 19 distance 22 vertices at 20 distance writing curvature file ../surf/lh.thickness type -1 #@# area and vertex vol lh Tue Apr 21 13:10:43 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12380 mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12380 mris_convert --volume sub-08YFFYY2_ses-00A lh /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/lh.volume mris_convert --volume sub-08YFFYY2_ses-00A lh /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/lh.volume masking with /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/label/lh.cortex.label Total face volume 256927 Total vertex volume 256759 (mask=0) #@# sub-08YFFYY2_ses-00A lh 256759 vertexvol Done #@# white curv rh Tue Apr 21 13:10:44 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv Update not needed #@# white area rh Tue Apr 21 13:10:44 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area Update not needed #@# pial curv rh Tue Apr 21 13:10:44 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial Update not needed #@# pial area rh Tue Apr 21 13:10:45 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial writing curvature file ../surf/rh.area.pial type -1 #@# thickness rh Tue Apr 21 13:10:45 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness 0 of 126591 vertices processed 25000 of 126591 vertices processed 50000 of 126591 vertices processed 75000 of 126591 vertices processed 100000 of 126591 vertices processed 125000 of 126591 vertices processed 0 of 126591 vertices processed 25000 of 126591 vertices processed 50000 of 126591 vertices processed 75000 of 126591 vertices processed 100000 of 126591 vertices processed 125000 of 126591 vertices processed thickness calculation complete, 111:661 truncations. 50482 vertices at 0 distance 103915 vertices at 1 distance 66755 vertices at 2 distance 21935 vertices at 3 distance 6766 vertices at 4 distance 2019 vertices at 5 distance 665 vertices at 6 distance 240 vertices at 7 distance 117 vertices at 8 distance 58 vertices at 9 distance 35 vertices at 10 distance 30 vertices at 11 distance 28 vertices at 12 distance 26 vertices at 13 distance 20 vertices at 14 distance 13 vertices at 15 distance 15 vertices at 16 distance 15 vertices at 17 distance 25 vertices at 18 distance 9 vertices at 19 distance 14 vertices at 20 distance writing curvature file ../surf/rh.thickness type -1 #@# area and vertex vol rh Tue Apr 21 13:11:01 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/mri /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12368 mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12368 mris_convert --volume sub-08YFFYY2_ses-00A rh /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/rh.volume mris_convert --volume sub-08YFFYY2_ses-00A rh /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/rh.volume masking with /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/label/rh.cortex.label Total face volume 252614 Total vertex volume 252450 (mask=0) #@# sub-08YFFYY2_ses-00A rh 252450 vertexvol Done /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf #-------------------------------------------- #@# Local Gyrification Index lh Tue Apr 21 13:11:02 CDT 2026 mris_compute_lgi --i lh.pial ================= rm -Rf /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 62156 voxel in cpt #1: X=2 [v=62156,e=186462,f=124308] located at (-22.900324, -15.448203, 40.967854) For the whole surface: X=2 [v=62156,e=186462,f=124308] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 62156 - 186462 + 124308 = 2 --> 0 holes F =2V-4: 124308 = 124312-4 (0) 2E=3F: 372924 = 372924 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= mris_convert -n lh.pial-outer-smoothed /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc Reading in lh.pial-outer-smoothed Outputting normals /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial','/tmp/tmp.eEgSWD.m'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.06 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 18.7700 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial','/tmp/tmp.Y01R1U.m'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 [Warning: Unable to load Toolbox Path Cache /home/dal247378/.matlab/R2024b/toolbox_cache-24.2.0-4034234585-glnxa64.xml. The cache file is not in the correct format. It will be regenerated upon quitting MATLAB.] For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.04 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 124308 face 10000 / 124308 face 15000 / 124308 face 20000 / 124308 face 25000 / 124308 face 30000 / 124308 face 35000 / 124308 face 40000 / 124308 face 45000 / 124308 face 50000 / 124308 face 55000 / 124308 face 60000 / 124308 face 65000 / 124308 face 70000 / 124308 face 75000 / 124308 face 80000 / 124308 face 85000 / 124308 face 90000 / 124308 face 95000 / 124308 face 100000 / 124308 face 105000 / 124308 face 110000 / 124308 face 115000 / 124308 face 120000 / 124308 mesh_outer = struct with fields: vertices: [62156x3 double] faces: [124308x3 double] facesOfVertex: [62156x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (47.03 sec). ... creating path file for vertex 1 / 62156 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 62156 ... creating path file for vertex 201 / 62156 ... creating path file for vertex 301 / 62156 ... creating path file for vertex 401 / 62156 ... creating path file for vertex 501 / 62156 ... creating path file for vertex 601 / 62156 ... creating path file for vertex 701 / 62156 ... creating path file for vertex 801 / 62156 ... creating path file for vertex 901 / 62156 ... creating path file for vertex 1001 / 62156 ... creating path file for vertex 1101 / 62156 ... creating path file for vertex 1201 / 62156 ... creating path file for vertex 1301 / 62156 ... creating path file for vertex 1401 / 62156 ... creating path file for vertex 1501 / 62156 ... creating path file for vertex 1601 / 62156 ... creating path file for vertex 1701 / 62156 ... creating path file for vertex 1801 / 62156 ... creating path file for vertex 1901 / 62156 ... creating path file for vertex 2001 / 62156 ... creating path file for vertex 2101 / 62156 ... creating path file for vertex 2201 / 62156 ... creating path file for vertex 2301 / 62156 ... creating path file for vertex 2401 / 62156 ... creating path file for vertex 2501 / 62156 ... creating path file for vertex 2601 / 62156 ... creating path file for vertex 2701 / 62156 ... creating path file for vertex 2801 / 62156 ... creating path file for vertex 2901 / 62156 ... creating path file for vertex 3001 / 62156 ... creating path file for vertex 3101 / 62156 ... creating path file for vertex 3201 / 62156 ... creating path file for vertex 3301 / 62156 ... creating path file for vertex 3401 / 62156 ... creating path file for vertex 3501 / 62156 ... creating path file for vertex 3601 / 62156 ... creating path file for vertex 3701 / 62156 ... creating path file for vertex 3801 / 62156 ... creating path file for vertex 3901 / 62156 ... creating path file for vertex 4001 / 62156 ... creating path file for vertex 4101 / 62156 ... creating path file for vertex 4201 / 62156 ... creating path file for vertex 4301 / 62156 ... creating path file for vertex 4401 / 62156 ... creating path file for vertex 4501 / 62156 ... creating path file for vertex 4601 / 62156 ... creating path file for vertex 4701 / 62156 ... creating path file for vertex 4801 / 62156 ... creating path file for vertex 4901 / 62156 ... creating path file for vertex 5001 / 62156 area file for outer ROIs saved at 5001 ... creating path file for vertex 5101 / 62156 ... creating path file for vertex 5201 / 62156 ... creating path file for vertex 5301 / 62156 ... creating path file for vertex 5401 / 62156 ... creating path file for vertex 5501 / 62156 ... creating path file for vertex 5601 / 62156 ... creating path file for vertex 5701 / 62156 ... creating path file for vertex 5801 / 62156 ... creating path file for vertex 5901 / 62156 ... creating path file for vertex 6001 / 62156 ... creating path file for vertex 6101 / 62156 ... creating path file for vertex 6201 / 62156 ... creating path file for vertex 6301 / 62156 ... creating path file for vertex 6401 / 62156 ... creating path file for vertex 6501 / 62156 ... creating path file for vertex 6601 / 62156 ... creating path file for vertex 6701 / 62156 ... creating path file for vertex 6801 / 62156 ... creating path file for vertex 6901 / 62156 ... creating path file for vertex 7001 / 62156 ... creating path file for vertex 7101 / 62156 ... creating path file for vertex 7201 / 62156 ... creating path file for vertex 7301 / 62156 ... creating path file for vertex 7401 / 62156 ... creating path file for vertex 7501 / 62156 ... creating path file for vertex 7601 / 62156 ... creating path file for vertex 7701 / 62156 ... creating path file for vertex 7801 / 62156 ... creating path file for vertex 7901 / 62156 ... creating path file for vertex 8001 / 62156 ... creating path file for vertex 8101 / 62156 ... creating path file for vertex 8201 / 62156 ... creating path file for vertex 8301 / 62156 ... creating path file for vertex 8401 / 62156 ... creating path file for vertex 8501 / 62156 ... creating path file for vertex 8601 / 62156 ... creating path file for vertex 8701 / 62156 ... creating path file for vertex 8801 / 62156 ... creating path file for vertex 8901 / 62156 ... creating path file for vertex 9001 / 62156 ... creating path file for vertex 9101 / 62156 ... creating path file for vertex 9201 / 62156 ... creating path file for vertex 9301 / 62156 ... creating path file for vertex 9401 / 62156 ... creating path file for vertex 9501 / 62156 ... creating path file for vertex 9601 / 62156 ... creating path file for vertex 9701 / 62156 ... creating path file for vertex 9801 / 62156 ... creating path file for vertex 9901 / 62156 ... creating path file for vertex 10001 / 62156 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 62156 ... creating path file for vertex 10201 / 62156 ... creating path file for vertex 10301 / 62156 ... creating path file for vertex 10401 / 62156 ... creating path file for vertex 10501 / 62156 ... creating path file for vertex 10601 / 62156 ... creating path file for vertex 10701 / 62156 ... creating path file for vertex 10801 / 62156 ... creating path file for vertex 10901 / 62156 ... creating path file for vertex 11001 / 62156 ... creating path file for vertex 11101 / 62156 ... creating path file for vertex 11201 / 62156 ... creating path file for vertex 11301 / 62156 ... creating path file for vertex 11401 / 62156 ... creating path file for vertex 11501 / 62156 ... creating path file for vertex 11601 / 62156 ... creating path file for vertex 11701 / 62156 ... creating path file for vertex 11801 / 62156 ... creating path file for vertex 11901 / 62156 ... creating path file for vertex 12001 / 62156 ... creating path file for vertex 12101 / 62156 ... creating path file for vertex 12201 / 62156 ... creating path file for vertex 12301 / 62156 ... creating path file for vertex 12401 / 62156 ... creating path file for vertex 12501 / 62156 ... creating path file for vertex 12601 / 62156 ... creating path file for vertex 12701 / 62156 ... creating path file for vertex 12801 / 62156 ... creating path file for vertex 12901 / 62156 ... creating path file for vertex 13001 / 62156 ... creating path file for vertex 13101 / 62156 ... creating path file for vertex 13201 / 62156 ... creating path file for vertex 13301 / 62156 ... creating path file for vertex 13401 / 62156 ... creating path file for vertex 13501 / 62156 ... creating path file for vertex 13601 / 62156 ... creating path file for vertex 13701 / 62156 ... creating path file for vertex 13801 / 62156 ... creating path file for vertex 13901 / 62156 ... creating path file for vertex 14001 / 62156 ... creating path file for vertex 14101 / 62156 ... creating path file for vertex 14201 / 62156 ... creating path file for vertex 14301 / 62156 ... creating path file for vertex 14401 / 62156 ... creating path file for vertex 14501 / 62156 ... creating path file for vertex 14601 / 62156 ... creating path file for vertex 14701 / 62156 ... creating path file for vertex 14801 / 62156 ... creating path file for vertex 14901 / 62156 ... creating path file for vertex 15001 / 62156 area file for outer ROIs saved at 15001 ... creating path file for vertex 15101 / 62156 ... creating path file for vertex 15201 / 62156 ... creating path file for vertex 15301 / 62156 ... creating path file for vertex 15401 / 62156 ... creating path file for vertex 15501 / 62156 ... creating path file for vertex 15601 / 62156 ... creating path file for vertex 15701 / 62156 ... creating path file for vertex 15801 / 62156 ... creating path file for vertex 15901 / 62156 ... creating path file for vertex 16001 / 62156 ... creating path file for vertex 16101 / 62156 ... creating path file for vertex 16201 / 62156 ... creating path file for vertex 16301 / 62156 ... creating path file for vertex 16401 / 62156 ... creating path file for vertex 16501 / 62156 ... creating path file for vertex 16601 / 62156 ... creating path file for vertex 16701 / 62156 ... creating path file for vertex 16801 / 62156 ... creating path file for vertex 16901 / 62156 ... creating path file for vertex 17001 / 62156 ... creating path file for vertex 17101 / 62156 ... creating path file for vertex 17201 / 62156 ... creating path file for vertex 17301 / 62156 ... creating path file for vertex 17401 / 62156 ... creating path file for vertex 17501 / 62156 ... creating path file for vertex 17601 / 62156 ... creating path file for vertex 17701 / 62156 ... creating path file for vertex 17801 / 62156 ... creating path file for vertex 17901 / 62156 ... creating path file for vertex 18001 / 62156 ... creating path file for vertex 18101 / 62156 ... creating path file for vertex 18201 / 62156 ... creating path file for vertex 18301 / 62156 ... creating path file for vertex 18401 / 62156 ... creating path file for vertex 18501 / 62156 ... creating path file for vertex 18601 / 62156 ... creating path file for vertex 18701 / 62156 ... creating path file for vertex 18801 / 62156 ... creating path file for vertex 18901 / 62156 ... creating path file for vertex 19001 / 62156 ... creating path file for vertex 19101 / 62156 ... creating path file for vertex 19201 / 62156 ... creating path file for vertex 19301 / 62156 ... creating path file for vertex 19401 / 62156 ... creating path file for vertex 19501 / 62156 ... creating path file for vertex 19601 / 62156 ... creating path file for vertex 19701 / 62156 ... creating path file for vertex 19801 / 62156 ... creating path file for vertex 19901 / 62156 ... creating path file for vertex 20001 / 62156 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 62156 ... creating path file for vertex 20201 / 62156 ... creating path file for vertex 20301 / 62156 ... creating path file for vertex 20401 / 62156 ... creating path file for vertex 20501 / 62156 ... creating path file for vertex 20601 / 62156 ... creating path file for vertex 20701 / 62156 ... creating path file for vertex 20801 / 62156 ... creating path file for vertex 20901 / 62156 ... creating path file for vertex 21001 / 62156 ... creating path file for vertex 21101 / 62156 ... creating path file for vertex 21201 / 62156 ... creating path file for vertex 21301 / 62156 ... creating path file for vertex 21401 / 62156 ... creating path file for vertex 21501 / 62156 ... creating path file for vertex 21601 / 62156 ... creating path file for vertex 21701 / 62156 ... creating path file for vertex 21801 / 62156 ... creating path file for vertex 21901 / 62156 ... creating path file for vertex 22001 / 62156 ... creating path file for vertex 22101 / 62156 ... creating path file for vertex 22201 / 62156 ... creating path file for vertex 22301 / 62156 ... creating path file for vertex 22401 / 62156 ... creating path file for vertex 22501 / 62156 ... creating path file for vertex 22601 / 62156 ... creating path file for vertex 22701 / 62156 ... creating path file for vertex 22801 / 62156 ... creating path file for vertex 22901 / 62156 ... creating path file for vertex 23001 / 62156 ... creating path file for vertex 23101 / 62156 ... creating path file for vertex 23201 / 62156 ... creating path file for vertex 23301 / 62156 ... creating path file for vertex 23401 / 62156 ... creating path file for vertex 23501 / 62156 ... creating path file for vertex 23601 / 62156 ... creating path file for vertex 23701 / 62156 ... creating path file for vertex 23801 / 62156 ... creating path file for vertex 23901 / 62156 ... creating path file for vertex 24001 / 62156 ... creating path file for vertex 24101 / 62156 ... creating path file for vertex 24201 / 62156 ... creating path file for vertex 24301 / 62156 ... creating path file for vertex 24401 / 62156 ... creating path file for vertex 24501 / 62156 ... creating path file for vertex 24601 / 62156 ... creating path file for vertex 24701 / 62156 ... creating path file for vertex 24801 / 62156 ... creating path file for vertex 24901 / 62156 ... creating path file for vertex 25001 / 62156 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 62156 ... creating path file for vertex 25201 / 62156 ... creating path file for vertex 25301 / 62156 ... creating path file for vertex 25401 / 62156 ... creating path file for vertex 25501 / 62156 ... creating path file for vertex 25601 / 62156 ... creating path file for vertex 25701 / 62156 ... creating path file for vertex 25801 / 62156 ... creating path file for vertex 25901 / 62156 ... creating path file for vertex 26001 / 62156 ... creating path file for vertex 26101 / 62156 ... creating path file for vertex 26201 / 62156 ... creating path file for vertex 26301 / 62156 ... creating path file for vertex 26401 / 62156 ... creating path file for vertex 26501 / 62156 ... creating path file for vertex 26601 / 62156 ... creating path file for vertex 26701 / 62156 ... creating path file for vertex 26801 / 62156 ... creating path file for vertex 26901 / 62156 ... creating path file for vertex 27001 / 62156 ... creating path file for vertex 27101 / 62156 ... creating path file for vertex 27201 / 62156 ... creating path file for vertex 27301 / 62156 ... creating path file for vertex 27401 / 62156 ... creating path file for vertex 27501 / 62156 ... creating path file for vertex 27601 / 62156 ... creating path file for vertex 27701 / 62156 ... creating path file for vertex 27801 / 62156 ... creating path file for vertex 27901 / 62156 ... creating path file for vertex 28001 / 62156 ... creating path file for vertex 28101 / 62156 ... creating path file for vertex 28201 / 62156 ... creating path file for vertex 28301 / 62156 ... creating path file for vertex 28401 / 62156 ... creating path file for vertex 28501 / 62156 ... creating path file for vertex 28601 / 62156 ... creating path file for vertex 28701 / 62156 ... creating path file for vertex 28801 / 62156 ... creating path file for vertex 28901 / 62156 ... creating path file for vertex 29001 / 62156 ... creating path file for vertex 29101 / 62156 ... creating path file for vertex 29201 / 62156 ... creating path file for vertex 29301 / 62156 ... creating path file for vertex 29401 / 62156 ... creating path file for vertex 29501 / 62156 ... creating path file for vertex 29601 / 62156 ... creating path file for vertex 29701 / 62156 ... creating path file for vertex 29801 / 62156 ... creating path file for vertex 29901 / 62156 ... creating path file for vertex 30001 / 62156 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 62156 ... creating path file for vertex 30201 / 62156 ... creating path file for vertex 30301 / 62156 ... creating path file for vertex 30401 / 62156 ... creating path file for vertex 30501 / 62156 ... creating path file for vertex 30601 / 62156 ... creating path file for vertex 30701 / 62156 ... creating path file for vertex 30801 / 62156 ... creating path file for vertex 30901 / 62156 ... creating path file for vertex 31001 / 62156 ... creating path file for vertex 31101 / 62156 ... creating path file for vertex 31201 / 62156 ... creating path file for vertex 31301 / 62156 ... creating path file for vertex 31401 / 62156 ... creating path file for vertex 31501 / 62156 ... creating path file for vertex 31601 / 62156 ... creating path file for vertex 31701 / 62156 ... creating path file for vertex 31801 / 62156 ... creating path file for vertex 31901 / 62156 ... creating path file for vertex 32001 / 62156 ... creating path file for vertex 32101 / 62156 ... creating path file for vertex 32201 / 62156 ... creating path file for vertex 32301 / 62156 ... creating path file for vertex 32401 / 62156 ... creating path file for vertex 32501 / 62156 ... creating path file for vertex 32601 / 62156 ... creating path file for vertex 32701 / 62156 ... creating path file for vertex 32801 / 62156 ... creating path file for vertex 32901 / 62156 ... creating path file for vertex 33001 / 62156 ... creating path file for vertex 33101 / 62156 ... creating path file for vertex 33201 / 62156 ... creating path file for vertex 33301 / 62156 ... creating path file for vertex 33401 / 62156 ... creating path file for vertex 33501 / 62156 ... creating path file for vertex 33601 / 62156 ... creating path file for vertex 33701 / 62156 ... creating path file for vertex 33801 / 62156 ... creating path file for vertex 33901 / 62156 ... creating path file for vertex 34001 / 62156 ... creating path file for vertex 34101 / 62156 ... creating path file for vertex 34201 / 62156 ... creating path file for vertex 34301 / 62156 ... creating path file for vertex 34401 / 62156 ... creating path file for vertex 34501 / 62156 ... creating path file for vertex 34601 / 62156 ... creating path file for vertex 34701 / 62156 ... creating path file for vertex 34801 / 62156 ... creating path file for vertex 34901 / 62156 ... creating path file for vertex 35001 / 62156 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 62156 ... creating path file for vertex 35201 / 62156 ... creating path file for vertex 35301 / 62156 ... creating path file for vertex 35401 / 62156 ... creating path file for vertex 35501 / 62156 ... creating path file for vertex 35601 / 62156 ... creating path file for vertex 35701 / 62156 ... creating path file for vertex 35801 / 62156 ... creating path file for vertex 35901 / 62156 ... creating path file for vertex 36001 / 62156 ... creating path file for vertex 36101 / 62156 ... creating path file for vertex 36201 / 62156 ... creating path file for vertex 36301 / 62156 ... creating path file for vertex 36401 / 62156 ... creating path file for vertex 36501 / 62156 ... creating path file for vertex 36601 / 62156 ... creating path file for vertex 36701 / 62156 ... creating path file for vertex 36801 / 62156 ... creating path file for vertex 36901 / 62156 ... creating path file for vertex 37001 / 62156 ... creating path file for vertex 37101 / 62156 ... creating path file for vertex 37201 / 62156 ... creating path file for vertex 37301 / 62156 ... creating path file for vertex 37401 / 62156 ... creating path file for vertex 37501 / 62156 ... creating path file for vertex 37601 / 62156 ... creating path file for vertex 37701 / 62156 ... creating path file for vertex 37801 / 62156 ... creating path file for vertex 37901 / 62156 ... creating path file for vertex 38001 / 62156 ... creating path file for vertex 38101 / 62156 ... creating path file for vertex 38201 / 62156 ... creating path file for vertex 38301 / 62156 ... creating path file for vertex 38401 / 62156 ... creating path file for vertex 38501 / 62156 ... creating path file for vertex 38601 / 62156 ... creating path file for vertex 38701 / 62156 ... creating path file for vertex 38801 / 62156 ... creating path file for vertex 38901 / 62156 ... creating path file for vertex 39001 / 62156 ... creating path file for vertex 39101 / 62156 ... creating path file for vertex 39201 / 62156 ... creating path file for vertex 39301 / 62156 ... creating path file for vertex 39401 / 62156 ... creating path file for vertex 39501 / 62156 ... creating path file for vertex 39601 / 62156 ... creating path file for vertex 39701 / 62156 ... creating path file for vertex 39801 / 62156 ... creating path file for vertex 39901 / 62156 ... creating path file for vertex 40001 / 62156 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 62156 ... creating path file for vertex 40201 / 62156 ... creating path file for vertex 40301 / 62156 ... creating path file for vertex 40401 / 62156 ... creating path file for vertex 40501 / 62156 ... creating path file for vertex 40601 / 62156 ... creating path file for vertex 40701 / 62156 ... creating path file for vertex 40801 / 62156 ... creating path file for vertex 40901 / 62156 ... creating path file for vertex 41001 / 62156 ... creating path file for vertex 41101 / 62156 ... creating path file for vertex 41201 / 62156 ... creating path file for vertex 41301 / 62156 ... creating path file for vertex 41401 / 62156 ... creating path file for vertex 41501 / 62156 ... creating path file for vertex 41601 / 62156 ... creating path file for vertex 41701 / 62156 ... creating path file for vertex 41801 / 62156 ... creating path file for vertex 41901 / 62156 ... creating path file for vertex 42001 / 62156 ... creating path file for vertex 42101 / 62156 ... creating path file for vertex 42201 / 62156 ... creating path file for vertex 42301 / 62156 ... creating path file for vertex 42401 / 62156 ... creating path file for vertex 42501 / 62156 ... creating path file for vertex 42601 / 62156 ... creating path file for vertex 42701 / 62156 ... creating path file for vertex 42801 / 62156 ... creating path file for vertex 42901 / 62156 ... creating path file for vertex 43001 / 62156 ... creating path file for vertex 43101 / 62156 ... creating path file for vertex 43201 / 62156 ... creating path file for vertex 43301 / 62156 ... creating path file for vertex 43401 / 62156 ... creating path file for vertex 43501 / 62156 ... creating path file for vertex 43601 / 62156 ... creating path file for vertex 43701 / 62156 ... creating path file for vertex 43801 / 62156 ... creating path file for vertex 43901 / 62156 ... creating path file for vertex 44001 / 62156 ... creating path file for vertex 44101 / 62156 ... creating path file for vertex 44201 / 62156 ... creating path file for vertex 44301 / 62156 ... creating path file for vertex 44401 / 62156 ... creating path file for vertex 44501 / 62156 ... creating path file for vertex 44601 / 62156 ... creating path file for vertex 44701 / 62156 ... creating path file for vertex 44801 / 62156 ... creating path file for vertex 44901 / 62156 ... creating path file for vertex 45001 / 62156 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 62156 ... creating path file for vertex 45201 / 62156 ... creating path file for vertex 45301 / 62156 ... creating path file for vertex 45401 / 62156 ... creating path file for vertex 45501 / 62156 ... creating path file for vertex 45601 / 62156 ... creating path file for vertex 45701 / 62156 ... creating path file for vertex 45801 / 62156 ... creating path file for vertex 45901 / 62156 ... creating path file for vertex 46001 / 62156 ... creating path file for vertex 46101 / 62156 ... creating path file for vertex 46201 / 62156 ... creating path file for vertex 46301 / 62156 ... creating path file for vertex 46401 / 62156 ... creating path file for vertex 46501 / 62156 ... creating path file for vertex 46601 / 62156 ... creating path file for vertex 46701 / 62156 ... creating path file for vertex 46801 / 62156 ... creating path file for vertex 46901 / 62156 ... creating path file for vertex 47001 / 62156 ... creating path file for vertex 47101 / 62156 ... creating path file for vertex 47201 / 62156 ... creating path file for vertex 47301 / 62156 ... creating path file for vertex 47401 / 62156 ... creating path file for vertex 47501 / 62156 ... creating path file for vertex 47601 / 62156 ... creating path file for vertex 47701 / 62156 ... creating path file for vertex 47801 / 62156 ... creating path file for vertex 47901 / 62156 ... creating path file for vertex 48001 / 62156 ... creating path file for vertex 48101 / 62156 ... creating path file for vertex 48201 / 62156 ... creating path file for vertex 48301 / 62156 ... creating path file for vertex 48401 / 62156 ... creating path file for vertex 48501 / 62156 ... creating path file for vertex 48601 / 62156 ... creating path file for vertex 48701 / 62156 ... creating path file for vertex 48801 / 62156 ... creating path file for vertex 48901 / 62156 ... creating path file for vertex 49001 / 62156 ... creating path file for vertex 49101 / 62156 ... creating path file for vertex 49201 / 62156 ... creating path file for vertex 49301 / 62156 ... creating path file for vertex 49401 / 62156 ... creating path file for vertex 49501 / 62156 ... creating path file for vertex 49601 / 62156 ... creating path file for vertex 49701 / 62156 ... creating path file for vertex 49801 / 62156 ... creating path file for vertex 49901 / 62156 ... creating path file for vertex 50001 / 62156 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 62156 ... creating path file for vertex 50201 / 62156 ... creating path file for vertex 50301 / 62156 ... creating path file for vertex 50401 / 62156 ... creating path file for vertex 50501 / 62156 ... creating path file for vertex 50601 / 62156 ... creating path file for vertex 50701 / 62156 ... creating path file for vertex 50801 / 62156 ... creating path file for vertex 50901 / 62156 ... creating path file for vertex 51001 / 62156 ... creating path file for vertex 51101 / 62156 ... creating path file for vertex 51201 / 62156 ... creating path file for vertex 51301 / 62156 ... creating path file for vertex 51401 / 62156 ... creating path file for vertex 51501 / 62156 ... creating path file for vertex 51601 / 62156 ... creating path file for vertex 51701 / 62156 ... creating path file for vertex 51801 / 62156 ... creating path file for vertex 51901 / 62156 ... creating path file for vertex 52001 / 62156 ... creating path file for vertex 52101 / 62156 ... creating path file for vertex 52201 / 62156 ... creating path file for vertex 52301 / 62156 ... creating path file for vertex 52401 / 62156 ... creating path file for vertex 52501 / 62156 ... creating path file for vertex 52601 / 62156 ... creating path file for vertex 52701 / 62156 ... creating path file for vertex 52801 / 62156 ... creating path file for vertex 52901 / 62156 ... creating path file for vertex 53001 / 62156 ... creating path file for vertex 53101 / 62156 ... creating path file for vertex 53201 / 62156 ... creating path file for vertex 53301 / 62156 ... creating path file for vertex 53401 / 62156 ... creating path file for vertex 53501 / 62156 ... creating path file for vertex 53601 / 62156 ... creating path file for vertex 53701 / 62156 ... creating path file for vertex 53801 / 62156 ... creating path file for vertex 53901 / 62156 ... creating path file for vertex 54001 / 62156 ... creating path file for vertex 54101 / 62156 ... creating path file for vertex 54201 / 62156 ... creating path file for vertex 54301 / 62156 ... creating path file for vertex 54401 / 62156 ... creating path file for vertex 54501 / 62156 ... creating path file for vertex 54601 / 62156 ... creating path file for vertex 54701 / 62156 ... creating path file for vertex 54801 / 62156 ... creating path file for vertex 54901 / 62156 ... creating path file for vertex 55001 / 62156 area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 62156 ... creating path file for vertex 55201 / 62156 ... creating path file for vertex 55301 / 62156 ... creating path file for vertex 55401 / 62156 ... creating path file for vertex 55501 / 62156 ... creating path file for vertex 55601 / 62156 ... creating path file for vertex 55701 / 62156 ... creating path file for vertex 55801 / 62156 ... creating path file for vertex 55901 / 62156 ... creating path file for vertex 56001 / 62156 ... creating path file for vertex 56101 / 62156 ... creating path file for vertex 56201 / 62156 ... creating path file for vertex 56301 / 62156 ... creating path file for vertex 56401 / 62156 ... creating path file for vertex 56501 / 62156 ... creating path file for vertex 56601 / 62156 ... creating path file for vertex 56701 / 62156 ... creating path file for vertex 56801 / 62156 ... creating path file for vertex 56901 / 62156 ... creating path file for vertex 57001 / 62156 ... creating path file for vertex 57101 / 62156 ... creating path file for vertex 57201 / 62156 ... creating path file for vertex 57301 / 62156 ... creating path file for vertex 57401 / 62156 ... creating path file for vertex 57501 / 62156 ... creating path file for vertex 57601 / 62156 ... creating path file for vertex 57701 / 62156 ... creating path file for vertex 57801 / 62156 ... creating path file for vertex 57901 / 62156 ... creating path file for vertex 58001 / 62156 ... creating path file for vertex 58101 / 62156 ... creating path file for vertex 58201 / 62156 ... creating path file for vertex 58301 / 62156 ... creating path file for vertex 58401 / 62156 ... creating path file for vertex 58501 / 62156 ... creating path file for vertex 58601 / 62156 ... creating path file for vertex 58701 / 62156 ... creating path file for vertex 58801 / 62156 ... creating path file for vertex 58901 / 62156 ... creating path file for vertex 59001 / 62156 ... creating path file for vertex 59101 / 62156 ... creating path file for vertex 59201 / 62156 ... creating path file for vertex 59301 / 62156 ... creating path file for vertex 59401 / 62156 ... creating path file for vertex 59501 / 62156 ... creating path file for vertex 59601 / 62156 ... creating path file for vertex 59701 / 62156 ... creating path file for vertex 59801 / 62156 ... creating path file for vertex 59901 / 62156 ... creating path file for vertex 60001 / 62156 area file for outer ROIs saved at 60001 ... creating path file for vertex 60101 / 62156 ... creating path file for vertex 60201 / 62156 ... creating path file for vertex 60301 / 62156 ... creating path file for vertex 60401 / 62156 ... creating path file for vertex 60501 / 62156 ... creating path file for vertex 60601 / 62156 ... creating path file for vertex 60701 / 62156 ... creating path file for vertex 60801 / 62156 ... creating path file for vertex 60901 / 62156 ... creating path file for vertex 61001 / 62156 ... creating path file for vertex 61101 / 62156 ... creating path file for vertex 61201 / 62156 ... creating path file for vertex 61301 / 62156 ... creating path file for vertex 61401 / 62156 ... creating path file for vertex 61501 / 62156 ... creating path file for vertex 61601 / 62156 ... creating path file for vertex 61701 / 62156 ... creating path file for vertex 61801 / 62156 ... creating path file for vertex 61901 / 62156 ... creating path file for vertex 62001 / 62156 ... creating path file for vertex 62101 / 62156 saving area file in matlab format... DONE. deltaT = 5.8372e+03 ================= mri_path2label --confillxfn lh.pial /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input ================= Reading lh.pial Connecting and filling vertices in path at fillseed 69 Finding path........................................................................................................................................................................................................................ done Filling 69 nlabel 6276 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000001.label Connecting and filling vertices in path at fillseed 170 Finding path...................................................................................................................................................................................................................................................... done Filling 170 nlabel 6135 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000101.label Connecting and filling vertices in path at fillseed 126249 Finding path.............................................................................................................................................................................................................. done Filling 126249 nlabel 6900 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000201.label Connecting and filling vertices in path at fillseed 116859 Finding path............................................................................................................................................................................................................... done Filling 116859 nlabel 6671 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000301.label Connecting and filling vertices in path at fillseed 238 Finding path............................................................................................................................ done Filling 238 nlabel 5614 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000401.label Connecting and filling vertices in path at fillseed 484 Finding path................................................................................................................................................................................................................................................................................ done Filling 484 nlabel 6690 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000501.label Connecting and filling vertices in path at fillseed 380 Finding path.................................................................................................................................. done Filling 380 nlabel 5673 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000601.label Connecting and filling vertices in path at fillseed 708 Finding path............................................................................................................................................................................................................................................................................... done Filling 708 nlabel 7267 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000701.label Connecting and filling vertices in path at fillseed 524 Finding path........................................................................................................................................ done Filling 524 nlabel 5635 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000801.label Connecting and filling vertices in path at fillseed 584 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 584 nlabel 7700 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000901.label Connecting and filling vertices in path at fillseed 116855 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 116855 nlabel 6830 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001001.label Connecting and filling vertices in path at fillseed 935 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 935 nlabel 6603 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001101.label Connecting and filling vertices in path at fillseed 797 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 797 nlabel 8937 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001201.label Connecting and filling vertices in path at fillseed 925 Finding path............................................................................................................................................................................................................................................................................... done Filling 925 nlabel 7146 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001301.label Connecting and filling vertices in path at fillseed 695 Finding path............................................................................................................................................................ done Filling 695 nlabel 5249 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001401.label Connecting and filling vertices in path at fillseed 2043 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 2043 nlabel 6479 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001501.label Connecting and filling vertices in path at fillseed 1027 Finding path......................................................................................................................................................................................... done Filling 1027 nlabel 5937 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001601.label Connecting and filling vertices in path at fillseed 1669 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 1669 nlabel 10008 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001701.label Connecting and filling vertices in path at fillseed 1152 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 1152 nlabel 7034 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001801.label Connecting and filling vertices in path at fillseed 1553 Finding path............................................................................................................................................................................................................................................ done Filling 1553 nlabel 5488 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001901.label Connecting and filling vertices in path at fillseed 2313 Finding path................................................................................................................................... done Filling 2313 nlabel 5503 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002001.label Connecting and filling vertices in path at fillseed 2492 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 2492 nlabel 7067 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002101.label Connecting and filling vertices in path at fillseed 1616 Finding path.................................................................................................................................................. done Filling 1616 nlabel 5878 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002201.label Connecting and filling vertices in path at fillseed 116759 Finding path....................................................................................................................... done Filling 116759 nlabel 5450 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002301.label Connecting and filling vertices in path at fillseed 2921 Finding path................................................................................................................................................................................................................................Launching updater executable ............................................................................................................. done Filling 2921 nlabel 7743 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002401.label Connecting and filling vertices in path at fillseed 1966 Finding path................................................................................................................................................. done Filling 1966 nlabel 5295 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002501.label Connecting and filling vertices in path at fillseed 106599 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106599 nlabel 8797 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002601.label Connecting and filling vertices in path at fillseed 1645 Finding path........................................................................................................................................................................................................... done Filling 1645 nlabel 5888 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002701.label Connecting and filling vertices in path at fillseed 119288 Finding path.................................................................................................................................................. done Filling 119288 nlabel 5626 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002801.label Connecting and filling vertices in path at fillseed 2698 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 2698 nlabel 7169 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002901.label Connecting and filling vertices in path at fillseed 2371 Finding path......................................................................................................................................... done Filling 2371 nlabel 5167 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003001.label Connecting and filling vertices in path at fillseed 3433 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 3433 nlabel 7776 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003101.label Connecting and filling vertices in path at fillseed 3561 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3561 nlabel 7956 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003201.label Connecting and filling vertices in path at fillseed 3501 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 3501 nlabel 7136 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003301.label Connecting and filling vertices in path at fillseed 3419 Finding path.............................................................................................................................................................................................................................................................................. done Filling 3419 nlabel 9342 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003401.label Connecting and filling vertices in path at fillseed 2872 Finding path.................................................................................................................................................................................................. done Filling 2872 nlabel 5671 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003501.label Connecting and filling vertices in path at fillseed 4702 Finding path............................................................................................................................................................................................................................................................................................... done Filling 4702 nlabel 8496 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003601.label Connecting and filling vertices in path at fillseed 5144 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 5144 nlabel 9917 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003701.label Connecting and filling vertices in path at fillseed 5110 Finding path................................................................................................................................................................................................................................................................................................ done Filling 5110 nlabel 9368 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003801.label Connecting and filling vertices in path at fillseed 3405 Finding path................................................................................................................................................................................................... done Filling 3405 nlabel 5853 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003901.label Connecting and filling vertices in path at fillseed 4916 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4916 nlabel 7893 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004001.label Connecting and filling vertices in path at fillseed 5134 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 5134 nlabel 9062 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004101.label Connecting and filling vertices in path at fillseed 5773 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 5773 nlabel 9372 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004201.label Connecting and filling vertices in path at fillseed 4428 Finding path...................................................................................................................................................................................................... done Filling 4428 nlabel 5859 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004301.label Connecting and filling vertices in path at fillseed 4738 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 4738 nlabel 8369 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004401.label Connecting and filling vertices in path at fillseed 107056 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107056 nlabel 8408 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004501.label Connecting and filling vertices in path at fillseed 5763 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 5763 nlabel 8849 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004601.label Connecting and filling vertices in path at fillseed 4974 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 4974 nlabel 7157 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004701.label Connecting and filling vertices in path at fillseed 4930 Finding path................................................................................................................................................... done Filling 4930 nlabel 5372 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004801.label Connecting and filling vertices in path at fillseed 7149 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 7149 nlabel 9108 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004901.label Connecting and filling vertices in path at fillseed 114411 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114411 nlabel 8286 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005001.label Connecting and filling vertices in path at fillseed 5869 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 5869 nlabel 9120 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005101.label Connecting and filling vertices in path at fillseed 7191 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 7191 nlabel 7643 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005201.label Connecting and filling vertices in path at fillseed 5071 Finding path............................................................................................................................................................................. done Filling 5071 nlabel 6459 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005301.label Connecting and filling vertices in path at fillseed 6515 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 6515 nlabel 9589 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005401.label Connecting and filling vertices in path at fillseed 115635 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 115635 nlabel 8787 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005501.label Connecting and filling vertices in path at fillseed 112878 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 112878 nlabel 8386 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005601.label Connecting and filling vertices in path at fillseed 5741 Finding path.................................................................................................................................................................................................................. done Filling 5741 nlabel 6160 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005701.label Connecting and filling vertices in path at fillseed 6663 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6663 nlabel 10997 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005801.label Connecting and filling vertices in path at fillseed 8615 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 8615 nlabel 8994 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005901.label Connecting and filling vertices in path at fillseed 9279 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 9279 nlabel 8179 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006001.label Connecting and filling vertices in path at fillseed 6398 Finding path..................................................................................................................................................................................................................... done Filling 6398 nlabel 7731 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006101.label Connecting and filling vertices in path at fillseed 8022 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 8022 nlabel 10529 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006201.label Connecting and filling vertices in path at fillseed 9778 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 9778 nlabel 9540 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006301.label Connecting and filling vertices in path at fillseed 8180 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 8180 nlabel 8765 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006401.label Connecting and filling vertices in path at fillseed 11674 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 11674 nlabel 7513 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006501.label Connecting and filling vertices in path at fillseed 10094 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 10094 nlabel 7782 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006601.label Connecting and filling vertices in path at fillseed 9771 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 9771 nlabel 9095 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006701.label Connecting and filling vertices in path at fillseed 8924 Finding path................................................................................................................................................................................................................................................. done Filling 8924 nlabel 7577 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006801.label Connecting and filling vertices in path at fillseed 7843 Finding path....................................................................................................................................................................................... done Filling 7843 nlabel 7265 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006901.label Connecting and filling vertices in path at fillseed 10834 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 10834 nlabel 7474 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007001.label Connecting and filling vertices in path at fillseed 9229 Finding path................................................................................................................................................................................................................................ done Filling 9229 nlabel 7891 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007101.label Connecting and filling vertices in path at fillseed 8940 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 8940 nlabel 8528 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007201.label Connecting and filling vertices in path at fillseed 113397 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 113397 nlabel 7668 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007301.label Connecting and filling vertices in path at fillseed 12464 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 12464 nlabel 7264 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007401.label Connecting and filling vertices in path at fillseed 11735 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 11735 nlabel 7753 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007501.label Connecting and filling vertices in path at fillseed 8940 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 8940 nlabel 8398 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007601.label Connecting and filling vertices in path at fillseed 116845 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 116845 nlabel 9406 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007701.label Connecting and filling vertices in path at fillseed 12462 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 12462 nlabel 6496 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007801.label Connecting and filling vertices in path at fillseed 11601 Finding path........................................................................................................................................................................................................................................................................................... done Filling 11601 nlabel 7702 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007901.label Connecting and filling vertices in path at fillseed 10622 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 10622 nlabel 9446 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008001.label Connecting and filling vertices in path at fillseed 12227 Finding path.................................................................................................................................................................................................................................................................................... done Filling 12227 nlabel 9288 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008101.label Connecting and filling vertices in path at fillseed 118130 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 118130 nlabel 7451 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008201.label Connecting and filling vertices in path at fillseed 11619 Finding path................................................................................................................................................................................................................................................................... done Filling 11619 nlabel 7554 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008301.label Connecting and filling vertices in path at fillseed 10529 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 10529 nlabel 9438 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008401.label Connecting and filling vertices in path at fillseed 12277 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 12277 nlabel 9507 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008501.label Connecting and filling vertices in path at fillseed 13272 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 13272 nlabel 7118 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008601.label Connecting and filling vertices in path at fillseed 13230 Finding path........................................................................................................................................................................................................................................ done Filling 13230 nlabel 8062 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008701.label Connecting and filling vertices in path at fillseed 11438 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 11438 nlabel 9933 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008801.label Connecting and filling vertices in path at fillseed 10008 Finding path............................................................................................................................................................................................... done Filling 10008 nlabel 6427 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008901.label Connecting and filling vertices in path at fillseed 109541 Finding path........................................................................................................................................................................................................................................................... done Filling 109541 nlabel 7307 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009001.label Connecting and filling vertices in path at fillseed 13232 Finding path...................................................................................................................................................................................................................................................................... done Filling 13232 nlabel 8164 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009101.label Connecting and filling vertices in path at fillseed 15617 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 15617 nlabel 8974 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009201.label Connecting and filling vertices in path at fillseed 13127 Finding path.............................................................................................................................................................................................................................................................................. done Filling 13127 nlabel 8102 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009301.label Connecting and filling vertices in path at fillseed 14181 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 14181 nlabel 7557 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009401.label Connecting and filling vertices in path at fillseed 14287 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 14287 nlabel 11326 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009501.label Connecting and filling vertices in path at fillseed 13640 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 13640 nlabel 9100 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009601.label Connecting and filling vertices in path at fillseed 15433 Finding path....................................................................................................................................................................................................................................................... done Filling 15433 nlabel 8240 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009701.label Connecting and filling vertices in path at fillseed 13277 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 13277 nlabel 7001 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009801.label Connecting and filling vertices in path at fillseed 12500 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 12500 nlabel 10625 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009901.label Connecting and filling vertices in path at fillseed 14934 Finding path.......................................................................................................................................................................................................................................... done Filling 14934 nlabel 8121 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010001.label Connecting and filling vertices in path at fillseed 14396 Finding path....................................................................................................................................................................................................................................................... done Filling 14396 nlabel 7364 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010101.label Connecting and filling vertices in path at fillseed 9991 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 9991 nlabel 8293 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010201.label Connecting and filling vertices in path at fillseed 13319 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13319 nlabel 11250 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010301.label Connecting and filling vertices in path at fillseed 16222 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 16222 nlabel 7667 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010401.label Connecting and filling vertices in path at fillseed 16877 Finding path...................................................................................................................................................................................................................................................................................................................... done Filling 16877 nlabel 7603 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010501.label Connecting and filling vertices in path at fillseed 106693 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 106693 nlabel 8524 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010601.label Connecting and filling vertices in path at fillseed 15163 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15163 nlabel 10902 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010701.label Connecting and filling vertices in path at fillseed 15379 Finding path............................................................................................................................................................................................................................................................................. done Filling 15379 nlabel 7674 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010801.label Connecting and filling vertices in path at fillseed 15296 Finding path.................................................................................................................................................................................................................................................................... done Filling 15296 nlabel 7366 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010901.label Connecting and filling vertices in path at fillseed 15074 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 15074 nlabel 7356 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011001.label Connecting and filling vertices in path at fillseed 19364 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 19364 nlabel 10714 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011101.label Connecting and filling vertices in path at fillseed 16717 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 16717 nlabel 10105 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011201.label Connecting and filling vertices in path at fillseed 16171 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16171 nlabel 8321 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011301.label Connecting and filling vertices in path at fillseed 115118 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 115118 nlabel 6385 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011401.label Connecting and filling vertices in path at fillseed 19366 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 19366 nlabel 11237 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011501.label Connecting and filling vertices in path at fillseed 17570 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17570 nlabel 10782 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011601.label Connecting and filling vertices in path at fillseed 126615 Finding path.......................................................................................................................................................................................................................................... done Filling 126615 nlabel 7793 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011701.label Connecting and filling vertices in path at fillseed 15885 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 15885 nlabel 8280 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011801.label Connecting and filling vertices in path at fillseed 14243 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 14243 nlabel 11053 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011901.label Connecting and filling vertices in path at fillseed 21798 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 21798 nlabel 10455 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012001.label Connecting and filling vertices in path at fillseed 19751 Finding path............................................................................................................................................................................................................................................ done Filling 19751 nlabel 8296 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012101.label Connecting and filling vertices in path at fillseed 20159 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 20159 nlabel 6985 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012201.label Connecting and filling vertices in path at fillseed 21118 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21118 nlabel 11129 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012301.label Connecting and filling vertices in path at fillseed 21836 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 21836 nlabel 10462 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012401.label Connecting and filling vertices in path at fillseed 20625 Finding path................................................................................................................................................................................................................................................ done Filling 20625 nlabel 8139 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012501.label Connecting and filling vertices in path at fillseed 21053 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21053 nlabel 6451 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012601.label Connecting and filling vertices in path at fillseed 17665 Finding path................................................................................................................................................................................................................................................................... done Filling 17665 nlabel 8430 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012701.label Connecting and filling vertices in path at fillseed 21254 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 21254 nlabel 11242 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012801.label Connecting and filling vertices in path at fillseed 21743 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 21743 nlabel 10190 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012901.label Connecting and filling vertices in path at fillseed 21073 Finding path..................................................................................................................................................................................................................... done Filling 21073 nlabel 5288 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013001.label Connecting and filling vertices in path at fillseed 22937 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22937 nlabel 10294 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013101.label Connecting and filling vertices in path at fillseed 22216 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22216 nlabel 10660 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013201.label Connecting and filling vertices in path at fillseed 23035 Finding path...................................................................................................................................................................................................... done Filling 23035 nlabel 6070 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013301.label Connecting and filling vertices in path at fillseed 18450 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 18450 nlabel 8530 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013401.label Connecting and filling vertices in path at fillseed 22987 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 22987 nlabel 10300 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013501.label Connecting and filling vertices in path at fillseed 23202 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23202 nlabel 9649 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013601.label Connecting and filling vertices in path at fillseed 21380 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21380 nlabel 7562 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013701.label Connecting and filling vertices in path at fillseed 18431 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 18431 nlabel 8365 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013801.label Connecting and filling vertices in path at fillseed 24844 Finding path.................................................................................................................................................................................................................................. done Filling 24844 nlabel 8914 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013901.label Connecting and filling vertices in path at fillseed 24845 Finding path............................................................................................................................................................................................................................................ done Filling 24845 nlabel 7389 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014001.label Connecting and filling vertices in path at fillseed 24700 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24700 nlabel 10536 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014101.label Connecting and filling vertices in path at fillseed 105839 Finding path..................................................................................................................................................................................................................................................... done Filling 105839 nlabel 5286 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014201.label Connecting and filling vertices in path at fillseed 24891 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24891 nlabel 9182 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014301.label Connecting and filling vertices in path at fillseed 24874 Finding path.................................................................................................................................................................................................................................... done Filling 24874 nlabel 7464 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014401.label Connecting and filling vertices in path at fillseed 26328 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 26328 nlabel 9780 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014501.label Connecting and filling vertices in path at fillseed 22741 Finding path.............................................................................................................................................................................................................................................................................................................................................................................. done Filling 22741 nlabel 7659 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014601.label Connecting and filling vertices in path at fillseed 25808 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25808 nlabel 8136 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014701.label Connecting and filling vertices in path at fillseed 24857 Finding path.............................................................................................................................................................................................................................................. done Filling 24857 nlabel 7502 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014801.label Connecting and filling vertices in path at fillseed 23397 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 23397 nlabel 8133 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014901.label Connecting and filling vertices in path at fillseed 23689 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23689 nlabel 8247 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015001.label Connecting and filling vertices in path at fillseed 24877 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 24877 nlabel 9947 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015101.label Connecting and filling vertices in path at fillseed 25793 Finding path......................................................................................................................................................................................................................................... done Filling 25793 nlabel 7359 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015201.label Connecting and filling vertices in path at fillseed 28979 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28979 nlabel 9972 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015301.label Connecting and filling vertices in path at fillseed 26871 Finding path....................................................................................................................................................................................... done Filling 26871 nlabel 6192 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015401.label Connecting and filling vertices in path at fillseed 24885 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 24885 nlabel 10206 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015501.label Connecting and filling vertices in path at fillseed 26762 Finding path........................................................................................................................................................................................................................ done Filling 26762 nlabel 7451 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015601.label Connecting and filling vertices in path at fillseed 123383 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 123383 nlabel 10091 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015701.label Connecting and filling vertices in path at fillseed 27366 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 27366 nlabel 8196 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015801.label Connecting and filling vertices in path at fillseed 27643 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 27643 nlabel 6937 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015901.label Connecting and filling vertices in path at fillseed 25956 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25956 nlabel 10667 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016001.label Connecting and filling vertices in path at fillseed 29116 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29116 nlabel 9948 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016101.label Connecting and filling vertices in path at fillseed 28586 Finding path..................................................................................................................................................................... done Filling 28586 nlabel 6402 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016201.label Connecting and filling vertices in path at fillseed 27642 Finding path.............................................................................................................................................................................................................................................. done Filling 27642 nlabel 5710 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016301.label Connecting and filling vertices in path at fillseed 108144 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 108144 nlabel 9652 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016401.label Connecting and filling vertices in path at fillseed 28391 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28391 nlabel 8920 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016501.label Connecting and filling vertices in path at fillseed 29486 Finding path.................................................................................................................................................... done Filling 29486 nlabel 6441 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016601.label Connecting and filling vertices in path at fillseed 115667 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 115667 nlabel 9104 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016701.label Connecting and filling vertices in path at fillseed 26835 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 26835 nlabel 9985 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016801.label Connecting and filling vertices in path at fillseed 31991 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 31991 nlabel 7468 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016901.label Connecting and filling vertices in path at fillseed 110868 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110868 nlabel 11457 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017001.label Connecting and filling vertices in path at fillseed 30215 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 30215 nlabel 5463 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017101.label Connecting and filling vertices in path at fillseed 30149 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 30149 nlabel 8148 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017201.label Connecting and filling vertices in path at fillseed 32015 Finding path.................................................................................................................................................................................................................. done Filling 32015 nlabel 7290 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017301.label Connecting and filling vertices in path at fillseed 117546 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 117546 nlabel 10781 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017401.label Connecting and filling vertices in path at fillseed 29022 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29022 nlabel 8304 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017501.label Connecting and filling vertices in path at fillseed 27671 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27671 nlabel 10929 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017601.label Connecting and filling vertices in path at fillseed 29506 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 29506 nlabel 9373 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017701.label Connecting and filling vertices in path at fillseed 30882 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 30882 nlabel 10185 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017801.label Connecting and filling vertices in path at fillseed 29900 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 29900 nlabel 7876 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017901.label Connecting and filling vertices in path at fillseed 31957 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 31957 nlabel 7919 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018001.label Connecting and filling vertices in path at fillseed 32986 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 32986 nlabel 7691 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018101.label Connecting and filling vertices in path at fillseed 34358 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 34358 nlabel 7031 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018201.label Connecting and filling vertices in path at fillseed 125542 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 125542 nlabel 7558 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018301.label Connecting and filling vertices in path at fillseed 115334 Finding path........................................................................................................................................................................................................................................................ done Filling 115334 nlabel 6614 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018401.label Connecting and filling vertices in path at fillseed 36086 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 36086 nlabel 10154 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018501.label Connecting and filling vertices in path at fillseed 33973 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33973 nlabel 7235 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018601.label Connecting and filling vertices in path at fillseed 38258 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38258 nlabel 6384 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018701.label Connecting and filling vertices in path at fillseed 32775 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 32775 nlabel 9688 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018801.label Connecting and filling vertices in path at fillseed 31975 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 31975 nlabel 7141 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018901.label Connecting and filling vertices in path at fillseed 32149 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 32149 nlabel 9023 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019001.label Connecting and filling vertices in path at fillseed 118232 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 118232 nlabel 10945 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019101.label Connecting and filling vertices in path at fillseed 31658 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 31658 nlabel 6270 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019201.label Connecting and filling vertices in path at fillseed 34049 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 34049 nlabel 10276 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019301.label Connecting and filling vertices in path at fillseed 38014 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38014 nlabel 9787 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019401.label Connecting and filling vertices in path at fillseed 37712 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37712 nlabel 9160 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019501.label Connecting and filling vertices in path at fillseed 38266 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 38266 nlabel 6600 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019601.label Connecting and filling vertices in path at fillseed 32900 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 32900 nlabel 9572 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019701.label Connecting and filling vertices in path at fillseed 32976 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 32976 nlabel 8028 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019801.label Connecting and filling vertices in path at fillseed 125974 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 125974 nlabel 8942 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019901.label Connecting and filling vertices in path at fillseed 38339 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 38339 nlabel 6912 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020001.label Connecting and filling vertices in path at fillseed 35825 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35825 nlabel 9774 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020101.label Connecting and filling vertices in path at fillseed 37960 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37960 nlabel 10049 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020201.label Connecting and filling vertices in path at fillseed 36746 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 36746 nlabel 8842 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020301.label Connecting and filling vertices in path at fillseed 39230 Finding path.................................................................................................................................................................... done Filling 39230 nlabel 6820 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020401.label Connecting and filling vertices in path at fillseed 35824 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 35824 nlabel 9197 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020501.label Connecting and filling vertices in path at fillseed 38758 Finding path............................................................................................................................................................................................................................................................................. done Filling 38758 nlabel 7684 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020601.label Connecting and filling vertices in path at fillseed 34255 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 34255 nlabel 9096 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020701.label Connecting and filling vertices in path at fillseed 38841 Finding path........................................................................................................................................................................................................................................... done Filling 38841 nlabel 5784 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020801.label Connecting and filling vertices in path at fillseed 122595 Finding path............................................................................................................................................................................................................................................................... done Filling 122595 nlabel 5916 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020901.label Connecting and filling vertices in path at fillseed 115536 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 115536 nlabel 10341 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021001.label Connecting and filling vertices in path at fillseed 40785 Finding path........................................................................................................................................................................................................... done Filling 40785 nlabel 6464 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021101.label Connecting and filling vertices in path at fillseed 36544 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36544 nlabel 11032 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021201.label Connecting and filling vertices in path at fillseed 38007 Finding path............................................................................................................................................................................................................................................................ done Filling 38007 nlabel 6838 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021301.label Connecting and filling vertices in path at fillseed 38817 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38817 nlabel 9433 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021401.label Connecting and filling vertices in path at fillseed 113024 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113024 nlabel 11126 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021501.label Connecting and filling vertices in path at fillseed 125631 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 125631 nlabel 10622 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021601.label Connecting and filling vertices in path at fillseed 37194 Finding path................................................................................................................................................................................................ done Filling 37194 nlabel 6458 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021701.label Connecting and filling vertices in path at fillseed 36823 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36823 nlabel 9899 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021801.label Connecting and filling vertices in path at fillseed 41730 Finding path.................................................................................................................................................................................................................. done Filling 41730 nlabel 6709 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021901.label Connecting and filling vertices in path at fillseed 40652 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 40652 nlabel 8035 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022001.label Connecting and filling vertices in path at fillseed 37194 Finding path...................................................................................................................................................................................... done Filling 37194 nlabel 6442 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022101.label Connecting and filling vertices in path at fillseed 42602 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42602 nlabel 9542 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022201.label Connecting and filling vertices in path at fillseed 41954 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41954 nlabel 10599 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022301.label Connecting and filling vertices in path at fillseed 110777 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110777 nlabel 9771 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022401.label Connecting and filling vertices in path at fillseed 41437 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 41437 nlabel 7552 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022501.label Connecting and filling vertices in path at fillseed 37780 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37780 nlabel 9923 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022601.label Connecting and filling vertices in path at fillseed 41917 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 41917 nlabel 10978 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022701.label Connecting and filling vertices in path at fillseed 42346 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42346 nlabel 11150 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022801.label Connecting and filling vertices in path at fillseed 43925 Finding path........................................................................................................................................................................................................................................... done Filling 43925 nlabel 6491 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022901.label Connecting and filling vertices in path at fillseed 42755 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 42755 nlabel 10097 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023001.label Connecting and filling vertices in path at fillseed 125036 Finding path.................................................................................................................................................................................................. done Filling 125036 nlabel 6361 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023101.label Connecting and filling vertices in path at fillseed 42180 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42180 nlabel 8620 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023201.label Connecting and filling vertices in path at fillseed 44760 Finding path............................................................................................................................................................................................................. done Filling 44760 nlabel 7079 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023301.label Connecting and filling vertices in path at fillseed 122060 Finding path............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 122060 nlabel 9072 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023401.label Connecting and filling vertices in path at fillseed 45560 Finding path............................................................................................................................................................................................................................................................................... done Filling 45560 nlabel 6311 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023501.label Connecting and filling vertices in path at fillseed 44983 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44983 nlabel 9113 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023601.label Connecting and filling vertices in path at fillseed 47777 Finding path........................................................................................................................................................................................................ done Filling 47777 nlabel 6459 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023701.label Connecting and filling vertices in path at fillseed 44464 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44464 nlabel 9667 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023801.label Connecting and filling vertices in path at fillseed 41828 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41828 nlabel 11906 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023901.label Connecting and filling vertices in path at fillseed 42667 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 42667 nlabel 8320 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024001.label Connecting and filling vertices in path at fillseed 125783 Finding path........................................................................................................................................................................................... done Filling 125783 nlabel 6609 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024101.label Connecting and filling vertices in path at fillseed 41739 Finding path................................................................................................................................................................................................................................................................................................ done Filling 41739 nlabel 7319 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024201.label Connecting and filling vertices in path at fillseed 47509 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47509 nlabel 12208 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024301.label Connecting and filling vertices in path at fillseed 49369 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49369 nlabel 8543 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024401.label Connecting and filling vertices in path at fillseed 46533 Finding path............................................................................................................................................................... done Filling 46533 nlabel 6075 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024501.label Connecting and filling vertices in path at fillseed 47173 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47173 nlabel 8078 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024601.label Connecting and filling vertices in path at fillseed 43753 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 43753 nlabel 10369 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024701.label Connecting and filling vertices in path at fillseed 111191 Finding path............................................................................................................................................. done Filling 111191 nlabel 5234 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024801.label Connecting and filling vertices in path at fillseed 48083 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48083 nlabel 11212 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024901.label Connecting and filling vertices in path at fillseed 107673 Finding path.................................................................................................................................................................................................................................................... done Filling 107673 nlabel 6303 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025001.label Connecting and filling vertices in path at fillseed 49300 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 49300 nlabel 9388 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025101.label Connecting and filling vertices in path at fillseed 45641 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 45641 nlabel 11385 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025201.label Connecting and filling vertices in path at fillseed 47018 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47018 nlabel 9628 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025301.label Connecting and filling vertices in path at fillseed 111216 Finding path....................................................................................................................................................................................................................................................................... done Filling 111216 nlabel 4895 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025401.label Connecting and filling vertices in path at fillseed 105807 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105807 nlabel 8227 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025501.label Connecting and filling vertices in path at fillseed 49374 Finding path........................................................................................................................................................................................................ done Filling 49374 nlabel 5121 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025601.label Connecting and filling vertices in path at fillseed 47820 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47820 nlabel 9214 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025701.label Connecting and filling vertices in path at fillseed 49400 Finding path.............................................................................................................................................................................................................. done Filling 49400 nlabel 6207 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025801.label Connecting and filling vertices in path at fillseed 52284 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52284 nlabel 6662 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025901.label Connecting and filling vertices in path at fillseed 50497 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 50497 nlabel 12555 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026001.label Connecting and filling vertices in path at fillseed 49370 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 49370 nlabel 7303 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026101.label Connecting and filling vertices in path at fillseed 49856 Finding path.............................................................................................................................................................................................................................................. done Filling 49856 nlabel 6404 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026201.label Connecting and filling vertices in path at fillseed 50182 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 50182 nlabel 9585 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026301.label Connecting and filling vertices in path at fillseed 50419 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 50419 nlabel 9374 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026401.label Connecting and filling vertices in path at fillseed 50309 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 50309 nlabel 8223 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026501.label Connecting and filling vertices in path at fillseed 49856 Finding path................................................................................................................................................................................................................. done Filling 49856 nlabel 6905 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026601.label Connecting and filling vertices in path at fillseed 53159 Finding path..................................................................................................................................................................................................................................................................................... done Filling 53159 nlabel 7563 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026701.label Connecting and filling vertices in path at fillseed 50510 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50510 nlabel 12837 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026801.label Connecting and filling vertices in path at fillseed 50329 Finding path..................................................................................................................................................................................................................................................................................................................... done Filling 50329 nlabel 7825 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026901.label Connecting and filling vertices in path at fillseed 50723 Finding path............................................................................................................................................................................................................ done Filling 50723 nlabel 6227 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027001.label Connecting and filling vertices in path at fillseed 51324 Finding path.............................................................................................................................................................................................................................. done Filling 51324 nlabel 5126 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027101.label Connecting and filling vertices in path at fillseed 127429 Finding path....................................................................................................................................................................................................................................... done Filling 127429 nlabel 9467 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027201.label Connecting and filling vertices in path at fillseed 53147 Finding path................................................................................................................... done Filling 53147 nlabel 5202 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027301.label Connecting and filling vertices in path at fillseed 51032 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 51032 nlabel 11849 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027401.label Connecting and filling vertices in path at fillseed 51824 Finding path................................................................................................................................................................................................. done Filling 51824 nlabel 4321 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027501.label Connecting and filling vertices in path at fillseed 52165 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 52165 nlabel 8815 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027601.label Connecting and filling vertices in path at fillseed 52243 Finding path.................................................................................................................................. done Filling 52243 nlabel 5630 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027701.label Connecting and filling vertices in path at fillseed 116186 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 116186 nlabel 8668 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027801.label Connecting and filling vertices in path at fillseed 115516 Finding path................................................................................................................................................................................................................................................................. done Filling 115516 nlabel 5851 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027901.label Connecting and filling vertices in path at fillseed 54845 Finding path.......................................................................................................................................................................................................................................................................... done Filling 54845 nlabel 9010 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028001.label Connecting and filling vertices in path at fillseed 56885 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56885 nlabel 13476 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028101.label Connecting and filling vertices in path at fillseed 52133 Finding path................................................................................................................................................................................................................................................................................................... done Filling 52133 nlabel 8348 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028201.label Connecting and filling vertices in path at fillseed 55331 Finding path................................................................................................................................................................................................ done Filling 55331 nlabel 6009 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028301.label Connecting and filling vertices in path at fillseed 56515 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 56515 nlabel 8217 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028401.label Connecting and filling vertices in path at fillseed 53173 Finding path................................................................................................................................................................................................................................................................................................. done Filling 53173 nlabel 9064 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028501.label Connecting and filling vertices in path at fillseed 53315 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53315 nlabel 8699 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028601.label Connecting and filling vertices in path at fillseed 53569 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53569 nlabel 8782 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028701.label Connecting and filling vertices in path at fillseed 53342 Finding path...................................................................................................................................................................... done Filling 53342 nlabel 6193 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028801.label Connecting and filling vertices in path at fillseed 115691 Finding path.......................................................................................................................................................................................................................................................... done Filling 115691 nlabel 8892 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028901.label Connecting and filling vertices in path at fillseed 55080 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55080 nlabel 10719 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029001.label Connecting and filling vertices in path at fillseed 52534 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 52534 nlabel 9405 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029101.label Connecting and filling vertices in path at fillseed 57085 Finding path................................................................................................................................................................................................. done Filling 57085 nlabel 6201 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029201.label Connecting and filling vertices in path at fillseed 57525 Finding path.......................................................................................................................................................................................................................................... done Filling 57525 nlabel 7985 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029301.label Connecting and filling vertices in path at fillseed 54137 Finding path................................................................................................................................................................................................................................................................................................ done Filling 54137 nlabel 8896 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029401.label Connecting and filling vertices in path at fillseed 110153 Finding path..................................................................................................................................................................................................................................................... done Filling 110153 nlabel 6136 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029501.label Connecting and filling vertices in path at fillseed 59080 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 59080 nlabel 12274 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029601.label Connecting and filling vertices in path at fillseed 58215 Finding path................................................................................................................................................................................. done Filling 58215 nlabel 5170 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029701.label Connecting and filling vertices in path at fillseed 55022 Finding path................................................................................................................................................................................................................................................... done Filling 55022 nlabel 7966 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029801.label Connecting and filling vertices in path at fillseed 55081 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 55081 nlabel 9685 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 53504 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53504 nlabel 10312 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 115867 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 115867 nlabel 13167 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030101.label Connecting and filling vertices in path at fillseed 122005 Finding path.......................................................................................................................................................... done Filling 122005 nlabel 7402 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030201.label Connecting and filling vertices in path at fillseed 55030 Finding path........................................................................................................................................................................................................................................................................... done Filling 55030 nlabel 8343 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030301.label Connecting and filling vertices in path at fillseed 55114 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 55114 nlabel 9586 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030401.label Connecting and filling vertices in path at fillseed 60703 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60703 nlabel 12198 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030501.label Connecting and filling vertices in path at fillseed 59780 Finding path................................................................................................................................................................................................. done Filling 59780 nlabel 6033 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030601.label Connecting and filling vertices in path at fillseed 56767 Finding path.................................................................................................................................................................................................................................................................... done Filling 56767 nlabel 6955 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030701.label Connecting and filling vertices in path at fillseed 58592 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 58592 nlabel 8387 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030801.label Connecting and filling vertices in path at fillseed 58825 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 58825 nlabel 9594 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030901.label Connecting and filling vertices in path at fillseed 61381 Finding path......................................................................................................................................................................................................... done Filling 61381 nlabel 5044 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031001.label Connecting and filling vertices in path at fillseed 56869 Finding path.............................................................................................................................................................................................................. done Filling 56869 nlabel 5982 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031101.label Connecting and filling vertices in path at fillseed 62045 Finding path................................................................................................................................................................................................................................. done Filling 62045 nlabel 8548 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031201.label Connecting and filling vertices in path at fillseed 61355 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 61355 nlabel 10202 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031301.label Connecting and filling vertices in path at fillseed 61067 Finding path.................................................................................................................................................................................................................................................................... done Filling 61067 nlabel 6941 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031401.label Connecting and filling vertices in path at fillseed 118113 Finding path................................................................................................................................................................................................................................ done Filling 118113 nlabel 6106 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031501.label Connecting and filling vertices in path at fillseed 56783 Finding path......................................................................................................................................................................................................................................... done Filling 56783 nlabel 7836 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031601.label Connecting and filling vertices in path at fillseed 61226 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 61226 nlabel 9173 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031701.label Connecting and filling vertices in path at fillseed 61119 Finding path................................................................................................................................................................................................................................................ done Filling 61119 nlabel 7214 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031801.label Connecting and filling vertices in path at fillseed 63701 Finding path...................................................................................................................................................................................................... done Filling 63701 nlabel 6303 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031901.label Connecting and filling vertices in path at fillseed 62723 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 62723 nlabel 7497 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032001.label Connecting and filling vertices in path at fillseed 62855 Finding path....................................................................................................................................................................................................................................... done Filling 62855 nlabel 8119 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032101.label Connecting and filling vertices in path at fillseed 61456 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 61456 nlabel 9122 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032201.label Connecting and filling vertices in path at fillseed 60898 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 60898 nlabel 13675 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032301.label Connecting and filling vertices in path at fillseed 63390 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63390 nlabel 6751 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032401.label Connecting and filling vertices in path at fillseed 65380 Finding path......................................................................................................................................................................................................................................... done Filling 65380 nlabel 8418 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032501.label Connecting and filling vertices in path at fillseed 63904 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63904 nlabel 9860 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032601.label Connecting and filling vertices in path at fillseed 62734 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 62734 nlabel 6660 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032701.label Connecting and filling vertices in path at fillseed 105867 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105867 nlabel 6577 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032801.label Connecting and filling vertices in path at fillseed 65379 Finding path........................................................................................................................................................................................................................................................................... done Filling 65379 nlabel 8518 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032901.label Connecting and filling vertices in path at fillseed 63885 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 63885 nlabel 9835 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033001.label Connecting and filling vertices in path at fillseed 62734 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 62734 nlabel 8561 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033101.label Connecting and filling vertices in path at fillseed 64062 Finding path...................................................................................................................................................... done Filling 64062 nlabel 4867 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033201.label Connecting and filling vertices in path at fillseed 66191 Finding path................................................................................................................................................................................................................................................................ done Filling 66191 nlabel 8509 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033301.label Connecting and filling vertices in path at fillseed 67872 Finding path.................................................................................................................................. done Filling 67872 nlabel 5205 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033401.label Connecting and filling vertices in path at fillseed 63143 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63143 nlabel 15229 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033501.label Connecting and filling vertices in path at fillseed 65420 Finding path............................................................................................................................................................................................... done Filling 65420 nlabel 5033 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033601.label Connecting and filling vertices in path at fillseed 67890 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 67890 nlabel 8177 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033701.label Connecting and filling vertices in path at fillseed 62916 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 62916 nlabel 10289 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033801.label Connecting and filling vertices in path at fillseed 117104 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 117104 nlabel 12528 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033901.label Connecting and filling vertices in path at fillseed 64683 Finding path.................................................................................................................................. done Filling 64683 nlabel 5574 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034001.label Connecting and filling vertices in path at fillseed 115927 Finding path.................................................................................................................................................................................................... done Filling 115927 nlabel 7731 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034101.label Connecting and filling vertices in path at fillseed 70558 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 70558 nlabel 6835 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034201.label Connecting and filling vertices in path at fillseed 111776 Finding path................................................................................................................. done Filling 111776 nlabel 4712 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034301.label Connecting and filling vertices in path at fillseed 64108 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 64108 nlabel 15685 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034401.label Connecting and filling vertices in path at fillseed 109424 Finding path............................................................................................................................................................ done Filling 109424 nlabel 5071 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034501.label Connecting and filling vertices in path at fillseed 67826 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 67826 nlabel 8018 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034601.label Connecting and filling vertices in path at fillseed 126104 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 126104 nlabel 10021 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034701.label Connecting and filling vertices in path at fillseed 68695 Finding path................................................................................................................... done Filling 68695 nlabel 4675 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034801.label Connecting and filling vertices in path at fillseed 64358 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64358 nlabel 10122 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034901.label Connecting and filling vertices in path at fillseed 68208 Finding path...................................................................................................................................................................................... done Filling 68208 nlabel 4622 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035001.label Connecting and filling vertices in path at fillseed 67837 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 67837 nlabel 4103 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035101.label Connecting and filling vertices in path at fillseed 72245 Finding path............................................................................................... done Filling 72245 nlabel 4274 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035201.label Connecting and filling vertices in path at fillseed 67054 Finding path..................................................................................................................................................................................................................................... done Filling 67054 nlabel 6577 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035301.label Connecting and filling vertices in path at fillseed 65837 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 65837 nlabel 14192 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035401.label Connecting and filling vertices in path at fillseed 68333 Finding path................................................................................................................................................................................................................................................................................... done Filling 68333 nlabel 4474 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035501.label Connecting and filling vertices in path at fillseed 68730 Finding path............................................................................................................................................................................................................................ done Filling 68730 nlabel 7645 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035601.label Connecting and filling vertices in path at fillseed 70666 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 70666 nlabel 10554 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035701.label Connecting and filling vertices in path at fillseed 67024 Finding path.................................................................................................................................................................................................................... done Filling 67024 nlabel 6020 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035801.label Connecting and filling vertices in path at fillseed 111170 Finding path.......................................................................................................................................................................................... done Filling 111170 nlabel 5133 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035901.label Connecting and filling vertices in path at fillseed 67730 Finding path...................................................................................................................................................................................................................................................................................... done Filling 67730 nlabel 8245 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036001.label Connecting and filling vertices in path at fillseed 72241 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 72241 nlabel 6545 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036101.label Connecting and filling vertices in path at fillseed 67243 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 67243 nlabel 9578 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036201.label Connecting and filling vertices in path at fillseed 67593 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 67593 nlabel 12319 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036301.label Connecting and filling vertices in path at fillseed 70195 Finding path............................................................................................................................................................................................................................................................................................... done Filling 70195 nlabel 4178 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036401.label Connecting and filling vertices in path at fillseed 70537 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 70537 nlabel 6639 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036501.label Connecting and filling vertices in path at fillseed 68040 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 68040 nlabel 9060 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036601.label Connecting and filling vertices in path at fillseed 69231 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 69231 nlabel 12822 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036701.label Connecting and filling vertices in path at fillseed 106386 Finding path...................................................................................................................................................................... done Filling 106386 nlabel 4452 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036801.label Connecting and filling vertices in path at fillseed 70524 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 70524 nlabel 5724 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036901.label Connecting and filling vertices in path at fillseed 71508 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 71508 nlabel 10900 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037001.label Connecting and filling vertices in path at fillseed 70144 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 70144 nlabel 15050 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037101.label Connecting and filling vertices in path at fillseed 71408 Finding path........................................................................................................................................................................................................................................... done Filling 71408 nlabel 5608 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037201.label Connecting and filling vertices in path at fillseed 72165 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 72165 nlabel 7656 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037301.label Connecting and filling vertices in path at fillseed 127634 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 127634 nlabel 11218 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037401.label Connecting and filling vertices in path at fillseed 71733 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71733 nlabel 14471 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037501.label Connecting and filling vertices in path at fillseed 73367 Finding path....................................................................................................................................................................................... done Filling 73367 nlabel 4987 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037601.label Connecting and filling vertices in path at fillseed 74615 Finding path....................................................................................................................................................................................................................................................................... done Filling 74615 nlabel 7749 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037701.label Connecting and filling vertices in path at fillseed 73896 Finding path....................................................................................... done Filling 73896 nlabel 3602 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037801.label Connecting and filling vertices in path at fillseed 70507 Finding path.................................................................................................................................................. done Filling 70507 nlabel 4472 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037901.label Connecting and filling vertices in path at fillseed 71899 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71899 nlabel 13565 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038001.label Connecting and filling vertices in path at fillseed 73595 Finding path....................................................................................................................................................................................................................................................................................... done Filling 73595 nlabel 6365 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038101.label Connecting and filling vertices in path at fillseed 76344 Finding path.............................................................................................................................. done Filling 76344 nlabel 6991 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038201.label Connecting and filling vertices in path at fillseed 72223 Finding path..................................................................................................................................... done Filling 72223 nlabel 4171 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038301.label Connecting and filling vertices in path at fillseed 71884 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71884 nlabel 14321 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038401.label Connecting and filling vertices in path at fillseed 113381 Finding path.............................................................................................................................................................. done Filling 113381 nlabel 5209 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038501.label Connecting and filling vertices in path at fillseed 126881 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 126881 nlabel 5978 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038601.label Connecting and filling vertices in path at fillseed 71539 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 71539 nlabel 9559 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038701.label Connecting and filling vertices in path at fillseed 73389 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 73389 nlabel 14677 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038801.label Connecting and filling vertices in path at fillseed 118949 Finding path.......................................................................................................................................................................................................................... done Filling 118949 nlabel 6167 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038901.label Connecting and filling vertices in path at fillseed 75519 Finding path............................................................................................................................................................. done Filling 75519 nlabel 6818 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039001.label Connecting and filling vertices in path at fillseed 75513 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 75513 nlabel 4447 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039101.label Connecting and filling vertices in path at fillseed 79026 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 79026 nlabel 9432 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039201.label Connecting and filling vertices in path at fillseed 73554 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 73554 nlabel 11472 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039301.label Connecting and filling vertices in path at fillseed 75939 Finding path........................................................................................................................................................................................................................................ done Filling 75939 nlabel 4578 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039401.label Connecting and filling vertices in path at fillseed 119664 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 119664 nlabel 7018 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039501.label Connecting and filling vertices in path at fillseed 74760 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 74760 nlabel 8943 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039601.label Connecting and filling vertices in path at fillseed 76215 Finding path......................................................................................................................................................................................................................................................................... done Filling 76215 nlabel 4701 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039701.label Connecting and filling vertices in path at fillseed 77939 Finding path................................................................................................................................................................................................................................. done Filling 77939 nlabel 5341 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039801.label Connecting and filling vertices in path at fillseed 76714 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 76714 nlabel 3929 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039901.label Connecting and filling vertices in path at fillseed 76332 Finding path................................................................................................................................................................ done Filling 76332 nlabel 7328 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040001.label Connecting and filling vertices in path at fillseed 125840 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 125840 nlabel 10748 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040101.label Connecting and filling vertices in path at fillseed 74186 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74186 nlabel 13012 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040201.label Connecting and filling vertices in path at fillseed 123658 Finding path.............................................................................................................................................................................................................................. done Filling 123658 nlabel 5967 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040301.label Connecting and filling vertices in path at fillseed 77933 Finding path....................................................................................................................................................................................................................... done Filling 77933 nlabel 5866 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040401.label Connecting and filling vertices in path at fillseed 77925 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77925 nlabel 4412 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040501.label Connecting and filling vertices in path at fillseed 77233 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 77233 nlabel 10673 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040601.label Connecting and filling vertices in path at fillseed 74227 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74227 nlabel 15226 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040701.label Connecting and filling vertices in path at fillseed 79651 Finding path............................................................................................................................................................................................................................ done Filling 79651 nlabel 6230 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040801.label Connecting and filling vertices in path at fillseed 110338 Finding path........................................................................................................................................................... done Filling 110338 nlabel 6185 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040901.label Connecting and filling vertices in path at fillseed 78772 Finding path...................................................................................................................................................................................... done Filling 78772 nlabel 7631 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041001.label Connecting and filling vertices in path at fillseed 78144 Finding path................................................................................................................................................................................................................................................................................... done Filling 78144 nlabel 9080 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041101.label Connecting and filling vertices in path at fillseed 75360 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75360 nlabel 11363 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041201.label Connecting and filling vertices in path at fillseed 79910 Finding path................................................................................................................................................ done Filling 79910 nlabel 4458 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041301.label Connecting and filling vertices in path at fillseed 104853 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 104853 nlabel 6675 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041401.label Connecting and filling vertices in path at fillseed 118120 Finding path.......................................................................................................................................................................................................................................... done Filling 118120 nlabel 7115 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041501.label Connecting and filling vertices in path at fillseed 76189 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 76189 nlabel 8532 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041601.label Connecting and filling vertices in path at fillseed 125287 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 125287 nlabel 3668 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041701.label Connecting and filling vertices in path at fillseed 109451 Finding path..................................................................................................................................................... done Filling 109451 nlabel 4274 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041801.label Connecting and filling vertices in path at fillseed 78780 Finding path....................................................................................................................................................................................................................................... done Filling 78780 nlabel 7526 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041901.label Connecting and filling vertices in path at fillseed 82317 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 82317 nlabel 8830 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042001.label Connecting and filling vertices in path at fillseed 79214 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79214 nlabel 11707 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042101.label Connecting and filling vertices in path at fillseed 80154 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 80154 nlabel 4376 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042201.label Connecting and filling vertices in path at fillseed 120701 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 120701 nlabel 6844 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042301.label Connecting and filling vertices in path at fillseed 77182 Finding path............................................................................................................................................................................................................................................................................ done Filling 77182 nlabel 7805 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042401.label Connecting and filling vertices in path at fillseed 81678 Finding path....................................................................................................................................................................................................................................................................... done Filling 81678 nlabel 8294 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042501.label Connecting and filling vertices in path at fillseed 79336 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 79336 nlabel 10972 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042601.label Connecting and filling vertices in path at fillseed 108956 Finding path..................................................................................................................................................................... done Filling 108956 nlabel 4250 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042701.label Connecting and filling vertices in path at fillseed 104847 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 104847 nlabel 6819 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042801.label Connecting and filling vertices in path at fillseed 80294 Finding path................................................................................................................................................................................................................................................................................................. done Filling 80294 nlabel 3508 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042901.label Connecting and filling vertices in path at fillseed 113473 Finding path........................................................................................................................................................................................................................................................................... done Filling 113473 nlabel 8701 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043001.label Connecting and filling vertices in path at fillseed 119158 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 119158 nlabel 13117 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043101.label Connecting and filling vertices in path at fillseed 81783 Finding path....................................................................................................................... done Filling 81783 nlabel 4821 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043201.label Connecting and filling vertices in path at fillseed 114608 Finding path................................................................................................................................................................................................... done Filling 114608 nlabel 6595 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043301.label Connecting and filling vertices in path at fillseed 78791 Finding path............................................................................................................................................................................................................................................................... done Filling 78791 nlabel 7954 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043401.label Connecting and filling vertices in path at fillseed 111284 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 111284 nlabel 5999 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043501.label Connecting and filling vertices in path at fillseed 81743 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 81743 nlabel 9648 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043601.label Connecting and filling vertices in path at fillseed 82453 Finding path................................................................................................ done Filling 82453 nlabel 4912 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043701.label Connecting and filling vertices in path at fillseed 83925 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83925 nlabel 6713 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043801.label Connecting and filling vertices in path at fillseed 81508 Finding path......................................................................................................................................................................................................................................................... done Filling 81508 nlabel 4015 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043901.label Connecting and filling vertices in path at fillseed 81247 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81247 nlabel 15054 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044001.label Connecting and filling vertices in path at fillseed 82108 Finding path..................................................................................................................................................................................................................................... done Filling 82108 nlabel 5322 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044101.label Connecting and filling vertices in path at fillseed 85064 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 85064 nlabel 5052 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044201.label Connecting and filling vertices in path at fillseed 106488 Finding path................................................................................................................................................................................................................................................................. done Filling 106488 nlabel 7581 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044301.label Connecting and filling vertices in path at fillseed 118409 Finding path........................................................................................................................................................................................................................................................................................ done Filling 118409 nlabel 7951 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044401.label Connecting and filling vertices in path at fillseed 83043 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 83043 nlabel 12609 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044501.label Connecting and filling vertices in path at fillseed 85724 Finding path................................................................................................................................................................................................................................... done Filling 85724 nlabel 5423 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044601.label Connecting and filling vertices in path at fillseed 82112 Finding path.................................................................................................................................................................................................................................................................................. done Filling 82112 nlabel 6935 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044701.label Connecting and filling vertices in path at fillseed 83507 Finding path.................................................................................................................................................................................................................... done Filling 83507 nlabel 8258 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044801.label Connecting and filling vertices in path at fillseed 83296 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83296 nlabel 9735 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044901.label Connecting and filling vertices in path at fillseed 84957 Finding path................................................................................................................................................................................... done Filling 84957 nlabel 4175 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045001.label Connecting and filling vertices in path at fillseed 84582 Finding path................................................................................................................................................................................................................................................................................... done Filling 84582 nlabel 6638 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045101.label Connecting and filling vertices in path at fillseed 110258 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110258 nlabel 5247 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045201.label Connecting and filling vertices in path at fillseed 83929 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 83929 nlabel 9512 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045301.label Connecting and filling vertices in path at fillseed 85731 Finding path....................................................................................................................................................................................................... done Filling 85731 nlabel 5835 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045401.label Connecting and filling vertices in path at fillseed 85156 Finding path................................................................................................................................................................................................................. done Filling 85156 nlabel 5878 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045501.label Connecting and filling vertices in path at fillseed 82733 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 82733 nlabel 4018 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045601.label Connecting and filling vertices in path at fillseed 83592 Finding path..................................................................................................................................................................................................................... done Filling 83592 nlabel 8120 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045701.label Connecting and filling vertices in path at fillseed 83691 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83691 nlabel 9508 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045801.label Connecting and filling vertices in path at fillseed 85568 Finding path......................................................................................................................................................................................................................................... done Filling 85568 nlabel 4636 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045901.label Connecting and filling vertices in path at fillseed 83357 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 83357 nlabel 4725 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046001.label Connecting and filling vertices in path at fillseed 83557 Finding path....................................................................................................................................................................................................................................................... done Filling 83557 nlabel 7625 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046101.label Connecting and filling vertices in path at fillseed 84527 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 84527 nlabel 7950 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046201.label Connecting and filling vertices in path at fillseed 86079 Finding path.............................................................................................................................................. done Filling 86079 nlabel 4400 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046301.label Connecting and filling vertices in path at fillseed 114118 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 114118 nlabel 5815 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046401.label Connecting and filling vertices in path at fillseed 85686 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 85686 nlabel 5214 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046501.label Connecting and filling vertices in path at fillseed 84508 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 84508 nlabel 8825 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046601.label Connecting and filling vertices in path at fillseed 109003 Finding path....................................................................................................................................................... done Filling 109003 nlabel 4866 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046701.label Connecting and filling vertices in path at fillseed 87271 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 87271 nlabel 5865 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046801.label Connecting and filling vertices in path at fillseed 85686 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 85686 nlabel 5435 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046901.label Connecting and filling vertices in path at fillseed 88201 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 88201 nlabel 12074 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047001.label Connecting and filling vertices in path at fillseed 111596 Finding path................................................................................................................................................................................ done Filling 111596 nlabel 4810 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047101.label Connecting and filling vertices in path at fillseed 87276 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 87276 nlabel 5762 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047201.label Connecting and filling vertices in path at fillseed 85764 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 85764 nlabel 8023 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047301.label Connecting and filling vertices in path at fillseed 85090 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 85090 nlabel 8748 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047401.label Connecting and filling vertices in path at fillseed 87574 Finding path..................................................................................................... done Filling 87574 nlabel 4539 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047501.label Connecting and filling vertices in path at fillseed 86267 Finding path............................................................................................................................................................................................................................................... done Filling 86267 nlabel 6662 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047601.label Connecting and filling vertices in path at fillseed 85778 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 85778 nlabel 9574 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047701.label Connecting and filling vertices in path at fillseed 126780 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 126780 nlabel 8696 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047801.label Connecting and filling vertices in path at fillseed 88689 Finding path.............................................................................................................................. done Filling 88689 nlabel 5345 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047901.label Connecting and filling vertices in path at fillseed 86276 Finding path................................................................................................................................................................................................................................................................................. done Filling 86276 nlabel 7205 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048001.label Connecting and filling vertices in path at fillseed 105795 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105795 nlabel 4519 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048101.label Connecting and filling vertices in path at fillseed 86427 Finding path............................................................................................................................................................................................................................... done Filling 86427 nlabel 8357 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048201.label Connecting and filling vertices in path at fillseed 88349 Finding path..................................................................................................................................................................................................................................................................... done Filling 88349 nlabel 4790 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048301.label Connecting and filling vertices in path at fillseed 88411 Finding path.......................................................................................................................................................................................................................................................... done Filling 88411 nlabel 7029 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048401.label Connecting and filling vertices in path at fillseed 109612 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 109612 nlabel 5288 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048501.label Connecting and filling vertices in path at fillseed 91623 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91623 nlabel 8494 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048601.label Connecting and filling vertices in path at fillseed 89514 Finding path......................................................................................................................... done Filling 89514 nlabel 5127 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048701.label Connecting and filling vertices in path at fillseed 91114 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 91114 nlabel 5565 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048801.label Connecting and filling vertices in path at fillseed 86233 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86233 nlabel 8154 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048901.label Connecting and filling vertices in path at fillseed 87416 Finding path.......................................................................................................................................................................................................................................................... done Filling 87416 nlabel 9344 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049001.label Connecting and filling vertices in path at fillseed 89876 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89876 nlabel 9308 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049101.label Connecting and filling vertices in path at fillseed 121132 Finding path.............................................................................................................................................. done Filling 121132 nlabel 5368 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049201.label Connecting and filling vertices in path at fillseed 90519 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 90519 nlabel 6053 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049301.label Connecting and filling vertices in path at fillseed 91066 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91066 nlabel 8463 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049401.label Connecting and filling vertices in path at fillseed 86787 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86787 nlabel 7982 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049501.label Connecting and filling vertices in path at fillseed 89876 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 89876 nlabel 9421 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049601.label Connecting and filling vertices in path at fillseed 126487 Finding path...................................................................................................................................................................................................................................................... done Filling 126487 nlabel 4980 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049701.label Connecting and filling vertices in path at fillseed 91668 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91668 nlabel 6160 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049801.label Connecting and filling vertices in path at fillseed 88582 Finding path............................................................................................................................................................................................................................ done Filling 88582 nlabel 10085 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049901.label Connecting and filling vertices in path at fillseed 90541 Finding path............................................................................................................................................ done Filling 90541 nlabel 4569 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050001.label Connecting and filling vertices in path at fillseed 91101 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91101 nlabel 6055 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050101.label Connecting and filling vertices in path at fillseed 89062 Finding path........................................................................................................................................................................................................................ done Filling 89062 nlabel 9644 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050201.label Connecting and filling vertices in path at fillseed 91411 Finding path............................................................................................................... done Filling 91411 nlabel 5358 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050301.label Connecting and filling vertices in path at fillseed 92232 Finding path......................................................................................................................................................................................................................................................................................... done Filling 92232 nlabel 5616 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050401.label Connecting and filling vertices in path at fillseed 123724 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 123724 nlabel 10171 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050501.label Connecting and filling vertices in path at fillseed 90304 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 90304 nlabel 9950 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050601.label Connecting and filling vertices in path at fillseed 92737 Finding path........................................................................................................................................................................................................................................................................................... done Filling 92737 nlabel 4567 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050701.label Connecting and filling vertices in path at fillseed 89503 Finding path............................................................................................................................................................................................................................. done Filling 89503 nlabel 7248 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050801.label Connecting and filling vertices in path at fillseed 93171 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93171 nlabel 9786 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050901.label Connecting and filling vertices in path at fillseed 91724 Finding path............................................................................................................................. done Filling 91724 nlabel 4524 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051001.label Connecting and filling vertices in path at fillseed 91129 Finding path............................................................................................................................................................................................................................................. done Filling 91129 nlabel 6421 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051101.label Connecting and filling vertices in path at fillseed 107453 Finding path.................................................................................................................................................................................................................................................................... done Filling 107453 nlabel 7858 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051201.label Connecting and filling vertices in path at fillseed 94366 Finding path............................................................................................................................................. done Filling 94366 nlabel 5469 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051301.label Connecting and filling vertices in path at fillseed 93265 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 93265 nlabel 5572 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051401.label Connecting and filling vertices in path at fillseed 92182 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 92182 nlabel 8236 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051501.label Connecting and filling vertices in path at fillseed 111422 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111422 nlabel 11049 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051601.label Connecting and filling vertices in path at fillseed 92759 Finding path........................................................................................................... done Filling 92759 nlabel 4628 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051701.label Connecting and filling vertices in path at fillseed 93746 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 93746 nlabel 6679 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051801.label Connecting and filling vertices in path at fillseed 94674 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 94674 nlabel 8878 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051901.label Connecting and filling vertices in path at fillseed 94903 Finding path............................................................................................................................................. done Filling 94903 nlabel 5494 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052001.label Connecting and filling vertices in path at fillseed 93761 Finding path......................................................................................................................................................................................................................................... done Filling 93761 nlabel 5725 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052101.label Connecting and filling vertices in path at fillseed 109302 Finding path....................................................................................................................................................................................................................................................................................... done Filling 109302 nlabel 7633 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052201.label Connecting and filling vertices in path at fillseed 91998 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91998 nlabel 8776 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052301.label Connecting and filling vertices in path at fillseed 117148 Finding path........................................................................................................................................................................................................................................................................................................... done Filling 117148 nlabel 4763 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052401.label Connecting and filling vertices in path at fillseed 93296 Finding path....................................................................................................................................................................................................................... done Filling 93296 nlabel 7755 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052501.label Connecting and filling vertices in path at fillseed 95177 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 95177 nlabel 8129 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052601.label Connecting and filling vertices in path at fillseed 93777 Finding path............................................................................................... done Filling 93777 nlabel 4544 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052701.label Connecting and filling vertices in path at fillseed 121336 Finding path............................................................................................................................................................................................................... done Filling 121336 nlabel 6906 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052801.label Connecting and filling vertices in path at fillseed 93372 Finding path................................................................................................................................................................................................................................................................... done Filling 93372 nlabel 7272 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052901.label Connecting and filling vertices in path at fillseed 95813 Finding path............................................................................................................................. done Filling 95813 nlabel 5047 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053001.label Connecting and filling vertices in path at fillseed 95246 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 95246 nlabel 5027 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053101.label Connecting and filling vertices in path at fillseed 93838 Finding path......................................................................................................................................................................................................................................................... done Filling 93838 nlabel 7281 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053201.label Connecting and filling vertices in path at fillseed 116487 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 116487 nlabel 8409 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053301.label Connecting and filling vertices in path at fillseed 94259 Finding path.......................................................................................................... done Filling 94259 nlabel 3786 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053401.label Connecting and filling vertices in path at fillseed 94305 Finding path............................................................................................................................................................................................................................................ done Filling 94305 nlabel 7220 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053501.label Connecting and filling vertices in path at fillseed 95593 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 95593 nlabel 9865 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053601.label Connecting and filling vertices in path at fillseed 94743 Finding path.................................................................................................... done Filling 94743 nlabel 4313 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053701.label Connecting and filling vertices in path at fillseed 94776 Finding path........................................................................................................................................................................... done Filling 94776 nlabel 6662 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053801.label Connecting and filling vertices in path at fillseed 97160 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 97160 nlabel 7780 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053901.label Connecting and filling vertices in path at fillseed 97177 Finding path.......................................................................................................... done Filling 97177 nlabel 4886 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054001.label Connecting and filling vertices in path at fillseed 95284 Finding path........................................................................................................................................................................... done Filling 95284 nlabel 6420 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054101.label Connecting and filling vertices in path at fillseed 95432 Finding path.......................................................................................................................................................................................................... done Filling 95432 nlabel 7948 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054201.label Connecting and filling vertices in path at fillseed 96323 Finding path...................................................................................... done Filling 96323 nlabel 4435 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054301.label Connecting and filling vertices in path at fillseed 97256 Finding path................................................................................................................................................................................................................................................................................................... done Filling 97256 nlabel 6038 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054401.label Connecting and filling vertices in path at fillseed 96431 Finding path....................................................................................................................................................................................................................... done Filling 96431 nlabel 8544 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054501.label Connecting and filling vertices in path at fillseed 97293 Finding path............................................................................................................................ done Filling 97293 nlabel 4850 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054601.label Connecting and filling vertices in path at fillseed 98584 Finding path.................................................................................... done Filling 98584 nlabel 3459 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054701.label Connecting and filling vertices in path at fillseed 96739 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 96739 nlabel 6009 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054801.label Connecting and filling vertices in path at fillseed 97016 Finding path........................................................................................................................................................................................................................................................................... done Filling 97016 nlabel 6530 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054901.label Connecting and filling vertices in path at fillseed 126304 Finding path................................................................................................................... done Filling 126304 nlabel 5226 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055001.label Connecting and filling vertices in path at fillseed 96825 Finding path.............................................................................................................................................................................................................................................. done Filling 96825 nlabel 6907 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055101.label Connecting and filling vertices in path at fillseed 97678 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 97678 nlabel 7974 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055201.label Connecting and filling vertices in path at fillseed 124657 Finding path................................................................................................................................... done Filling 124657 nlabel 4964 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055301.label Connecting and filling vertices in path at fillseed 98947 Finding path........................................................................................................ done Filling 98947 nlabel 4042 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055401.label Connecting and filling vertices in path at fillseed 98525 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98525 nlabel 7259 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055501.label Connecting and filling vertices in path at fillseed 98603 Finding path.................................................................................................................. done Filling 98603 nlabel 4742 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055601.label Connecting and filling vertices in path at fillseed 98192 Finding path................................................................................................................................................................................................................................................ done Filling 98192 nlabel 5205 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055701.label Connecting and filling vertices in path at fillseed 99251 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99251 nlabel 6525 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055801.label Connecting and filling vertices in path at fillseed 98372 Finding path............................................................................................................................................................................................................................................ done Filling 98372 nlabel 6313 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055901.label Connecting and filling vertices in path at fillseed 100989 Finding path......................................................................................................................................... done Filling 100989 nlabel 5194 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056001.label Connecting and filling vertices in path at fillseed 98596 Finding path................................................................................................................................................................................................................... done Filling 98596 nlabel 7230 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056101.label Connecting and filling vertices in path at fillseed 97380 Finding path....................................................................................................................................................................... done Filling 97380 nlabel 8815 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056201.label Connecting and filling vertices in path at fillseed 99591 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99591 nlabel 6885 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056301.label Connecting and filling vertices in path at fillseed 127208 Finding path................................................................................................................... done Filling 127208 nlabel 4813 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056401.label Connecting and filling vertices in path at fillseed 100165 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 100165 nlabel 5538 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056501.label Connecting and filling vertices in path at fillseed 98904 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98904 nlabel 6204 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056601.label Connecting and filling vertices in path at fillseed 101015 Finding path..................................................................................................... done Filling 101015 nlabel 4811 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056701.label Connecting and filling vertices in path at fillseed 98967 Finding path.......................................................................................................................................................................................................................................................................... done Filling 98967 nlabel 6444 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056801.label Connecting and filling vertices in path at fillseed 99266 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 99266 nlabel 7053 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056901.label Connecting and filling vertices in path at fillseed 112976 Finding path.................................................................................................................................................... done Filling 112976 nlabel 5452 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057001.label Connecting and filling vertices in path at fillseed 100132 Finding path.............................................................................................................................................................. done Filling 100132 nlabel 5948 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057101.label Connecting and filling vertices in path at fillseed 99931 Finding path................................................................................................................................................................................................... done Filling 99931 nlabel 7782 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057201.label Connecting and filling vertices in path at fillseed 107937 Finding path.............................................................................................................. done Filling 107937 nlabel 4909 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057301.label Connecting and filling vertices in path at fillseed 100571 Finding path.......................................................................................................................................... done Filling 100571 nlabel 6086 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057401.label Connecting and filling vertices in path at fillseed 100409 Finding path...................................................................................................................................................................................................................................... done Filling 100409 nlabel 6851 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057501.label Connecting and filling vertices in path at fillseed 101383 Finding path.......................................................................................................................... done Filling 101383 nlabel 4738 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057601.label Connecting and filling vertices in path at fillseed 109534 Finding path..................................................................................................................................... done Filling 109534 nlabel 5720 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057701.label Connecting and filling vertices in path at fillseed 100006 Finding path............................................................................................................................................................................................. done Filling 100006 nlabel 6602 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057801.label Connecting and filling vertices in path at fillseed 124846 Finding path............................................................................. done Filling 124846 nlabel 3562 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057901.label Connecting and filling vertices in path at fillseed 101126 Finding path......................................................................................................................................................................................................... done Filling 101126 nlabel 8818 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058001.label Connecting and filling vertices in path at fillseed 103237 Finding path.......................................................................................................... done Filling 103237 nlabel 4817 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058101.label Connecting and filling vertices in path at fillseed 126122 Finding path....................................................................................................................................... done Filling 126122 nlabel 5718 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058201.label Connecting and filling vertices in path at fillseed 100786 Finding path......................................................................................................................................................................................................... done Filling 100786 nlabel 7803 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058301.label Connecting and filling vertices in path at fillseed 102607 Finding path......................................................................................................................... done Filling 102607 nlabel 4587 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058401.label Connecting and filling vertices in path at fillseed 101446 Finding path............................................................................................................................................................................. done Filling 101446 nlabel 5899 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058501.label Connecting and filling vertices in path at fillseed 102412 Finding path.............................................................................................................................. done Filling 102412 nlabel 5582 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058601.label Connecting and filling vertices in path at fillseed 102485 Finding path............................................................................................................................ done Filling 102485 nlabel 4348 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058701.label Connecting and filling vertices in path at fillseed 102766 Finding path........................................................................................................... done Filling 102766 nlabel 3935 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058801.label Connecting and filling vertices in path at fillseed 102701 Finding path......................................................................................................................................................................... done Filling 102701 nlabel 5522 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058901.label Connecting and filling vertices in path at fillseed 108400 Finding path........................................................................................................................... done Filling 108400 nlabel 4510 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059001.label Connecting and filling vertices in path at fillseed 103046 Finding path..................................................................................................................................................... done Filling 103046 nlabel 4397 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059101.label Connecting and filling vertices in path at fillseed 101216 Finding path............................................................................................................................................................................................... done Filling 101216 nlabel 6770 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059201.label Connecting and filling vertices in path at fillseed 103617 Finding path............................................................................................................... done Filling 103617 nlabel 3696 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059301.label Connecting and filling vertices in path at fillseed 102492 Finding path......................................................................................................................................................................... done Filling 102492 nlabel 7287 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059401.label Connecting and filling vertices in path at fillseed 101984 Finding path................................................................................................................................................................................ done Filling 101984 nlabel 6544 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059501.label Connecting and filling vertices in path at fillseed 102779 Finding path............................................................................................................... done Filling 102779 nlabel 4342 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059601.label Connecting and filling vertices in path at fillseed 102520 Finding path................................................................................................................................................................................................ done Filling 102520 nlabel 7104 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059701.label Connecting and filling vertices in path at fillseed 103275 Finding path........................................................................................................................................................ done Filling 103275 nlabel 5565 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059801.label Connecting and filling vertices in path at fillseed 102789 Finding path.......................................................................................................... done Filling 102789 nlabel 4114 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059901.label Connecting and filling vertices in path at fillseed 103830 Finding path................................................................................................................................................. done Filling 103830 nlabel 5595 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060001.label Connecting and filling vertices in path at fillseed 103087 Finding path............................................................................................................ done Filling 103087 nlabel 4362 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060101.label Connecting and filling vertices in path at fillseed 103343 Finding path.................................................................................................................................... done Filling 103343 nlabel 4597 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060201.label Connecting and filling vertices in path at fillseed 103539 Finding path............................................................................................................................................................... done Filling 103539 nlabel 5319 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060301.label Connecting and filling vertices in path at fillseed 103057 Finding path........................................................................................................ done Filling 103057 nlabel 4014 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060401.label Connecting and filling vertices in path at fillseed 103667 Finding path................................................................................................................................................... done Filling 103667 nlabel 6300 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060501.label Connecting and filling vertices in path at fillseed 103546 Finding path........................................................................................................................................................................................... done Filling 103546 nlabel 5678 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060601.label Connecting and filling vertices in path at fillseed 103358 Finding path............................................................................................................ done Filling 103358 nlabel 4164 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060701.label Connecting and filling vertices in path at fillseed 104308 Finding path..................................................................................................................................................................... done Filling 104308 nlabel 6422 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060801.label Connecting and filling vertices in path at fillseed 115850 Finding path....................................................................................................................... done Filling 115850 nlabel 4269 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060901.label Connecting and filling vertices in path at fillseed 104138 Finding path............................................................................................................................................. done Filling 104138 nlabel 5529 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061001.label Connecting and filling vertices in path at fillseed 104243 Finding path.................................................................................................................................................... done Filling 104243 nlabel 5220 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061101.label Connecting and filling vertices in path at fillseed 103913 Finding path.................................................................................................................................................. done Filling 103913 nlabel 4860 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061201.label Connecting and filling vertices in path at fillseed 104546 Finding path..................................................................................................................................................................................................... done Filling 104546 nlabel 6115 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061301.label Connecting and filling vertices in path at fillseed 104495 Finding path................................................................................................................... done Filling 104495 nlabel 4382 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061401.label Connecting and filling vertices in path at fillseed 104299 Finding path................................................................................................................................................................................. done Filling 104299 nlabel 5548 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061501.label Connecting and filling vertices in path at fillseed 117480 Finding path........................................................................................................................................ done Filling 117480 nlabel 4882 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061601.label Connecting and filling vertices in path at fillseed 104540 Finding path................................................................................................................................................................................................................ done Filling 104540 nlabel 5334 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061701.label Connecting and filling vertices in path at fillseed 104554 Finding path.................................................................................................................................... done Filling 104554 nlabel 4637 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061801.label Connecting and filling vertices in path at fillseed 104605 Finding path............................................................................................................. done Filling 104605 nlabel 5300 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061901.label Connecting and filling vertices in path at fillseed 104548 Finding path.................................................................................................................................................... done Filling 104548 nlabel 5283 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062001.label Connecting and filling vertices in path at fillseed 104705 Finding path................................................................................................................................ done Filling 104705 nlabel 4623 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062101.label ================= compute_lgi('lh.pial','lh.pial-outer-smoothed','/scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc',100,25,'/scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.06 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 124308 face 10000 / 124308 face 15000 / 124308 face 20000 / 124308 face 25000 / 124308 face 30000 / 124308 face 35000 / 124308 face 40000 / 124308 face 45000 / 124308 face 50000 / 124308 face 55000 / 124308 face 60000 / 124308 face 65000 / 124308 face 70000 / 124308 face 75000 / 124308 face 80000 / 124308 face 85000 / 124308 face 90000 / 124308 face 95000 / 124308 face 100000 / 124308 face 105000 / 124308 face 110000 / 124308 face 115000 / 124308 face 120000 / 124308 reading normals info ... mesh_outer = struct with fields: vertices: [62156x3 double] faces: [124308x3 double] facesOfVertex: [62156x1 struct] vertexNormal: [62156x3 double] preparing pial mesh structure ... face 5000 / 255458 face 10000 / 255458 face 15000 / 255458 face 20000 / 255458 face 25000 / 255458 face 30000 / 255458 face 35000 / 255458 face 40000 / 255458 face 45000 / 255458 face 50000 / 255458 face 55000 / 255458 face 60000 / 255458 face 65000 / 255458 face 70000 / 255458 face 75000 / 255458 face 80000 / 255458 face 85000 / 255458 face 90000 / 255458 face 95000 / 255458 face 100000 / 255458 face 105000 / 255458 face 110000 / 255458 face 115000 / 255458 face 120000 / 255458 face 125000 / 255458 face 130000 / 255458 face 135000 / 255458 face 140000 / 255458 face 145000 / 255458 face 150000 / 255458 face 155000 / 255458 face 160000 / 255458 face 165000 / 255458 face 170000 / 255458 face 175000 / 255458 face 180000 / 255458 face 185000 / 255458 face 190000 / 255458 face 195000 / 255458 face 200000 / 255458 face 205000 / 255458 face 210000 / 255458 face 215000 / 255458 face 220000 / 255458 face 225000 / 255458 face 230000 / 255458 face 235000 / 255458 face 240000 / 255458 face 245000 / 255458 face 250000 / 255458 face 255000 / 255458 mesh_total = struct with fields: vertices: [127731x3 double] faces: [255458x3 double] facesOfVertex: [127731x1 struct] ...searching for mesh edges...done (47.59 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 2.5821 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 2.5294 lGI for vertex number 201 of the outer mesh is 2.5891 lGI for vertex number 301 of the outer mesh is 2.4324 lGI for vertex number 401 of the outer mesh is 2.2375 lGI for vertex number 501 of the outer mesh is 2.4299 lGI for vertex number 601 of the outer mesh is 2.2539 lGI for vertex number 701 of the outer mesh is 2.5855 lGI for vertex number 801 of the outer mesh is 2.2418 lGI for vertex number 901 of the outer mesh is 2.9791 lGI for vertex number 1001 of the outer mesh is 2.5878 lGI for vertex number 1101 of the outer mesh is 2.7008 lGI for vertex number 1201 of the outer mesh is 3.4069 lGI for vertex number 1301 of the outer mesh is 2.6419 lGI for vertex number 1401 of the outer mesh is 2.1044 lGI for vertex number 1501 of the outer mesh is 2.6073 lGI for vertex number 1601 of the outer mesh is 2.2318 lGI for vertex number 1701 of the outer mesh is 3.7934 lGI for vertex number 1801 of the outer mesh is 2.7338 lGI for vertex number 1901 of the outer mesh is 2.0361 lGI for vertex number 2001 of the outer mesh is 2.1784 lGI for vertex number 2101 of the outer mesh is 2.8259 lGI for vertex number 2201 of the outer mesh is 2.2028 lGI for vertex number 2301 of the outer mesh is 2.1847 lGI for vertex number 2401 of the outer mesh is 3.1703 lGI for vertex number 2501 of the outer mesh is 2.0766 lGI for vertex number 2601 of the outer mesh is 3.4001 lGI for vertex number 2701 of the outer mesh is 2.3329 lGI for vertex number 2801 of the outer mesh is 2.311 lGI for vertex number 2901 of the outer mesh is 2.5978 lGI for vertex number 3001 of the outer mesh is 2.1995 lGI for vertex number 3101 of the outer mesh is 3.2408 lGI for vertex number 3201 of the outer mesh is 3.0825 lGI for vertex number 3301 of the outer mesh is 2.8339 lGI for vertex number 3401 of the outer mesh is 3.4525 lGI for vertex number 3501 of the outer mesh is 2.2785 lGI for vertex number 3601 of the outer mesh is 3.3336 lGI for vertex number 3701 of the outer mesh is 3.8192 lGI for vertex number 3801 of the outer mesh is 3.4429 lGI for vertex number 3901 of the outer mesh is 2.4034 lGI for vertex number 4001 of the outer mesh is 2.8345 lGI for vertex number 4101 of the outer mesh is 3.6758 lGI for vertex number 4201 of the outer mesh is 3.4005 lGI for vertex number 4301 of the outer mesh is 2.3336 lGI for vertex number 4401 of the outer mesh is 3.3555 lGI for vertex number 4501 of the outer mesh is 3.3025 lGI for vertex number 4601 of the outer mesh is 3.527 lGI for vertex number 4701 of the outer mesh is 2.6715 lGI for vertex number 4801 of the outer mesh is 2.3911 lGI for vertex number 4901 of the outer mesh is 3.6302 lGI for vertex number 5001 of the outer mesh is 3.4142 lGI for vertex number 5101 of the outer mesh is 3.629 lGI for vertex number 5201 of the outer mesh is 3.1666 lGI for vertex number 5301 of the outer mesh is 2.548 lGI for vertex number 5401 of the outer mesh is 3.8845 lGI for vertex number 5501 of the outer mesh is 3.2162 lGI for vertex number 5601 of the outer mesh is 3.1375 lGI for vertex number 5701 of the outer mesh is 2.4464 lGI for vertex number 5801 of the outer mesh is 4.1169 lGI for vertex number 5901 of the outer mesh is 3.7705 lGI for vertex number 6001 of the outer mesh is 3.4604 lGI for vertex number 6101 of the outer mesh is 2.7649 lGI for vertex number 6201 of the outer mesh is 4.1756 lGI for vertex number 6301 of the outer mesh is 3.6202 lGI for vertex number 6401 of the outer mesh is 3.2739 lGI for vertex number 6501 of the outer mesh is 3.1479 lGI for vertex number 6601 of the outer mesh is 3.3123 lGI for vertex number 6701 of the outer mesh is 3.4831 lGI for vertex number 6801 of the outer mesh is 2.8965 lGI for vertex number 6901 of the outer mesh is 2.785 lGI for vertex number 7001 of the outer mesh is 3.0999 lGI for vertex number 7101 of the outer mesh is 2.9547 lGI for vertex number 7201 of the outer mesh is 3.4046 lGI for vertex number 7301 of the outer mesh is 2.9092 lGI for vertex number 7401 of the outer mesh is 3.1167 lGI for vertex number 7501 of the outer mesh is 3.2805 lGI for vertex number 7601 of the outer mesh is 3.3567 lGI for vertex number 7701 of the outer mesh is 3.342 lGI for vertex number 7801 of the outer mesh is 2.7299 lGI for vertex number 7901 of the outer mesh is 2.9848 lGI for vertex number 8001 of the outer mesh is 3.499 lGI for vertex number 8101 of the outer mesh is 3.3273 lGI for vertex number 8201 of the outer mesh is 3.1424 lGI for vertex number 8301 of the outer mesh is 2.9738 lGI for vertex number 8401 of the outer mesh is 3.7502 lGI for vertex number 8501 of the outer mesh is 3.4612 lGI for vertex number 8601 of the outer mesh is 3.0726 lGI for vertex number 8701 of the outer mesh is 3.0875 lGI for vertex number 8801 of the outer mesh is 3.6529 lGI for vertex number 8901 of the outer mesh is 2.6898 lGI for vertex number 9001 of the outer mesh is 2.6769 lGI for vertex number 9101 of the outer mesh is 3.1244 lGI for vertex number 9201 of the outer mesh is 3.6056 lGI for vertex number 9301 of the outer mesh is 3.1823 lGI for vertex number 9401 of the outer mesh is 3.1515 lGI for vertex number 9501 of the outer mesh is 4.4191 lGI for vertex number 9601 of the outer mesh is 3.6252 lGI for vertex number 9701 of the outer mesh is 3.2455 lGI for vertex number 9801 of the outer mesh is 2.8831 lGI for vertex number 9901 of the outer mesh is 4.0675 lGI for vertex number 10001 of the outer mesh is 3.1021 ratio saved at 10001 lGI for vertex number 10101 of the outer mesh is 3.0468 lGI for vertex number 10201 of the outer mesh is 3.2132 lGI for vertex number 10301 of the outer mesh is 4.2697 lGI for vertex number 10401 of the outer mesh is 3.2734 lGI for vertex number 10501 of the outer mesh is 3.2188 lGI for vertex number 10601 of the outer mesh is 3.2056 lGI for vertex number 10701 of the outer mesh is 4.1943 lGI for vertex number 10801 of the outer mesh is 3.2638 lGI for vertex number 10901 of the outer mesh is 2.9705 lGI for vertex number 11001 of the outer mesh is 2.9889 lGI for vertex number 11101 of the outer mesh is 4.0344 lGI for vertex number 11201 of the outer mesh is 3.7353 lGI for vertex number 11301 of the outer mesh is 3.2881 lGI for vertex number 11401 of the outer mesh is 2.6928 lGI for vertex number 11501 of the outer mesh is 4.1949 lGI for vertex number 11601 of the outer mesh is 3.9547 lGI for vertex number 11701 of the outer mesh is 3.1058 lGI for vertex number 11801 of the outer mesh is 3.0402 lGI for vertex number 11901 of the outer mesh is 4.1882 lGI for vertex number 12001 of the outer mesh is 3.8646 lGI for vertex number 12101 of the outer mesh is 3.3511 lGI for vertex number 12201 of the outer mesh is 2.8941 lGI for vertex number 12301 of the outer mesh is 4.1903 lGI for vertex number 12401 of the outer mesh is 3.8637 lGI for vertex number 12501 of the outer mesh is 3.3287 lGI for vertex number 12601 of the outer mesh is 2.7054 lGI for vertex number 12701 of the outer mesh is 2.9316 lGI for vertex number 12801 of the outer mesh is 4.2571 lGI for vertex number 12901 of the outer mesh is 3.9536 lGI for vertex number 13001 of the outer mesh is 2.2464 lGI for vertex number 13101 of the outer mesh is 3.9618 lGI for vertex number 13201 of the outer mesh is 4.1484 lGI for vertex number 13301 of the outer mesh is 2.5522 lGI for vertex number 13401 of the outer mesh is 3.1861 lGI for vertex number 13501 of the outer mesh is 3.938 lGI for vertex number 13601 of the outer mesh is 3.8253 lGI for vertex number 13701 of the outer mesh is 3.0376 lGI for vertex number 13801 of the outer mesh is 3.1908 lGI for vertex number 13901 of the outer mesh is 3.0942 lGI for vertex number 14001 of the outer mesh is 2.9355 lGI for vertex number 14101 of the outer mesh is 4.0165 lGI for vertex number 14201 of the outer mesh is 2.2278 lGI for vertex number 14301 of the outer mesh is 3.6598 lGI for vertex number 14401 of the outer mesh is 2.9469 lGI for vertex number 14501 of the outer mesh is 3.8917 lGI for vertex number 14601 of the outer mesh is 3.0228 lGI for vertex number 14701 of the outer mesh is 3.209 lGI for vertex number 14801 of the outer mesh is 2.895 lGI for vertex number 14901 of the outer mesh is 3.3865 lGI for vertex number 15001 of the outer mesh is 3.2106 lGI for vertex number 15101 of the outer mesh is 3.8057 lGI for vertex number 15201 of the outer mesh is 2.8708 lGI for vertex number 15301 of the outer mesh is 3.9683 lGI for vertex number 15401 of the outer mesh is 2.3931 lGI for vertex number 15501 of the outer mesh is 3.8917 lGI for vertex number 15601 of the outer mesh is 2.9368 lGI for vertex number 15701 of the outer mesh is 4.0442 lGI for vertex number 15801 of the outer mesh is 3.1454 lGI for vertex number 15901 of the outer mesh is 2.7347 lGI for vertex number 16001 of the outer mesh is 4.0555 lGI for vertex number 16101 of the outer mesh is 3.9324 lGI for vertex number 16201 of the outer mesh is 2.5153 lGI for vertex number 16301 of the outer mesh is 2.3113 lGI for vertex number 16401 of the outer mesh is 3.7146 lGI for vertex number 16501 of the outer mesh is 3.3792 lGI for vertex number 16601 of the outer mesh is 2.601 lGI for vertex number 16701 of the outer mesh is 3.1621 lGI for vertex number 16801 of the outer mesh is 3.7749 lGI for vertex number 16901 of the outer mesh is 3.0413 lGI for vertex number 17001 of the outer mesh is 4.5853 lGI for vertex number 17101 of the outer mesh is 2.2745 lGI for vertex number 17201 of the outer mesh is 3.059 lGI for vertex number 17301 of the outer mesh is 3.0332 lGI for vertex number 17401 of the outer mesh is 4.3146 lGI for vertex number 17501 of the outer mesh is 3.0834 lGI for vertex number 17601 of the outer mesh is 3.8767 lGI for vertex number 17701 of the outer mesh is 3.6146 lGI for vertex number 17801 of the outer mesh is 4.1055 lGI for vertex number 17901 of the outer mesh is 2.96 lGI for vertex number 18001 of the outer mesh is 2.9402 lGI for vertex number 18101 of the outer mesh is 3.0297 lGI for vertex number 18201 of the outer mesh is 3.0456 lGI for vertex number 18301 of the outer mesh is 3.1492 lGI for vertex number 18401 of the outer mesh is 2.493 lGI for vertex number 18501 of the outer mesh is 3.7322 lGI for vertex number 18601 of the outer mesh is 3.1049 lGI for vertex number 18701 of the outer mesh is 2.7551 lGI for vertex number 18801 of the outer mesh is 3.2901 lGI for vertex number 18901 of the outer mesh is 2.773 lGI for vertex number 19001 of the outer mesh is 3.5156 lGI for vertex number 19101 of the outer mesh is 4.4618 lGI for vertex number 19201 of the outer mesh is 2.5125 lGI for vertex number 19301 of the outer mesh is 3.5796 lGI for vertex number 19401 of the outer mesh is 3.6811 lGI for vertex number 19501 of the outer mesh is 3.5397 lGI for vertex number 19601 of the outer mesh is 2.8037 lGI for vertex number 19701 of the outer mesh is 3.1641 lGI for vertex number 19801 of the outer mesh is 3.0563 lGI for vertex number 19901 of the outer mesh is 3.5992 lGI for vertex number 20001 of the outer mesh is 2.8846 ratio saved at 20001 lGI for vertex number 20101 of the outer mesh is 3.2065 lGI for vertex number 20201 of the outer mesh is 3.7175 lGI for vertex number 20301 of the outer mesh is 3.4521 lGI for vertex number 20401 of the outer mesh is 2.8039 lGI for vertex number 20501 of the outer mesh is 2.9827 lGI for vertex number 20601 of the outer mesh is 2.9067 lGI for vertex number 20701 of the outer mesh is 3.6424 lGI for vertex number 20801 of the outer mesh is 2.4182 lGI for vertex number 20901 of the outer mesh is 2.4876 lGI for vertex number 21001 of the outer mesh is 3.7598 lGI for vertex number 21101 of the outer mesh is 2.9119 lGI for vertex number 21201 of the outer mesh is 4.495 lGI for vertex number 21301 of the outer mesh is 2.5403 lGI for vertex number 21401 of the outer mesh is 3.2091 lGI for vertex number 21501 of the outer mesh is 4.1407 lGI for vertex number 21601 of the outer mesh is 4.3112 lGI for vertex number 21701 of the outer mesh is 2.6602 lGI for vertex number 21801 of the outer mesh is 3.3886 lGI for vertex number 21901 of the outer mesh is 2.9133 lGI for vertex number 22001 of the outer mesh is 3.2478 lGI for vertex number 22101 of the outer mesh is 2.6718 lGI for vertex number 22201 of the outer mesh is 3.2574 lGI for vertex number 22301 of the outer mesh is 3.8997 lGI for vertex number 22401 of the outer mesh is 3.9765 lGI for vertex number 22501 of the outer mesh is 2.7045 lGI for vertex number 22601 of the outer mesh is 3.4187 lGI for vertex number 22701 of the outer mesh is 4.0873 lGI for vertex number 22801 of the outer mesh is 4.5019 lGI for vertex number 22901 of the outer mesh is 2.647 lGI for vertex number 23001 of the outer mesh is 3.3544 lGI for vertex number 23101 of the outer mesh is 2.7056 lGI for vertex number 23201 of the outer mesh is 3.5352 lGI for vertex number 23301 of the outer mesh is 2.5844 lGI for vertex number 23401 of the outer mesh is 2.905 lGI for vertex number 23501 of the outer mesh is 2.4378 lGI for vertex number 23601 of the outer mesh is 3.7273 lGI for vertex number 23701 of the outer mesh is 2.6684 lGI for vertex number 23801 of the outer mesh is 3.0068 lGI for vertex number 23901 of the outer mesh is 4.153 lGI for vertex number 24001 of the outer mesh is 3.3352 lGI for vertex number 24101 of the outer mesh is 2.7235 lGI for vertex number 24201 of the outer mesh is 2.6293 lGI for vertex number 24301 of the outer mesh is 4.2316 lGI for vertex number 24401 of the outer mesh is 3.3944 lGI for vertex number 24501 of the outer mesh is 2.4129 lGI for vertex number 24601 of the outer mesh is 2.5378 lGI for vertex number 24701 of the outer mesh is 3.6004 lGI for vertex number 24801 of the outer mesh is 2.4036 lGI for vertex number 24901 of the outer mesh is 4.5759 lGI for vertex number 25001 of the outer mesh is 2.6055 lGI for vertex number 25101 of the outer mesh is 3.097 lGI for vertex number 25201 of the outer mesh is 4.3106 lGI for vertex number 25301 of the outer mesh is 3.9067 lGI for vertex number 25401 of the outer mesh is 1.9021 lGI for vertex number 25501 of the outer mesh is 2.7247 lGI for vertex number 25601 of the outer mesh is 2.0922 lGI for vertex number 25701 of the outer mesh is 3.7257 lGI for vertex number 25801 of the outer mesh is 2.4562 lGI for vertex number 25901 of the outer mesh is 2.2777 lGI for vertex number 26001 of the outer mesh is 4.3089 lGI for vertex number 26101 of the outer mesh is 3.0398 lGI for vertex number 26201 of the outer mesh is 2.4946 lGI for vertex number 26301 of the outer mesh is 2.945 lGI for vertex number 26401 of the outer mesh is 3.4593 lGI for vertex number 26501 of the outer mesh is 3.2714 lGI for vertex number 26601 of the outer mesh is 2.6696 lGI for vertex number 26701 of the outer mesh is 2.691 lGI for vertex number 26801 of the outer mesh is 4.4158 lGI for vertex number 26901 of the outer mesh is 3.1196 lGI for vertex number 27001 of the outer mesh is 2.5161 lGI for vertex number 27101 of the outer mesh is 2.1419 lGI for vertex number 27201 of the outer mesh is 3.3178 lGI for vertex number 27301 of the outer mesh is 2.2691 lGI for vertex number 27401 of the outer mesh is 4.7957 lGI for vertex number 27501 of the outer mesh is 1.5701 lGI for vertex number 27601 of the outer mesh is 2.7875 lGI for vertex number 27701 of the outer mesh is 2.2602 lGI for vertex number 27801 of the outer mesh is 3.5877 lGI for vertex number 27901 of the outer mesh is 2.296 lGI for vertex number 28001 of the outer mesh is 2.7505 lGI for vertex number 28101 of the outer mesh is 4.5848 lGI for vertex number 28201 of the outer mesh is 3.2311 lGI for vertex number 28301 of the outer mesh is 2.3613 lGI for vertex number 28401 of the outer mesh is 2.5893 lGI for vertex number 28501 of the outer mesh is 3.2781 lGI for vertex number 28601 of the outer mesh is 3.3936 lGI for vertex number 28701 of the outer mesh is 3.6066 lGI for vertex number 28801 of the outer mesh is 2.3627 lGI for vertex number 28901 of the outer mesh is 2.8286 lGI for vertex number 29001 of the outer mesh is 3.9174 lGI for vertex number 29101 of the outer mesh is 3.7259 lGI for vertex number 29201 of the outer mesh is 2.4497 lGI for vertex number 29301 of the outer mesh is 2.6264 lGI for vertex number 29401 of the outer mesh is 3.324 lGI for vertex number 29501 of the outer mesh is 2.6088 lGI for vertex number 29601 of the outer mesh is 4.8063 lGI for vertex number 29701 of the outer mesh is 1.6811 lGI for vertex number 29801 of the outer mesh is 2.8579 lGI for vertex number 29901 of the outer mesh is 3.5605 lGI for vertex number 30001 of the outer mesh is 4.0383 ratio saved at 30001 lGI for vertex number 30101 of the outer mesh is 5.1328 lGI for vertex number 30201 of the outer mesh is 2.4244 lGI for vertex number 30301 of the outer mesh is 3.1009 lGI for vertex number 30401 of the outer mesh is 3.5093 lGI for vertex number 30501 of the outer mesh is 4.6015 lGI for vertex number 30601 of the outer mesh is 2.3315 lGI for vertex number 30701 of the outer mesh is 2.5767 lGI for vertex number 30801 of the outer mesh is 3.0419 lGI for vertex number 30901 of the outer mesh is 3.6884 lGI for vertex number 31001 of the outer mesh is 2.0996 lGI for vertex number 31101 of the outer mesh is 2.1922 lGI for vertex number 31201 of the outer mesh is 2.9433 lGI for vertex number 31301 of the outer mesh is 3.6683 lGI for vertex number 31401 of the outer mesh is 2.9395 lGI for vertex number 31501 of the outer mesh is 1.7827 lGI for vertex number 31601 of the outer mesh is 2.6746 lGI for vertex number 31701 of the outer mesh is 3.4161 lGI for vertex number 31801 of the outer mesh is 3.0127 lGI for vertex number 31901 of the outer mesh is 2.2822 lGI for vertex number 32001 of the outer mesh is 2.5696 lGI for vertex number 32101 of the outer mesh is 2.8797 lGI for vertex number 32201 of the outer mesh is 3.5702 lGI for vertex number 32301 of the outer mesh is 5.3406 lGI for vertex number 32401 of the outer mesh is 1.969 lGI for vertex number 32501 of the outer mesh is 2.9579 lGI for vertex number 32601 of the outer mesh is 3.6668 lGI for vertex number 32701 of the outer mesh is 2.8392 lGI for vertex number 32801 of the outer mesh is 1.943 lGI for vertex number 32901 of the outer mesh is 2.9361 lGI for vertex number 33001 of the outer mesh is 3.624 lGI for vertex number 33101 of the outer mesh is 3.4456 lGI for vertex number 33201 of the outer mesh is 1.7408 lGI for vertex number 33301 of the outer mesh is 2.8166 lGI for vertex number 33401 of the outer mesh is 2.1724 lGI for vertex number 33501 of the outer mesh is 5.6524 lGI for vertex number 33601 of the outer mesh is 2.0092 lGI for vertex number 33701 of the outer mesh is 2.8351 lGI for vertex number 33801 of the outer mesh is 3.7979 lGI for vertex number 33901 of the outer mesh is 4.7364 lGI for vertex number 34001 of the outer mesh is 2.0817 lGI for vertex number 34101 of the outer mesh is 2.5434 lGI for vertex number 34201 of the outer mesh is 2.5547 lGI for vertex number 34301 of the outer mesh is 2.1849 lGI for vertex number 34401 of the outer mesh is 5.8751 lGI for vertex number 34501 of the outer mesh is 1.7809 lGI for vertex number 34601 of the outer mesh is 2.6922 lGI for vertex number 34701 of the outer mesh is 3.6305 lGI for vertex number 34801 of the outer mesh is 2.1824 lGI for vertex number 34901 of the outer mesh is 3.8039 lGI for vertex number 35001 of the outer mesh is 1.7344 lGI for vertex number 35101 of the outer mesh is 1.6949 lGI for vertex number 35201 of the outer mesh is 1.9931 lGI for vertex number 35301 of the outer mesh is 2.7994 lGI for vertex number 35401 of the outer mesh is 5.4181 lGI for vertex number 35501 of the outer mesh is 1.325 lGI for vertex number 35601 of the outer mesh is 2.7246 lGI for vertex number 35701 of the outer mesh is 3.8448 lGI for vertex number 35801 of the outer mesh is 2.6103 lGI for vertex number 35901 of the outer mesh is 2.0305 lGI for vertex number 36001 of the outer mesh is 2.6718 lGI for vertex number 36101 of the outer mesh is 2.6219 lGI for vertex number 36201 of the outer mesh is 3.6439 lGI for vertex number 36301 of the outer mesh is 4.7691 lGI for vertex number 36401 of the outer mesh is 1.2392 lGI for vertex number 36501 of the outer mesh is 2.6134 lGI for vertex number 36601 of the outer mesh is 3.3441 lGI for vertex number 36701 of the outer mesh is 5.0336 lGI for vertex number 36801 of the outer mesh is 1.5104 lGI for vertex number 36901 of the outer mesh is 2.2923 lGI for vertex number 37001 of the outer mesh is 3.9053 lGI for vertex number 37101 of the outer mesh is 5.6925 lGI for vertex number 37201 of the outer mesh is 2.3668 lGI for vertex number 37301 of the outer mesh is 2.7728 lGI for vertex number 37401 of the outer mesh is 4.1028 lGI for vertex number 37501 of the outer mesh is 5.3359 lGI for vertex number 37601 of the outer mesh is 1.8224 lGI for vertex number 37701 of the outer mesh is 2.5488 lGI for vertex number 37801 of the outer mesh is 1.8363 lGI for vertex number 37901 of the outer mesh is 2.1367 lGI for vertex number 38001 of the outer mesh is 5.2477 lGI for vertex number 38101 of the outer mesh is 1.9826 lGI for vertex number 38201 of the outer mesh is 2.7959 lGI for vertex number 38301 of the outer mesh is 2.0766 lGI for vertex number 38401 of the outer mesh is 5.4674 lGI for vertex number 38501 of the outer mesh is 2.3083 lGI for vertex number 38601 of the outer mesh is 2.3465 lGI for vertex number 38701 of the outer mesh is 3.4843 lGI for vertex number 38801 of the outer mesh is 5.3815 lGI for vertex number 38901 of the outer mesh is 2.2925 lGI for vertex number 39001 of the outer mesh is 2.6015 lGI for vertex number 39101 of the outer mesh is 2.2752 lGI for vertex number 39201 of the outer mesh is 3.5072 lGI for vertex number 39301 of the outer mesh is 4.5609 lGI for vertex number 39401 of the outer mesh is 1.4861 lGI for vertex number 39501 of the outer mesh is 2.38 lGI for vertex number 39601 of the outer mesh is 3.4699 lGI for vertex number 39701 of the outer mesh is 2.2103 lGI for vertex number 39801 of the outer mesh is 2.3367 lGI for vertex number 39901 of the outer mesh is 1.3182 lGI for vertex number 40001 of the outer mesh is 2.7236 ratio saved at 40001 lGI for vertex number 40101 of the outer mesh is 3.9357 lGI for vertex number 40201 of the outer mesh is 4.8108 lGI for vertex number 40301 of the outer mesh is 2.2549 lGI for vertex number 40401 of the outer mesh is 2.5675 lGI for vertex number 40501 of the outer mesh is 2.3105 lGI for vertex number 40601 of the outer mesh is 3.9036 lGI for vertex number 40701 of the outer mesh is 5.6017 lGI for vertex number 40801 of the outer mesh is 2.3012 lGI for vertex number 40901 of the outer mesh is 2.6376 lGI for vertex number 41001 of the outer mesh is 3.0671 lGI for vertex number 41101 of the outer mesh is 3.4772 lGI for vertex number 41201 of the outer mesh is 4.3404 lGI for vertex number 41301 of the outer mesh is 1.6477 lGI for vertex number 41401 of the outer mesh is 2.2739 lGI for vertex number 41501 of the outer mesh is 2.9759 lGI for vertex number 41601 of the outer mesh is 3.5258 lGI for vertex number 41701 of the outer mesh is 1.6533 lGI for vertex number 41801 of the outer mesh is 1.5476 lGI for vertex number 41901 of the outer mesh is 3.0201 lGI for vertex number 42001 of the outer mesh is 3.4929 lGI for vertex number 42101 of the outer mesh is 4.4013 lGI for vertex number 42201 of the outer mesh is 1.6617 lGI for vertex number 42301 of the outer mesh is 2.3074 lGI for vertex number 42401 of the outer mesh is 3.1574 lGI for vertex number 42501 of the outer mesh is 3.3341 lGI for vertex number 42601 of the outer mesh is 4.302 lGI for vertex number 42701 of the outer mesh is 1.5507 lGI for vertex number 42801 of the outer mesh is 2.3527 lGI for vertex number 42901 of the outer mesh is 1.9291 lGI for vertex number 43001 of the outer mesh is 3.4653 lGI for vertex number 43101 of the outer mesh is 4.9979 lGI for vertex number 43201 of the outer mesh is 1.8165 lGI for vertex number 43301 of the outer mesh is 2.4407 lGI for vertex number 43401 of the outer mesh is 3.2095 lGI for vertex number 43501 of the outer mesh is 2.716 lGI for vertex number 43601 of the outer mesh is 3.9218 lGI for vertex number 43701 of the outer mesh is 1.8445 lGI for vertex number 43801 of the outer mesh is 2.2307 lGI for vertex number 43901 of the outer mesh is 2.0061 lGI for vertex number 44001 of the outer mesh is 5.5307 lGI for vertex number 44101 of the outer mesh is 2.3027 lGI for vertex number 44201 of the outer mesh is 1.8762 lGI for vertex number 44301 of the outer mesh is 3.1256 lGI for vertex number 44401 of the outer mesh is 3.2931 lGI for vertex number 44501 of the outer mesh is 4.933 lGI for vertex number 44601 of the outer mesh is 2.069 lGI for vertex number 44701 of the outer mesh is 2.6836 lGI for vertex number 44801 of the outer mesh is 3.3874 lGI for vertex number 44901 of the outer mesh is 3.9026 lGI for vertex number 45001 of the outer mesh is 1.6129 lGI for vertex number 45101 of the outer mesh is 2.4992 lGI for vertex number 45201 of the outer mesh is 2.3375 lGI for vertex number 45301 of the outer mesh is 3.8551 lGI for vertex number 45401 of the outer mesh is 2.2076 lGI for vertex number 45501 of the outer mesh is 2.2663 lGI for vertex number 45601 of the outer mesh is 2.0748 lGI for vertex number 45701 of the outer mesh is 3.3414 lGI for vertex number 45801 of the outer mesh is 3.891 lGI for vertex number 45901 of the outer mesh is 1.6704 lGI for vertex number 46001 of the outer mesh is 2.1618 lGI for vertex number 46101 of the outer mesh is 3.1528 lGI for vertex number 46201 of the outer mesh is 3.3981 lGI for vertex number 46301 of the outer mesh is 1.7451 lGI for vertex number 46401 of the outer mesh is 2.0961 lGI for vertex number 46501 of the outer mesh is 2.3658 lGI for vertex number 46601 of the outer mesh is 3.6592 lGI for vertex number 46701 of the outer mesh is 1.9488 lGI for vertex number 46801 of the outer mesh is 2.1005 lGI for vertex number 46901 of the outer mesh is 2.4476 lGI for vertex number 47001 of the outer mesh is 4.5993 lGI for vertex number 47101 of the outer mesh is 1.9089 lGI for vertex number 47201 of the outer mesh is 2.0579 lGI for vertex number 47301 of the outer mesh is 3.2826 lGI for vertex number 47401 of the outer mesh is 3.6042 lGI for vertex number 47501 of the outer mesh is 1.8754 lGI for vertex number 47601 of the outer mesh is 2.5272 lGI for vertex number 47701 of the outer mesh is 3.8058 lGI for vertex number 47801 of the outer mesh is 3.5537 lGI for vertex number 47901 of the outer mesh is 2.1537 lGI for vertex number 48001 of the outer mesh is 2.6419 lGI for vertex number 48101 of the outer mesh is 2.1746 lGI for vertex number 48201 of the outer mesh is 3.5097 lGI for vertex number 48301 of the outer mesh is 1.819 lGI for vertex number 48401 of the outer mesh is 2.6341 lGI for vertex number 48501 of the outer mesh is 2.2949 lGI for vertex number 48601 of the outer mesh is 3.3096 lGI for vertex number 48701 of the outer mesh is 2.0271 lGI for vertex number 48801 of the outer mesh is 2.0863 lGI for vertex number 48901 of the outer mesh is 2.9938 lGI for vertex number 49001 of the outer mesh is 3.7771 lGI for vertex number 49101 of the outer mesh is 3.6888 lGI for vertex number 49201 of the outer mesh is 2.1745 lGI for vertex number 49301 of the outer mesh is 2.1782 lGI for vertex number 49401 of the outer mesh is 3.0238 lGI for vertex number 49501 of the outer mesh is 3.0134 lGI for vertex number 49601 of the outer mesh is 3.6984 lGI for vertex number 49701 of the outer mesh is 1.892 lGI for vertex number 49801 of the outer mesh is 2.3202 lGI for vertex number 49901 of the outer mesh is 4.0781 lGI for vertex number 50001 of the outer mesh is 1.9827 ratio saved at 50001 lGI for vertex number 50101 of the outer mesh is 2.2423 lGI for vertex number 50201 of the outer mesh is 3.8752 lGI for vertex number 50301 of the outer mesh is 2.2645 lGI for vertex number 50401 of the outer mesh is 2.1232 lGI for vertex number 50501 of the outer mesh is 3.6889 lGI for vertex number 50601 of the outer mesh is 3.941 lGI for vertex number 50701 of the outer mesh is 1.9532 lGI for vertex number 50801 of the outer mesh is 3.0873 lGI for vertex number 50901 of the outer mesh is 3.8597 lGI for vertex number 51001 of the outer mesh is 1.9275 lGI for vertex number 51101 of the outer mesh is 2.4735 lGI for vertex number 51201 of the outer mesh is 3.3362 lGI for vertex number 51301 of the outer mesh is 2.1211 lGI for vertex number 51401 of the outer mesh is 2.2563 lGI for vertex number 51501 of the outer mesh is 3.0192 lGI for vertex number 51601 of the outer mesh is 4.5698 lGI for vertex number 51701 of the outer mesh is 1.9991 lGI for vertex number 51801 of the outer mesh is 2.3765 lGI for vertex number 51901 of the outer mesh is 3.3689 lGI for vertex number 52001 of the outer mesh is 2.191 lGI for vertex number 52101 of the outer mesh is 2.313 lGI for vertex number 52201 of the outer mesh is 3.2446 lGI for vertex number 52301 of the outer mesh is 3.6028 lGI for vertex number 52401 of the outer mesh is 2.0868 lGI for vertex number 52501 of the outer mesh is 3.2475 lGI for vertex number 52601 of the outer mesh is 3.3733 lGI for vertex number 52701 of the outer mesh is 2.0339 lGI for vertex number 52801 of the outer mesh is 2.6676 lGI for vertex number 52901 of the outer mesh is 3.149 lGI for vertex number 53001 of the outer mesh is 2.1272 lGI for vertex number 53101 of the outer mesh is 2.2028 lGI for vertex number 53201 of the outer mesh is 3.1542 lGI for vertex number 53301 of the outer mesh is 3.4935 lGI for vertex number 53401 of the outer mesh is 1.8542 lGI for vertex number 53501 of the outer mesh is 3.094 lGI for vertex number 53601 of the outer mesh is 4.0323 lGI for vertex number 53701 of the outer mesh is 2.0098 lGI for vertex number 53801 of the outer mesh is 2.9257 lGI for vertex number 53901 of the outer mesh is 3.3457 lGI for vertex number 54001 of the outer mesh is 1.8849 lGI for vertex number 54101 of the outer mesh is 2.6261 lGI for vertex number 54201 of the outer mesh is 3.4693 lGI for vertex number 54301 of the outer mesh is 2.0225 lGI for vertex number 54401 of the outer mesh is 2.1565 lGI for vertex number 54501 of the outer mesh is 3.556 lGI for vertex number 54601 of the outer mesh is 2.0709 lGI for vertex number 54701 of the outer mesh is 1.8044 lGI for vertex number 54801 of the outer mesh is 2.1358 lGI for vertex number 54901 of the outer mesh is 2.9227 lGI for vertex number 55001 of the outer mesh is 1.952 lGI for vertex number 55101 of the outer mesh is 2.636 lGI for vertex number 55201 of the outer mesh is 3.2752 lGI for vertex number 55301 of the outer mesh is 2.1216 lGI for vertex number 55401 of the outer mesh is 1.9921 lGI for vertex number 55501 of the outer mesh is 2.8038 lGI for vertex number 55601 of the outer mesh is 2.0965 lGI for vertex number 55701 of the outer mesh is 2.3305 lGI for vertex number 55801 of the outer mesh is 2.6364 lGI for vertex number 55901 of the outer mesh is 2.8247 lGI for vertex number 56001 of the outer mesh is 1.9428 lGI for vertex number 56101 of the outer mesh is 2.7205 lGI for vertex number 56201 of the outer mesh is 3.6782 lGI for vertex number 56301 of the outer mesh is 2.9974 lGI for vertex number 56401 of the outer mesh is 2.0359 lGI for vertex number 56501 of the outer mesh is 2.061 lGI for vertex number 56601 of the outer mesh is 2.6651 lGI for vertex number 56701 of the outer mesh is 1.9748 lGI for vertex number 56801 of the outer mesh is 2.5041 lGI for vertex number 56901 of the outer mesh is 2.8611 lGI for vertex number 57001 of the outer mesh is 2.2072 lGI for vertex number 57101 of the outer mesh is 2.1417 lGI for vertex number 57201 of the outer mesh is 3.2943 lGI for vertex number 57301 of the outer mesh is 2.2768 lGI for vertex number 57401 of the outer mesh is 2.1821 lGI for vertex number 57501 of the outer mesh is 3.0659 lGI for vertex number 57601 of the outer mesh is 1.9922 lGI for vertex number 57701 of the outer mesh is 2.3032 lGI for vertex number 57801 of the outer mesh is 2.9258 lGI for vertex number 57901 of the outer mesh is 1.9382 lGI for vertex number 58001 of the outer mesh is 3.7131 lGI for vertex number 58101 of the outer mesh is 2.0229 lGI for vertex number 58201 of the outer mesh is 2.2142 lGI for vertex number 58301 of the outer mesh is 3.3217 lGI for vertex number 58401 of the outer mesh is 2.0836 lGI for vertex number 58501 of the outer mesh is 2.465 lGI for vertex number 58601 of the outer mesh is 2.3456 lGI for vertex number 58701 of the outer mesh is 2.1113 lGI for vertex number 58801 of the outer mesh is 1.9921 lGI for vertex number 58901 of the outer mesh is 2.3999 lGI for vertex number 59001 of the outer mesh is 1.9765 lGI for vertex number 59101 of the outer mesh is 2.0684 lGI for vertex number 59201 of the outer mesh is 2.9821 lGI for vertex number 59301 of the outer mesh is 1.9933 lGI for vertex number 59401 of the outer mesh is 2.843 lGI for vertex number 59501 of the outer mesh is 2.9188 lGI for vertex number 59601 of the outer mesh is 2.2434 lGI for vertex number 59701 of the outer mesh is 2.8272 lGI for vertex number 59801 of the outer mesh is 2.4563 lGI for vertex number 59901 of the outer mesh is 2.1701 lGI for vertex number 60001 of the outer mesh is 2.2016 ratio saved at 60001 lGI for vertex number 60101 of the outer mesh is 2.2268 lGI for vertex number 60201 of the outer mesh is 2.1318 lGI for vertex number 60301 of the outer mesh is 2.4094 lGI for vertex number 60401 of the outer mesh is 2.1498 lGI for vertex number 60501 of the outer mesh is 2.6273 lGI for vertex number 60601 of the outer mesh is 2.6391 lGI for vertex number 60701 of the outer mesh is 2.1366 lGI for vertex number 60801 of the outer mesh is 2.6183 lGI for vertex number 60901 of the outer mesh is 2.1561 lGI for vertex number 61001 of the outer mesh is 2.4698 lGI for vertex number 61101 of the outer mesh is 2.3061 lGI for vertex number 61201 of the outer mesh is 2.4027 lGI for vertex number 61301 of the outer mesh is 2.555 lGI for vertex number 61401 of the outer mesh is 2.2013 lGI for vertex number 61501 of the outer mesh is 2.4725 lGI for vertex number 61601 of the outer mesh is 2.3856 lGI for vertex number 61701 of the outer mesh is 2.3679 lGI for vertex number 61801 of the outer mesh is 2.2607 lGI for vertex number 61901 of the outer mesh is 2.2969 lGI for vertex number 62001 of the outer mesh is 2.4642 lGI for vertex number 62101 of the outer mesh is 2.2486 .. Almost finished .. now back-propagating values on the folded mesh .. average_lGI_over_the_hemisphere = 3.2161 DONE. deltaT = 330.2100 ================= mris_convert -c /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc lh.pial lh.pial_lgi ================= mris_convert -c /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc lh.pial lh.pial_lgi Reading in lh.pial ================= rm -Rf /scratch/juno/dal247378/batches/batch_001/sub-08YFFYY2_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= done. Start: Tue Apr 21 13:11:02 CDT 2026 End: Tue Apr 21 13:44:29 CDT 2026