Sun Dec 21 18:49:49 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/recon-all -subjid sub-06DJHEV0_ses-00A -i sub-06DJHEV0_ses-00A_rec-NORM_run-01_T1w.nii.gz -all subjid sub-06DJHEV0_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Actual FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 build-stamp.txt: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 8192 kbytes maxproc 1545830 maxlocks unlimited maxsignal 1545830 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 377Gi 34Gi 198Gi 22Gi 169Gi 342Gi Swap: 0B 0B 0B SLURM_JOB_ID 82393 ######################################## program versions used 8.0.0 (freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a) 8.0.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mris_convert -all-info ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:49-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:50-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:50-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_motion_correct.fsl 8.0.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/12/22-00:49:50-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-11 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ####################################### GCADIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A_rec-NORM_run-01_T1w.nii.gz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig/001.mgz mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A_rec-NORM_run-01_T1w.nii.gz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig/001.mgz INFO: using NIfTI-1 sform (sform_code=1) reading from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A_rec-NORM_run-01_T1w.nii.gz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Sun Dec 21 18:49:52 CST 2025 Found 1 runs /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig/001.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz mri_info /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz rawavg.mgz ======================================== Volume information for /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz type: MGH intent: MRI (0) dimensions: 176 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: SHORT (4) fov: 256.000 dof: 1 xstart: -88.0, xend: 88.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 2500.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = 1.0000, y_r = 0.0000, z_r = 0.0000, c_r = -0.9483 : x_a = 0.0000, y_a = 1.0000, z_a = 0.0000, c_a = 15.9311 : x_s = 0.0000, y_s = 0.0000, z_s = 1.0000, c_s = -3.6555 talairach xfm : Orientation : RAS Primary Slice Direction: axial voxel to ras transform: 1.0000 0.0000 0.0000 -88.9483 0.0000 1.0000 0.0000 -112.0689 0.0000 0.0000 1.0000 -131.6555 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant 1 ras to voxel transform: 1.0000 0.0000 0.0000 88.9483 0.0000 1.0000 0.0000 112.0689 0.0000 0.0000 1.0000 131.6555 0.0000 0.0000 0.0000 1.0000 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz --conform mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz --conform reading from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) volume geometry: valid : 175227968 extent : (256, 256, 256) voxel : ( 1.0000, 1.0000, 1.0000) x_(ras) : (-1.0000, 0.0000, 0.0000) y_(ras) : ( 0.0000, 0.0000, -1.0000) z_(ras) : ( 0.0000, 1.0000, 0.0000) c_(ras) : (-0.9483, 15.9311, -3.6555) shears : ( 0.0000, 0.0000, 0.0000) file : /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram 0 2262 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz... mri_add_xform_to_header -c /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/talairach.xfm /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz INFO: extension is mgz mri_info /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz orig.mgz ======================================== Volume information for /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz type: MGH intent: MRI (0) dimensions: 256 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: UCHAR (0) fov: 256.000 dof: 1 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 2500.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = -0.9483 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = 15.9311 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -3.6555 talairach xfm : /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal voxel to ras transform: -1.0000 0.0000 0.0000 127.0517 0.0000 0.0000 1.0000 -112.0689 0.0000 -1.0000 0.0000 124.3445 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant -1 ras to voxel transform: -1.0000 -0.0000 -0.0000 127.0517 -0.0000 -0.0000 -1.0000 124.3445 -0.0000 1.0000 -0.0000 112.0689 -0.0000 -0.0000 -0.0000 1.0000 lta_convert --inlta identity.nofile --src /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz --trg /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz --outlta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg2orig.lta 8.0.0 --inlta: identity.nofile input LTA transform. --src: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz src image (geometry). --trg: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz trg image (geometry). --outlta: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg2orig.lta output LTA. LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg2orig.lta... lta_convert successful. mri_synthstrip --threads 1 -i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/synthstrip.mgz Configuring model on the CPU Running SynthStrip model version 1 Input image read from: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz Processing frame (of 1): 1 done Masked image saved to: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/synthstrip.mgz If you use SynthStrip in your analysis, please cite: ---------------------------------------------------- SynthStrip: Skull-Stripping for Any Brain Image A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann NeuroImage 206 (2022), 119474 https://doi.org/10.1016/j.neuroimage.2022.119474 Website: https://synthstrip.io mri_synthseg --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/synthseg.rca.mgz --threads 1 --vol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/synthseg.vol.csv --keepgeom --addctab --cpu SynthSeg 2.0 using CPU, hiding all CUDA_VISIBLE_DEVICES using 1 thread addctab True predicting 1/1 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 135s 135s/step Reslicing to have same geom as the input [1. 1. 1.] segmentation saved in: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/synthseg.rca.mgz volumes saved in: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/synthseg.vol.csv #@# mri_synthseg vmpeak 28022476 If you use this tool in a publication, please cite: SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining B. Billot, D.N. Greve, O. Puonti, A. Thielscher, K. Van Leemput, B. Fischl, A.V. Dalca, J.E. Iglesias Medical Image Analysis, 2023. Sun Dec 21 18:53:10 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/synthstrip.mgz --t /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --affine-only --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305 --threads 1 -rwxr-x--- 1 root kdamme 30890 May 28 2025 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1336639 Sun Dec 21 18:53:10 CST 2025 mri_synthmorph -m affine -t /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305/aff.lta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/synthstrip.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz -j 1 #@# mri_synthmorph: affine, threads: 1, VmPeak: 10667068 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A lta_convert --invert --inlta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305/aff.lta --outlta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta 8.0.0 --invert: will invert transform. --inlta: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305/aff.lta input LTA transform. --outlta: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta output LTA. LTA read, type : 1 1.05102 -0.00691 0.00718 2.52761; 0.00204 0.92409 0.36943 -25.13610; -0.02547 -0.33854 1.04454 -6.17598; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta... lta_convert successful. To check affine registration tkregisterfv --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/synthstrip.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --reg /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305/aff.lta AffineOnly specified, so exiting now Started at Sun Dec 21 18:53:10 CST 2025 Ended at Sun Dec 21 18:53:45 CST 2025 Fs-Synthmorph-Reg-Run-Time-Sec 35 Fs-Synthmorph-Reg-Run-Time-Min 0.58 Fs-Synthmorph-Reg-Run-Time-Hours 0.01 fs-synthmorph-reg Done 8.0.0 --ltavox2vox: output LTA as VOX_TO_VOX transform. --inlta: synthmorph.mni305/aff.lta input LTA transform. --outlta: talairach.xfm.lta output LTA. LTA read, type : 1 1.05102 -0.00691 0.00718 2.52761; 0.00204 0.92409 0.36943 -25.13610; -0.02547 -0.33854 1.04454 -6.17598; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file talairach.xfm.lta... lta_convert successful. 8.0.0 --inlta: talairach.xfm.lta input LTA transform. --outmni: talairach.xfm output MNI/XFM matrix. LTA read, type : 1 1.05102 -0.00691 0.00718 2.52762; 0.00204 0.92409 0.36943 -25.13611; -0.02547 -0.33854 1.04454 -6.17598; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. fs-synthmorph-reg --s sub-06DJHEV0_ses-00A --threads 1 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz --test Sun Dec 21 18:53:45 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg --s sub-06DJHEV0_ses-00A --threads 1 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz --test -rwxr-x--- 1 root kdamme 30890 May 28 2025 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1337924 mri_mask -bb 3 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz cropping npad = 3 DoAbs = 0 Computing bounding box, npad = 3, 3, 3, 3, 3, 3 38 0 0 181 256 256 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz...done. lta_convert --inlta identity.nofile --src /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz --trg /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz --outlta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta 8.0.0 --inlta: identity.nofile input LTA transform. --src: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz src image (geometry). --trg: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz trg image (geometry). --outlta: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta output LTA. LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta... lta_convert successful. Sun Dec 21 18:53:47 CST 2025 mri_synthmorph -m affine -t /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.cropped.nii.gz -j 1 #@# mri_synthmorph: affine, threads: 1, VmPeak: 10651672 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io Sun Dec 21 18:54:20 CST 2025 mri_concatenate_lta -invert1 -invertout /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta invert the first LTA before applying it invert the output LTA Read individual LTAs Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2... Inverting output LTA Writing combined LTA to file /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta... mri_concatenate_lta successful. mri_concatenate_lta -invert2 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/reg.1.0mm.to.1.0mm.cropped.lta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert the second LTA before applying it Read individual LTAs Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2... Writing combined LTA to file /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta... mri_concatenate_lta successful. lta_convert --invert --inlta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --outlta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta 8.0.0 --invert: will invert transform. --inlta: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta input LTA transform. --outlta: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta output LTA. LTA read, type : 1 0.90980 0.01179 -0.01451 -1.72563; -0.02778 0.92960 -0.28014 20.99434; 0.01568 0.31177 0.81501 13.23338; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta... lta_convert successful. lta_convert --inlta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta --outmni /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.xfm 8.0.0 --inlta: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta input LTA transform. --outmni: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.xfm output MNI/XFM matrix. LTA read, type : 1 1.09836 -0.01837 0.01324 2.10578; 0.02372 0.96414 0.33182 -24.59163; -0.03021 -0.36847 1.09979 -6.87028; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. To check affine registration tkregisterfv --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz --reg /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta mri_synthmorph -m deform -t /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz -i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.cropped.nii.gz -j 1 -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz #@# mri_synthmorph: deform, threads: 1, VmPeak: 19881144 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io mri_warp_convert --inras /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz --insrcgeom /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz --outm3z /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz --vg-thresh 1e-5 --lta1-inv /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta --lta2 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/reg.1.0mm.cropped.to.1.0mm.lta 8.0.0 --inras: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz input RAS warp. --insrcgeom: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz atlas/source image (used for geometry). --outm3z: /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz output M3Z. Setting vg_isEqual_Threshold to 0.000010 Applying LTAs to the GCAM GCAMwrite(/scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz) [INFO] Warpfield::convert(): converting GCAM ... [INFO] Warpfield::convert(): gcam [193 x 229 x 193] [INFO] Warpfield::convert(): gcam image [256 x 256 x 256] [INFO] Warpfield::convert(): gcam atlas [193 x 229 x 193] [INFO] Warpfield::convert(): total out of range voxel count: 0 [INFO] niiWrite(): MGZ_INTENT_WARPMAP => NIFTI_INTENT_DISPVECT, intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [INFO] niiWrite(): convert displacement from 0 to 3 mri_warp_convert successful. mri_ca_register -invert-and-save /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz INFO: using NIfTI-1 sform (sform_code=1) Loading gcam [INFO] niiRead(): intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [DEBUG] Warpfield::read() gcam->status = GCAM_LABELED setting orig areas to linear transform determinant scaled 1.00 Computing inverse of GCAM Filling inverse of GCAM Allocating inv_gcam...(256, 256, 256) Saving inverse to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz GCAMwrite(/scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz) [INFO] Warpfield::convert(): converting GCAM ... [INFO] Warpfield::convert(): gcam [256 x 256 x 256] [INFO] Warpfield::convert(): gcam image [193 x 229 x 193] [INFO] Warpfield::convert(): gcam atlas [256 x 256 x 256] [INFO] Warpfield::convert(): total out of range voxel count: 0 [INFO] niiWrite(): MGZ_INTENT_WARPMAP => NIFTI_INTENT_DISPVECT, intent_code = 1006, dimensions = {5, 256, 256, 256, 1, 3, 1, 1} [INFO] niiWrite(): convert displacement from 0 to 3 mri_vol2vol --regheader --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz movvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz targvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz outvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1766693728 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -0.50000; 0.00000 1.00000 0.00000 13.50000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -20.00000; 0.00000 1.00000 0.00000 -20.00000; 0.00000 0.00000 1.00000 -2.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_convert -rt nearest /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz -at /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz mri_convert -rt nearest /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz -at /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz INFO: using NIfTI-1 sform (sform_code=1) reading from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: Reading transformation from file /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz... INFO: Applying transformation from file /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz... Applying morph_3d ... [INFO] niiRead(): intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [DEBUG] Warpfield::read() gcam->status = GCAM_LABELED setting orig areas to linear transform determinant scaled 1.00 morphing to atlas with resample type 0 writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz... mri_diff --po /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz mri_diff --po /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz diffcount 4653709 Volumes differ in pixel data maxdiff 155.38508606 at 76 154 28 0 tkmeditfv -f /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz -aux /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz Started at Sun Dec 21 18:53:45 CST 2025 Ended at Sun Dec 21 19:07:55 CST 2025 Fs-Synthmorph-Reg-Run-Time-Sec 850 Fs-Synthmorph-Reg-Run-Time-Min 14.17 Fs-Synthmorph-Reg-Run-Time-Hours 0.24 fs-synthmorph-reg Done #-------------------------------------------- #@# Nu Intensity Correction Sun Dec 21 19:07:55 CST 2025 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 8.0.0 Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux Sun Dec 21 19:07:55 CST 2025 tmpdir is ./tmp.mri_nu_correct.mni.1341506 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.1341506/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_binarize --i ./tmp.mri_nu_correct.mni.1341506/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.1341506/ones.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.1341506/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.1341506/ones.mgz sysname Linux hostname c-02-11 machine x86_64 user dal247378 input ./tmp.mri_nu_correct.mni.1341506/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.1341506/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777216 voxels in final mask Writing output to ./tmp.mri_nu_correct.mni.1341506/ones.mgz Count: 16777216 16777216.000000 16777216 100.000000 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1341506/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.1341506/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1341506/input.mean.dat 8.0.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1341506/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.1341506/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1341506/input.mean.dat sysname Linux hostname c-02-11 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.1341506/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.1341506/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1341506/ones.mgz --i ./tmp.mri_nu_correct.mni.1341506/nu0.mgz --sum ./tmp.mri_nu_correct.mni.1341506/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1341506/output.mean.dat 8.0.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1341506/ones.mgz --i ./tmp.mri_nu_correct.mni.1341506/nu0.mgz --sum ./tmp.mri_nu_correct.mni.1341506/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1341506/output.mean.dat sysname Linux hostname c-02-11 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.1341506/ones.mgz Loading ./tmp.mri_nu_correct.mni.1341506/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.1341506/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.1341506/nu0.mgz ./tmp.mri_nu_correct.mni.1341506/nu0.mgz mul 1.35804045082848069355 Packing Done packing Unpacking Saving result to './tmp.mri_nu_correct.mni.1341506/nu0.mgz' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 208156 mri_convert ./tmp.mri_nu_correct.mni.1341506/nu0.mgz nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.1341506/nu0.mgz nu.mgz --like orig.mgz reading from ./tmp.mri_nu_correct.mni.1341506/nu0.mgz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 3 seconds. FIRST_PERCENTILE 0.010000 WM_PERCENTILE 0.900000 MAX_R 50.000000 i1 = 5, i2 = 67 #mri_make_uchar# mapping 13 173 to 3 110 : b -6.11532 m 0.672837 : thresh 9.08886 maxsat 388.081 : nzero 11421060 nsat 0 Sun Dec 21 19:10:32 CST 2025 mri_nu_correct.mni done mri_add_xform_to_header -c /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Sun Dec 21 19:10:33 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 1.05102 -0.00691 0.00718 2.52762; 0.00204 0.92409 0.36943 -25.13611; -0.02547 -0.33854 1.04454 -6.17598; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 21 Starting OpenSpline(): npoints = 21 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 107 gm peak at 72 (72), valley at 53 (53) csf peak at 37, setting threshold to 60 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 67 (67), valley at 51 (51) csf peak at 34, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 1 minutes and 12 seconds. #-------------------------------------- #@# MCADura Segmentation Sun Dec 21 19:11:45 CST 2025 mri_mcadura_seg --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/mca-dura.mgz --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm Sun Dec 21 19:11:45 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_mcadura_seg --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/mca-dura.mgz --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm -rwxr-x--- 1 root kdamme 13384 May 28 2025 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_mcadura_seg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1343811 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_vol2vol --reg /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --mov /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.lh.nii.gz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/mcadura.prior.lh.nii.gz regio_read_register: loading lta Matrix from regfile: -1.09836 0.01837 -0.01324 -0.22321; -0.03021 -0.36847 1.09979 -35.23196; -0.02372 -0.96414 -0.33182 -7.03270; 0.00000 0.00000 0.00000 1.00000; Getting target volume geom from lta destination movvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.lh.nii.gz outvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/mcadura.prior.lh.nii.gz regfile /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1766628251 Final tkRAS-to-tkRAS Matrix is: -1.09836 0.01837 -0.01324 -0.22321; -0.03021 -0.36847 1.09979 -35.23196; -0.02372 -0.96414 -0.33182 -7.03270; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.09836 -0.01324 -0.01837 241.35918; -0.02372 -0.33182 0.96414 43.63278; 0.03021 -1.09979 -0.36847 245.33836; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop-to-fov-mm 80 80 80 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/mcadura.prior.lh.nii.gz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/lh.crop.nii.gz CropToFoVmm 80 80 80 DoAbs = 0 Found 6772 voxels in mask (pct= 0.04) MRIcropToFoV(): thresh=0.001 FoV = (80,80,80) nhits=6772 centroid = (164.758,122.408,161.507) min = (137,100,143) max = (184,139,178) delta = (48,40,36) Region 125 82 122 80 80 80 125 82 122 80 80 80 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/lh.crop.nii.gz...done. mri_vol2vol --regheader --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz --targ /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/lh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.lh.crop.nii.gz movvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz targvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/lh.crop.nii.gz outvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.lh.crop.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1767002610 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -37.00000; 0.00000 1.00000 0.00000 34.00000; 0.00000 0.00000 1.00000 6.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 125.00000; 0.00000 1.00000 0.00000 82.00000; 0.00000 0.00000 1.00000 122.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.lh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.lh.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.lh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.lh.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/dumca.lh.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 2 inshape (72, 72, 72) features 24 (None, 72, 72, 72, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 Segmenting image 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.lh.crop.nii.gz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 1s 1s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.lh.mgz vmpcma: 7319832 done mri_vol2vol --regheader --interp nearest --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.lh.mgz --targ /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.lh.uncropped.mgz movvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.lh.mgz targvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.lh.uncropped.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1766723570 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 37.00000; 0.00000 1.00000 0.00000 -34.00000; 0.00000 0.00000 1.00000 -6.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -125.00000; 0.00000 1.00000 0.00000 -82.00000; 0.00000 0.00000 1.00000 -122.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --reg /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --mov /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.rh.nii.gz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/mcadura.prior.rh.nii.gz regio_read_register: loading lta Matrix from regfile: -1.09836 0.01837 -0.01324 -0.22321; -0.03021 -0.36847 1.09979 -35.23196; -0.02372 -0.96414 -0.33182 -7.03270; 0.00000 0.00000 0.00000 1.00000; Getting target volume geom from lta destination movvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.rh.nii.gz outvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/mcadura.prior.rh.nii.gz regfile /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1767246771 Final tkRAS-to-tkRAS Matrix is: -1.09836 0.01837 -0.01324 -0.22321; -0.03021 -0.36847 1.09979 -35.23196; -0.02372 -0.96414 -0.33182 -7.03270; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.09836 -0.01324 -0.01837 241.35918; -0.02372 -0.33182 0.96414 43.63278; 0.03021 -1.09979 -0.36847 245.33836; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop-to-fov-mm 80 80 80 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/mcadura.prior.rh.nii.gz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/rh.crop.nii.gz CropToFoVmm 80 80 80 DoAbs = 0 Found 7198 voxels in mask (pct= 0.04) MRIcropToFoV(): thresh=0.001 FoV = (80,80,80) nhits=7198 centroid = (93.0665,120.902,160.574) min = (73,99,142) max = (118,139,180) delta = (46,41,39) Region 53 81 121 80 80 80 53 81 121 80 80 80 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/rh.crop.nii.gz...done. mri_vol2vol --regheader --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz --targ /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/rh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.rh.crop.nii.gz movvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz targvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/rh.crop.nii.gz outvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.rh.crop.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1766604899 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 35.00000; 0.00000 1.00000 0.00000 33.00000; 0.00000 0.00000 1.00000 7.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 53.00000; 0.00000 1.00000 0.00000 81.00000; 0.00000 0.00000 1.00000 121.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.rh.crop.nii.gz --left-right-reverse-pix /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.rh.crop.lrrev.nii.gz mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.rh.crop.nii.gz --left-right-reverse-pix /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.rh.crop.lrrev.nii.gz reading from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.rh.crop.nii.gz... WARNING: applying left-right reversal to the input pixels without changing geometry. This will likely make the volume geometry WRONG, so make sure you know what you are doing. Reversing pixels for the columns TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.rh.crop.lrrev.nii.gz... mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.rh.crop.lrrev.nii.gz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.lrrev.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.rh.crop.lrrev.nii.gz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.lrrev.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/dumca.lh.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 2 inshape (72, 72, 72) features 24 (None, 72, 72, 72, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 Segmenting image 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/invol.rh.crop.lrrev.nii.gz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 1s 1s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.lrrev.mgz vmpcma: 7319820 done mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.lrrev.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.mgz --left-right-swap-label-table /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/dumca.lh.index /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/dumca.rh.index --left-right-reverse-pix mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.lrrev.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.mgz --left-right-swap-label-table /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/dumca.lh.index /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/dumca.rh.index --left-right-reverse-pix reading from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.lrrev.mgz... Performing left-right swap of labels MRIlrswapSeg(): nswaps 653 WARNING: applying left-right reversal to the input pixels without changing geometry. This will likely make the volume geometry WRONG, so make sure you know what you are doing. Reversing pixels for the columns TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.mgz... mri_vol2vol --regheader --interp nearest --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.mgz --targ /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.uncropped.mgz movvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.mgz targvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.uncropped.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1766686580 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -35.00000; 0.00000 1.00000 0.00000 -33.00000; 0.00000 0.00000 1.00000 -7.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -53.00000; 0.00000 1.00000 0.00000 -81.00000; 0.00000 0.00000 1.00000 -121.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_concat /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.lh.uncropped.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.mri_mcadura_seg.1343811/seg.rh.uncropped.mgz --sum --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.ctab --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/mca-dura.mgz ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing sum across frames Writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/mca-dura.mgz fsvglrun freeview -neuro-view --hide-3d-slices --view coronal /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/mca-dura.mgz:isosurface=1:outline=1 Started at Sun Dec 21 19:11:45 CST 2025 Ended at Sun Dec 21 19:12:07 CST 2025 mri_mcadura_seg-Run-Time-Sec 22 mri_mcadura_seg Done #-------------------------------------- #@# VSinus Segmentation Sun Dec 21 19:12:07 CST 2025 mri_vsinus_seg --s sub-06DJHEV0_ses-00A --rca-synthseg --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm Sun Dec 21 19:12:07 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_vsinus_seg --s sub-06DJHEV0_ses-00A --rca-synthseg --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm -rwxr-x--- 1 root kdamme 20960 May 28 2025 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_vsinus_seg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1346447 mri_vol2vol --mov /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz --lta /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --targ /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz Matrix from LTA: -1.09836 0.01837 -0.01324 -0.22322; -0.03021 -0.36847 1.09979 -35.23198; -0.02372 -0.96414 -0.33182 -7.03270; 0.00000 0.00000 0.00000 1.00000; /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz movvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz targvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz regfile /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1767298769 Final tkRAS-to-tkRAS Matrix is: -1.09836 0.01837 -0.01324 -0.22322; -0.03021 -0.36847 1.09979 -35.23201; -0.02372 -0.96414 -0.33182 -7.03271; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.09836 -0.01324 -0.01837 241.35919; -0.02372 -0.33182 0.96414 43.63278; 0.03021 -1.09979 -0.36847 245.33835; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop 0 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz threshold mask volume at 0.001 cropping npad = 0 DoAbs = 0 Found 92744 voxels in mask (pct= 0.55) Computing bounding box, npad = 0, 0, 0, 0, 0, 0 66 36 26 125 136 80 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz...done. mri_binarize --crop-around-ras /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz nolta cras /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz 0 144 144 144 Getting cras from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz final ras2vox matrix -1.00000 -0.00000 -0.00000 127.05174; -0.00000 -0.00000 -1.00000 124.34453; -0.00000 1.00000 -0.00000 112.06891; -0.00000 -0.00000 -0.00000 1.00000; -------------------------- ostr LIA (144 144 144) (144 144 144) rasCenter -1.44826 -46.0689 20.3445 crsCenter 128.5 104 66 MRIcropAroundCRS() vol size 256 256 256 center 128.5 104 66 fov 144 144 144 limits 58 201 33 176 -5 138 P0 69.0517 -117.069 91.3445 c_ras of new volume -2.94826 -45.0689 19.3445 mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 --ctab /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab --keep_ac --conform --percentile 99.9 --vmp --output-base vsinus --logfile mri_vsinus_seg.log --fov 144 --threads 1 --no-cite-sclimbic --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 --ctab /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab --keep_ac --conform --percentile 99.9 --vmp --output-base vsinus --logfile mri_vsinus_seg.log --fov 144 --threads 1 --no-cite-sclimbic --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 6 inshape (144, 144, 144) features 24 (None, 144, 144, 144, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 Segmenting image 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 8s 8s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz vmpcma: 11232400 done mri_binarize --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/synthseg.rca.mgz --match 3 42 --inv --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri cmdline mri_binarize --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/synthseg.rca.mgz --match 3 42 --inv --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz sysname Linux hostname c-02-11 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/synthseg.rca.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz Binarizing based on matching values nMatch 2 0 3 1 42 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 646099 values in range Counting number of voxels in first frame Found 646099 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz Count: 646099 646099.000000 16777216 3.851050 mri_binarize done mri_vol2vol --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz --targ /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz --interp nearest --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/vsinus.mgz --regheader movvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz targvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/vsinus.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1766585132 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 2.00000; 0.00000 1.00000 0.00000 61.00000; 0.00000 0.00000 1.00000 -23.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -58.00000; 0.00000 1.00000 0.00000 -33.00000; 0.00000 0.00000 1.00000 5.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/vsinus.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/vsinus.mgz DoAbs = 0 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/vsinus.mgz...done. mri_segstats --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz --seg /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/vsinus.mgz --sum /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/vsinus.stats --subject sub-06DJHEV0_ses-00A --etiv 8.0.0 cwd cmdline mri_segstats --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz --seg /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/vsinus.mgz --sum /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/vsinus.stats --subject sub-06DJHEV0_ses-00A --etiv sysname Linux hostname c-02-11 machine x86_64 user dal247378 whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/vsinus.mgz Using embedded color table (and excluding seg 0) Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 6 segmentations Computing statistics for each segmentation Reporting on 5 segmentations Using PrintSegStat mri_segstats done fsvglrun freeview --hide-3d-slices --view coronal -neuro-view /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz:lock=1 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/vsinus.mgz:isosurface=1:outline=1 Started at Sun Dec 21 19:12:07 CST 2025 Ended at Sun Dec 21 19:12:30 CST 2025 Mri_Vsinus_Seg-Run-Time-Sec 23 Mri_Vsinus_Seg-Run-Time-Min 0.38 Mri_Vsinus_Seg-Run-Time-Hours 0.01 mri_vsinus_seg Done mri_mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/T1.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/synthstrip.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/brainmask.mgz DoAbs = 0 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/brainmask.mgz...done. #------------------------------------- #@# EM Registration Sun Dec 21 19:12:30 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca'... GCAread took 0 minutes and 1 seconds. average std = 7.2 using min determinant for regularization = 5.2 0 singular and 884 ill-conditioned covariance matrices regularized reading 'nu.mgz'... MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 5.9 or > 519.0 total sample mean = 79.1 (1017 zeros) ************************************************ spacing=8, using 2841 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2841, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=22.9 skull bounding box = (62, 48, 32) --> (195, 187, 202) finding center of left hemi white matter using (106, 94, 117) as brain centroid of Right_Cerebral_White_Matter... MRImask(): AllowDiffGeom = 1 mean wm in atlas = 107, using box (90,77,96) --> (122, 111,137) to find MRI wm before smoothing, mri peak at 104 robust fit to distribution - 105 +- 6.2 after smoothing, mri peak at 105, scaling input intensities by 1.019 scaling channel 0 by 1.01905 initial log_p = -4.183 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.054495 @ (-10.526, 10.526, -10.526) max log p = -3.932306 @ (5.263, -5.263, -5.263) max log p = -3.841054 @ (2.632, 2.632, 2.632) max log p = -3.841054 @ (0.000, 0.000, 0.000) max log p = -3.815634 @ (-1.974, 1.974, 1.974) max log p = -3.809537 @ (0.329, -0.329, 0.329) max log p = -3.809537 @ (0.000, 0.000, 0.000) max log p = -3.809537 @ (0.000, 0.000, 0.000) Found translation: (-4.3, 9.5, -10.9): log p = -3.810 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.637, old_max_log_p =-3.810 (thresh=-3.8) 1.07500 0.00000 0.00000 -14.10721; 0.00000 1.03837 0.27823 -27.02327; 0.00000 -0.23941 0.89348 35.30548; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 45 seconds. **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.637, old_max_log_p =-3.637 (thresh=-3.6) 1.07500 0.00000 0.00000 -14.10721; 0.00000 1.03837 0.27823 -27.02327; 0.00000 -0.23941 0.89348 35.30548; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 iteration took 0 minutes and 45 seconds. **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.489, old_max_log_p =-3.637 (thresh=-3.6) 1.05444 0.00153 -0.00436 -9.23598; 0.00000 1.03962 0.34237 -34.11926; -0.00536 -0.32418 0.92283 40.43262; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 43 seconds. **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.489, old_max_log_p =-3.489 (thresh=-3.5) 1.05444 0.00153 -0.00436 -9.23598; 0.00000 1.03962 0.34237 -34.11926; -0.00536 -0.32418 0.92283 40.43262; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 iteration took 0 minutes and 43 seconds. **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.444, old_max_log_p =-3.489 (thresh=-3.5) 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03597 0.34117 -33.58035; -0.02253 -0.32302 0.91953 42.88759; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 40 seconds. **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.441, old_max_log_p =-3.444 (thresh=-3.4) 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03476 0.34077 -33.40120; -0.02256 -0.32340 0.92061 42.81432; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2841 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03476 0.34077 -33.40120; -0.02256 -0.32340 0.92061 42.81432; 0.00000 0.00000 0.00000 1.00000; nsamples 2841 Quasinewton: input matrix 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03476 0.34077 -33.40120; -0.02256 -0.32340 0.92061 42.81432; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 008: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03476 0.34077 -33.40120; -0.02256 -0.32340 0.92061 42.81432; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.441 (old=-4.183) transform before final EM align: 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03476 0.34077 -33.40120; -0.02256 -0.32340 0.92061 42.81432; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315638 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03476 0.34077 -33.40120; -0.02256 -0.32340 0.92061 42.81432; 0.00000 0.00000 0.00000 1.00000; nsamples 315638 Quasinewton: input matrix 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03476 0.34077 -33.40120; -0.02256 -0.32340 0.92061 42.81432; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 010: -log(p) = 3.9 tol 0.000000 final transform: 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03476 0.34077 -33.40120; -0.02256 -0.32340 0.92061 42.81432; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... #VMPC# mri_em_register VmPeak 768348 FSRUNTIME@ mri_em_register 0.0799 hours 1 threads registration took 4 minutes and 47 seconds. #-------------------------------------- #@# CA Normalize Sun Dec 21 19:17:18 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=22.9 skull bounding box = (62, 48, 32) --> (195, 187, 202) finding center of left hemi white matter using (106, 94, 117) as brain centroid of Right_Cerebral_White_Matter... mean wm in atlas = 107, using box (90,77,96) --> (122, 111,137) to find MRI wm before smoothing, mri peak at 104 robust fit to distribution - 105 +- 6.2 after smoothing, mri peak at 105, scaling input intensities by 1.019 scaling channel 0 by 1.01905 using 246437 sample points... INFO: compute sample coordinates transform 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03476 0.34077 -33.40120; -0.02256 -0.32340 0.92061 42.81432; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (130, 50, 34) --> (192, 163, 202) Left_Cerebral_White_Matter: limiting intensities to 110.0 --> 132.0 12 of 47 (25.5%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (69, 49, 33) --> (131, 155, 202) Right_Cerebral_White_Matter: limiting intensities to 98.0 --> 132.0 0 of 18 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (132, 133, 67) --> (177, 177, 122) Left_Cerebellum_White_Matter: limiting intensities to 96.0 --> 132.0 0 of 10 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 133, 63) --> (130, 176, 121) Right_Cerebellum_White_Matter: limiting intensities to 104.0 --> 132.0 1 of 9 (11.1%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (114, 122, 101) --> (147, 185, 132) Brain_Stem: limiting intensities to 96.0 --> 132.0 9 of 12 (75.0%) samples deleted using 96 total control points for intensity normalization... bias field = 0.891 +- 0.084 0 of 74 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (130, 50, 34) --> (192, 163, 202) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 142 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (69, 49, 33) --> (131, 155, 202) Right_Cerebral_White_Matter: limiting intensities to 90.0 --> 132.0 0 of 121 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (132, 133, 67) --> (177, 177, 122) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 20 of 62 (32.3%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 133, 63) --> (130, 176, 121) Right_Cerebellum_White_Matter: limiting intensities to 91.0 --> 132.0 12 of 53 (22.6%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (114, 122, 101) --> (147, 185, 132) Brain_Stem: limiting intensities to 88.0 --> 132.0 37 of 82 (45.1%) samples deleted using 460 total control points for intensity normalization... bias field = 0.995 +- 0.079 0 of 389 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (130, 50, 34) --> (192, 163, 202) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 1 of 254 (0.4%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (69, 49, 33) --> (131, 155, 202) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 2 of 256 (0.8%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (132, 133, 67) --> (177, 177, 122) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 35 of 71 (49.3%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 133, 63) --> (130, 176, 121) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 25 of 44 (56.8%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (114, 122, 101) --> (147, 185, 132) Brain_Stem: limiting intensities to 88.0 --> 132.0 65 of 97 (67.0%) samples deleted using 722 total control points for intensity normalization... bias field = 1.014 +- 0.056 0 of 591 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 0 minutes and 57 seconds. #-------------------------------------- #@# EntoWM Segmentation Sun Dec 21 19:18:15 CST 2025 mri_entowm_seg --s sub-06DJHEV0_ses-00A --conform --threads 1 mri_sclimbic_seg --no-cite-sclimbic --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 --keep_ac --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.ctab --percentile 99.9 --vmp --output-base entowm --s sub-06DJHEV0_ses-00A --conform --threads 1 /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --no-cite-sclimbic --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 --keep_ac --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.ctab --percentile 99.9 --vmp --output-base entowm --s sub-06DJHEV0_ses-00A --conform --threads 1 Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 5 inshape (160, 160, 160) features 24 (None, 160, 160, 160, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 Using subject directory /scratch/juno/dal247378/batches/batch_013 Computed eTIV from talairach Segmenting subject sub-06DJHEV0_ses-00A 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/nu.mgz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 11s 11s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/entowm.mgz Wrote volume stats to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/entowm.stats vmpcma: 11264388 done Started at Sun Dec 21 19:18:15 CST 2025 Started at Sun Dec 21 19:18:15 CST 2025 Ended at Sun Dec 21 19:18:33 CST 2025 Ended at Sun Dec 21 19:18:33 CST 2025 mri_entowm_seg-Run-Time-Sec 18 mri_entowm_seg-Run-Time-Sec 18 mri_entowm_seg-Run-Time-Min 0.36 mri_entowm_seg-Run-Time-Min 0.36 mri_entowm_seg-Run-Time-Hours 0.00 mri_entowm_seg-Run-Time-Hours 0.00 mri_entowm_seg Done mri_entowm_seg Done 1 3006 984 1010.7654 wm-lh-entorhinal 2 3201 268 284.3085 wm-lh-gyrus-ambiens 3 4006 858 887.7370 wm-rh-entorhinal 4 4201 266 282.2817 wm-rh-gyrus-ambiens #-------------------------------------- #@# CC Seg Sun Dec 21 19:18:33 CST 2025 seg2cc --s sub-06DJHEV0_ses-00A Sun Dec 21 19:18:33 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/seg2cc --s sub-06DJHEV0_ses-00A freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a seg2cc 8.0.0 Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri IsConformed yes Sun Dec 21 19:18:33 CST 2025 mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta transforms/cc_up.lta sub-06DJHEV0_ses-00A will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as transforms/cc_up.lta reading aseg from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/aseg.auto_noCCseg.mgz reading norm from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/norm.mgz 23143 voxels in left wm, 53077 in right wm, xrange [124, 132] searching rotation angles z=[-8 6], y=[-7 7] searching scale 1 Z rot -8.4 searching scale 1 Z rot -8.1 searching scale 1 Z rot -7.9 searching scale 1 Z rot -7.6 searching scale 1 Z rot -7.4 searching scale 1 Z rot -7.1 searching scale 1 Z rot -6.9 searching scale 1 Z rot -6.6 searching scale 1 Z rot -6.4 searching scale 1 Z rot -6.1 searching scale 1 Z rot -5.9 searching scale 1 Z rot -5.6 searching scale 1 Z rot -5.4 searching scale 1 Z rot -5.1 searching scale 1 Z rot -4.9 searching scale 1 Z rot -4.6 searching scale 1 Z rot -4.4 searching scale 1 Z rot -4.1 searching scale 1 Z rot -3.9 searching scale 1 Z rot -3.6 searching scale 1 Z rot -3.4 searching scale 1 Z rot -3.1 searching scale 1 Z rot -2.9 searching scale 1 Z rot -2.6 searching scale 1 Z rot -2.4 searching scale 1 Z rot -2.1 searching scale 1 Z rot -1.9 searching scale 1 Z rot -1.6 searching scale 1 Z rot -1.4 searching scale 1 Z rot -1.1 searching scale 1 Z rot -0.9 searching scale 1 Z rot -0.6 searching scale 1 Z rot -0.4 searching scale 1 Z rot -0.1 searching scale 1 Z rot 0.1 searching scale 1 Z rot 0.4 searching scale 1 Z rot 0.6 searching scale 1 Z rot 0.9 searching scale 1 Z rot 1.1 searching scale 1 Z rot 1.4 searching scale 1 Z rot 1.6 searching scale 1 Z rot 1.9 searching scale 1 Z rot 2.1 searching scale 1 Z rot 2.4 searching scale 1 Z rot 2.6 searching scale 1 Z rot 2.9 searching scale 1 Z rot 3.1 searching scale 1 Z rot 3.4 searching scale 1 Z rot 3.6 searching scale 1 Z rot 3.9 searching scale 1 Z rot 4.1 searching scale 1 Z rot 4.4 searching scale 1 Z rot 4.6 searching scale 1 Z rot 4.9 searching scale 1 Z rot 5.1 searching scale 1 Z rot 5.4 searching scale 1 Z rot 5.6 searching scale 1 Z rot 5.9 searching scale 1 Z rot 6.1 global minimum found at slice 129.0, rotations (-0.13, -0.61) final transformation (x=129.0, yr=-0.131, zr=-0.611): 0.99994 0.01067 -0.00229 -1.75157; -0.01067 0.99994 0.00002 34.37880; 0.00229 0.00000 1.00000 16.70489; 0.00000 0.00000 0.00000 1.00000; updating x range to be [126, 131] in xformed coordinates best xformed slice 128 min_x_fornix = 123 min_x_fornix = 121 min_x_fornix = 154 min_x_fornix = 154 min_x_fornix = 120 cc center is found at 128 95 111 eigenvectors: -0.00028 0.00096 1.00000; -0.19213 -0.98137 0.00089; 0.98137 -0.19213 0.00046; error in mid anterior detected - correcting... writing aseg with callosum to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/aseg.auto.mgz... corpus callosum segmentation took 0.3 minutes #VMPC# mri_cc VmPeak 432144 mri_cc done Sun Dec 21 19:18:53 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri Started at Sun Dec 21 19:18:33 CST 2025 Ended at Sun Dec 21 19:18:53 CST 2025 Seg2cc-Run-Time-Sec 20 Seg2cc-Run-Time-Hours 0.01 seg2cc Done #-------------------------------------- #@# Merge ASeg Sun Dec 21 19:18:53 CST 2025 cp aseg.auto.mgz aseg.presurf.mgz #-------------------------------------------- #@# Intensity Normalization2 Sun Dec 21 19:18:53 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_normalize -seed 1234 -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading mri_src from norm.mgz... Reading aseg aseg.presurf.mgz aseg read with width 256 (src width 256) normalizing image... NOT doing gentle normalization with control points/label processing with aseg removing outliers in the aseg WM... 1592 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 108 gm peak at 67 (67), valley at 31 (31) csf peak at 34, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 68 (68), valley at 31 (31) csf peak at 35, setting threshold to 57 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 1 minutes and 37 seconds. #-------------------------------------------- #@# Mask BFS Sun Dec 21 19:20:31 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1620898 voxels in mask (pct= 9.66) maskval=0, outval=0 Writing masked volume to brain.finalsurfs.mgz...done. mri_mask -oval 1 -invert brain.finalsurfs.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/mca-dura.mgz brain.finalsurfs.mgz setting masked output voxels to 1.0 instead of 0 Inverting and binarizing mask thresh = 0.5 count 16775973 Resetting threshold to 0.5 DoAbs = 0 Found 16775973 voxels in mask (pct= 99.99) maskval=0, outval=1 Writing masked volume to brain.finalsurfs.mgz...done. mri_mask -oval 1 -invert brain.finalsurfs.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/vsinus.mgz brain.finalsurfs.mgz setting masked output voxels to 1.0 instead of 0 Inverting and binarizing mask thresh = 0.5 count 16763839 Resetting threshold to 0.5 DoAbs = 0 Found 16763839 voxels in mask (pct= 99.92) maskval=0, outval=1 Writing masked volume to brain.finalsurfs.mgz...done. mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 2 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 2 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz Fixing entowm 2 255 255 MRIfixEntoWM(): 255 255 Level=2 MRIfixEntoWM(): nchanged = 534 mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_wit supposed to be reproducible but seed not set LabelAmygalaCortalJunction((): nhits = 4349 Fixing ACJ 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 771 cp brain.finalsurfs.mgz brain.finalsurfs.manedit.mgz #-------------------------------------------- #@# WM Segmentation Sun Dec 21 19:20:35 CST 2025 AntsDenoiseImageFs -i brain.mgz -o antsdn.brain.mgz mri_segment -wsizemm 13 -mprage antsdn.brain.mgz wm.seg.mgz wsizemm = 13, voxres = 1, wsize = 13 Widening wm low from 89 to 79 assuming input volume is MGH (Van der Kouwe) MP-RAGE wm mean: 110 wsize: 13 wm low: 79 wm hi: 125 gray low: 30 gray hi: 99 Doing initial trinary intensity segmentation MRIintensitySegmentation() wm_low=79, wm_hi=125, gray_hi=99 white = 304640, nonwhite = 16196406, ambig = 276170, nmask = 0 Using local statistics to label ambiguous voxels Autodetecting stats Computing class statistics for intensity windows... CCS WM (103.0): 103.4 +- 5.0 [79.0 --> 124.0] CCS GM (71.0) : 70.5 +- 8.6 [30.0 --> 95.0] white_mean 103.401 white_sigma 5.03371 gray_mean 70.5132 gray_sigma 8.55848 setting bottom of white matter range wm_low to 79.1 setting top of gray matter range gray_hi to 87.6 wm_low 79.0717 wm_hi 125 gray_low 30 gray_hi 87.6301 Redoing initial intensity segmentation... MRIintensitySegmentation() wm_low=79.0717, wm_hi=125, gray_hi=87.6301 white = 460089, nonwhite = 16211695, ambig = 105432, nmask = 0 Recomputing local statistics to label ambiguous voxels... wm_low 79.0717 wm_hi 125 gray_low 30 gray_hi 87.6301 using local geometry to label remaining ambiguous voxels... polvwsize = 5, polvlen = 3, gray_hi = 87.6301, wm_low = 79.0717 MRIcpolvMedianCurveSegment(): wsize=5, len=3, gmhi=87.6301, wmlow=79.0717 102236 voxels processed (0.61%) 45790 voxels white (0.27%) 56446 voxels non-white (0.34%) Reclassifying voxels using Gaussian border classifier niter=1 MRIreclassify(): wm_low=74.0717, gray_hi=87.6301, wsize=13 194421 voxels tested (1.16%) 43434 voxels changed (0.26%) 47252 multi-scale searches (0.28%) Recovering bright white MRIrecoverBrightWhite() wm_low 79.0717 wm_hi 125 slack 5.03371 pct_thresh 0.33 intensity_thresh 130.034 nvox_thresh 8.58 2 voxels tested (0.00%) 0 voxels changed (0.00%) removing voxels with positive offset direction... MRIremoveWrongDirection() wsize=3, lowthr=74.0717, hithr=87.6301 smoothing input volume with sigma = 0.250 57373 voxels tested (0.34%) 13040 voxels changed (0.08%) thicken = 1 removing 1-dimensional structures... MRIremove1dStructures(): max_iter=10000, thresh=2, WM_MIN_VAL=5 4254 sparsely connected voxels removed in 1 iterations thickening thin strands.... thickness 4 nsegments 20 wm_hi 125 2760 diagonally connected voxels added... MRIthickenThinWMStrands(): thickness=4, nsegments=20 20 segments, 6208 filled MRIfindBrightNonWM(): 5 bright non-wm voxels segmented. MRIfilterMorphology() WM_MIN_VAL=5, DIAGONAL_FILL=230 white matter segmentation took 0.6 minutes writing output to wm.seg.mgz... mri_edit_wm_with_aseg -keep-in -fix-ento-wm entowm.mgz 3 255 255 -fix-acj aseg.presurf.mgz 255 255 -fill-seg-wm -fix-scm-ha 1 wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz mri_edit_wm_with_aseg -keep-in -fix-ento-wm entowm.mgz 3 255 255 -fix-acj aseg.presurf.mgz 255 255 -fill-seg-wm -fix-scm-ha 1 wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz preserving editing changes in input volume... mri_edit_wm_wit supposed to be reproducible but seed not set auto filling took 0.43 minutes Fixing entowm 3 255 255 LabelAmygalaCortalJunction((): nhits = 4349 Fixing ACJ 255 255 FixSCM HA 1 reading wm segmentation from wm.seg.mgz... 0 voxels added to wm to prevent paths from MTL structures to cortex 10065 additional wm voxels added 0 additional wm voxels added SEG EDIT: 275211 voxels turned on, 28142 voxels turned off. Dilating 1 voxels in 3d propagating editing to output volume from wm.seg.mgz MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 2376 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 771 writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 31 found - 31 modified | TOTAL: 31 pass 2 (xy+): 0 found - 31 modified | TOTAL: 31 pass 1 (xy-): 41 found - 41 modified | TOTAL: 72 pass 2 (xy-): 0 found - 41 modified | TOTAL: 72 pass 1 (yz+): 35 found - 35 modified | TOTAL: 107 pass 2 (yz+): 0 found - 35 modified | TOTAL: 107 pass 1 (yz-): 17 found - 17 modified | TOTAL: 124 pass 2 (yz-): 0 found - 17 modified | TOTAL: 124 pass 1 (xz+): 36 found - 36 modified | TOTAL: 160 pass 2 (xz+): 0 found - 36 modified | TOTAL: 160 pass 1 (xz-): 32 found - 32 modified | TOTAL: 192 pass 2 (xz-): 0 found - 32 modified | TOTAL: 192 Iteration Number : 1 pass 1 (+++): 15 found - 15 modified | TOTAL: 15 pass 2 (+++): 0 found - 15 modified | TOTAL: 15 pass 1 (+++): 5 found - 5 modified | TOTAL: 20 pass 2 (+++): 0 found - 5 modified | TOTAL: 20 pass 1 (+++): 4 found - 4 modified | TOTAL: 24 pass 2 (+++): 0 found - 4 modified | TOTAL: 24 pass 1 (+++): 6 found - 6 modified | TOTAL: 30 pass 2 (+++): 0 found - 6 modified | TOTAL: 30 Iteration Number : 1 pass 1 (++): 213 found - 213 modified | TOTAL: 213 pass 2 (++): 0 found - 213 modified | TOTAL: 213 pass 1 (+-): 212 found - 212 modified | TOTAL: 425 pass 2 (+-): 0 found - 212 modified | TOTAL: 425 pass 1 (--): 199 found - 199 modified | TOTAL: 624 pass 2 (--): 0 found - 199 modified | TOTAL: 624 pass 1 (-+): 228 found - 228 modified | TOTAL: 852 pass 2 (-+): 0 found - 228 modified | TOTAL: 852 Iteration Number : 2 pass 1 (xy+): 3 found - 3 modified | TOTAL: 3 pass 2 (xy+): 0 found - 3 modified | TOTAL: 3 pass 1 (xy-): 3 found - 3 modified | TOTAL: 6 pass 2 (xy-): 0 found - 3 modified | TOTAL: 6 pass 1 (yz+): 7 found - 7 modified | TOTAL: 13 pass 2 (yz+): 0 found - 7 modified | TOTAL: 13 pass 1 (yz-): 2 found - 2 modified | TOTAL: 15 pass 2 (yz-): 0 found - 2 modified | TOTAL: 15 pass 1 (xz+): 4 found - 4 modified | TOTAL: 19 pass 2 (xz+): 0 found - 4 modified | TOTAL: 19 pass 1 (xz-): 4 found - 4 modified | TOTAL: 23 pass 2 (xz-): 0 found - 4 modified | TOTAL: 23 Iteration Number : 2 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 Iteration Number : 2 pass 1 (++): 3 found - 3 modified | TOTAL: 3 pass 2 (++): 0 found - 3 modified | TOTAL: 3 pass 1 (+-): 1 found - 1 modified | TOTAL: 4 pass 2 (+-): 0 found - 1 modified | TOTAL: 4 pass 1 (--): 1 found - 1 modified | TOTAL: 5 pass 2 (--): 0 found - 1 modified | TOTAL: 5 pass 1 (-+): 2 found - 2 modified | TOTAL: 7 pass 2 (-+): 0 found - 2 modified | TOTAL: 7 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 1106 (out of 544887: 0.202978) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done Fixing entowm in wm.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 3 255 255 wm.mgz wm.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 3 255 255 wm.mgz wm.mgz Fixing entowm 3 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 2376 Fixing ACJ in wm.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 wm.mgz wm.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 wm.mgz wm.mgz mri_edit_wm_wit supposed to be reproducible but seed not set LabelAmygalaCortalJunction((): nhits = 4349 Fixing ACJ 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 771 #-------------------------------------------- #@# Fill Sun Dec 21 19:22:10 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.presurf.mgz -ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/SubCorticalMassLUT.txt wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.presurf.mgz... done. searching for cutting planes...voxel to talairach voxel transform 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03476 0.34077 -33.40120; -0.02256 -0.32340 0.92061 42.81432; 0.00000 0.00000 0.00000 1.00000; reading input volume... wm.mgzvoxel to talairach voxel transform 1.05544 -0.00378 0.01076 -11.37776; 0.00000 1.03476 0.34077 -33.40120; -0.02256 -0.32340 0.92061 42.81432; 0.00000 0.00000 0.00000 1.00000; reading segmented volume aseg.presurf.mgz removing CC from segmentation Looking for area (min, max) = (350, 1400) area[0] = 1255 (min = 350, max = 1400), aspect = 0.47 (min = 0.10, max = 0.75) no need to search using seed (126, 118, 149), TAL = (2.0, 21.0, 10.0) talairach voxel to voxel transform 0.94723 0.00000 -0.01107 11.25126; -0.00685 0.86620 -0.32055 42.57832; 0.02080 0.30429 0.97336 -31.27332; 0.00000 0.00000 0.00000 1.00000; segmentation indicates cc at (126, 118, 149) --> (2.0, 21.0, 10.0) done. filling took 0.6 minutes talairach cc position changed to (2.00, 21.00, 10.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(20.00, 21.00, 10.00) SRC: (111.90, 96.29, 151.91) search lh wm seed point around talairach space (-16.00, 21.00, 10.00), SRC: (146.00, 96.04, 152.66) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram for separating WM into two hemispheres ... Find the largest connected component for each hemisphere ... Embedding colortable mri_fill done, writing output to filled.mgz... cp filled.mgz filled.auto.mgz #-------------------------------------------- #@# Tessellate lh Sun Dec 21 19:22:44 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 7 found - 7 modified | TOTAL: 7 pass 2 (yz+): 0 found - 7 modified | TOTAL: 7 pass 1 (yz-): 9 found - 9 modified | TOTAL: 16 pass 2 (yz-): 0 found - 9 modified | TOTAL: 16 pass 1 (xz+): 2 found - 2 modified | TOTAL: 18 pass 2 (xz+): 0 found - 2 modified | TOTAL: 18 pass 1 (xz-): 1 found - 1 modified | TOTAL: 19 pass 2 (xz-): 0 found - 1 modified | TOTAL: 19 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 19 (out of 268426: 0.007078) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix 8.0.0 8.0.0 slice 40: 2905 vertices, 3105 faces slice 50: 9825 vertices, 10118 faces slice 60: 20017 vertices, 20463 faces slice 70: 31957 vertices, 32340 faces slice 80: 43593 vertices, 43966 faces slice 90: 55000 vertices, 55399 faces slice 100: 66276 vertices, 66652 faces slice 110: 77611 vertices, 78018 faces slice 120: 88942 vertices, 89348 faces slice 130: 100170 vertices, 100558 faces slice 140: 111015 vertices, 111435 faces slice 150: 121178 vertices, 121500 faces slice 160: 129908 vertices, 130217 faces slice 170: 136963 vertices, 137213 faces slice 180: 142905 vertices, 143125 faces slice 190: 148104 vertices, 148276 faces slice 200: 150696 vertices, 150742 faces slice 210: 150818 vertices, 150834 faces slice 220: 150818 vertices, 150834 faces slice 230: 150818 vertices, 150834 faces slice 240: 150818 vertices, 150834 faces slice 250: 150818 vertices, 150834 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 150818 voxel in cpt #1: X=-16 [v=150818,e=452502,f=301668] located at (-28.814512, -19.250620, 23.143126) For the whole surface: X=-16 [v=150818,e=452502,f=301668] One single component has been found nothing to do done #-------------------------------------------- #@# Tessellate rh Sun Dec 21 19:22:46 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 9 found - 9 modified | TOTAL: 9 pass 2 (yz+): 0 found - 9 modified | TOTAL: 9 pass 1 (yz-): 5 found - 5 modified | TOTAL: 14 pass 2 (yz-): 0 found - 5 modified | TOTAL: 14 pass 1 (xz+): 2 found - 2 modified | TOTAL: 16 pass 2 (xz+): 0 found - 2 modified | TOTAL: 16 pass 1 (xz-): 5 found - 5 modified | TOTAL: 21 pass 2 (xz-): 0 found - 5 modified | TOTAL: 21 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 1 found - 1 modified | TOTAL: 1 pass 2 (-+): 0 found - 1 modified | TOTAL: 1 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 22 (out of 260085: 0.008459) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix 8.0.0 8.0.0 slice 40: 1583 vertices, 1735 faces slice 50: 8243 vertices, 8524 faces slice 60: 18281 vertices, 18740 faces slice 70: 31054 vertices, 31489 faces slice 80: 43238 vertices, 43665 faces slice 90: 54935 vertices, 55319 faces slice 100: 66187 vertices, 66580 faces slice 110: 77598 vertices, 77978 faces slice 120: 88701 vertices, 89108 faces slice 130: 99775 vertices, 100187 faces slice 140: 110684 vertices, 111091 faces slice 150: 120540 vertices, 120847 faces slice 160: 128475 vertices, 128780 faces slice 170: 135385 vertices, 135621 faces slice 180: 141031 vertices, 141263 faces slice 190: 145817 vertices, 146001 faces slice 200: 148581 vertices, 148625 faces slice 210: 148644 vertices, 148662 faces slice 220: 148644 vertices, 148662 faces slice 230: 148644 vertices, 148662 faces slice 240: 148644 vertices, 148662 faces slice 250: 148644 vertices, 148662 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 148644 voxel in cpt #1: X=-18 [v=148644,e=445986,f=297324] located at (26.416996, -19.528687, 24.726145) For the whole surface: X=-18 [v=148644,e=445986,f=297324] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 lh Sun Dec 21 19:22:49 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Smooth1 rh Sun Dec 21 19:22:51 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Sun Dec 21 19:22:53 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix Not saving sulc Reading ../surf/lh.smoothwm.nofix avg radius = 48.9 mm, total surface area = 80390 mm^2 step 000: RMS=0.151 (target=0.015) step 005: RMS=0.113 (target=0.015) step 010: RMS=0.082 (target=0.015) step 015: RMS=0.068 (target=0.015) step 020: RMS=0.058 (target=0.015) step 025: RMS=0.050 (target=0.015) step 030: RMS=0.043 (target=0.015) step 035: RMS=0.038 (target=0.015) step 040: RMS=0.034 (target=0.015) step 045: RMS=0.032 (target=0.015) step 050: RMS=0.030 (target=0.015) step 055: RMS=0.030 (target=0.015) step 060: RMS=0.029 (target=0.015) writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.2 minutes inflation complete. Not saving sulc mris_inflate utimesec 12.989897 mris_inflate stimesec 0.767375 mris_inflate ru_maxrss 239356 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 500320 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 10616 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 139 mris_inflate ru_nivcsw 21 #-------------------------------------------- #@# Inflation1 rh Sun Dec 21 19:23:07 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 48.1 mm, total surface area = 79190 mm^2 step 000: RMS=0.151 (target=0.015) step 005: RMS=0.113 (target=0.015) step 010: RMS=0.082 (target=0.015) step 015: RMS=0.068 (target=0.015) step 020: RMS=0.058 (target=0.015) step 025: RMS=0.049 (target=0.015) step 030: RMS=0.043 (target=0.015) step 035: RMS=0.038 (target=0.015) step 040: RMS=0.034 (target=0.015) step 045: RMS=0.031 (target=0.015) step 050: RMS=0.030 (target=0.015) step 055: RMS=0.029 (target=0.015) step 060: RMS=0.028 (target=0.015) writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.2 minutes inflation complete. Not saving sulc mris_inflate utimesec 12.788064 mris_inflate stimesec 0.702528 mris_inflate ru_maxrss 236388 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 429480 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 10456 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 139 mris_inflate ru_nivcsw 20 #-------------------------------------------- #@# QSphere lh Sun Dec 21 19:23:20 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 scaling brain by 0.289... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 0.93 +- 0.56 (0.00-->6.71) (max @ vno 63703 --> 64884) face area 0.02 +- 0.03 (-0.11-->0.58) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.873, avgs=0 005/300: dt: 0.9000, rms radial error=176.613, avgs=0 010/300: dt: 0.9000, rms radial error=176.057, avgs=0 015/300: dt: 0.9000, rms radial error=175.326, avgs=0 020/300: dt: 0.9000, rms radial error=174.497, avgs=0 025/300: dt: 0.9000, rms radial error=173.611, avgs=0 030/300: dt: 0.9000, rms radial error=172.693, avgs=0 035/300: dt: 0.9000, rms radial error=171.758, avgs=0 040/300: dt: 0.9000, rms radial error=170.815, avgs=0 045/300: dt: 0.9000, rms radial error=169.869, avgs=0 050/300: dt: 0.9000, rms radial error=168.924, avgs=0 055/300: dt: 0.9000, rms radial error=167.981, avgs=0 060/300: dt: 0.9000, rms radial error=167.042, avgs=0 065/300: dt: 0.9000, rms radial error=166.107, avgs=0 070/300: dt: 0.9000, rms radial error=165.177, avgs=0 075/300: dt: 0.9000, rms radial error=164.251, avgs=0 080/300: dt: 0.9000, rms radial error=163.329, avgs=0 085/300: dt: 0.9000, rms radial error=162.413, avgs=0 090/300: dt: 0.9000, rms radial error=161.501, avgs=0 095/300: dt: 0.9000, rms radial error=160.595, avgs=0 100/300: dt: 0.9000, rms radial error=159.693, avgs=0 105/300: dt: 0.9000, rms radial error=158.796, avgs=0 110/300: dt: 0.9000, rms radial error=157.905, avgs=0 115/300: dt: 0.9000, rms radial error=157.018, avgs=0 120/300: dt: 0.9000, rms radial error=156.138, avgs=0 125/300: dt: 0.9000, rms radial error=155.262, avgs=0 130/300: dt: 0.9000, rms radial error=154.391, avgs=0 135/300: dt: 0.9000, rms radial error=153.525, avgs=0 140/300: dt: 0.9000, rms radial error=152.663, avgs=0 145/300: dt: 0.9000, rms radial error=151.806, avgs=0 150/300: dt: 0.9000, rms radial error=150.954, avgs=0 155/300: dt: 0.9000, rms radial error=150.106, avgs=0 160/300: dt: 0.9000, rms radial error=149.263, avgs=0 165/300: dt: 0.9000, rms radial error=148.425, avgs=0 170/300: dt: 0.9000, rms radial error=147.591, avgs=0 175/300: dt: 0.9000, rms radial error=146.762, avgs=0 180/300: dt: 0.9000, rms radial error=145.937, avgs=0 185/300: dt: 0.9000, rms radial error=145.118, avgs=0 190/300: dt: 0.9000, rms radial error=144.302, avgs=0 195/300: dt: 0.9000, rms radial error=143.492, avgs=0 200/300: dt: 0.9000, rms radial error=142.685, avgs=0 205/300: dt: 0.9000, rms radial error=141.883, avgs=0 210/300: dt: 0.9000, rms radial error=141.085, avgs=0 215/300: dt: 0.9000, rms radial error=140.292, avgs=0 220/300: dt: 0.9000, rms radial error=139.503, avgs=0 225/300: dt: 0.9000, rms radial error=138.719, avgs=0 230/300: dt: 0.9000, rms radial error=137.939, avgs=0 235/300: dt: 0.9000, rms radial error=137.163, avgs=0 240/300: dt: 0.9000, rms radial error=136.391, avgs=0 245/300: dt: 0.9000, rms radial error=135.624, avgs=0 250/300: dt: 0.9000, rms radial error=134.861, avgs=0 255/300: dt: 0.9000, rms radial error=134.102, avgs=0 260/300: dt: 0.9000, rms radial error=133.347, avgs=0 265/300: dt: 0.9000, rms radial error=132.597, avgs=0 270/300: dt: 0.9000, rms radial error=131.850, avgs=0 275/300: dt: 0.9000, rms radial error=131.108, avgs=0 280/300: dt: 0.9000, rms radial error=130.370, avgs=0 285/300: dt: 0.9000, rms radial error=129.636, avgs=0 290/300: dt: 0.9000, rms radial error=128.906, avgs=0 295/300: dt: 0.9000, rms radial error=128.180, avgs=0 300/300: dt: 0.9000, rms radial error=127.458, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 18026.31 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/13 = 0.00030 epoch 2 (K=40.0), pass 1, starting sse = 3095.12 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/13 = 0.00033 epoch 3 (K=160.0), pass 1, starting sse = 316.22 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.09/14 = 0.00662 epoch 4 (K=640.0), pass 1, starting sse = 16.26 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.13/20 = 0.00644 final distance error %100000.00 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.0228 hours FSRUNTIME@ mris_sphere 0.0228 hours 1 threads #VMPC# mris_sphere VmPeak 494568 mris_sphere done #-------------------------------------------- #@# QSphere rh Sun Dec 21 19:24:42 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 scaling brain by 0.294... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 0.94 +- 0.56 (0.00-->6.09) (max @ vno 112458 --> 112459) face area 0.02 +- 0.03 (-0.07-->0.50) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.640, avgs=0 005/300: dt: 0.9000, rms radial error=176.380, avgs=0 010/300: dt: 0.9000, rms radial error=175.822, avgs=0 015/300: dt: 0.9000, rms radial error=175.089, avgs=0 020/300: dt: 0.9000, rms radial error=174.254, avgs=0 025/300: dt: 0.9000, rms radial error=173.360, avgs=0 030/300: dt: 0.9000, rms radial error=172.439, avgs=0 035/300: dt: 0.9000, rms radial error=171.501, avgs=0 040/300: dt: 0.9000, rms radial error=170.556, avgs=0 045/300: dt: 0.9000, rms radial error=169.610, avgs=0 050/300: dt: 0.9000, rms radial error=168.664, avgs=0 055/300: dt: 0.9000, rms radial error=167.721, avgs=0 060/300: dt: 0.9000, rms radial error=166.781, avgs=0 065/300: dt: 0.9000, rms radial error=165.846, avgs=0 070/300: dt: 0.9000, rms radial error=164.915, avgs=0 075/300: dt: 0.9000, rms radial error=163.989, avgs=0 080/300: dt: 0.9000, rms radial error=163.068, avgs=0 085/300: dt: 0.9000, rms radial error=162.151, avgs=0 090/300: dt: 0.9000, rms radial error=161.240, avgs=0 095/300: dt: 0.9000, rms radial error=160.333, avgs=0 100/300: dt: 0.9000, rms radial error=159.431, avgs=0 105/300: dt: 0.9000, rms radial error=158.534, avgs=0 110/300: dt: 0.9000, rms radial error=157.642, avgs=0 115/300: dt: 0.9000, rms radial error=156.754, avgs=0 120/300: dt: 0.9000, rms radial error=155.872, avgs=0 125/300: dt: 0.9000, rms radial error=154.994, avgs=0 130/300: dt: 0.9000, rms radial error=154.121, avgs=0 135/300: dt: 0.9000, rms radial error=153.253, avgs=0 140/300: dt: 0.9000, rms radial error=152.390, avgs=0 145/300: dt: 0.9000, rms radial error=151.532, avgs=0 150/300: dt: 0.9000, rms radial error=150.678, avgs=0 155/300: dt: 0.9000, rms radial error=149.829, avgs=0 160/300: dt: 0.9000, rms radial error=148.985, avgs=0 165/300: dt: 0.9000, rms radial error=148.146, avgs=0 170/300: dt: 0.9000, rms radial error=147.311, avgs=0 175/300: dt: 0.9000, rms radial error=146.480, avgs=0 180/300: dt: 0.9000, rms radial error=145.655, avgs=0 185/300: dt: 0.9000, rms radial error=144.834, avgs=0 190/300: dt: 0.9000, rms radial error=144.017, avgs=0 195/300: dt: 0.9000, rms radial error=143.205, avgs=0 200/300: dt: 0.9000, rms radial error=142.400, avgs=0 205/300: dt: 0.9000, rms radial error=141.599, avgs=0 210/300: dt: 0.9000, rms radial error=140.803, avgs=0 215/300: dt: 0.9000, rms radial error=140.012, avgs=0 220/300: dt: 0.9000, rms radial error=139.225, avgs=0 225/300: dt: 0.9000, rms radial error=138.442, avgs=0 230/300: dt: 0.9000, rms radial error=137.663, avgs=0 235/300: dt: 0.9000, rms radial error=136.889, avgs=0 240/300: dt: 0.9000, rms radial error=136.119, avgs=0 245/300: dt: 0.9000, rms radial error=135.354, avgs=0 250/300: dt: 0.9000, rms radial error=134.592, avgs=0 255/300: dt: 0.9000, rms radial error=133.835, avgs=0 260/300: dt: 0.9000, rms radial error=133.082, avgs=0 265/300: dt: 0.9000, rms radial error=132.333, avgs=0 270/300: dt: 0.9000, rms radial error=131.588, avgs=0 275/300: dt: 0.9000, rms radial error=130.848, avgs=0 280/300: dt: 0.9000, rms radial error=130.112, avgs=0 285/300: dt: 0.9000, rms radial error=129.380, avgs=0 290/300: dt: 0.9000, rms radial error=128.652, avgs=0 295/300: dt: 0.9000, rms radial error=127.928, avgs=0 300/300: dt: 0.9000, rms radial error=127.209, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 17681.35 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/13 = 0.00031 epoch 2 (K=40.0), pass 1, starting sse = 3007.14 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/13 = 0.00019 epoch 3 (K=160.0), pass 1, starting sse = 305.38 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.13/18 = 0.00746 epoch 4 (K=640.0), pass 1, starting sse = 12.69 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.26/28 = 0.00924 final distance error %100000.00 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.0255 hours FSRUNTIME@ mris_sphere 0.0255 hours 1 threads #VMPC# mris_sphere VmPeak 491408 mris_sphere done #@# Fix Topology lh Sun Dec 21 19:26:14 CST 2025 mris_fix_topology -threads 1 -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 -threads 1 sub-06DJHEV0_ses-00A lh Setting OMP_NUM_THREADS=1 reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 Setting OMP_NUM_THREADS=1 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 8.0.0 8.0.0 before topology correction, eno=-16 (nv=150818, nf=301668, ne=452502, g=9) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 10 iterations marking ambiguous vertices... 2404 ambiguous faces found in tessellation segmenting defects... 19 defects found, arbitrating ambiguous regions... analyzing neighboring defects... 19 defects to be corrected 0 vertices coincident reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.7006 (-4.8503) -vertex loglikelihood: -6.7841 (-3.3921) -normal dot loglikelihood: -3.6816 (-3.6816) -quad curv loglikelihood: -6.1632 (-3.0816) Total Loglikelihood : -26.3296 CORRECTING DEFECT 0 (vertices=6, convex hull=14, v0=2822) After retessellation of defect 0 (v0=2822), euler #=-16 (149367,447572,298189) : difference with theory (-16) = 0 CORRECTING DEFECT 1 (vertices=26, convex hull=62, v0=14029) After retessellation of defect 1 (v0=14029), euler #=-15 (149384,447648,298249) : difference with theory (-15) = 0 CORRECTING DEFECT 2 (vertices=35, convex hull=65, v0=37999) After retessellation of defect 2 (v0=37999), euler #=-14 (149403,447730,298313) : difference with theory (-14) = 0 CORRECTING DEFECT 3 (vertices=12, convex hull=26, v0=67053) After retessellation of defect 3 (v0=67053), euler #=-13 (149406,447745,298326) : difference with theory (-13) = 0 CORRECTING DEFECT 4 (vertices=22, convex hull=31, v0=69242) After retessellation of defect 4 (v0=69242), euler #=-12 (149410,447768,298346) : difference with theory (-12) = 0 CORRECTING DEFECT 5 (vertices=5, convex hull=23, v0=70402) After retessellation of defect 5 (v0=70402), euler #=-11 (149412,447780,298357) : difference with theory (-11) = 0 CORRECTING DEFECT 6 (vertices=18, convex hull=59, v0=73477) After retessellation of defect 6 (v0=73477), euler #=-10 (149422,447831,298399) : difference with theory (-10) = 0 CORRECTING DEFECT 7 (vertices=24, convex hull=65, v0=79513) After retessellation of defect 7 (v0=79513), euler #=-9 (149434,447894,298451) : difference with theory (-9) = 0 CORRECTING DEFECT 8 (vertices=13, convex hull=21, v0=92920) After retessellation of defect 8 (v0=92920), euler #=-8 (149440,447917,298469) : difference with theory (-8) = 0 CORRECTING DEFECT 9 (vertices=162, convex hull=127, v0=108165) After retessellation of defect 9 (v0=108165), euler #=-7 (149501,448159,298651) : difference with theory (-7) = 0 CORRECTING DEFECT 10 (vertices=39, convex hull=47, v0=108355) After retessellation of defect 10 (v0=108355), euler #=-6 (149509,448202,298687) : difference with theory (-6) = 0 CORRECTING DEFECT 11 (vertices=334, convex hull=100, v0=109357) normal vector of length zero at vertex 149809 with 3 faces normal vector of length zero at vertex 149809 with 3 faces After retessellation of defect 11 (v0=109357), euler #=-5 (149520,448285,298760) : difference with theory (-5) = 0 CORRECTING DEFECT 12 (vertices=265, convex hull=75, v0=109807) After retessellation of defect 12 (v0=109807), euler #=-4 (149551,448409,298854) : difference with theory (-4) = 0 CORRECTING DEFECT 13 (vertices=236, convex hull=226, v0=112556) normal vector of length zero at vertex 150328 with 6 faces normal vector of length zero at vertex 150337 with 5 faces normal vector of length zero at vertex 150334 with 4 faces normal vector of length zero at vertex 150334 with 4 faces normal vector of length zero at vertex 150334 with 4 faces normal vector of length zero at vertex 150333 with 4 faces normal vector of length zero at vertex 150334 with 4 faces normal vector of length zero at vertex 150334 with 4 faces After retessellation of defect 13 (v0=112556), euler #=-3 (149672,448874,299199) : difference with theory (-3) = 0 CORRECTING DEFECT 14 (vertices=107, convex hull=142, v0=113932) After retessellation of defect 14 (v0=113932), euler #=-2 (149697,449015,299316) : difference with theory (-2) = 0 CORRECTING DEFECT 15 (vertices=14, convex hull=33, v0=117877) After retessellation of defect 15 (v0=117877), euler #=-1 (149700,449035,299334) : difference with theory (-1) = 0 CORRECTING DEFECT 16 (vertices=112, convex hull=106, v0=124384) After retessellation of defect 16 (v0=124384), euler #=0 (149738,449196,299458) : difference with theory (0) = 0 CORRECTING DEFECT 17 (vertices=5, convex hull=15, v0=130669) After retessellation of defect 17 (v0=130669), euler #=1 (149739,449202,299464) : difference with theory (1) = 0 CORRECTING DEFECT 18 (vertices=17, convex hull=29, v0=149524) After retessellation of defect 18 (v0=149524), euler #=2 (149741,449217,299478) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.22 (0.08-->10.42) (max @ vno 111233 --> 115165) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.22 (0.08-->10.42) (max @ vno 111233 --> 115165) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 59 mutations (34.1%), 114 crossovers (65.9%), 66 vertices were eliminated building final representation... 1077 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=149741, nf=299478, ne=449217, g=0) writing corrected surface to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 204 intersecting 001: 23 intersecting 002: 2 intersecting terminating search with 0 intersecting topology fixing took 1.0 minutes FSRUNTIME@ mris_fix_topology lh 0.0164 hours 1 threads #VMPC# mris_fix_topology VmPeak 765432 #@# Fix Topology rh Sun Dec 21 19:27:13 CST 2025 mris_fix_topology -threads 1 -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 -threads 1 sub-06DJHEV0_ses-00A rh Setting OMP_NUM_THREADS=1 reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 Setting OMP_NUM_THREADS=1 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 8.0.0 8.0.0 before topology correction, eno=-18 (nv=148644, nf=297324, ne=445986, g=10) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 9 iterations marking ambiguous vertices... 1123 ambiguous faces found in tessellation segmenting defects... 16 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 6 into 7 15 defects to be corrected 0 vertices coincident reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.8378 (-4.9189) -vertex loglikelihood: -6.7812 (-3.3906) -normal dot loglikelihood: -3.6695 (-3.6695) -quad curv loglikelihood: -6.2034 (-3.1017) Total Loglikelihood : -26.4920 CORRECTING DEFECT 0 (vertices=51, convex hull=75, v0=13468) After retessellation of defect 0 (v0=13468), euler #=-13 (147961,443556,295582) : difference with theory (-12) = 1 CORRECTING DEFECT 1 (vertices=37, convex hull=41, v0=16501) After retessellation of defect 1 (v0=16501), euler #=-12 (147967,443588,295609) : difference with theory (-11) = 1 CORRECTING DEFECT 2 (vertices=19, convex hull=55, v0=20897) After retessellation of defect 2 (v0=20897), euler #=-11 (147978,443641,295652) : difference with theory (-10) = 1 CORRECTING DEFECT 3 (vertices=18, convex hull=55, v0=36922) After retessellation of defect 3 (v0=36922), euler #=-10 (147988,443689,295691) : difference with theory (-9) = 1 CORRECTING DEFECT 4 (vertices=28, convex hull=74, v0=53538) After retessellation of defect 4 (v0=53538), euler #=-9 (148002,443759,295748) : difference with theory (-8) = 1 CORRECTING DEFECT 5 (vertices=5, convex hull=30, v0=63610) After retessellation of defect 5 (v0=63610), euler #=-8 (148004,443774,295762) : difference with theory (-7) = 1 CORRECTING DEFECT 6 (vertices=23, convex hull=40, v0=69199) After retessellation of defect 6 (v0=69199), euler #=-6 (148006,443792,295780) : difference with theory (-6) = 0 CORRECTING DEFECT 7 (vertices=6, convex hull=28, v0=91518) After retessellation of defect 7 (v0=91518), euler #=-5 (148009,443808,295794) : difference with theory (-5) = 0 CORRECTING DEFECT 8 (vertices=174, convex hull=167, v0=104860) After retessellation of defect 8 (v0=104860), euler #=-4 (148018,443915,295893) : difference with theory (-4) = 0 CORRECTING DEFECT 9 (vertices=93, convex hull=43, v0=107907) After retessellation of defect 9 (v0=107907), euler #=-3 (148035,443986,295948) : difference with theory (-3) = 0 CORRECTING DEFECT 10 (vertices=63, convex hull=102, v0=111492) After retessellation of defect 10 (v0=111492), euler #=-2 (148059,444097,296036) : difference with theory (-2) = 0 CORRECTING DEFECT 11 (vertices=9, convex hull=22, v0=112623) After retessellation of defect 11 (v0=112623), euler #=-1 (148061,444109,296047) : difference with theory (-1) = 0 CORRECTING DEFECT 12 (vertices=89, convex hull=65, v0=113542) After retessellation of defect 12 (v0=113542), euler #=0 (148069,444161,296092) : difference with theory (0) = 0 CORRECTING DEFECT 13 (vertices=85, convex hull=86, v0=116645) After retessellation of defect 13 (v0=116645), euler #=1 (148101,444291,296191) : difference with theory (1) = 0 CORRECTING DEFECT 14 (vertices=13, convex hull=19, v0=120538) After retessellation of defect 14 (v0=120538), euler #=2 (148104,444306,296204) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.88 +- 0.21 (0.12-->7.09) (max @ vno 105692 --> 109106) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.88 +- 0.21 (0.12-->7.09) (max @ vno 105692 --> 109106) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 71 mutations (39.4%), 109 crossovers (60.6%), 47 vertices were eliminated building final representation... 540 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=148104, nf=296204, ne=444306, g=0) writing corrected surface to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 129 intersecting 001: 8 intersecting 002: 3 intersecting terminating search with 0 intersecting topology fixing took 0.7 minutes FSRUNTIME@ mris_fix_topology rh 0.0122 hours 1 threads #VMPC# mris_fix_topology VmPeak 763052 mris_euler_number ../surf/lh.orig.premesh euler # = v-e+f = 2g-2: 149741 - 449217 + 299478 = 2 --> 0 holes F =2V-4: 299478 = 299482-4 (0) 2E=3F: 898434 = 898434 (0) total defect index = 0 mris_euler_number ../surf/rh.orig.premesh euler # = v-e+f = 2g-2: 148104 - 444306 + 296204 = 2 --> 0 holes F =2V-4: 296204 = 296208-4 (0) 2E=3F: 888612 = 888612 (0) total defect index = 0 Sun Dec 21 19:27:58 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/defect2seg --s sub-06DJHEV0_ses-00A --cortex freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a defect2seg 8.0.0 Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1356743 mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.orig.nofix /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.nofix.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 17 non-cortical segments detected only using segment with 7720 vertices erasing segment 0 (vno[0] = 35023) erasing segment 1 (vno[0] = 41113) erasing segment 3 (vno[0] = 93091) erasing segment 4 (vno[0] = 95408) erasing segment 5 (vno[0] = 98697) erasing segment 6 (vno[0] = 103150) erasing segment 7 (vno[0] = 103955) erasing segment 8 (vno[0] = 106016) erasing segment 9 (vno[0] = 107082) erasing segment 10 (vno[0] = 109287) erasing segment 11 (vno[0] = 109341) erasing segment 12 (vno[0] = 110624) erasing segment 13 (vno[0] = 111598) erasing segment 14 (vno[0] = 112805) erasing segment 15 (vno[0] = 112818) erasing segment 16 (vno[0] = 112846) mri_label2vol --defects /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.orig.nofix /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.defect_labels /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz 1000 0 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/surface.defects.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.nofix.cortex.label mri_label2vol supposed to be reproducible but seed not set Contraining to label /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.nofix.cortex.label Changing input type 0 to MRI_INT Converting defects to volume: offset=1000, merge=0 Writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/surface.defects.mgz mris_defects_pointset -s /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.orig.nofix -d /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.defect_labels -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.defects.pointset --label /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.nofix.cortex.label Reading in surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.orig.nofix Reading in defect segmentation /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.defect_labels Reading in label /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.nofix.cortex.label #VMPC# mris_defects_pointset 196200 mris_defects_pointset done mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.orig.nofix /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.nofix.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 14 non-cortical segments detected only using segment with 7842 vertices erasing segment 0 (vno[0] = 19148) erasing segment 1 (vno[0] = 50006) erasing segment 3 (vno[0] = 91759) erasing segment 4 (vno[0] = 94134) erasing segment 5 (vno[0] = 107939) erasing segment 6 (vno[0] = 109078) erasing segment 7 (vno[0] = 109091) erasing segment 8 (vno[0] = 109103) erasing segment 9 (vno[0] = 110158) erasing segment 10 (vno[0] = 110193) erasing segment 11 (vno[0] = 111234) erasing segment 12 (vno[0] = 112397) erasing segment 13 (vno[0] = 112498) mri_label2vol --defects /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.orig.nofix /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.defect_labels /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/surface.defects.mgz 2000 1 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/surface.defects.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.nofix.cortex.label mri_label2vol supposed to be reproducible but seed not set Contraining to label /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.nofix.cortex.label Converting defects to volume: offset=2000, merge=1 Writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/surface.defects.mgz mris_defects_pointset -s /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.orig.nofix -d /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.defect_labels -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.defects.pointset --label /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.nofix.cortex.label Reading in surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.orig.nofix Reading in defect segmentation /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.defect_labels Reading in label /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.nofix.cortex.label #VMPC# mris_defects_pointset 193696 mris_defects_pointset done Started at Sun Dec 21 19:27:58 CST 2025 Ended at Sun Dec 21 19:28:18 CST 2025 Defect2seg-Run-Time-Sec 20 Defect2seg-Run-Time-Min 0.40 Defect2seg-Run-Time-Hours 0.01 tkmeditfv sub-06DJHEV0_ses-00A brain.finalsurfs.mgz -defect defect2seg Done mris_remesh --remesh --iters 3 --input /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.orig.premesh --output /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.orig iters = 3 standard remeshing without target adjusted l: 0.708445 remeshing to edge length 0.708445 with 3 iterations avg qual before : 0.889754 after: 0.970955 Removing intersections Remeshed surface quality stats nv0 = 149741 nv = 155887 1.04104 Area 311770 0.30039 0.03357 0.085167 0.4631 Corner 935310 60.00000 8.83178 17.981445 142.8665 Edge 467655 0.84091 0.08244 0.466317 1.2629 Hinge 467655 9.72785 10.52353 0.000000 162.4529 mris_remesh done mris_remesh --remesh --iters 3 --input /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.orig.premesh --output /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.orig iters = 3 standard remeshing without target adjusted l: 0.707221 remeshing to edge length 0.707221 with 3 iterations avg qual before : 0.891822 after: 0.971361 Removing intersections Remeshed surface quality stats nv0 = 148104 nv = 154504 1.04321 Area 309004 0.29951 0.03311 0.077922 0.4698 Corner 927012 60.00000 8.76720 18.501328 141.6138 Edge 463506 0.83957 0.08165 0.460643 1.2504 Hinge 463506 9.76784 10.62684 0.000000 124.6378 mris_remesh done /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.00 hours Found 0 intersections writing corrected surface to ../surf/lh.orig rm -f ../surf/lh.inflated /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours Found 0 intersections writing corrected surface to ../surf/rh.orig rm -f ../surf/rh.inflated #-------------------------------------------- #@# AutoDetGWStats lh Sun Dec 21 19:29:10 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh 8.0.0 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh border white: 261611 voxels (1.56%) border gray 307600 voxels (1.83%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/lh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=43871, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (98.0): 97.6 +- 9.8 [70.0 --> 110.0] CCS GM (69.0) : 69.9 +- 9.7 [30.0 --> 110.0] white_mean = 97.5665 +/- 9.82192, gray_mean = 69.8838 +/- 9.68125 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=168 nbins=169 intensity peaks found at WM=102+-6.1, GM=66+-6.1 white_mode = 102, gray_mode = 66 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 56.3 (was 70.000000) setting MAX_BORDER_WHITE to 111.8 (was 105.000000) setting MIN_BORDER_WHITE to 66.0 (was 85.000000) setting MAX_CSF to 46.6 (was 40.000000) setting MAX_GRAY to 92.2 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 56.3 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 37.0 (was 40.000000) When placing the white surface white_border_hi = 111.822; white_border_low = 66; white_outside_low = 56.3188; white_inside_hi = 120; white_outside_hi = 111.822; When placing the pial surface pial_border_hi = 56.3188; pial_border_low = 36.9563; pial_outside_low = 10; pial_inside_hi = 92.1781; pial_outside_hi = 51.4781; #VMPC# mris_autodet_gwstats VmPeak 273144 mris_autodet_gwstats done #-------------------------------------------- #@# AutoDetGWStats rh Sun Dec 21 19:29:12 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh 8.0.0 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh border white: 261611 voxels (1.56%) border gray 307600 voxels (1.83%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/rh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=43871, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (98.0): 97.6 +- 9.8 [70.0 --> 110.0] CCS GM (69.0) : 69.9 +- 9.7 [30.0 --> 110.0] white_mean = 97.5665 +/- 9.82192, gray_mean = 69.8838 +/- 9.68125 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=168 nbins=169 intensity peaks found at WM=103+-7.0, GM=66+-6.1 white_mode = 103, gray_mode = 66 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 56.3 (was 70.000000) setting MAX_BORDER_WHITE to 112.8 (was 105.000000) setting MIN_BORDER_WHITE to 66.0 (was 85.000000) setting MAX_CSF to 46.6 (was 40.000000) setting MAX_GRAY to 93.2 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 56.3 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 37.0 (was 40.000000) When placing the white surface white_border_hi = 112.822; white_border_low = 66; white_outside_low = 56.3188; white_inside_hi = 120; white_outside_hi = 112.822; When placing the pial surface pial_border_hi = 56.3188; pial_border_low = 36.9563; pial_outside_low = 10; pial_inside_hi = 93.1781; pial_outside_hi = 51.4781; #VMPC# mris_autodet_gwstats VmPeak 270968 mris_autodet_gwstats done #-------------------------------------------- #@# WhitePreAparc lh Sun Dec 21 19:29:15 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz Reading in input surface ../surf/lh.orig Smoothing surface before ripping with 5 iterations Area 311770 0.26400 0.06386 0.002348 0.5501 Corner 935310 60.00000 9.83001 5.513463 138.8071 Edge 467655 0.78484 0.11653 0.042078 1.3162 Hinge 467655 6.49765 6.74087 0.000027 147.9236 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1303 MRIclipBrightWM(): nthresh=43871, wmmin=5, clip=110 MRIfindBrightNonWM(): 22 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1303 Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7287, nmarked2=0, nripped=7287 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 74 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 77944: xyz = (-39.7035,-7.99364,-6.262) oxyz = (-39.7035,-7.99364,-6.262) wxzy = (-39.7035,-7.99364,-6.262) pxyz = (0,0,0) CBVO Creating mask 155887 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7361 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7407, nmarked2=0, nripped=7407 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 0 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 111.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 111.8219150; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 841124 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=2 had to be increased for 242 vertices, nripped=7407 mean border=77.9, 82 (81) missing vertices, mean dist 0.3 [0.5 (%38.2)->0.8 (%61.8))] %76 local maxima, %19 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1520 min Finding expansion regions mean absolute distance = 0.67 +- 0.76 5606 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-02-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=4199398.5, rms=11.650 001: dt: 0.5000, sse=2256564.5, rms=8.393 (27.959%) 002: dt: 0.5000, sse=1431190.8, rms=6.538 (22.101%) 003: dt: 0.5000, sse=1044615.8, rms=5.447 (16.688%) 004: dt: 0.5000, sse=841726.4, rms=4.777 (12.300%) 005: dt: 0.5000, sse=734489.7, rms=4.371 (8.509%) 006: dt: 0.5000, sse=678743.4, rms=4.144 (5.186%) 007: dt: 0.5000, sse=651965.6, rms=4.014 (3.138%) 008: dt: 0.5000, sse=634179.9, rms=3.935 (1.971%) 009: dt: 0.5000, sse=624270.2, rms=3.882 (1.342%) rms = 3.8407/3.8820, sse=614203.0/624270.2, time step reduction 1 of 3 to 0.250 0 0 1 010: dt: 0.5000, sse=614202.9, rms=3.841 (1.063%) 011: dt: 0.2500, sse=367828.7, rms=2.520 (34.390%) 012: dt: 0.2500, sse=312428.2, rms=2.123 (15.741%) 013: dt: 0.2500, sse=300676.0, rms=2.024 (4.672%) 014: dt: 0.2500, sse=291950.4, rms=1.943 (4.019%) rms = 1.9127/1.9427, sse=288345.8/291950.4, time step reduction 2 of 3 to 0.125 0 0 1 015: dt: 0.2500, sse=288345.8, rms=1.913 (1.547%) 016: dt: 0.1250, sse=276797.3, rms=1.805 (5.641%) rms = 1.7849/1.8048, sse=274963.1/276797.3, time step reduction 3 of 3 to 0.062 0 0 1 017: dt: 0.1250, sse=274963.1, rms=1.785 (1.100%) maximum number of reductions reached, breaking from loop positioning took 1.2 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7407 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7560, nmarked2=0, nripped=7560 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 13 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 111.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 111.8219150; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 1846236 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=1 had to be increased for 209 vertices, nripped=7573 mean border=82.1, 91 (9) missing vertices, mean dist -0.2 [0.3 (%79.8)->0.3 (%20.2))] %86 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1021 min Finding expansion regions mean absolute distance = 0.33 +- 0.45 4063 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-02-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1147391.9, rms=5.528 018: dt: 0.5000, sse=625598.8, rms=3.574 (35.355%) rms = 3.8457/3.5736, sse=678549.4/625598.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=443805.4, rms=2.612 (26.895%) 020: dt: 0.2500, sse=363219.9, rms=2.024 (22.529%) 021: dt: 0.2500, sse=332480.6, rms=1.745 (13.761%) 022: dt: 0.2500, sse=323148.7, rms=1.641 (5.989%) 023: dt: 0.2500, sse=317635.7, rms=1.574 (4.086%) rms = 1.5453/1.5738, sse=315052.2/317635.7, time step reduction 2 of 3 to 0.125 0 0 1 024: dt: 0.2500, sse=315052.2, rms=1.545 (1.814%) 025: dt: 0.1250, sse=306788.9, rms=1.441 (6.743%) rms = 1.4244/1.4411, sse=306130.5/306788.9, time step reduction 3 of 3 to 0.062 0 0 1 026: dt: 0.1250, sse=306130.5, rms=1.424 (1.157%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7573 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 1 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7649, nmarked2=0, nripped=7649 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 12 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 111.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 111.8219150; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 2028064 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 281 vertices, nripped=7661 mean border=84.4, 101 (5) missing vertices, mean dist -0.1 [0.2 (%71.5)->0.2 (%28.5))] %91 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0549 min Finding expansion regions mean absolute distance = 0.21 +- 0.30 3459 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-02-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=541544.2, rms=3.190 rms = 3.3237/3.1896, sse=585311.2/541544.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 027: dt: 0.2500, sse=386896.6, rms=2.212 (30.655%) 028: dt: 0.2500, sse=318443.5, rms=1.537 (30.525%) 029: dt: 0.2500, sse=307622.6, rms=1.429 (7.008%) rms = 1.4079/1.4290, sse=305076.0/307622.6, time step reduction 2 of 3 to 0.125 0 0 1 030: dt: 0.2500, sse=305076.0, rms=1.408 (1.473%) 031: dt: 0.1250, sse=294524.4, rms=1.284 (8.806%) rms = 1.2672/1.2840, sse=291788.1/294524.4, time step reduction 3 of 3 to 0.062 0 0 1 032: dt: 0.1250, sse=291788.1, rms=1.267 (1.303%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7661 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 1 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7710, nmarked2=0, nripped=7710 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 6 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 111.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 111.8219150; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 2169392 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 341 vertices, nripped=7716 mean border=85.1, 195 (3) missing vertices, mean dist -0.0 [0.2 (%55.3)->0.2 (%44.7))] %92 local maxima, % 2 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0347 min Finding expansion regions mean absolute distance = 0.18 +- 0.26 3288 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-02-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=311784.4, rms=1.533 rms = 2.0007/1.5332, sse=375008.8/311784.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 033: dt: 0.2500, sse=276052.1, rms=1.089 (28.956%) 034: dt: 0.2500, sse=271459.5, rms=0.963 (11.557%) rms = 0.9935/0.9634, sse=274108.8/271459.5, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step rms = 0.9516/0.9634, sse=270431.3/271459.5, time step reduction 3 of 3 to 0.062 0 0 1 035: dt: 0.1250, sse=270431.3, rms=0.952 (1.224%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.88 minutes Writing output to ../surf/lh.white.preaparc #VMPC# mris_place_surfaces VmPeak 2241212 mris_place_surface done #-------------------------------------------- #@# WhitePreAparc rh Sun Dec 21 19:32:13 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz Reading in input surface ../surf/rh.orig Smoothing surface before ripping with 5 iterations Area 309004 0.26277 0.06343 0.001464 0.6302 Corner 927012 60.00000 9.86516 6.315999 155.7704 Edge 463506 0.78307 0.11618 0.050518 1.3345 Hinge 463506 6.53410 6.83429 0.000004 135.2334 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1303 MRIclipBrightWM(): nthresh=43871, wmmin=5, clip=110 MRIfindBrightNonWM(): 22 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1303 Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 #FML# MRISripMidline(): nmarked=7021, nmarked2=0, nripped=7021 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 138 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 77252: xyz = (5.61863,-7.32655,55.9178) oxyz = (5.61863,-7.32655,55.9178) wxzy = (5.61863,-7.32655,55.9178) pxyz = (0,0,0) CBVO Creating mask 154504 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7159 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7219, nmarked2=0, nripped=7219 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 0 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 112.8219150; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 819432 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=2 had to be increased for 182 vertices, nripped=7219 mean border=77.8, 92 (92) missing vertices, mean dist 0.3 [0.5 (%38.4)->0.8 (%61.6))] %76 local maxima, %19 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1482 min Finding expansion regions mean absolute distance = 0.66 +- 0.76 5110 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-02-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=4202241.5, rms=11.705 001: dt: 0.5000, sse=2246930.8, rms=8.415 (28.108%) 002: dt: 0.5000, sse=1434968.9, rms=6.577 (21.841%) 003: dt: 0.5000, sse=1054166.4, rms=5.497 (16.429%) 004: dt: 0.5000, sse=853682.9, rms=4.832 (12.095%) 005: dt: 0.5000, sse=744538.8, rms=4.415 (8.627%) 006: dt: 0.5000, sse=690606.4, rms=4.199 (4.897%) 007: dt: 0.5000, sse=669120.6, rms=4.059 (3.319%) 008: dt: 0.5000, sse=645976.8, rms=3.991 (1.690%) 009: dt: 0.5000, sse=633697.1, rms=3.934 (1.433%) rms = 3.8985/3.9336, sse=633682.4/633697.1, time step reduction 1 of 3 to 0.250 0 0 1 010: dt: 0.5000, sse=633682.4, rms=3.899 (0.892%) 011: dt: 0.2500, sse=379375.4, rms=2.558 (34.388%) 012: dt: 0.2500, sse=317839.8, rms=2.157 (15.681%) 013: dt: 0.2500, sse=307816.3, rms=2.055 (4.743%) 014: dt: 0.2500, sse=296216.0, rms=1.975 (3.859%) rms = 1.9381/1.9752, sse=295770.7/296216.0, time step reduction 2 of 3 to 0.125 0 0 1 015: dt: 0.2500, sse=295770.8, rms=1.938 (1.877%) 016: dt: 0.1250, sse=280979.6, rms=1.830 (5.583%) rms = 1.8112/1.8299, sse=280029.1/280979.6, time step reduction 3 of 3 to 0.062 0 0 1 017: dt: 0.1250, sse=280029.1, rms=1.811 (1.025%) maximum number of reductions reached, breaking from loop positioning took 1.1 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7219 removing 1 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7317, nmarked2=0, nripped=7317 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 13 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 112.8219150; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 1858276 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=1 had to be increased for 248 vertices, nripped=7330 mean border=81.8, 95 (10) missing vertices, mean dist -0.2 [0.3 (%78.9)->0.3 (%21.1))] %86 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0992 min Finding expansion regions mean absolute distance = 0.32 +- 0.46 3877 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-02-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1115168.8, rms=5.441 018: dt: 0.5000, sse=631243.0, rms=3.616 (33.532%) rms = 3.9162/3.6164, sse=697507.2/631243.0, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=446772.1, rms=2.624 (27.449%) 020: dt: 0.2500, sse=370720.0, rms=2.053 (21.752%) 021: dt: 0.2500, sse=343830.3, rms=1.777 (13.430%) 022: dt: 0.2500, sse=331699.0, rms=1.681 (5.445%) 023: dt: 0.2500, sse=324888.0, rms=1.618 (3.700%) rms = 1.5938/1.6184, sse=320042.4/324888.0, time step reduction 2 of 3 to 0.125 0 0 1 024: dt: 0.2500, sse=320042.4, rms=1.594 (1.518%) 025: dt: 0.1250, sse=310568.5, rms=1.485 (6.799%) rms = 1.4669/1.4854, sse=309229.6/310568.5, time step reduction 3 of 3 to 0.062 0 0 1 026: dt: 0.1250, sse=309229.6, rms=1.467 (1.250%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7330 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 1 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7386, nmarked2=0, nripped=7386 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 7 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 112.8219150; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 2005004 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 335 vertices, nripped=7393 mean border=84.1, 116 (4) missing vertices, mean dist -0.1 [0.2 (%71.2)->0.2 (%28.8))] %91 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0533 min Finding expansion regions mean absolute distance = 0.21 +- 0.31 3781 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-02-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=538366.0, rms=3.176 rms = 3.3612/3.1762, sse=600548.4/538366.0, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 027: dt: 0.2500, sse=386542.2, rms=2.200 (30.735%) 028: dt: 0.2500, sse=323478.8, rms=1.546 (29.716%) 029: dt: 0.2500, sse=311770.0, rms=1.441 (6.824%) rms = 1.4227/1.4407, sse=311721.5/311770.0, time step reduction 2 of 3 to 0.125 0 0 1 030: dt: 0.2500, sse=311721.5, rms=1.423 (1.248%) 031: dt: 0.1250, sse=297343.5, rms=1.300 (8.594%) rms = 1.2849/1.3005, sse=294365.8/297343.5, time step reduction 3 of 3 to 0.062 0 0 1 032: dt: 0.1250, sse=294365.8, rms=1.285 (1.200%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7393 removing 1 vertices from ripped group in thread:0 removing 1 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7397, nmarked2=0, nripped=7397 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 5 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 112.8219150; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 2156608 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 368 vertices, nripped=7402 mean border=84.8, 217 (1) missing vertices, mean dist -0.0 [0.2 (%55.0)->0.2 (%45.0))] %92 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0337 min Finding expansion regions mean absolute distance = 0.18 +- 0.27 3503 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-02-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=314671.5, rms=1.549 rms = 2.0245/1.5493, sse=370097.2/314671.5, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 033: dt: 0.2500, sse=280163.8, rms=1.117 (27.923%) 034: dt: 0.2500, sse=276588.8, rms=0.995 (10.926%) rms = 1.0154/0.9947, sse=276478.7/276588.8, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 0.9847/0.9947, sse=275416.3/276588.8, time step reduction 3 of 3 to 0.062 0 0 1 035: dt: 0.1250, sse=275416.3, rms=0.985 (1.007%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.84 minutes Writing output to ../surf/rh.white.preaparc #VMPC# mris_place_surfaces VmPeak 2227740 mris_place_surface done #-------------------------------------------- #@# CortexLabel lh Sun Dec 21 19:35:08 CST 2025 Sun Dec 21 19:35:08 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex --s sub-06DJHEV0_ses-00A --lh --fix-ga -rwxr-x--- 1 root kdamme 14140 May 28 2025 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1361518 mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white.preaparc /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.cortex-no-ga.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 10 non-cortical segments detected only using segment with 8833 vertices erasing segment 0 (vno[0] = 13623) erasing segment 1 (vno[0] = 20704) erasing segment 3 (vno[0] = 78759) erasing segment 4 (vno[0] = 81957) erasing segment 5 (vno[0] = 84783) erasing segment 6 (vno[0] = 93811) erasing segment 7 (vno[0] = 95076) erasing segment 8 (vno[0] = 99970) erasing segment 9 (vno[0] = 128148) mri_binarize --match 3201 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/gyrus-ambiens.lh.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri cmdline mri_binarize --match 3201 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/gyrus-ambiens.lh.mgz sysname Linux hostname c-02-11 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/entowm.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/gyrus-ambiens.lh.mgz Binarizing based on matching values nMatch 1 0 3201 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 268 values in range Counting number of voxels in first frame Found 268 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/gyrus-ambiens.lh.mgz Count: 268 268.000000 16777216 0.001597 mri_binarize done mri_vol2surf --regheader sub-06DJHEV0_ses-00A --hemi lh --surf white.preaparc --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/gyrus-ambiens.lh.mgz --projdist-max -1 0 .1 --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.mgz INFO: Delta=0.1 > Max=0, may be ok, maybe not srcvol = /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/gyrus-ambiens.lh.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white.preaparc hemi = lh ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 1 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white.preaparc Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 0 0.1 1 -1 -1 0 using old 2 -0.9 -1 0 using old 3 -0.8 -1 0 using old 4 -0.7 -1 0 using old 5 -0.6 -1 0 using old 6 -0.5 -1 0 using old 7 -0.4 -1 0 using old 8 -0.3 -1 0 using old 9 -0.2 -1 0 using old 10 -0.0999999 -1 0 using old Done mapping volume to surface Number of source voxels hit = 104227 Writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.mgz Dim: 155887 1 1 mri_vol2surf done mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white.preaparc /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.white.preaparc.nxyz.mgz mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white.preaparc /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.white.preaparc.nxyz.mgz Reading in /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white.preaparc Converting surface XYZ coordinates from tkr to scanner space. Outputting normals /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.white.preaparc.nxyz.mgz mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nx.mask.mgz --min +0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri cmdline mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nx.mask.mgz --min +0.01 sysname Linux hostname c-02-11 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.white.preaparc.nxyz.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nx.mask.mgz Binarizing based on threshold min 0.01 max +infinity binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.mgz fstart = 0, fend = 0, nframes = 1 Found 297 values in range Counting number of voxels in first frame Found 297 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nx.mask.mgz Count: 297 297.000000 155887 0.190523 mri_binarize done mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nz.mask.mgz --max -0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri cmdline mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nz.mask.mgz --max -0.01 sysname Linux hostname c-02-11 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.white.preaparc.nxyz.mgz frame 2 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nz.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.mgz fstart = 2, fend = 2, nframes = 1 Found 250 values in range Counting number of voxels in first frame Found 250 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nz.mask.mgz Count: 250 250.000000 155887 0.160373 mri_binarize done fscalc /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.lat.mask.mgz Sun Dec 21 19:35:21 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fscalc /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.lat.mask.mgz freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/tmp.BoQLG2/tmp.mgh mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/tmp.BoQLG2/tmp.mgh reading from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nx.mask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/tmp.BoQLG2/tmp.mgh... ---------------------- mris_calc -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/tmp.BoQLG2/tmp.mgh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/tmp.BoQLG2/tmp.mgh and /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.nz.mask.mgz Packing Done packing Packing Done packing Unpacking Saving result to '/scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/tmp.BoQLG2/tmp.mgh' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 13508 ---------------------- mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/tmp.BoQLG2/tmp.mgh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.lat.mask.mgz mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/tmp.BoQLG2/tmp.mgh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.lat.mask.mgz reading from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/tmp.BoQLG2/tmp.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.lat.mask.mgz... mri_cor2label --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.lat.mask.mgz --l /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.med.label --surf-path /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white.preaparc --id 1 --thresh 0.5 Loading mri /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.lat.mask.mgz 8.0.0 ------- Vox2RAS of input volume ----------- -1.00000 0.00000 0.00000 77943.50000; 0.00000 0.00000 1.00000 -0.50000; 0.00000 -1.00000 0.00000 0.50000; 0.00000 0.00000 0.00000 1.00000; Scanning the volume mri_cor2label completed SUCCESSFULLY Loading surf /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white.preaparc Found 199 label voxels Writing label file /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.med.label Centroid: -20.89 6.50 -12.38 mri_mergelabels -i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.cortex-no-ga.label -i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1361518/lh.gyrus-ambiens.med.label -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Done To view results, run fsvglrun freeview -f /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white.preaparc:label=/scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Started at Sun Dec 21 19:35:08 CST 2025 Ended at Sun Dec 21 19:35:21 CST 2025 Label-Cortex-Run-Time-Sec 13 Label-Cortex-Run-Time-Min 0.22 Label-Cortex-Run-Time-Hours 0.00 label-cortex Done #-------------------------------------------- #@# CortexLabel+HipAmyg lh Sun Dec 21 19:35:21 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_label2label --label-cortex ../surf/lh.white.preaparc aseg.presurf.mgz 1 ../label/lh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 6 non-cortical segments detected only using segment with 6393 vertices erasing segment 0 (vno[0] = 13623) erasing segment 1 (vno[0] = 20704) erasing segment 3 (vno[0] = 56515) erasing segment 4 (vno[0] = 78759) erasing segment 5 (vno[0] = 93793) #-------------------------------------------- #@# CortexLabel rh Sun Dec 21 19:35:31 CST 2025 Sun Dec 21 19:35:31 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex --s sub-06DJHEV0_ses-00A --rh --fix-ga -rwxr-x--- 1 root kdamme 14140 May 28 2025 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1362796 mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white.preaparc /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.cortex-no-ga.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 8 non-cortical segments detected only using segment with 8623 vertices erasing segment 0 (vno[0] = 11254) erasing segment 1 (vno[0] = 20597) erasing segment 2 (vno[0] = 22793) erasing segment 3 (vno[0] = 33482) erasing segment 5 (vno[0] = 80816) erasing segment 6 (vno[0] = 85282) erasing segment 7 (vno[0] = 92728) mri_binarize --match 4201 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/gyrus-ambiens.rh.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri cmdline mri_binarize --match 4201 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/gyrus-ambiens.rh.mgz sysname Linux hostname c-02-11 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/entowm.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/gyrus-ambiens.rh.mgz Binarizing based on matching values nMatch 1 0 4201 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 266 values in range Counting number of voxels in first frame Found 266 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/gyrus-ambiens.rh.mgz Count: 266 266.000000 16777216 0.001585 mri_binarize done mri_vol2surf --regheader sub-06DJHEV0_ses-00A --hemi rh --surf white.preaparc --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/gyrus-ambiens.rh.mgz --projdist-max -1 0 .1 --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.mgz INFO: Delta=0.1 > Max=0, may be ok, maybe not srcvol = /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/gyrus-ambiens.rh.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white.preaparc hemi = rh ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 1 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white.preaparc Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 0 0.1 1 -1 -1 0 using old 2 -0.9 -1 0 using old 3 -0.8 -1 0 using old 4 -0.7 -1 0 using old 5 -0.6 -1 0 using old 6 -0.5 -1 0 using old 7 -0.4 -1 0 using old 8 -0.3 -1 0 using old 9 -0.2 -1 0 using old 10 -0.0999999 -1 0 using old Done mapping volume to surface Number of source voxels hit = 103697 Writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.mgz Dim: 154504 1 1 mri_vol2surf done mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white.preaparc /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.white.preaparc.nxyz.mgz mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white.preaparc /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.white.preaparc.nxyz.mgz Reading in /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white.preaparc Converting surface XYZ coordinates from tkr to scanner space. Outputting normals /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.white.preaparc.nxyz.mgz mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nx.mask.mgz --max -0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri cmdline mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nx.mask.mgz --max -0.01 sysname Linux hostname c-02-11 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.white.preaparc.nxyz.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nx.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.mgz fstart = 0, fend = 0, nframes = 1 Found 333 values in range Counting number of voxels in first frame Found 333 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nx.mask.mgz Count: 333 333.000000 154504 0.215528 mri_binarize done mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nz.mask.mgz --max -0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri cmdline mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nz.mask.mgz --max -0.01 sysname Linux hostname c-02-11 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.white.preaparc.nxyz.mgz frame 2 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nz.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.mgz fstart = 2, fend = 2, nframes = 1 Found 282 values in range Counting number of voxels in first frame Found 282 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nz.mask.mgz Count: 282 282.000000 154504 0.182520 mri_binarize done fscalc /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.lat.mask.mgz Sun Dec 21 19:35:43 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fscalc /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.lat.mask.mgz freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/tmp.QG9DLB/tmp.mgh mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/tmp.QG9DLB/tmp.mgh reading from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nx.mask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/tmp.QG9DLB/tmp.mgh... ---------------------- mris_calc -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/tmp.QG9DLB/tmp.mgh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/tmp.QG9DLB/tmp.mgh and /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.nz.mask.mgz Packing Done packing Packing Done packing Unpacking Saving result to '/scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/tmp.QG9DLB/tmp.mgh' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 13484 ---------------------- mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/tmp.QG9DLB/tmp.mgh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.lat.mask.mgz mri_convert /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/tmp.QG9DLB/tmp.mgh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.lat.mask.mgz reading from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/tmp.QG9DLB/tmp.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.lat.mask.mgz... mri_cor2label --i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.lat.mask.mgz --l /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.med.label --surf-path /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white.preaparc --id 1 --thresh 0.5 Loading mri /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.lat.mask.mgz 8.0.0 ------- Vox2RAS of input volume ----------- -1.00000 0.00000 0.00000 77252.00000; 0.00000 0.00000 1.00000 -0.50000; 0.00000 -1.00000 0.00000 0.50000; 0.00000 0.00000 0.00000 1.00000; Scanning the volume mri_cor2label completed SUCCESSFULLY Loading surf /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white.preaparc Found 240 label voxels Writing label file /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.med.label Centroid: 17.86 5.41 -10.18 mri_mergelabels -i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.cortex-no-ga.label -i /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/tmpdir.label-cortex.1362796/rh.gyrus-ambiens.med.label -o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Done To view results, run fsvglrun freeview -f /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white.preaparc:label=/scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Started at Sun Dec 21 19:35:31 CST 2025 Ended at Sun Dec 21 19:35:44 CST 2025 Label-Cortex-Run-Time-Sec 13 Label-Cortex-Run-Time-Min 0.22 Label-Cortex-Run-Time-Hours 0.00 label-cortex Done #-------------------------------------------- #@# CortexLabel+HipAmyg rh Sun Dec 21 19:35:44 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_label2label --label-cortex ../surf/rh.white.preaparc aseg.presurf.mgz 1 ../label/rh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 9 non-cortical segments detected only using segment with 6341 vertices erasing segment 0 (vno[0] = 11254) erasing segment 1 (vno[0] = 20597) erasing segment 2 (vno[0] = 22793) erasing segment 3 (vno[0] = 33482) erasing segment 5 (vno[0] = 56446) erasing segment 6 (vno[0] = 69075) erasing segment 7 (vno[0] = 85282) erasing segment 8 (vno[0] = 92728) #-------------------------------------------- #@# Smooth2 lh Sun Dec 21 19:35:53 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Smooth2 rh Sun Dec 21 19:35:55 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 lh Sun Dec 21 19:35:58 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated Reading ../surf/lh.smoothwm avg radius = 48.9 mm, total surface area = 96194 mm^2 step 000: RMS=0.175 (target=0.015) step 005: RMS=0.117 (target=0.015) step 010: RMS=0.088 (target=0.015) step 015: RMS=0.075 (target=0.015) step 020: RMS=0.062 (target=0.015) step 025: RMS=0.051 (target=0.015) step 030: RMS=0.042 (target=0.015) step 035: RMS=0.035 (target=0.015) step 040: RMS=0.030 (target=0.015) step 045: RMS=0.026 (target=0.015) step 050: RMS=0.023 (target=0.015) step 055: RMS=0.021 (target=0.015) step 060: RMS=0.020 (target=0.015) writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc inflation complete. inflation took 0.3 minutes mris_inflate utimesec 14.925897 mris_inflate stimesec 0.075659 mris_inflate ru_maxrss 240804 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 35751 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 12192 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 156 mris_inflate ru_nivcsw 21 #-------------------------------------------- #@# Inflation2 rh Sun Dec 21 19:36:13 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated Reading ../surf/rh.smoothwm avg radius = 48.1 mm, total surface area = 95702 mm^2 step 000: RMS=0.176 (target=0.015) step 005: RMS=0.118 (target=0.015) step 010: RMS=0.089 (target=0.015) step 015: RMS=0.075 (target=0.015) step 020: RMS=0.062 (target=0.015) step 025: RMS=0.051 (target=0.015) step 030: RMS=0.043 (target=0.015) step 035: RMS=0.035 (target=0.015) step 040: RMS=0.029 (target=0.015) step 045: RMS=0.026 (target=0.015) step 050: RMS=0.023 (target=0.015) step 055: RMS=0.021 (target=0.015) step 060: RMS=0.019 (target=0.015) writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc inflation complete. inflation took 0.3 minutes mris_inflate utimesec 14.871186 mris_inflate stimesec 0.080652 mris_inflate ru_maxrss 238608 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 35694 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 12080 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 155 mris_inflate ru_nivcsw 20 #-------------------------------------------- #@# Curv .H and .K lh Sun Dec 21 19:36:28 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf mris_curvature -w -seed 1234 lh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 3.258*4pi (40.945) --> -2 handles ICI = 185.1, FI = 1911.7, variation=30258.971 writing Gaussian curvature to ./lh.white.preaparc.K... done. writing mean curvature to ./lh.white.preaparc.H... lh.white.preaparc.H mris_curvature done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 202 vertices thresholded to be in k1 ~ [-0.67 0.26], k2 ~ [-0.27 0.08] total integrated curvature = 0.603*4pi (7.583) --> 0 handles ICI = 1.6, FI = 10.4, variation=176.027 167 vertices thresholded to be in [-0.04 0.02] writing Gaussian curvature to ./lh.inflated.K... thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 120 vertices thresholded to be in [-0.21 0.10] done. writing mean curvature to ./lh.inflated.H... curvature mean = -0.016, std = 0.021 lh.inflated.H mris_curvature done. #-------------------------------------------- #@# Curv .H and .K rh Sun Dec 21 19:37:06 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf mris_curvature -w -seed 1234 rh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 7.771*4pi (97.656) --> -7 handles ICI = 187.8, FI = 1929.0, variation=30469.106 writing Gaussian curvature to ./rh.white.preaparc.K... done. writing mean curvature to ./rh.white.preaparc.H... rh.white.preaparc.H mris_curvature done. rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 191 vertices thresholded to be in k1 ~ [-0.33 0.32], k2 ~ [-0.14 0.10] total integrated curvature = 0.626*4pi (7.863) --> 0 handles ICI = 1.6, FI = 10.8, variation=181.972 173 vertices thresholded to be in [-0.03 0.01] writing Gaussian curvature to ./rh.inflated.K... thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 130 vertices thresholded to be in [-0.13 0.12] done. writing mean curvature to ./rh.inflated.H... curvature mean = -0.016, std = 0.022 rh.inflated.H mris_curvature done. #-------------------------------------------- #@# Sphere lh Sun Dec 21 19:37:45 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_sphere -threads 1 -seed 1234 ../surf/lh.inflated ../surf/lh.sphere Setting OMP_NUM_THREADS=1 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.262... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=c-02-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 singular matrix in quadratic form singular matrix in quadratic form -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.27 pass 1: epoch 2 of 3 starting distance error %20.27 unfolding complete - removing small folds... starting distance error %20.22 removing remaining folds... final distance error %20.25 MRISunfold() return, current seed 1234 -01: dt=0.0000, 43 negative triangles VmPeak 570340 166: dt=0.9900, 43 negative triangles 167: dt=0.9900, 21 negative triangles 168: dt=0.9900, 11 negative triangles 169: dt=0.9900, 7 negative triangles 170: dt=0.9900, 13 negative triangles 171: dt=0.9900, 9 negative triangles 172: dt=0.9900, 10 negative triangles 173: dt=0.9900, 11 negative triangles 174: dt=0.9900, 10 negative triangles 175: dt=0.9900, 7 negative triangles 176: dt=0.9900, 8 negative triangles 177: dt=0.9900, 8 negative triangles 178: dt=0.9900, 8 negative triangles 179: dt=0.9900, 5 negative triangles 180: dt=0.9900, 8 negative triangles 181: dt=0.9900, 8 negative triangles 182: dt=0.9900, 5 negative triangles 183: dt=0.9900, 4 negative triangles 184: dt=0.9900, 2 negative triangles 185: dt=0.9900, 6 negative triangles 186: dt=0.9900, 1 negative triangles 187: dt=0.9900, 2 negative triangles 188: dt=0.9900, 3 negative triangles 189: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/lh.sphere spherical transformation took 0.1130 hours FSRUNTIME@ mris_sphere 0.1130 hours 1 threads #VMPC# mris_sphere VmPeak 570340 mris_sphere done #-------------------------------------------- #@# Sphere rh Sun Dec 21 19:44:32 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_sphere -threads 1 -seed 1234 ../surf/rh.inflated ../surf/rh.sphere Setting OMP_NUM_THREADS=1 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.266... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=c-02-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.69 pass 1: epoch 2 of 3 starting distance error %20.64 unfolding complete - removing small folds... starting distance error %20.56 removing remaining folds... final distance error %20.59 MRISunfold() return, current seed 1234 -01: dt=0.0000, 19 negative triangles VmPeak 567556 207: dt=0.9900, 19 negative triangles 208: dt=0.9900, 5 negative triangles 209: dt=0.9900, 3 negative triangles 210: dt=0.9900, 4 negative triangles 211: dt=0.9900, 1 negative triangles 212: dt=0.9900, 2 negative triangles 213: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.1308 hours FSRUNTIME@ mris_sphere 0.1308 hours 1 threads #VMPC# mris_sphere VmPeak 567556 mris_sphere done #-------------------------------------------- #@# Surf Reg lh Sun Dec 21 19:52:23 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_register -curv -threads 1 ../surf/lh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts cmdline mris_register -curv -threads 1 ../surf/lh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 8.0.0 8.0.0 reading surface from ../surf/lh.sphere... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=c-02-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=c-02-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc tol=1.0e+00, sigma=0.5, host=c-02-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = 0.000, std = 5.684 curvature mean = 0.035, std = 0.820 curvature mean = 0.014, std = 0.856 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (2.50, -9.50, -6.00) sse = 261742.8, elapsed since starting=0.2379 min MRISrigidBodyAlignGlobal() done 0.24 min curvature mean = 0.011, std = 0.835 curvature mean = 0.008, std = 0.943 curvature mean = 0.007, std = 0.844 curvature mean = 0.004, std = 0.976 curvature mean = 0.006, std = 0.845 curvature mean = 0.001, std = 0.990 2 Reading smoothwm curvature mean = -0.020, std = 0.297 curvature mean = 0.042, std = 0.246 curvature mean = 0.076, std = 0.313 curvature mean = 0.037, std = 0.303 curvature mean = 0.043, std = 0.499 curvature mean = 0.036, std = 0.330 curvature mean = 0.025, std = 0.642 curvature mean = 0.036, std = 0.342 curvature mean = 0.008, std = 0.761 MRISregister() return, current seed 0 -01: dt=0.0000, 87 negative triangles VmPeak 544008 119: dt=0.9900, 87 negative triangles 120: dt=0.9405, 88 negative triangles 121: dt=0.9405, 78 negative triangles 122: dt=0.9405, 78 negative triangles 123: dt=0.9405, 73 negative triangles 124: dt=0.9405, 73 negative triangles 125: dt=0.9405, 62 negative triangles 126: dt=0.9405, 68 negative triangles 127: dt=0.9405, 65 negative triangles 128: dt=0.9405, 65 negative triangles 129: dt=0.9405, 68 negative triangles 130: dt=0.9405, 70 negative triangles 131: dt=0.9405, 66 negative triangles 132: dt=0.9405, 70 negative triangles 133: dt=0.9405, 64 negative triangles 134: dt=0.9405, 68 negative triangles 135: dt=0.8935, 69 negative triangles 136: dt=0.8935, 67 negative triangles 137: dt=0.8935, 71 negative triangles 138: dt=0.8935, 68 negative triangles 139: dt=0.8935, 70 negative triangles 140: dt=0.8935, 71 negative triangles 141: dt=0.8935, 71 negative triangles 142: dt=0.8935, 70 negative triangles 143: dt=0.8935, 67 negative triangles 144: dt=0.8935, 72 negative triangles 145: dt=0.8488, 69 negative triangles 146: dt=0.8488, 69 negative triangles 147: dt=0.8488, 71 negative triangles 148: dt=0.8488, 72 negative triangles 149: dt=0.8488, 69 negative triangles 150: dt=0.8488, 72 negative triangles 151: dt=0.8488, 74 negative triangles 152: dt=0.8488, 75 negative triangles 153: dt=0.8488, 77 negative triangles 154: dt=0.8488, 77 negative triangles 155: dt=0.8064, 75 negative triangles 156: dt=0.8064, 74 negative triangles 157: dt=0.8064, 75 negative triangles 158: dt=0.8064, 70 negative triangles 159: dt=0.8064, 73 negative triangles 160: dt=0.8064, 76 negative triangles 161: dt=0.8064, 76 negative triangles 162: dt=0.8064, 76 negative triangles 163: dt=0.8064, 76 negative triangles 164: dt=0.8064, 74 negative triangles 165: dt=0.7660, 73 negative triangles 166: dt=0.7660, 74 negative triangles 167: dt=0.7660, 76 negative triangles 168: dt=0.7660, 77 negative triangles 169: dt=0.7660, 78 negative triangles 170: dt=0.7660, 79 negative triangles 171: dt=0.7660, 74 negative triangles 172: dt=0.7660, 78 negative triangles 173: dt=0.7660, 77 negative triangles 174: dt=0.7660, 76 negative triangles 175: dt=0.7277, 78 negative triangles expanding nbhd size to 1 176: dt=0.9900, 76 negative triangles 177: dt=0.9900, 75 negative triangles 178: dt=0.9900, 70 negative triangles 179: dt=0.9900, 64 negative triangles 180: dt=0.9900, 64 negative triangles 181: dt=0.9900, 66 negative triangles 182: dt=0.9900, 64 negative triangles 183: dt=0.9900, 65 negative triangles 184: dt=0.9900, 62 negative triangles 185: dt=0.9405, 66 negative triangles 186: dt=0.9405, 66 negative triangles 187: dt=0.9405, 63 negative triangles 188: dt=0.9405, 62 negative triangles 189: dt=0.9405, 62 negative triangles 190: dt=0.9405, 63 negative triangles 191: dt=0.9405, 62 negative triangles 192: dt=0.9405, 64 negative triangles 193: dt=0.9405, 64 negative triangles 194: dt=0.9405, 67 negative triangles 195: dt=0.8935, 67 negative triangles 196: dt=0.8935, 69 negative triangles 197: dt=0.8935, 68 negative triangles 198: dt=0.8935, 67 negative triangles 199: dt=0.8935, 70 negative triangles 200: dt=0.8935, 66 negative triangles 201: dt=0.8935, 65 negative triangles 202: dt=0.8935, 66 negative triangles 203: dt=0.8935, 62 negative triangles 204: dt=0.8935, 62 negative triangles 205: dt=0.8488, 63 negative triangles 206: dt=0.8488, 61 negative triangles 207: dt=0.8488, 61 negative triangles 208: dt=0.8488, 63 negative triangles 209: dt=0.8488, 62 negative triangles 210: dt=0.8488, 63 negative triangles 211: dt=0.8488, 65 negative triangles 212: dt=0.8488, 63 negative triangles 213: dt=0.8488, 63 negative triangles 214: dt=0.8488, 65 negative triangles 215: dt=0.8488, 61 negative triangles 216: dt=0.8064, 61 negative triangles 217: dt=0.8064, 62 negative triangles 218: dt=0.8064, 61 negative triangles 219: dt=0.8064, 60 negative triangles 220: dt=0.8064, 60 negative triangles 221: dt=0.8064, 60 negative triangles 222: dt=0.8064, 62 negative triangles 223: dt=0.8064, 60 negative triangles 224: dt=0.8064, 61 negative triangles 225: dt=0.8064, 63 negative triangles 226: dt=0.8064, 64 negative triangles 227: dt=0.8064, 61 negative triangles 228: dt=0.8064, 61 negative triangles 229: dt=0.7660, 60 negative triangles 230: dt=0.7660, 60 negative triangles 231: dt=0.7660, 59 negative triangles 232: dt=0.7660, 59 negative triangles 233: dt=0.7660, 59 negative triangles 234: dt=0.7660, 61 negative triangles 235: dt=0.7660, 60 negative triangles 236: dt=0.7660, 59 negative triangles 237: dt=0.7660, 59 negative triangles 238: dt=0.7660, 60 negative triangles 239: dt=0.7660, 60 negative triangles 240: dt=0.7660, 59 negative triangles 241: dt=0.7277, 59 negative triangles 242: dt=0.7277, 60 negative triangles 243: dt=0.7277, 60 negative triangles 244: dt=0.7277, 59 negative triangles 245: dt=0.7277, 58 negative triangles 246: dt=0.7277, 56 negative triangles 247: dt=0.7277, 56 negative triangles 248: dt=0.7277, 58 negative triangles 249: dt=0.7277, 57 negative triangles 250: dt=0.7277, 56 negative triangles 251: dt=0.7277, 57 negative triangles 252: dt=0.7277, 58 negative triangles 253: dt=0.7277, 56 negative triangles 254: dt=0.7277, 56 negative triangles 255: dt=0.7277, 57 negative triangles 256: dt=0.7277, 55 negative triangles 257: dt=0.7277, 55 negative triangles 258: dt=0.7277, 54 negative triangles 259: dt=0.7277, 54 negative triangles 260: dt=0.7277, 54 negative triangles 261: dt=0.7277, 56 negative triangles 262: dt=0.7277, 53 negative triangles 263: dt=0.7277, 54 negative triangles 264: dt=0.7277, 54 negative triangles 265: dt=0.7277, 52 negative triangles 266: dt=0.7277, 52 negative triangles 267: dt=0.7277, 53 negative triangles 268: dt=0.7277, 51 negative triangles 269: dt=0.7277, 51 negative triangles 270: dt=0.7277, 50 negative triangles 271: dt=0.7277, 52 negative triangles 272: dt=0.7277, 50 negative triangles 273: dt=0.7277, 49 negative triangles 274: dt=0.7277, 49 negative triangles 275: dt=0.7277, 49 negative triangles 276: dt=0.7277, 47 negative triangles 277: dt=0.7277, 47 negative triangles 278: dt=0.7277, 47 negative triangles 279: dt=0.7277, 48 negative triangles 280: dt=0.7277, 46 negative triangles 281: dt=0.7277, 44 negative triangles 282: dt=0.7277, 46 negative triangles 283: dt=0.7277, 44 negative triangles 284: dt=0.7277, 44 negative triangles 285: dt=0.7277, 44 negative triangles 286: dt=0.7277, 42 negative triangles 287: dt=0.7277, 42 negative triangles 288: dt=0.7277, 43 negative triangles 289: dt=0.7277, 43 negative triangles 290: dt=0.7277, 43 negative triangles 291: dt=0.7277, 44 negative triangles 292: dt=0.7277, 43 negative triangles 293: dt=0.7277, 41 negative triangles 294: dt=0.7277, 38 negative triangles 295: dt=0.7277, 38 negative triangles 296: dt=0.7277, 38 negative triangles 297: dt=0.7277, 37 negative triangles 298: dt=0.7277, 35 negative triangles 299: dt=0.7277, 34 negative triangles 300: dt=0.7277, 31 negative triangles 301: dt=0.7277, 31 negative triangles 302: dt=0.7277, 31 negative triangles 303: dt=0.7277, 33 negative triangles 304: dt=0.7277, 30 negative triangles 305: dt=0.7277, 31 negative triangles 306: dt=0.7277, 30 negative triangles 307: dt=0.7277, 30 negative triangles 308: dt=0.7277, 29 negative triangles 309: dt=0.7277, 30 negative triangles 310: dt=0.7277, 29 negative triangles 311: dt=0.7277, 28 negative triangles 312: dt=0.7277, 26 negative triangles 313: dt=0.7277, 27 negative triangles 314: dt=0.7277, 28 negative triangles 315: dt=0.7277, 28 negative triangles 316: dt=0.7277, 26 negative triangles 317: dt=0.7277, 25 negative triangles 318: dt=0.7277, 24 negative triangles 319: dt=0.7277, 24 negative triangles 320: dt=0.7277, 24 negative triangles 321: dt=0.7277, 24 negative triangles 322: dt=0.7277, 23 negative triangles 323: dt=0.7277, 22 negative triangles 324: dt=0.7277, 21 negative triangles 325: dt=0.7277, 21 negative triangles 326: dt=0.7277, 23 negative triangles 327: dt=0.7277, 20 negative triangles 328: dt=0.7277, 18 negative triangles 329: dt=0.7277, 16 negative triangles 330: dt=0.7277, 17 negative triangles 331: dt=0.7277, 18 negative triangles 332: dt=0.7277, 17 negative triangles 333: dt=0.7277, 17 negative triangles 334: dt=0.7277, 16 negative triangles 335: dt=0.7277, 16 negative triangles 336: dt=0.7277, 17 negative triangles 337: dt=0.7277, 14 negative triangles 338: dt=0.7277, 13 negative triangles 339: dt=0.7277, 14 negative triangles 340: dt=0.7277, 12 negative triangles 341: dt=0.7277, 12 negative triangles 342: dt=0.7277, 11 negative triangles 343: dt=0.7277, 12 negative triangles 344: dt=0.7277, 10 negative triangles 345: dt=0.7277, 10 negative triangles 346: dt=0.7277, 9 negative triangles 347: dt=0.7277, 8 negative triangles 348: dt=0.7277, 7 negative triangles 349: dt=0.7277, 8 negative triangles 350: dt=0.7277, 6 negative triangles 351: dt=0.7277, 4 negative triangles 352: dt=0.7277, 7 negative triangles 353: dt=0.7277, 4 negative triangles 354: dt=0.7277, 2 negative triangles 355: dt=0.7277, 2 negative triangles 356: dt=0.7277, 2 negative triangles writing registered surface to ../surf/lh.sphere.reg... registration took 0.10 hours #VMPC# mris_register VmPeak 544008 FSRUNTIME@ mris_register 0.1043 hours 1 threads ln -sf lh.sphere.reg lh.fsaverage.sphere.reg #-------------------------------------------- #@# Surf Reg rh Sun Dec 21 19:58:38 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_register -curv -threads 1 ../surf/rh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts cmdline mris_register -curv -threads 1 ../surf/rh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 8.0.0 8.0.0 reading surface from ../surf/rh.sphere... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=c-02-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=c-02-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc tol=1.0e+00, sigma=0.5, host=c-02-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = 0.000, std = 5.695 curvature mean = 0.027, std = 0.814 curvature mean = 0.013, std = 0.857 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (7.00, -7.50, -4.00) sse = 303860.0, elapsed since starting=0.2097 min MRISrigidBodyAlignGlobal() done 0.21 min curvature mean = 0.010, std = 0.816 curvature mean = 0.007, std = 0.943 curvature mean = 0.007, std = 0.824 curvature mean = 0.003, std = 0.977 curvature mean = 0.006, std = 0.825 curvature mean = 0.001, std = 0.991 2 Reading smoothwm curvature mean = -0.019, std = 0.300 curvature mean = 0.039, std = 0.236 curvature mean = 0.070, std = 0.313 curvature mean = 0.034, std = 0.294 curvature mean = 0.043, std = 0.494 curvature mean = 0.034, std = 0.321 curvature mean = 0.024, std = 0.636 curvature mean = 0.033, std = 0.333 curvature mean = 0.007, std = 0.755 MRISregister() return, current seed 0 -01: dt=0.0000, 38 negative triangles VmPeak 541596 125: dt=0.9900, 38 negative triangles expanding nbhd size to 1 126: dt=0.9900, 40 negative triangles 127: dt=0.9900, 27 negative triangles 128: dt=0.9900, 25 negative triangles 129: dt=0.9900, 26 negative triangles 130: dt=0.9900, 27 negative triangles 131: dt=0.9900, 26 negative triangles 132: dt=0.9900, 26 negative triangles 133: dt=0.9900, 23 negative triangles 134: dt=0.9900, 24 negative triangles 135: dt=0.9900, 24 negative triangles 136: dt=0.9900, 23 negative triangles 137: dt=0.9900, 20 negative triangles 138: dt=0.9900, 20 negative triangles 139: dt=0.9900, 19 negative triangles 140: dt=0.9900, 18 negative triangles 141: dt=0.9900, 19 negative triangles 142: dt=0.9900, 18 negative triangles 143: dt=0.9900, 16 negative triangles 144: dt=0.9900, 16 negative triangles 145: dt=0.9900, 14 negative triangles 146: dt=0.9900, 13 negative triangles 147: dt=0.9900, 13 negative triangles 148: dt=0.9900, 15 negative triangles 149: dt=0.9900, 15 negative triangles 150: dt=0.9900, 15 negative triangles 151: dt=0.9900, 12 negative triangles 152: dt=0.9900, 11 negative triangles 153: dt=0.9900, 10 negative triangles 154: dt=0.9900, 12 negative triangles 155: dt=0.9900, 16 negative triangles 156: dt=0.9900, 13 negative triangles 157: dt=0.9900, 11 negative triangles 158: dt=0.9900, 10 negative triangles 159: dt=0.9900, 9 negative triangles 160: dt=0.9900, 8 negative triangles 161: dt=0.9900, 9 negative triangles 162: dt=0.9900, 13 negative triangles 163: dt=0.9900, 8 negative triangles 164: dt=0.9900, 9 negative triangles 165: dt=0.9900, 10 negative triangles 166: dt=0.9900, 8 negative triangles 167: dt=0.9900, 8 negative triangles 168: dt=0.9900, 8 negative triangles 169: dt=0.9900, 12 negative triangles 170: dt=0.9405, 11 negative triangles 171: dt=0.9405, 7 negative triangles 172: dt=0.9405, 7 negative triangles 173: dt=0.9405, 7 negative triangles 174: dt=0.9405, 8 negative triangles 175: dt=0.9405, 7 negative triangles 176: dt=0.9405, 5 negative triangles 177: dt=0.9405, 5 negative triangles 178: dt=0.9405, 5 negative triangles 179: dt=0.9405, 6 negative triangles 180: dt=0.9405, 5 negative triangles 181: dt=0.9405, 4 negative triangles 182: dt=0.9405, 5 negative triangles 183: dt=0.9405, 3 negative triangles 184: dt=0.9405, 3 negative triangles 185: dt=0.9405, 2 negative triangles 186: dt=0.9405, 2 negative triangles 187: dt=0.9405, 4 negative triangles 188: dt=0.9405, 2 negative triangles 189: dt=0.9405, 4 negative triangles writing registered surface to ../surf/rh.sphere.reg... registration took 0.10 hours #VMPC# mris_register VmPeak 541596 FSRUNTIME@ mris_register 0.0958 hours 1 threads ln -sf rh.sphere.reg rh.fsaverage.sphere.reg #-------------------------------------------- #@# Jacobian white lh Sun Dec 21 20:04:23 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white.preaparc... writing curvature file ../surf/lh.jacobian_white type -1 #-------------------------------------------- #@# Jacobian white rh Sun Dec 21 20:04:24 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white.preaparc... writing curvature file ../surf/rh.jacobian_white type -1 #-------------------------------------------- #@# AvgCurv lh Sun Dec 21 20:04:25 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mrisp_paint -a 5 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/lh.avg_curv... #-------------------------------------------- #@# AvgCurv rh Sun Dec 21 20:04:25 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mrisp_paint -a 5 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc lh Sun Dec 21 20:04:26 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-06DJHEV0_ses-00A lh ../surf/lh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.8 using min determinant for regularization = 0.006 0 singular and 342 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1699 labels changed using aseg relabeling using gibbs priors... 000: 3569 changed, 155887 examined... 001: 843 changed, 14965 examined... 002: 190 changed, 4710 examined... 003: 70 changed, 1178 examined... 004: 35 changed, 414 examined... 005: 22 changed, 228 examined... 006: 9 changed, 141 examined... 007: 10 changed, 52 examined... 008: 6 changed, 58 examined... 009: 0 changed, 31 examined... 360 labels changed using aseg 000: 119 total segments, 75 labels (597 vertices) changed 001: 46 total segments, 7 labels (23 vertices) changed 002: 39 total segments, 1 labels (5 vertices) changed 003: 38 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 4 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1989 vertices marked for relabeling... 1989 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 7 seconds. #----------------------------------------- #@# Cortical Parc rh Sun Dec 21 20:04:33 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-06DJHEV0_ses-00A rh ../surf/rh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1381 labels changed using aseg relabeling using gibbs priors... 000: 3116 changed, 154504 examined... 001: 715 changed, 13417 examined... 002: 151 changed, 4131 examined... 003: 52 changed, 920 examined... 004: 24 changed, 326 examined... 005: 9 changed, 151 examined... 006: 2 changed, 48 examined... 007: 1 changed, 14 examined... 008: 2 changed, 7 examined... 009: 0 changed, 12 examined... 180 labels changed using aseg 000: 95 total segments, 55 labels (478 vertices) changed 001: 42 total segments, 2 labels (2 vertices) changed 002: 40 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 4 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1715 vertices marked for relabeling... 1714 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 7 seconds. #-------------------------------------------- #@# WhiteSurfs lh Sun Dec 21 20:04:40 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof Reading in input surface ../surf/lh.white.preaparc Not smoothing input surface Area 311770 0.34267 0.13483 0.000302 2.0871 Corner 935310 60.00000 16.23854 0.091461 178.9434 Edge 467655 0.90438 0.22357 0.012851 3.2753 Hinge 467655 12.37829 13.70535 0.000003 179.9719 Reading in aparc ../label/lh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1303 MRIclipBrightWM(): nthresh=43871, wmmin=5, clip=110 MRIfindBrightNonWM(): 22 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1303 Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex.label MRISripNotLabel() ripped 9317/155887 vertices (146570 unripped) Reading in ripping surface ../surf/lh.white.preaparc Reading in aparc ../label/lh.aparc.annot for ripsurf [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Ripping BG MRISripBasalGanglia(): 1 -2 2 0.5 Ripping lateralorbitofrontal MRISripBasalGanglia(): 1 -2 2 0.5 ripped 1069 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 77944: xyz = (-39.8264,-7.99327,-6.16193) oxyz = (-39.8264,-7.99327,-6.16193) wxzy = (-39.8264,-7.99327,-6.16193) pxyz = (0,0,0) CBVO Creating mask 155887 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 111.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 111.8219150; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 915048 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=2 had to be increased for 349 vertices, nripped=10386 mean border=77.2, 103 (103) missing vertices, mean dist 0.4 [0.9 (%9.2)->0.6 (%90.8))] %71 local maxima, %23 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1406 min Finding expansion regions mean absolute distance = 0.60 +- 0.75 3929 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-02-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=2648741.2, rms=9.106 001: dt: 0.5000, sse=946035.8, rms=4.976 (45.353%) 002: dt: 0.5000, sse=652935.1, rms=3.840 (22.821%) 003: dt: 0.5000, sse=628853.7, rms=3.735 (2.738%) 004: dt: 0.5000, sse=587950.7, rms=3.537 (5.321%) rms = 3.6854/3.5366, sse=620044.4/587950.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 005: dt: 0.2500, sse=407904.6, rms=2.496 (29.425%) 006: dt: 0.2500, sse=348701.2, rms=2.038 (18.328%) 007: dt: 0.2500, sse=331661.9, rms=1.882 (7.692%) rms = 1.8493/1.8817, sse=328729.4/331661.9, time step reduction 2 of 3 to 0.125 0 0 1 008: dt: 0.2500, sse=328729.4, rms=1.849 (1.721%) 009: dt: 0.1250, sse=320668.6, rms=1.768 (4.383%) rms = 1.7541/1.7682, sse=319307.1/320668.6, time step reduction 3 of 3 to 0.062 0 0 1 010: dt: 0.1250, sse=319307.1, rms=1.754 (0.798%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 111.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 111.8219150; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 1766980 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=1 had to be increased for 185 vertices, nripped=10386 mean border=81.8, 78 (11) missing vertices, mean dist -0.2 [0.4 (%82.0)->0.3 (%18.0))] %84 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0999 min Finding expansion regions mean absolute distance = 0.34 +- 0.46 2871 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-02-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1142702.8, rms=5.551 011: dt: 0.5000, sse=604578.6, rms=3.498 (36.983%) rms = 3.7136/3.4982, sse=647440.4/604578.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 012: dt: 0.2500, sse=435881.8, rms=2.539 (27.411%) 013: dt: 0.2500, sse=354444.1, rms=1.908 (24.864%) 014: dt: 0.2500, sse=326294.9, rms=1.624 (14.860%) 015: dt: 0.2500, sse=317282.4, rms=1.535 (5.488%) rms = 1.4955/1.5353, sse=316256.3/317282.4, time step reduction 2 of 3 to 0.125 0 0 1 016: dt: 0.2500, sse=316256.3, rms=1.496 (2.586%) 017: dt: 0.1250, sse=307583.3, rms=1.401 (6.329%) rms = 1.3913/1.4009, sse=307013.3/307583.3, time step reduction 3 of 3 to 0.062 0 0 1 018: dt: 0.1250, sse=307013.3, rms=1.391 (0.685%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 111.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 111.8219150; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 1910248 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 262 vertices, nripped=10386 mean border=84.2, 121 (4) missing vertices, mean dist -0.1 [0.2 (%72.1)->0.2 (%27.9))] %90 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0539 min Finding expansion regions mean absolute distance = 0.21 +- 0.31 3462 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-02-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=543636.9, rms=3.225 rms = 3.2824/3.2246, sse=577350.9/543636.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=390183.6, rms=2.245 (30.366%) 020: dt: 0.2500, sse=316533.1, rms=1.526 (32.030%) 021: dt: 0.2500, sse=304685.9, rms=1.388 (9.088%) rms = 1.3629/1.3875, sse=304029.2/304685.9, time step reduction 2 of 3 to 0.125 0 0 1 022: dt: 0.2500, sse=304029.2, rms=1.363 (1.776%) 023: dt: 0.1250, sse=294741.6, rms=1.255 (7.898%) rms = 1.2418/1.2552, sse=293904.2/294741.6, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=293904.2, rms=1.242 (1.072%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 111.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 111.8219150; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 2014956 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 288 vertices, nripped=10386 mean border=84.9, 222 (4) missing vertices, mean dist -0.0 [0.2 (%55.4)->0.2 (%44.6))] %91 local maxima, % 2 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0340 min Finding expansion regions mean absolute distance = 0.18 +- 0.26 3181 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-02-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=314160.7, rms=1.527 rms = 1.9666/1.5265, sse=385503.2/314160.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=284375.8, rms=1.101 (27.882%) 026: dt: 0.2500, sse=282341.8, rms=0.980 (10.970%) rms = 1.0034/0.9801, sse=283547.0/282341.8, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step rms = 0.9723/0.9801, sse=281530.8/282341.8, time step reduction 3 of 3 to 0.062 0 0 1 027: dt: 0.1250, sse=281530.8, rms=0.972 (0.804%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.37 minutes Writing output to ../surf/lh.white #VMPC# mris_place_surfaces VmPeak 2092352 mris_place_surface done #-------------------------------------------- #@# WhiteSurfs rh Sun Dec 21 20:07:07 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof Reading in input surface ../surf/rh.white.preaparc Not smoothing input surface Area 309004 0.34479 0.13706 0.000845 1.9561 Corner 927012 60.00000 16.30369 0.248340 179.3425 Edge 463506 0.90751 0.22708 0.016785 3.3794 Hinge 463506 12.42514 14.00318 0.000000 179.9689 Reading in aparc ../label/rh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1303 MRIclipBrightWM(): nthresh=43871, wmmin=5, clip=110 MRIfindBrightNonWM(): 22 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1303 Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex.label MRISripNotLabel() ripped 8933/154504 vertices (145571 unripped) Reading in ripping surface ../surf/rh.white.preaparc Reading in aparc ../label/rh.aparc.annot for ripsurf [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Ripping BG MRISripBasalGanglia(): 1 -2 2 0.5 Ripping lateralorbitofrontal MRISripBasalGanglia(): 1 -2 2 0.5 ripped 995 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 77252: xyz = (4.7877,-6.74323,56.064) oxyz = (4.7877,-6.74323,56.064) wxzy = (4.7877,-6.74323,56.064) pxyz = (0,0,0) CBVO Creating mask 154504 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 112.8219150; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 915124 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=2 had to be increased for 285 vertices, nripped=9928 mean border=77.1, 92 (92) missing vertices, mean dist 0.4 [0.9 (%9.6)->0.6 (%90.4))] %70 local maxima, %23 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1363 min Finding expansion regions mean absolute distance = 0.58 +- 0.74 3314 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-02-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=2580998.8, rms=9.007 001: dt: 0.5000, sse=933383.7, rms=4.945 (45.103%) 002: dt: 0.5000, sse=663477.2, rms=3.890 (21.329%) 003: dt: 0.5000, sse=637686.9, rms=3.783 (2.761%) 004: dt: 0.5000, sse=594063.2, rms=3.568 (5.683%) rms = 3.7094/3.5676, sse=624621.5/594063.2, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 005: dt: 0.2500, sse=407788.0, rms=2.489 (30.244%) 006: dt: 0.2500, sse=350533.8, rms=2.011 (19.178%) 007: dt: 0.2500, sse=329710.7, rms=1.827 (9.185%) rms = 1.7907/1.8266, sse=327003.6/329710.7, time step reduction 2 of 3 to 0.125 0 0 1 008: dt: 0.2500, sse=327003.6, rms=1.791 (1.967%) 009: dt: 0.1250, sse=318378.2, rms=1.695 (5.346%) rms = 1.6801/1.6949, sse=316846.9/318378.2, time step reduction 3 of 3 to 0.062 0 0 1 010: dt: 0.1250, sse=316846.8, rms=1.680 (0.876%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 112.8219150; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 1720216 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=1 had to be increased for 220 vertices, nripped=9928 mean border=81.5, 86 (9) missing vertices, mean dist -0.2 [0.3 (%81.7)->0.3 (%18.3))] %84 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0974 min Finding expansion regions mean absolute distance = 0.33 +- 0.47 2922 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-02-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1092917.1, rms=5.398 011: dt: 0.5000, sse=605202.1, rms=3.456 (35.975%) rms = 3.7296/3.4562, sse=647663.3/605202.1, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 012: dt: 0.2500, sse=421099.3, rms=2.440 (29.400%) 013: dt: 0.2500, sse=343719.0, rms=1.809 (25.859%) 014: dt: 0.2500, sse=316781.2, rms=1.524 (15.739%) 015: dt: 0.2500, sse=309698.7, rms=1.438 (5.684%) rms = 1.4040/1.4377, sse=306666.4/309698.7, time step reduction 2 of 3 to 0.125 0 0 1 016: dt: 0.2500, sse=306666.4, rms=1.404 (2.343%) 017: dt: 0.1250, sse=298763.5, rms=1.303 (7.206%) rms = 1.2941/1.3029, sse=298188.7/298763.5, time step reduction 3 of 3 to 0.062 0 0 1 018: dt: 0.1250, sse=298188.8, rms=1.294 (0.669%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 112.8219150; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 1863324 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 270 vertices, nripped=9928 mean border=83.9, 139 (5) missing vertices, mean dist -0.1 [0.2 (%71.7)->0.2 (%28.3))] %90 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0524 min Finding expansion regions mean absolute distance = 0.21 +- 0.32 2859 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-02-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=527845.5, rms=3.148 rms = 3.2774/3.1479, sse=569876.2/527845.5, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=375691.9, rms=2.143 (31.915%) 020: dt: 0.2500, sse=307178.2, rms=1.427 (33.409%) rms = 1.3013/1.4272, sse=310401.8/307178.2, time step reduction 2 of 3 to 0.125 0 1 0 021: dt: 0.2500, sse=310401.8, rms=1.301 (8.822%) 022: dt: 0.1250, sse=286891.9, rms=1.167 (10.330%) rms = 1.1499/1.1669, sse=284676.5/286891.9, time step reduction 3 of 3 to 0.062 0 0 1 023: dt: 0.1250, sse=284676.5, rms=1.150 (1.455%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.8219150; border_low = 66.0000000; outside_low = 56.3187520; outside_hi = 112.8219150; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 1977156 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 290 vertices, nripped=9928 mean border=84.6, 230 (4) missing vertices, mean dist -0.0 [0.2 (%55.4)->0.2 (%44.6))] %91 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0332 min Finding expansion regions mean absolute distance = 0.18 +- 0.27 3321 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-02-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=306927.3, rms=1.476 rms = 1.9415/1.4756, sse=371610.5/306927.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 024: dt: 0.2500, sse=276243.5, rms=1.024 (30.601%) 025: dt: 0.2500, sse=272774.5, rms=0.881 (14.000%) rms = 0.8988/0.8807, sse=271423.5/272774.5, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 0.8716/0.8807, sse=271319.0/272774.5, time step reduction 3 of 3 to 0.062 0 0 1 026: dt: 0.1250, sse=271319.0, rms=0.872 (1.033%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.27 minutes Writing output to ../surf/rh.white #VMPC# mris_place_surfaces VmPeak 2054956 mris_place_surface done #-------------------------------------------- #@# T1PialSurf lh Sun Dec 21 20:09:29 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white --restore-255 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white --restore-255 Reading in input surface ../surf/lh.white Not smoothing input surface Area 311770 0.34754 0.15011 0.000228 2.5402 Corner 935310 60.00000 17.77063 0.101082 179.7001 Edge 467655 0.91303 0.24435 0.009512 3.2905 Hinge 467655 12.69980 14.46901 0.000016 179.9287 Reading white surface coordinates from ../surf/lh.white Reading repulsion surface coordinates from ../surf/lh.white Reading in aparc ../label/lh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=43871, wmmin=5, clip=110 MRIfindBrightNonWM(): 22 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 64.5672 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex+hipamyg.label MRISripNotLabel() ripped 6965/155887 vertices (148922 unripped) INFO: rip surface needed but not specified, so using input surface Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=0 nspr=0.3 curv=1 vertex 77944: xyz = (-39.83,-7.95518,-6.16687) oxyz = (-39.83,-7.95518,-6.16687) wxzy = (-39.83,-7.95518,-6.16687) pxyz = (-39.83,-7.95518,-6.16687) CBVO Creating mask 155887 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 92.1780850; border_hi = 56.3187520; border_low = 36.9562610; outside_low = 10.0000000; outside_hi = 51.4781270; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 840184 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=2 had to be increased for 427 vertices, nripped=6965 mean border=54.3, 201 (201) missing vertices, mean dist 1.8 [1.2 (%0.0)->3.0 (%100.0))] %12 local maxima, %44 large gradients and %39 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1264 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-02-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=28907094.0, rms=31.047 001: dt: 0.5000, sse=18748466.0, rms=24.948 (19.645%) 002: dt: 0.5000, sse=12416532.0, rms=20.236 (18.889%) 003: dt: 0.5000, sse=9028272.0, rms=17.189 (15.054%) 004: dt: 0.5000, sse=7224619.0, rms=15.321 (10.871%) 005: dt: 0.5000, sse=6104061.0, rms=14.033 (8.402%) 006: dt: 0.5000, sse=5191159.0, rms=12.889 (8.156%) 007: dt: 0.5000, sse=4343398.0, rms=11.726 (9.022%) 008: dt: 0.5000, sse=3609630.5, rms=10.617 (9.460%) 009: dt: 0.5000, sse=2977533.8, rms=9.558 (9.971%) 010: dt: 0.5000, sse=2424035.5, rms=8.523 (10.833%) 011: dt: 0.5000, sse=1955514.1, rms=7.536 (11.585%) 012: dt: 0.5000, sse=1590998.5, rms=6.666 (11.540%) 013: dt: 0.5000, sse=1342378.6, rms=6.000 (9.994%) 014: dt: 0.5000, sse=1186903.4, rms=5.541 (7.648%) 015: dt: 0.5000, sse=1094985.9, rms=5.249 (5.268%) 016: dt: 0.5000, sse=1033908.0, rms=5.044 (3.897%) 017: dt: 0.5000, sse=994776.4, rms=4.907 (2.723%) 018: dt: 0.5000, sse=973164.1, rms=4.829 (1.600%) 019: dt: 0.5000, sse=956851.9, rms=4.767 (1.274%) rms = 4.7340/4.7670, sse=948468.7/956851.9, time step reduction 1 of 3 to 0.250 0 0 1 020: dt: 0.5000, sse=948468.8, rms=4.734 (0.692%) 021: dt: 0.2500, sse=754855.6, rms=3.961 (16.333%) 022: dt: 0.2500, sse=702702.6, rms=3.730 (5.823%) rms = 3.7289/3.7302, sse=703108.5/702702.6, time step reduction 2 of 3 to 0.125 0 1 1 023: dt: 0.2500, sse=703108.6, rms=3.729 (0.033%) 024: dt: 0.1250, sse=666436.6, rms=3.555 (4.662%) rms = 3.5187/3.5551, sse=659014.8/666436.6, time step reduction 3 of 3 to 0.062 0 0 1 025: dt: 0.1250, sse=659014.8, rms=3.519 (1.024%) maximum number of reductions reached, breaking from loop positioning took 1.6 minutes done positioning surface Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 92.1780850; border_hi = 56.3187520; border_low = 36.9562610; outside_low = 10.0000000; outside_hi = 51.4781270; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 1306572 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=1 had to be increased for 12709 vertices, nripped=6965 mean border=53.0, 1936 (47) missing vertices, mean dist 0.1 [0.1 (%49.0)->0.5 (%51.0))] %26 local maxima, %33 large gradients and %35 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0313 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-02-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=857304.6, rms=4.101 rms = 4.5154/4.1014, sse=962672.9/857304.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 026: dt: 0.2500, sse=775924.7, rms=3.750 (8.572%) 027: dt: 0.2500, sse=749622.1, rms=3.629 (3.211%) rms = 3.6250/3.6294, sse=748050.4/749622.1, time step reduction 2 of 3 to 0.125 0 0 1 028: dt: 0.2500, sse=748050.4, rms=3.625 (0.122%) 029: dt: 0.1250, sse=712901.0, rms=3.454 (4.719%) rms = 3.4044/3.4539, sse=702782.5/712901.0, time step reduction 3 of 3 to 0.062 0 0 1 030: dt: 0.1250, sse=702782.5, rms=3.404 (1.434%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 92.1780850; border_hi = 56.3187520; border_low = 36.9562610; outside_low = 10.0000000; outside_hi = 51.4781270; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 1332276 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 13166 vertices, nripped=6965 mean border=52.2, 2222 (40) missing vertices, mean dist 0.1 [0.1 (%45.4)->0.3 (%54.6))] %41 local maxima, %18 large gradients and %35 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0182 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-02-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=769917.4, rms=3.709 rms = 4.3768/3.7092, sse=928078.8/769917.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 031: dt: 0.2500, sse=724277.6, rms=3.495 (5.773%) rms = 3.4788/3.4951, sse=720028.1/724277.5, time step reduction 2 of 3 to 0.125 0 0 1 032: dt: 0.2500, sse=720028.1, rms=3.479 (0.467%) 033: dt: 0.1250, sse=701201.0, rms=3.385 (2.705%) rms = 3.3465/3.3847, sse=693329.7/701201.0, time step reduction 3 of 3 to 0.062 0 0 1 034: dt: 0.1250, sse=693329.7, rms=3.346 (1.129%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 92.1780850; border_hi = 56.3187520; border_low = 36.9562610; outside_low = 10.0000000; outside_hi = 51.4781270; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=155887 Gdiag_no=-1 VMPeak = 1353948 vno start=0, stop=155887 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 10990 vertices, nripped=6965 mean border=51.6, 5036 (35) missing vertices, mean dist 0.0 [0.1 (%48.2)->0.3 (%51.8))] %43 local maxima, %15 large gradients and %34 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0117 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-02-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=722913.9, rms=3.490 rms = 4.0255/3.4903, sse=838499.4/722913.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 035: dt: 0.2500, sse=702833.0, rms=3.393 (2.799%) rms = 3.3664/3.3926, sse=695918.3/702833.0, time step reduction 2 of 3 to 0.125 0 0 1 036: dt: 0.2500, sse=695918.3, rms=3.366 (0.773%) 037: dt: 0.1250, sse=678380.5, rms=3.277 (2.667%) rms = 3.2338/3.2766, sse=669631.5/678380.5, time step reduction 3 of 3 to 0.062 0 0 1 038: dt: 0.1250, sse=669631.5, rms=3.234 (1.307%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Pinning medial wall to white surface Removing intersections removing intersecting faces 000: 18 intersecting 001: 6 intersecting terminating search with 0 intersecting #ET# mris_place_surface 2.83 minutes Writing output to ../surf/lh.pial.T1 #VMPC# mris_place_surfaces VmPeak 1375400 mris_place_surface done #-------------------------------------------- #@# T1PialSurf rh Sun Dec 21 20:12:24 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white --restore-255 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white --restore-255 Reading in input surface ../surf/rh.white Not smoothing input surface Area 309004 0.34998 0.15376 0.000085 2.0714 Corner 927012 60.00000 17.96091 0.177930 178.9871 Edge 463506 0.91667 0.25023 0.013356 4.1095 Hinge 463506 12.72208 14.71308 0.000031 179.9568 Reading white surface coordinates from ../surf/rh.white Reading repulsion surface coordinates from ../surf/rh.white Reading in aparc ../label/rh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=43871, wmmin=5, clip=110 MRIfindBrightNonWM(): 22 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 65.0672 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex+hipamyg.label MRISripNotLabel() ripped 6944/154504 vertices (147560 unripped) INFO: rip surface needed but not specified, so using input surface Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=0 nspr=0.3 curv=1 vertex 77252: xyz = (4.5538,-6.68663,56.144) oxyz = (4.5538,-6.68663,56.144) wxzy = (4.5538,-6.68663,56.144) pxyz = (4.5538,-6.68663,56.144) CBVO Creating mask 154504 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.1780850; border_hi = 56.3187520; border_low = 36.9562610; outside_low = 10.0000000; outside_hi = 51.4781270; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 851060 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=2 had to be increased for 399 vertices, nripped=6944 mean border=54.3, 201 (201) missing vertices, mean dist 1.7 [0.2 (%0.0)->2.9 (%100.0))] %12 local maxima, %43 large gradients and %41 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1239 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-02-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=28029198.0, rms=30.709 001: dt: 0.5000, sse=17989182.0, rms=24.543 (20.078%) 002: dt: 0.5000, sse=11774817.0, rms=19.785 (19.386%) 003: dt: 0.5000, sse=8488155.0, rms=16.729 (15.450%) 004: dt: 0.5000, sse=6751805.5, rms=14.860 (11.170%) 005: dt: 0.5000, sse=5675071.0, rms=13.571 (8.675%) 006: dt: 0.5000, sse=4780705.0, rms=12.398 (8.645%) 007: dt: 0.5000, sse=3945567.2, rms=11.191 (9.731%) 008: dt: 0.5000, sse=3232937.8, rms=10.047 (10.221%) 009: dt: 0.5000, sse=2650965.8, rms=9.005 (10.371%) 010: dt: 0.5000, sse=2174348.2, rms=8.051 (10.600%) 011: dt: 0.5000, sse=1792019.9, rms=7.193 (10.651%) 012: dt: 0.5000, sse=1501078.9, rms=6.464 (10.144%) 013: dt: 0.5000, sse=1299110.2, rms=5.903 (8.673%) 014: dt: 0.5000, sse=1162259.0, rms=5.490 (7.004%) 015: dt: 0.5000, sse=1082840.0, rms=5.233 (4.681%) 016: dt: 0.5000, sse=1031843.4, rms=5.059 (3.318%) 017: dt: 0.5000, sse=1000553.4, rms=4.948 (2.188%) 018: dt: 0.5000, sse=981278.9, rms=4.877 (1.433%) 019: dt: 0.5000, sse=965728.7, rms=4.819 (1.201%) rms = 4.7867/4.8188, sse=957605.2/965728.7, time step reduction 1 of 3 to 0.250 0 0 1 020: dt: 0.5000, sse=957605.2, rms=4.787 (0.666%) 021: dt: 0.2500, sse=777947.1, rms=4.076 (14.853%) 022: dt: 0.2500, sse=729346.8, rms=3.865 (5.163%) rms = 3.8536/3.8653, sse=727259.9/729346.8, time step reduction 2 of 3 to 0.125 0 0 1 023: dt: 0.2500, sse=727259.9, rms=3.854 (0.304%) 024: dt: 0.1250, sse=694298.1, rms=3.701 (3.961%) rms = 3.6701/3.7009, sse=687821.9/694298.1, time step reduction 3 of 3 to 0.062 0 0 1 025: dt: 0.1250, sse=687821.9, rms=3.670 (0.834%) maximum number of reductions reached, breaking from loop positioning took 1.6 minutes done positioning surface Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.1780850; border_hi = 56.3187520; border_low = 36.9562610; outside_low = 10.0000000; outside_hi = 51.4781270; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 1296188 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=1 had to be increased for 13157 vertices, nripped=6944 mean border=53.0, 2188 (57) missing vertices, mean dist 0.1 [0.1 (%48.0)->0.5 (%52.0))] %25 local maxima, %33 large gradients and %36 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0310 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-02-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=891497.1, rms=4.260 rms = 4.5614/4.2600, sse=969085.1/891497.1, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 026: dt: 0.2500, sse=803192.4, rms=3.889 (8.700%) 027: dt: 0.2500, sse=771921.9, rms=3.750 (3.586%) rms = 3.7151/3.7499, sse=763615.1/771921.9, time step reduction 2 of 3 to 0.125 0 0 1 028: dt: 0.2500, sse=763615.1, rms=3.715 (0.928%) 029: dt: 0.1250, sse=728526.2, rms=3.547 (4.522%) rms = 3.5030/3.5471, sse=719345.7/728526.2, time step reduction 3 of 3 to 0.062 0 0 1 030: dt: 0.1250, sse=719345.7, rms=3.503 (1.244%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.1780850; border_hi = 56.3187520; border_low = 36.9562610; outside_low = 10.0000000; outside_hi = 51.4781270; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 1321992 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 13613 vertices, nripped=6944 mean border=52.2, 2321 (40) missing vertices, mean dist 0.1 [0.1 (%44.1)->0.3 (%55.9))] %40 local maxima, %17 large gradients and %36 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0180 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-02-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=781122.2, rms=3.778 rms = 4.4327/3.7776, sse=937193.2/781122.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 031: dt: 0.2500, sse=737596.0, rms=3.575 (5.349%) rms = 3.5633/3.5755, sse=734076.0/737596.0, time step reduction 2 of 3 to 0.125 0 0 1 032: dt: 0.2500, sse=734076.0, rms=3.563 (0.342%) 033: dt: 0.1250, sse=715479.7, rms=3.472 (2.573%) rms = 3.4417/3.4716, sse=709178.8/715479.7, time step reduction 3 of 3 to 0.062 0 0 1 034: dt: 0.1250, sse=709178.8, rms=3.442 (0.861%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.1780850; border_hi = 56.3187520; border_low = 36.9562610; outside_low = 10.0000000; outside_hi = 51.4781270; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=154504 Gdiag_no=-1 VMPeak = 1343336 vno start=0, stop=154504 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 11412 vertices, nripped=6944 mean border=51.7, 5215 (35) missing vertices, mean dist 0.0 [0.1 (%47.5)->0.3 (%52.5))] %42 local maxima, %15 large gradients and %35 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0116 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-02-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=733394.3, rms=3.557 rms = 4.0478/3.5574, sse=838884.3/733394.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 035: dt: 0.2500, sse=713342.9, rms=3.461 (2.704%) rms = 3.4340/3.4612, sse=705995.2/713342.9, time step reduction 2 of 3 to 0.125 0 0 1 036: dt: 0.2500, sse=705995.1, rms=3.434 (0.786%) 037: dt: 0.1250, sse=688434.4, rms=3.345 (2.593%) rms = 3.2991/3.3450, sse=678979.4/688434.4, time step reduction 3 of 3 to 0.062 0 0 1 038: dt: 0.1250, sse=678979.4, rms=3.299 (1.371%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Pinning medial wall to white surface Removing intersections removing intersecting faces 000: 30 intersecting 001: 4 intersecting terminating search with 0 intersecting #ET# mris_place_surface 2.82 minutes Writing output to ../surf/rh.pial.T1 #VMPC# mris_place_surfaces VmPeak 1364420 mris_place_surface done #@# white curv lh Sun Dec 21 20:15:18 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv insurf ../surf/lh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv type -1 #@# white area lh Sun Dec 21 20:15:20 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area writing curvature file ../surf/lh.area type -1 #@# pial curv lh Sun Dec 21 20:15:20 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial insurf ../surf/lh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv.pial type -1 #@# pial area lh Sun Dec 21 20:15:22 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial writing curvature file ../surf/lh.area.pial type -1 #@# thickness lh Sun Dec 21 20:15:22 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness 0 of 155887 vertices processed 25000 of 155887 vertices processed 50000 of 155887 vertices processed 75000 of 155887 vertices processed 100000 of 155887 vertices processed 125000 of 155887 vertices processed 150000 of 155887 vertices processed 0 of 155887 vertices processed 25000 of 155887 vertices processed 50000 of 155887 vertices processed 75000 of 155887 vertices processed 100000 of 155887 vertices processed 125000 of 155887 vertices processed 150000 of 155887 vertices processed thickness calculation complete, 188:945 truncations. 57240 vertices at 0 distance 124935 vertices at 1 distance 85031 vertices at 2 distance 29676 vertices at 3 distance 9258 vertices at 4 distance 3277 vertices at 5 distance 1208 vertices at 6 distance 471 vertices at 7 distance 218 vertices at 8 distance 105 vertices at 9 distance 69 vertices at 10 distance 52 vertices at 11 distance 41 vertices at 12 distance 37 vertices at 13 distance 30 vertices at 14 distance 23 vertices at 15 distance 25 vertices at 16 distance 22 vertices at 17 distance 17 vertices at 18 distance 13 vertices at 19 distance 26 vertices at 20 distance writing curvature file ../surf/lh.thickness type -1 #@# area and vertex vol lh Sun Dec 21 20:15:43 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12720 mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12720 mris_convert --volume sub-06DJHEV0_ses-00A lh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.volume mris_convert --volume sub-06DJHEV0_ses-00A lh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.volume masking with /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Total face volume 311238 Total vertex volume 311003 (mask=0) #@# sub-06DJHEV0_ses-00A lh 311003 vertexvol Done #@# white curv rh Sun Dec 21 20:15:44 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv insurf ../surf/rh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv type -1 #@# white area rh Sun Dec 21 20:15:45 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area writing curvature file ../surf/rh.area type -1 #@# pial curv rh Sun Dec 21 20:15:46 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial insurf ../surf/rh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv.pial type -1 #@# pial area rh Sun Dec 21 20:15:47 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial writing curvature file ../surf/rh.area.pial type -1 #@# thickness rh Sun Dec 21 20:15:48 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness 0 of 154504 vertices processed 25000 of 154504 vertices processed 50000 of 154504 vertices processed 75000 of 154504 vertices processed 100000 of 154504 vertices processed 125000 of 154504 vertices processed 150000 of 154504 vertices processed 0 of 154504 vertices processed 25000 of 154504 vertices processed 50000 of 154504 vertices processed 75000 of 154504 vertices processed 100000 of 154504 vertices processed 125000 of 154504 vertices processed 150000 of 154504 vertices processed thickness calculation complete, 253:959 truncations. 55765 vertices at 0 distance 124149 vertices at 1 distance 85209 vertices at 2 distance 28972 vertices at 3 distance 9234 vertices at 4 distance 3287 vertices at 5 distance 1235 vertices at 6 distance 484 vertices at 7 distance 204 vertices at 8 distance 101 vertices at 9 distance 92 vertices at 10 distance 41 vertices at 11 distance 37 vertices at 12 distance 25 vertices at 13 distance 29 vertices at 14 distance 22 vertices at 15 distance 25 vertices at 16 distance 26 vertices at 17 distance 19 vertices at 18 distance 18 vertices at 19 distance 34 vertices at 20 distance writing curvature file ../surf/rh.thickness type -1 #@# area and vertex vol rh Sun Dec 21 20:16:09 CST 2025 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12696 mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12688 mris_convert --volume sub-06DJHEV0_ses-00A rh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.volume mris_convert --volume sub-06DJHEV0_ses-00A rh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.volume masking with /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Total face volume 307637 Total vertex volume 307474 (mask=0) #@# sub-06DJHEV0_ses-00A rh 307474 vertexvol Done #----------------------------------------- #@# Curvature Stats lh Sun Dec 21 20:16:10 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm sub-06DJHEV0_ses-00A lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-06DJHEV0_ses-00A/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 344 ] Gb_filter = 0 WARN: S lookup min: -1.060826 WARN: S explicit min: 0.000000 vertex = 84 #----------------------------------------- #@# Curvature Stats rh Sun Dec 21 20:16:11 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm sub-06DJHEV0_ses-00A rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-06DJHEV0_ses-00A/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 279 ] Gb_filter = 0 WARN: S lookup min: -0.142066 WARN: S explicit min: 0.000000 vertex = 549 #-------------------------------------------- #@# Cortical ribbon mask Sun Dec 21 20:16:13 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon sub-06DJHEV0_ses-00A SUBJECTS_DIR is /scratch/juno/dal247378/batches/batch_013 loading input data... Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/aseg.presurf.mgz Running hemis serially Processing left hemi computing distance to left white surface computing distance to left pial surface Processing right hemi computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 187 writing volume /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/ribbon.mgz mris_volmask took 4.27 minutes writing ribbon files #----------------------------------------- #@# Cortical Parc 2 lh Sun Dec 21 20:20:29 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-06DJHEV0_ses-00A lh ../surf/lh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 3.0 using min determinant for regularization = 0.088 0 singular and 0 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 76 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 46 labels changed using aseg relabeling using gibbs priors... 000: 10442 changed, 155887 examined... 001: 2500 changed, 40569 examined... 002: 766 changed, 13182 examined... 003: 325 changed, 4391 examined... 004: 160 changed, 1863 examined... 005: 93 changed, 961 examined... 006: 63 changed, 490 examined... 007: 39 changed, 353 examined... 008: 21 changed, 213 examined... 009: 6 changed, 119 examined... 010: 4 changed, 38 examined... 011: 3 changed, 21 examined... 012: 1 changed, 22 examined... 013: 0 changed, 7 examined... 1 labels changed using aseg 000: 280 total segments, 190 labels (2478 vertices) changed 001: 98 total segments, 8 labels (12 vertices) changed 002: 90 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 42 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... relabeling unknown label... 1056 vertices marked for relabeling... 1056 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 9 seconds. #----------------------------------------- #@# Cortical Parc 2 rh Sun Dec 21 20:20:39 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-06DJHEV0_ses-00A rh ../surf/rh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.021 0 singular and 0 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 76 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 17 labels changed using aseg relabeling using gibbs priors... 000: 10535 changed, 154504 examined... 001: 2433 changed, 40752 examined... 002: 704 changed, 12803 examined... 003: 321 changed, 4075 examined... 004: 128 changed, 1852 examined... 005: 67 changed, 759 examined... 006: 36 changed, 370 examined... 007: 18 changed, 202 examined... 008: 12 changed, 108 examined... 009: 5 changed, 68 examined... 010: 3 changed, 31 examined... 011: 2 changed, 14 examined... 012: 1 changed, 12 examined... 013: 1 changed, 8 examined... 014: 1 changed, 7 examined... 015: 1 changed, 7 examined... 016: 0 changed, 8 examined... 5 labels changed using aseg 000: 266 total segments, 180 labels (3565 vertices) changed 001: 101 total segments, 16 labels (35 vertices) changed 002: 85 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 24 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... relabeling unknown label... 1087 vertices marked for relabeling... 1086 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 9 seconds. #----------------------------------------- #@# Cortical Parc 3 lh Sun Dec 21 20:20:48 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-06DJHEV0_ses-00A lh ../surf/lh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 383 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 2061 labels changed using aseg relabeling using gibbs priors... 000: 2252 changed, 155887 examined... 001: 546 changed, 10529 examined... 002: 170 changed, 3114 examined... 003: 69 changed, 1006 examined... 004: 41 changed, 414 examined... 005: 23 changed, 235 examined... 006: 16 changed, 137 examined... 007: 10 changed, 85 examined... 008: 5 changed, 50 examined... 009: 4 changed, 32 examined... 010: 2 changed, 25 examined... 011: 2 changed, 12 examined... 012: 3 changed, 11 examined... 013: 1 changed, 14 examined... 014: 2 changed, 7 examined... 015: 1 changed, 10 examined... 016: 2 changed, 7 examined... 017: 4 changed, 13 examined... 018: 2 changed, 19 examined... 019: 1 changed, 14 examined... 020: 1 changed, 8 examined... 021: 0 changed, 7 examined... 328 labels changed using aseg 000: 49 total segments, 16 labels (435 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 5 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 829 vertices marked for relabeling... 829 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas.annot... classification took 0 minutes and 7 seconds. #----------------------------------------- #@# Cortical Parc 3 rh Sun Dec 21 20:20:55 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-06DJHEV0_ses-00A rh ../surf/rh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.009 0 singular and 325 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 2130 labels changed using aseg relabeling using gibbs priors... 000: 2345 changed, 154504 examined... 001: 576 changed, 10632 examined... 002: 194 changed, 3237 examined... 003: 82 changed, 1117 examined... 004: 35 changed, 469 examined... 005: 19 changed, 210 examined... 006: 16 changed, 109 examined... 007: 11 changed, 94 examined... 008: 10 changed, 68 examined... 009: 7 changed, 59 examined... 010: 10 changed, 39 examined... 011: 8 changed, 46 examined... 012: 8 changed, 45 examined... 013: 5 changed, 39 examined... 014: 2 changed, 32 examined... 015: 3 changed, 13 examined... 016: 3 changed, 13 examined... 017: 3 changed, 18 examined... 018: 1 changed, 19 examined... 019: 0 changed, 7 examined... 376 labels changed using aseg 000: 56 total segments, 23 labels (733 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 6 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 723 vertices marked for relabeling... 723 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas.annot... classification took 0 minutes and 7 seconds. #----------------------------------------- #@# WM/GM Contrast lh Sun Dec 21 20:21:02 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts pctsurfcon --s sub-06DJHEV0_ses-00A --lh-only Log file is /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts/pctsurfcon.log Sun Dec 21 20:21:02 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/pctsurfcon pctsurfcon 8.0.0 Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379589/lh.wm.mgh --regheader sub-06DJHEV0_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 -1 1 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 89532 Masking with /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379589/lh.wm.mgh Dim: 155887 1 1 mri_vol2surf done mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379589/lh.gm.mgh --projfrac 0.3 --regheader sub-06DJHEV0_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Done reading source surface Reading thickness /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface Projecting 0.3 0.3 1 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 108214 Masking with /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379589/lh.gm.mgh Dim: 155887 1 1 mri_vol2surf done mri_concat /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379589/lh.wm.mgh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379589/lh.gm.mgh --paired-diff-norm --mul 100 --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.w-g.pct.mgh mri_segstats --in /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.w-g.pct.mgh --annot sub-06DJHEV0_ses-00A lh aparc --sum /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/lh.w-g.pct.stats --snr 8.0.0 cwd cmdline mri_segstats --in /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.w-g.pct.mgh --annot sub-06DJHEV0_ses-00A lh aparc --sum /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/lh.w-g.pct.stats --snr sysname Linux hostname c-02-11 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.aparc.annot Seg base 1000 MRISannot2seg(): nhits = 146570 Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.w-g.pct.mgh Vertex Area is 0.695074 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up #----------------------------------------- #@# WM/GM Contrast rh Sun Dec 21 20:21:04 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts pctsurfcon --s sub-06DJHEV0_ses-00A --rh-only Log file is /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts/pctsurfcon.log Sun Dec 21 20:21:04 CST 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 cd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/pctsurfcon pctsurfcon 8.0.0 Linux c-02-11 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379657/rh.wm.mgh --regheader sub-06DJHEV0_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 -1 1 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 88939 Masking with /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379657/rh.wm.mgh Dim: 154504 1 1 mri_vol2surf done mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379657/rh.gm.mgh --projfrac 0.3 --regheader sub-06DJHEV0_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Done reading source surface Reading thickness /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface Projecting 0.3 0.3 1 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 107267 Masking with /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379657/rh.gm.mgh Dim: 154504 1 1 mri_vol2surf done mri_concat /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379657/rh.wm.mgh /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/tmp.pctsurfcon.1379657/rh.gm.mgh --paired-diff-norm --mul 100 --o /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.w-g.pct.mgh mri_segstats --in /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.w-g.pct.mgh --annot sub-06DJHEV0_ses-00A rh aparc --sum /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/rh.w-g.pct.stats --snr 8.0.0 cwd cmdline mri_segstats --in /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.w-g.pct.mgh --annot sub-06DJHEV0_ses-00A rh aparc --sum /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/rh.w-g.pct.stats --snr sysname Linux hostname c-02-11 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.aparc.annot Seg base 2000 MRISannot2seg(): nhits = 145571 Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.w-g.pct.mgh Vertex Area is 0.699943 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up #----------------------------------------- #@# Relabel Hypointensities Sun Dec 21 20:21:07 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz reading input surface ../surf/lh.white... relabeling lh hypointensities... 484 voxels changed to hypointensity... reading input surface ../surf/rh.white... relabeling rh hypointensities... 671 voxels changed to hypointensity... 1143 hypointense voxels neighboring cortex changed #----------------------------------------- #@# APas-to-ASeg Sun Dec 21 20:21:17 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_surf2volseg --o aseg.mgz --i aseg.presurf.hypos.mgz --fix-presurf-with-ribbon /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/ribbon.mgz --threads 1 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial --rh-cortex-mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 outvol aseg.mgz 64 avail.processors, using 1 Loading aseg.presurf.hypos.mgz Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri/ribbon.mgz Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 0 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 1003792 mri_surf2volseg done mri_brainvol_stats --subject sub-06DJHEV0_ses-00A ComputeBrainVolumeStats2 VoxelVol=1, KeepCSF=1 #CBVS2 MaskVol 1627715.0 #CBVS2 BrainSegVol 1580820.0 #CBVS2 BrainSegVolNotVent 1252810.0 #CBVS2 SupraTentVol 1428055.0 #CBVS2 SupraTentVolNotVent 1100045.0 #CBVS2 lhWhiteVol 261057.8 #CBVS2 lhPialVol 572156.3 #CBVS2 lhCtxGM 311098.5 #CBVS2 rhWhiteVol 254907.6 #CBVS2 rhPialVol 562439.2 #CBVS2 rhCtxGM 307531.7 #CBVS2 lhCerebralWM 221994.5 #CBVS2 rhCerebralWM 219276.5 #CBVS2 SubCortGMVol 61909.0 #CBVS2 CerebellumVol 152765.0 #CBVS2 CerebellumGMVol 127153.0 #CBVS2 VentChorVol 26558.0 #CBVS2 3rd4th5thCSF 301452.0 #CBVS2 AllCSF 328010.0 #CBVS2 CCVol 4573.0 #----------------------------------------- #@# AParc-to-ASeg aparc Sun Dec 21 20:21:23 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_surf2volseg --o aparc+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.aparc.annot 1000 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.aparc.annot 2000 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 outvol aparc+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 9317 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.aparc.annot Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8933 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 36015 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 984924 mri_surf2volseg done #----------------------------------------- #@# AParc-to-ASeg aparc.a2009s Sun Dec 21 20:23:00 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_surf2volseg --o aparc.a2009s+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.aparc.a2009s.annot 11100 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.aparc.a2009s.annot 12100 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 outvol aparc.a2009s+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 9317 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.aparc.a2009s.annot Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8933 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.aparc.a2009s.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 36015 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 985020 mri_surf2volseg done #----------------------------------------- #@# AParc-to-ASeg aparc.DKTatlas Sun Dec 21 20:24:35 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_surf2volseg --o aparc.DKTatlas+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.aparc.DKTatlas.annot 1000 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.aparc.DKTatlas.annot 2000 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 outvol aparc.DKTatlas+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 9317 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.aparc.DKTatlas.annot Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8933 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.aparc.DKTatlas.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 36015 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 984928 mri_surf2volseg done #----------------------------------------- #@# WMParc Sun Dec 21 20:26:12 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/mri mri_surf2volseg --o wmparc.mgz --label-wm --i aparc+aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.aparc.annot 3000 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.aparc.annot 4000 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 outvol wmparc.mgz 64 avail.processors, using 1 Loading aparc+aseg.mgz Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 9317 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.aparc.annot Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8933 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 5116 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 984924 mri_surf2volseg done mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-06DJHEV0_ses-00A --surf-wm-vol --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/WMParcStatsLUT.txt --etiv --stiv /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/synthseg.tiv.dat setting seed for random number genererator to 1234 8.0.0 cwd cmdline mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-06DJHEV0_ses-00A --surf-wm-vol --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/WMParcStatsLUT.txt --etiv --stiv /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/synthseg.tiv.dat sysname Linux hostname c-02-11 machine x86_64 user dal247378 whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation Reporting on 70 segmentations Using PrintSegStat mri_segstats done #----------------------------------------- #@# Parcellation Stats lh Sun Dec 21 20:29:04 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-06DJHEV0_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 311238 Total vertex volume 311003 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 1306 881 2224 2.472 0.459 0.091 0.017 7 0.9 bankssts 962 774 2383 2.848 0.772 0.157 0.038 21 1.6 caudalanteriorcingulate 3697 2544 7938 2.791 0.449 0.120 0.025 36 3.9 caudalmiddlefrontal 2550 1703 4170 2.216 0.450 0.150 0.046 43 4.0 cuneus 851 560 1762 2.728 0.813 0.115 0.030 6 1.2 entorhinal 5275 3716 12307 2.805 0.547 0.125 0.030 65 5.8 fusiform 8006 5519 16892 2.755 0.535 0.118 0.025 99 8.4 inferiorparietal 5459 3967 13860 2.965 0.602 0.123 0.029 75 6.0 inferiortemporal 1692 1193 3283 2.475 0.726 0.129 0.030 24 2.1 isthmuscingulate 9276 6255 15966 2.283 0.515 0.137 0.037 129 13.0 lateraloccipital 5040 3747 11724 2.841 0.595 0.139 0.041 69 7.8 lateralorbitofrontal 4406 3118 7506 2.235 0.596 0.130 0.035 56 5.4 lingual 3184 2346 6747 2.550 0.600 0.130 0.038 62 4.6 medialorbitofrontal 5700 4172 15759 3.058 0.620 0.131 0.030 98 6.7 middletemporal 1103 692 2406 2.811 0.861 0.101 0.025 9 1.0 parahippocampal 2431 1626 4773 2.689 0.480 0.108 0.025 19 2.3 paracentral 3395 2332 7540 2.775 0.462 0.110 0.026 41 3.1 parsopercularis 1376 1063 3671 2.691 0.539 0.145 0.040 27 1.8 parsorbitalis 2178 1553 4554 2.617 0.464 0.119 0.025 26 2.3 parstriangularis 1929 1581 3120 2.223 0.477 0.142 0.039 19 3.3 pericalcarine 7212 4791 12067 2.230 0.607 0.107 0.023 75 6.2 postcentral 1889 1385 4007 2.576 0.800 0.133 0.029 29 2.2 posteriorcingulate 8203 5440 16285 2.698 0.507 0.105 0.022 65 7.0 precentral 6737 4699 13356 2.562 0.482 0.116 0.026 79 7.0 precuneus 1467 1069 3834 3.051 0.645 0.133 0.038 24 2.1 rostralanteriorcingulate 9554 6973 21550 2.629 0.533 0.130 0.031 144 11.5 rostralmiddlefrontal 12055 8469 28458 2.905 0.551 0.118 0.028 121 12.8 superiorfrontal 10438 7116 19138 2.408 0.459 0.115 0.026 108 10.1 superiorparietal 6877 4671 15429 2.850 0.680 0.114 0.027 77 7.6 superiortemporal 6878 4892 14674 2.703 0.481 0.122 0.027 94 7.1 supramarginal 385 301 1204 2.937 0.577 0.160 0.045 9 0.6 frontalpole 723 617 3460 3.731 0.843 0.155 0.051 17 1.2 temporalpole 734 501 1367 2.530 0.387 0.130 0.030 9 0.8 transversetemporal 3602 2416 7591 3.152 0.871 0.104 0.029 26 3.9 insula mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-06DJHEV0_ses-00A lh pial computing statistics for each annotation in ../label/lh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 311238 Total vertex volume 311003 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 1306 921 2224 2.472 0.459 0.128 0.034 22 1.7 bankssts 962 989 2383 2.848 0.772 0.212 0.057 44 2.2 caudalanteriorcingulate 3697 3053 7938 2.791 0.449 0.149 0.041 77 5.4 caudalmiddlefrontal 2550 2136 4170 2.216 0.450 0.159 0.046 48 4.8 cuneus 851 847 1762 2.728 0.813 0.261 0.100 38 4.1 entorhinal 5275 4941 12307 2.805 0.547 0.169 0.049 144 10.0 fusiform 8006 6705 16892 2.755 0.535 0.155 0.042 171 13.0 inferiorparietal 5459 5306 13860 2.965 0.602 0.170 0.044 99 9.6 inferiortemporal 1692 1546 3283 2.475 0.726 0.207 0.068 77 4.3 isthmuscingulate 9276 7695 15966 2.283 0.515 0.153 0.041 214 15.1 lateraloccipital 5040 4479 11724 2.841 0.595 0.175 0.056 182 9.7 lateralorbitofrontal 4406 3739 7506 2.235 0.596 0.155 0.043 96 7.8 lingual 3184 3066 6747 2.550 0.600 0.184 0.055 88 6.4 medialorbitofrontal 5700 5938 15759 3.058 0.620 0.189 0.047 168 10.7 middletemporal 1103 1008 2406 2.811 0.861 0.198 0.059 27 3.4 parahippocampal 2431 1932 4773 2.689 0.480 0.134 0.037 36 3.3 paracentral 3395 3069 7540 2.775 0.462 0.161 0.046 94 6.2 parsopercularis 1376 1653 3671 2.691 0.539 0.205 0.044 25 2.6 parsorbitalis 2178 1901 4554 2.617 0.464 0.162 0.041 52 3.6 parstriangularis 1929 1269 3120 2.223 0.477 0.116 0.030 26 2.0 pericalcarine 7212 5957 12067 2.230 0.607 0.134 0.031 142 9.1 postcentral 1889 1734 4007 2.576 0.800 0.180 0.054 64 3.9 posteriorcingulate 8203 6354 16285 2.698 0.507 0.131 0.032 182 10.3 precentral 6737 5633 13356 2.562 0.482 0.157 0.048 985 10.9 precuneus 1467 1441 3834 3.051 0.645 0.194 0.064 50 3.8 rostralanteriorcingulate 9554 9059 21550 2.629 0.533 0.175 0.045 211 16.6 rostralmiddlefrontal 12055 10636 28458 2.905 0.551 0.156 0.044 341 19.2 superiorfrontal 10438 8538 19138 2.408 0.459 0.148 0.038 240 15.4 superiorparietal 6877 5860 15429 2.850 0.680 0.157 0.042 150 11.6 superiortemporal 6878 5926 14674 2.703 0.481 0.147 0.038 130 10.0 supramarginal 385 505 1204 2.937 0.577 0.241 0.045 7 0.9 frontalpole 723 1174 3460 3.731 0.843 0.262 0.058 15 1.8 temporalpole 734 605 1367 2.530 0.387 0.156 0.042 28 1.2 transversetemporal 3602 2501 7591 3.152 0.871 0.165 0.052 111 7.4 insula mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats rh Sun Dec 21 20:29:17 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-06DJHEV0_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 307637 Total vertex volume 307474 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 1513 1003 2479 2.608 0.374 0.096 0.019 11 1.1 bankssts 961 733 2181 2.533 0.765 0.136 0.030 15 1.3 caudalanteriorcingulate 3479 2366 7137 2.664 0.461 0.106 0.022 31 3.1 caudalmiddlefrontal 2868 1932 4934 2.271 0.476 0.131 0.032 39 3.5 cuneus 852 568 1968 2.826 0.887 0.119 0.039 8 1.3 entorhinal 4834 3452 11390 2.830 0.579 0.125 0.029 60 5.4 fusiform 9948 6930 20549 2.677 0.469 0.120 0.026 141 10.1 inferiorparietal 5460 3881 14079 3.026 0.633 0.116 0.027 61 5.8 inferiortemporal 1373 912 2626 2.613 0.697 0.123 0.031 15 1.5 isthmuscingulate 8747 5966 15409 2.296 0.551 0.138 0.036 121 12.4 lateraloccipital 4523 3355 10554 2.822 0.633 0.137 0.039 63 6.8 lateralorbitofrontal 4530 3225 7495 2.168 0.604 0.137 0.041 63 6.3 lingual 3480 2595 8177 2.635 0.649 0.132 0.036 57 5.1 medialorbitofrontal 5627 4115 15578 3.010 0.547 0.128 0.029 83 6.7 middletemporal 871 548 1789 2.763 0.786 0.115 0.030 9 1.0 parahippocampal 2391 1566 4640 2.726 0.478 0.111 0.027 20 2.5 paracentral 2465 1748 5659 2.792 0.571 0.115 0.025 27 2.3 parsopercularis 1432 1146 3848 2.680 0.578 0.145 0.038 27 1.9 parsorbitalis 2872 2133 6499 2.597 0.512 0.128 0.028 40 3.2 parstriangularis 2345 1830 3377 2.037 0.473 0.148 0.041 28 3.9 pericalcarine 6823 4551 11345 2.231 0.550 0.110 0.024 69 6.3 postcentral 1678 1200 3536 2.544 0.746 0.126 0.028 27 1.8 posteriorcingulate 7741 5279 15567 2.640 0.507 0.110 0.022 67 7.1 precentral 6345 4474 12628 2.676 0.484 0.120 0.028 71 7.0 precuneus 930 703 2692 2.936 0.773 0.135 0.033 12 1.4 rostralanteriorcingulate 10472 7637 21994 2.534 0.509 0.126 0.029 155 12.3 rostralmiddlefrontal 12136 8738 29010 2.860 0.547 0.129 0.031 149 15.1 superiorfrontal 10569 7238 18758 2.360 0.438 0.120 0.026 130 10.9 superiorparietal 5846 4053 13641 2.923 0.556 0.113 0.025 60 6.0 superiortemporal 6836 4813 13734 2.612 0.477 0.117 0.026 83 7.1 supramarginal 520 455 1739 2.891 0.576 0.189 0.060 16 1.0 frontalpole 887 674 3439 3.542 0.792 0.140 0.047 13 1.1 temporalpole 645 429 1308 2.540 0.329 0.120 0.025 8 0.6 transversetemporal 3571 2424 7715 3.139 0.916 0.109 0.032 33 4.1 insula mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-06DJHEV0_ses-00A rh pial computing statistics for each annotation in ../label/rh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 307637 Total vertex volume 307474 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 1513 916 2479 2.608 0.374 0.130 0.044 33 2.3 bankssts 961 967 2181 2.533 0.765 0.222 0.064 170 2.6 caudalanteriorcingulate 3479 2910 7137 2.664 0.461 0.144 0.040 76 5.5 caudalmiddlefrontal 2868 2556 4934 2.271 0.476 0.159 0.043 67 5.1 cuneus 852 874 1968 2.826 0.887 0.259 0.090 32 4.1 entorhinal 4834 4425 11390 2.830 0.579 0.169 0.049 106 9.2 fusiform 9948 8431 20549 2.677 0.469 0.152 0.039 173 16.1 inferiorparietal 5460 5332 14079 3.026 0.633 0.176 0.048 126 10.5 inferiortemporal 1373 1118 2626 2.613 0.697 0.158 0.046 23 2.5 isthmuscingulate 8747 7502 15409 2.296 0.551 0.157 0.041 195 14.3 lateraloccipital 4523 4189 10554 2.822 0.633 0.183 0.055 119 9.5 lateralorbitofrontal 4530 3889 7495 2.168 0.604 0.158 0.044 84 8.1 lingual 3480 3645 8177 2.635 0.649 0.203 0.061 119 7.9 medialorbitofrontal 5627 6040 15578 3.010 0.547 0.184 0.046 107 11.0 middletemporal 871 763 1789 2.763 0.786 0.185 0.049 19 1.9 parahippocampal 2391 1807 4640 2.726 0.478 0.135 0.037 39 3.3 paracentral 2465 2191 5659 2.792 0.571 0.156 0.043 51 4.1 parsopercularis 1432 1679 3848 2.680 0.578 0.209 0.046 25 2.7 parsorbitalis 2872 2799 6499 2.597 0.512 0.173 0.042 52 4.7 parstriangularis 2345 1611 3377 2.037 0.473 0.128 0.036 47 3.2 pericalcarine 6823 5568 11345 2.231 0.550 0.134 0.031 86 8.7 postcentral 1678 1537 3536 2.544 0.746 0.180 0.056 86 3.5 posteriorcingulate 7741 6222 15567 2.640 0.507 0.132 0.032 128 9.6 precentral 6345 5064 12628 2.676 0.484 0.151 0.043 137 10.5 precuneus 930 1070 2692 2.936 0.773 0.225 0.069 39 2.6 rostralanteriorcingulate 10472 9467 21994 2.534 0.509 0.170 0.043 249 17.9 rostralmiddlefrontal 12136 11168 29010 2.860 0.547 0.167 0.048 293 22.0 superiorfrontal 10569 8635 18758 2.360 0.438 0.145 0.037 185 15.9 superiorparietal 5846 5113 13641 2.923 0.556 0.157 0.039 111 9.6 superiortemporal 6836 5602 13734 2.612 0.477 0.142 0.037 108 9.5 supramarginal 520 767 1739 2.891 0.576 0.265 0.057 10 1.3 frontalpole 887 1198 3439 3.542 0.792 0.214 0.054 16 2.1 temporalpole 645 621 1308 2.540 0.329 0.155 0.040 7 1.1 transversetemporal 3571 2356 7715 3.139 0.916 0.163 0.056 119 8.2 insula mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 2 lh Sun Dec 21 20:29:31 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-06DJHEV0_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 311238 Total vertex volume 311003 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 1449 1076 3371 2.668 0.591 0.131 0.032 22 1.9 G_and_S_frontomargin 1932 1372 4064 2.522 0.578 0.145 0.035 27 2.7 G_and_S_occipital_inf 1815 1203 3760 2.554 0.517 0.113 0.028 19 1.8 G_and_S_paracentral 1878 1307 4153 2.754 0.510 0.117 0.026 20 1.7 G_and_S_subcentral 819 626 2155 2.624 0.509 0.157 0.043 15 1.3 G_and_S_transv_frontopol 2795 2093 6764 2.941 0.559 0.129 0.034 34 3.7 G_and_S_cingul-Ant 1230 923 2657 2.803 0.438 0.124 0.029 15 1.5 G_and_S_cingul-Mid-Ant 1372 976 2809 2.786 0.435 0.115 0.024 15 1.3 G_and_S_cingul-Mid-Post 736 539 2292 3.062 0.704 0.158 0.037 15 1.0 G_cingul-Post-dorsal 331 225 742 2.800 0.587 0.123 0.036 6 0.5 G_cingul-Post-ventral 2261 1417 3902 2.299 0.540 0.141 0.046 39 3.5 G_cuneus 2078 1441 5630 2.942 0.495 0.117 0.033 33 2.2 G_front_inf-Opercular 522 393 1512 2.816 0.469 0.143 0.045 12 0.6 G_front_inf-Orbital 1364 977 3613 2.876 0.422 0.133 0.032 25 1.6 G_front_inf-Triangul 5025 3686 14110 2.866 0.507 0.138 0.033 94 6.1 G_front_middle 8000 5740 22151 3.049 0.561 0.131 0.033 108 9.8 G_front_sup 688 469 1560 3.114 1.077 0.118 0.043 9 1.0 G_Ins_lg_and_S_cent_ins 781 546 2561 3.638 0.837 0.114 0.037 8 1.0 G_insular_short 2489 1706 5500 2.538 0.572 0.139 0.033 52 3.0 G_occipital_middle 1519 1027 2696 2.264 0.588 0.133 0.036 22 1.8 G_occipital_sup 2090 1410 5388 2.926 0.509 0.128 0.034 33 2.4 G_oc-temp_lat-fusifor 2916 2060 5542 2.286 0.683 0.147 0.044 51 4.3 G_oc-temp_med-Lingual 1854 1199 4940 2.911 0.903 0.113 0.032 19 2.3 G_oc-temp_med-Parahip 3275 2575 9713 2.914 0.581 0.153 0.048 59 5.2 G_orbital 2818 1942 7747 2.987 0.552 0.128 0.030 46 3.2 G_pariet_inf-Angular 3166 2305 8238 2.879 0.509 0.135 0.032 61 3.7 G_pariet_inf-Supramar 4003 2841 9534 2.576 0.442 0.122 0.029 57 4.0 G_parietal_sup 2801 1808 5155 2.272 0.609 0.115 0.028 36 2.7 G_postcentral 2736 1798 7192 2.961 0.482 0.112 0.028 29 2.7 G_precentral 3380 2420 8618 2.693 0.514 0.125 0.031 57 3.6 G_precuneus 1057 828 3050 2.708 0.608 0.146 0.047 35 1.8 G_rectus 570 340 948 2.498 0.836 0.099 0.041 6 0.7 G_subcallosal 426 285 935 2.572 0.421 0.118 0.035 6 0.4 G_temp_sup-G_T_transv 2377 1671 7850 3.193 0.699 0.137 0.038 39 3.6 G_temp_sup-Lateral 752 540 2090 3.421 0.859 0.104 0.024 4 0.7 G_temp_sup-Plan_polar 1312 921 2499 2.512 0.355 0.092 0.018 12 1.0 G_temp_sup-Plan_tempo 2777 2112 8786 3.139 0.631 0.142 0.037 58 3.6 G_temporal_inf 2863 2157 10100 3.247 0.616 0.143 0.035 70 3.4 G_temporal_middle 390 256 536 2.338 0.350 0.103 0.019 2 0.3 Lat_Fis-ant-Horizont 276 196 403 2.290 0.401 0.101 0.017 1 0.2 Lat_Fis-ant-Vertical 1258 841 1788 2.588 0.406 0.119 0.023 10 1.2 Lat_Fis-post 2786 1803 4270 2.119 0.454 0.142 0.045 45 4.5 Pole_occipital 1932 1540 7314 3.371 0.705 0.153 0.045 38 3.1 Pole_temporal 2588 2110 4028 2.225 0.478 0.135 0.032 25 3.8 S_calcarine 3297 2183 3954 2.101 0.504 0.090 0.015 13 2.3 S_central 1438 937 2156 2.535 0.371 0.095 0.018 7 1.1 S_cingul-Marginalis 785 516 1230 2.844 0.443 0.101 0.022 4 0.8 S_circular_insula_ant 1600 1037 2602 3.028 0.819 0.081 0.015 5 1.1 S_circular_insula_inf 1882 1238 2785 2.756 0.503 0.100 0.020 9 1.7 S_circular_insula_sup 1473 993 2336 2.713 0.370 0.091 0.014 6 1.0 S_collat_transv_ant 435 311 635 2.224 0.369 0.141 0.039 4 0.7 S_collat_transv_post 2774 1917 4500 2.495 0.446 0.110 0.022 22 2.7 S_front_inf 1606 1157 2853 2.463 0.464 0.123 0.030 15 2.0 S_front_middle 3671 2499 6211 2.608 0.368 0.097 0.019 21 2.9 S_front_sup 471 329 762 2.431 0.351 0.093 0.015 2 0.4 S_interm_prim-Jensen 4487 3025 6310 2.323 0.337 0.105 0.019 27 3.9 S_intrapariet_and_P_trans 1453 990 2188 2.249 0.461 0.129 0.033 12 2.0 S_oc_middle_and_Lunatus 1590 1107 2289 2.165 0.379 0.116 0.027 14 1.8 S_oc_sup_and_transversal 839 550 1254 2.464 0.401 0.092 0.018 4 0.6 S_occipital_ant 1074 747 1685 2.581 0.410 0.117 0.023 8 1.1 S_oc-temp_lat 2123 1486 3294 2.394 0.455 0.103 0.019 13 1.7 S_oc-temp_med_and_Lingual 395 282 563 2.294 0.397 0.119 0.022 2 0.4 S_orbital_lateral 808 584 1186 2.509 0.528 0.119 0.025 5 0.9 S_orbital_med-olfact 1778 1292 3581 2.702 0.664 0.133 0.033 23 2.7 S_orbital-H_Shaped 2386 1643 3614 2.370 0.410 0.119 0.027 20 2.8 S_parieto_occipital 1533 1031 1810 2.061 0.891 0.120 0.027 24 1.6 S_pericallosal 4135 2842 5994 2.324 0.421 0.110 0.022 36 3.8 S_postcentral 2164 1477 3653 2.636 0.364 0.108 0.019 18 1.9 S_precentral-inf-part 1546 1017 2156 2.486 0.382 0.103 0.017 9 1.3 S_precentral-sup-part 813 608 1394 2.459 0.503 0.134 0.029 13 1.3 S_suborbital 1216 828 1789 2.469 0.446 0.117 0.023 8 1.3 S_subparietal 1964 1372 3219 2.721 0.534 0.118 0.023 12 2.2 S_temporal_inf 6910 4670 11647 2.660 0.470 0.106 0.021 62 6.2 S_temporal_sup 437 317 686 2.293 0.354 0.121 0.018 3 0.4 S_temporal_transverse mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 2 rh Sun Dec 21 20:29:38 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-06DJHEV0_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 307637 Total vertex volume 307474 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 1076 878 2431 2.492 0.559 0.152 0.039 21 1.6 G_and_S_frontomargin 1180 853 2876 2.761 0.563 0.139 0.033 16 1.3 G_and_S_occipital_inf 1453 940 3053 2.626 0.521 0.120 0.032 15 1.6 G_and_S_paracentral 1676 1206 3510 2.669 0.503 0.129 0.028 21 1.8 G_and_S_subcentral 1307 1099 3450 2.586 0.489 0.162 0.044 37 2.2 G_and_S_transv_frontopol 3439 2609 8292 2.817 0.571 0.131 0.031 38 4.7 G_and_S_cingul-Ant 1367 975 2868 2.770 0.479 0.119 0.027 12 1.6 G_and_S_cingul-Mid-Ant 1545 1078 3088 2.741 0.423 0.114 0.026 19 1.6 G_and_S_cingul-Mid-Post 549 385 1607 3.037 0.506 0.153 0.036 10 0.7 G_cingul-Post-dorsal 329 219 818 2.873 0.728 0.124 0.044 4 0.4 G_cingul-Post-ventral 2796 1857 4674 2.189 0.516 0.135 0.036 42 3.9 G_cuneus 1477 1093 4585 3.076 0.531 0.125 0.030 24 1.5 G_front_inf-Opercular 606 489 1750 2.807 0.554 0.174 0.046 16 1.1 G_front_inf-Orbital 1319 1004 3724 2.779 0.482 0.145 0.036 27 1.6 G_front_inf-Triangul 4000 2949 11176 2.803 0.497 0.131 0.032 73 4.9 G_front_middle 7924 5743 22050 2.996 0.566 0.139 0.037 124 10.9 G_front_sup 654 458 1580 3.342 1.210 0.122 0.045 9 1.0 G_Ins_lg_and_S_cent_ins 710 524 2289 3.400 1.044 0.137 0.050 12 1.2 G_insular_short 2673 1841 5946 2.561 0.495 0.133 0.034 46 3.5 G_occipital_middle 2115 1414 4009 2.352 0.466 0.130 0.034 32 2.8 G_occipital_sup 1953 1400 5205 2.895 0.507 0.136 0.036 35 2.4 G_oc-temp_lat-fusifor 2888 2049 5117 2.152 0.678 0.152 0.049 53 4.5 G_oc-temp_med-Lingual 1672 1098 4221 2.818 0.920 0.123 0.040 21 2.5 G_oc-temp_med-Parahip 2968 2403 9492 2.986 0.597 0.154 0.046 69 4.5 G_orbital 3858 2804 10149 2.823 0.542 0.138 0.033 77 4.5 G_pariet_inf-Angular 3213 2272 8072 2.834 0.486 0.123 0.029 52 3.2 G_pariet_inf-Supramar 3145 2173 6211 2.445 0.472 0.118 0.026 44 3.1 G_parietal_sup 2424 1617 4698 2.269 0.489 0.120 0.028 32 2.7 G_postcentral 2652 1842 7370 2.891 0.495 0.127 0.030 34 3.1 G_precentral 2757 2005 7322 2.769 0.448 0.134 0.034 52 3.4 G_precuneus 879 692 2603 2.605 0.628 0.155 0.059 25 1.9 G_rectus 487 302 872 2.569 0.902 0.084 0.031 4 0.5 G_subcallosal 481 302 1121 2.640 0.341 0.121 0.028 9 0.5 G_temp_sup-G_T_transv 2008 1428 6138 3.099 0.611 0.132 0.037 35 2.9 G_temp_sup-Lateral 958 700 2245 2.977 0.788 0.116 0.031 7 1.3 G_temp_sup-Plan_polar 1109 746 2182 2.733 0.453 0.087 0.014 6 0.7 G_temp_sup-Plan_tempo 2847 2097 9262 3.256 0.663 0.139 0.035 49 3.7 G_temporal_inf 3267 2438 10560 3.113 0.543 0.131 0.031 58 3.7 G_temporal_middle 511 342 689 2.289 0.421 0.104 0.018 3 0.4 Lat_Fis-ant-Horizont 427 306 753 2.408 0.499 0.110 0.021 4 0.5 Lat_Fis-ant-Vertical 1693 1143 2483 2.654 0.408 0.108 0.020 12 1.5 Lat_Fis-post 4133 2769 6358 2.074 0.510 0.149 0.046 65 6.8 Pole_occipital 2050 1647 8237 3.414 0.689 0.144 0.044 32 3.0 Pole_temporal 2449 1947 3693 2.297 0.639 0.137 0.032 21 3.4 S_calcarine 3002 1970 3557 2.056 0.511 0.089 0.016 12 2.1 S_central 1524 1044 2447 2.526 0.440 0.106 0.020 10 1.4 S_cingul-Marginalis 685 455 1162 2.923 0.505 0.100 0.023 3 0.7 S_circular_insula_ant 1273 822 2063 2.979 0.780 0.083 0.014 4 0.8 S_circular_insula_inf 1574 1030 2500 2.791 0.432 0.092 0.017 6 1.3 S_circular_insula_sup 1544 1023 2403 2.736 0.414 0.082 0.013 5 1.0 S_collat_transv_ant 365 272 531 2.119 0.418 0.138 0.024 3 0.4 S_collat_transv_post 2586 1746 3787 2.326 0.362 0.094 0.016 13 1.8 S_front_inf 3003 2150 5824 2.494 0.521 0.119 0.027 33 3.4 S_front_middle 3711 2532 6441 2.609 0.410 0.102 0.021 23 3.3 S_front_sup 592 420 830 2.350 0.298 0.113 0.018 4 0.5 S_interm_prim-Jensen 5166 3543 8320 2.352 0.378 0.112 0.022 44 4.7 S_intrapariet_and_P_trans 1008 704 1309 2.176 0.328 0.122 0.025 7 1.1 S_oc_middle_and_Lunatus 1945 1335 2770 2.238 0.399 0.129 0.029 19 2.5 S_oc_sup_and_transversal 628 437 1039 2.609 0.481 0.100 0.019 3 0.6 S_occipital_ant 1232 823 1888 2.686 0.458 0.098 0.018 5 1.1 S_oc-temp_lat 1750 1215 2762 2.502 0.484 0.103 0.020 10 1.4 S_oc-temp_med_and_Lingual 626 437 808 2.137 0.393 0.112 0.019 3 0.7 S_orbital_lateral 779 536 1137 2.410 0.611 0.103 0.021 4 0.7 S_orbital_med-olfact 1678 1237 3365 2.721 0.454 0.145 0.038 22 2.9 S_orbital-H_Shaped 2726 1877 4294 2.542 0.422 0.114 0.025 22 2.9 S_parieto_occipital 1302 849 1329 1.909 0.708 0.116 0.022 16 1.1 S_pericallosal 3521 2349 4901 2.277 0.352 0.107 0.020 27 2.8 S_postcentral 2149 1439 3381 2.572 0.405 0.106 0.021 15 2.0 S_precentral-inf-part 1535 1022 2092 2.387 0.433 0.101 0.018 9 1.2 S_precentral-sup-part 456 342 815 2.496 0.792 0.136 0.025 4 0.7 S_suborbital 1343 917 2060 2.478 0.379 0.106 0.020 7 1.2 S_subparietal 1493 1014 2147 2.549 0.400 0.107 0.018 8 1.3 S_temporal_inf 6993 4730 12182 2.731 0.438 0.107 0.021 71 6.9 S_temporal_sup 357 262 498 2.355 0.279 0.125 0.016 2 0.3 S_temporal_transverse mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 3 lh Sun Dec 21 20:29:45 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-06DJHEV0_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 311238 Total vertex volume 311003 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 1493 1120 3155 2.800 0.668 0.136 0.032 24 1.9 caudalanteriorcingulate 3995 2749 8450 2.779 0.450 0.121 0.026 39 4.2 caudalmiddlefrontal 3457 2269 5581 2.255 0.489 0.136 0.040 48 5.0 cuneus 862 563 1910 2.764 0.876 0.115 0.032 7 1.2 entorhinal 4789 3324 10516 2.759 0.523 0.123 0.029 57 5.2 fusiform 8034 5513 16738 2.742 0.536 0.118 0.025 102 8.4 inferiorparietal 5558 4108 14660 2.964 0.613 0.125 0.029 78 6.2 inferiortemporal 1676 1175 3231 2.475 0.717 0.128 0.029 21 2.0 isthmuscingulate 9319 6276 15868 2.268 0.516 0.135 0.037 126 12.8 lateraloccipital 5174 3909 12990 2.857 0.650 0.143 0.043 76 8.4 lateralorbitofrontal 4493 3194 7665 2.228 0.595 0.131 0.035 58 5.5 lingual 2538 1862 5616 2.558 0.626 0.128 0.037 53 3.7 medialorbitofrontal 7269 5229 18579 2.967 0.620 0.127 0.028 113 8.1 middletemporal 1159 736 2588 2.824 0.862 0.100 0.024 9 1.0 parahippocampal 2757 1850 5562 2.714 0.503 0.108 0.024 21 2.7 paracentral 3255 2229 7224 2.787 0.454 0.110 0.026 41 3.1 parsopercularis 1425 1042 3437 2.706 0.490 0.133 0.034 23 1.7 parsorbitalis 2691 1914 5465 2.609 0.469 0.123 0.027 35 3.0 parstriangularis 1913 1572 3081 2.213 0.476 0.143 0.040 20 3.4 pericalcarine 8371 5570 14103 2.281 0.614 0.110 0.024 88 7.7 postcentral 2062 1489 4330 2.611 0.783 0.132 0.030 31 2.5 posteriorcingulate 8111 5379 16209 2.710 0.507 0.106 0.022 65 6.9 precentral 6513 4577 13401 2.586 0.481 0.119 0.027 84 6.9 precuneus 2193 1598 5436 2.962 0.633 0.131 0.037 32 2.9 rostralanteriorcingulate 6894 4984 15012 2.597 0.516 0.126 0.030 102 8.0 rostralmiddlefrontal 13367 9588 32106 2.852 0.565 0.124 0.030 156 15.2 superiorfrontal 8494 5833 15640 2.410 0.426 0.114 0.025 86 8.0 superiorparietal 8481 5875 20406 2.896 0.734 0.116 0.029 97 9.5 superiortemporal 6352 4555 13770 2.707 0.479 0.124 0.027 90 6.8 supramarginal 709 482 1307 2.526 0.389 0.129 0.030 8 0.7 transversetemporal 3166 2120 6968 3.276 0.797 0.097 0.025 20 2.8 insula mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 3 rh Sun Dec 21 20:29:51 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-06DJHEV0_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 307637 Total vertex volume 307474 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 1091 829 2422 2.511 0.776 0.136 0.029 17 1.4 caudalanteriorcingulate 3686 2508 7532 2.668 0.459 0.105 0.022 32 3.3 caudalmiddlefrontal 3574 2412 6000 2.261 0.466 0.132 0.033 52 4.6 cuneus 787 515 1774 2.774 0.887 0.119 0.039 8 1.3 entorhinal 4423 3127 9737 2.786 0.537 0.122 0.029 54 4.7 fusiform 9848 6851 20239 2.669 0.476 0.121 0.026 141 10.1 inferiorparietal 5823 4174 15790 3.054 0.650 0.119 0.028 66 6.3 inferiortemporal 1359 900 2614 2.622 0.687 0.123 0.031 15 1.5 isthmuscingulate 8821 6035 15415 2.292 0.537 0.139 0.036 121 12.5 lateraloccipital 4925 3792 11911 2.746 0.663 0.149 0.043 87 8.3 lateralorbitofrontal 4457 3176 7396 2.171 0.605 0.138 0.042 62 6.3 lingual 2496 1852 6115 2.618 0.740 0.132 0.041 45 3.9 medialorbitofrontal 6795 4916 17742 2.965 0.533 0.124 0.027 93 7.7 middletemporal 939 605 1916 2.775 0.779 0.117 0.029 10 1.1 parahippocampal 2530 1660 4973 2.733 0.477 0.114 0.027 22 2.7 paracentral 2952 2098 6805 2.774 0.558 0.116 0.025 34 2.9 parsopercularis 1234 932 3006 2.695 0.573 0.132 0.032 17 1.4 parsorbitalis 2827 2094 6104 2.549 0.500 0.128 0.028 38 3.1 parstriangularis 2272 1782 3290 2.041 0.471 0.148 0.041 28 3.7 pericalcarine 7633 5077 12823 2.261 0.541 0.110 0.023 77 7.0 postcentral 1737 1235 3568 2.554 0.717 0.125 0.029 27 1.8 posteriorcingulate 7428 5077 15139 2.634 0.517 0.110 0.023 65 6.9 precentral 6476 4582 13148 2.669 0.495 0.120 0.028 76 7.0 precuneus 1267 913 3085 2.843 0.724 0.123 0.029 13 1.7 rostralanteriorcingulate 7448 5393 15803 2.556 0.520 0.126 0.029 107 8.8 rostralmiddlefrontal 15662 11447 37006 2.799 0.547 0.130 0.032 208 19.6 superiorfrontal 8880 6096 15828 2.357 0.446 0.119 0.025 106 8.8 superiorparietal 7906 5530 19011 2.920 0.650 0.116 0.028 85 8.7 superiortemporal 6485 4518 12755 2.622 0.472 0.114 0.024 74 6.2 supramarginal 630 417 1311 2.547 0.329 0.116 0.024 8 0.6 transversetemporal 3180 2128 7217 3.307 0.800 0.101 0.027 26 3.0 insula mris_anatomical_stats done #-------------------------------------------- #@# ASeg Stats Sun Dec 21 20:29:58 CST 2025 /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --stiv /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/synthseg.tiv.dat --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/ASegStatsLUT.txt --subject sub-06DJHEV0_ses-00A setting seed for random number genererator to 1234 8.0.0 cwd cmdline mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --stiv /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/stats/synthseg.tiv.dat --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/ASegStatsLUT.txt --subject sub-06DJHEV0_ses-00A sysname Linux hostname c-02-11 machine x86_64 user dal247378 whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) Computing euler number orig.nofix lheno = -16, rheno = -18 orig.nofix lhholes = 9, rhholes = 10 Loading mri/aseg.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation Reporting on 45 segmentations Using PrintSegStat mri_segstats done /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label #-------------------------------------------- #@# BA_exvivo Labels lh Sun Dec 21 20:31:46 CST 2025 mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA1_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 294 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.label 4423 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA2_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 654 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.label 8563 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA3a_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA3a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 64 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.label 4141 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA3b_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA3b_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 234 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.label 6217 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA4a_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA4a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 169 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.label 5953 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA4p_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA4p_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 94 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.label 4164 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA6_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA6_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 1028 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.label 14617 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA44_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA44_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 900 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.label 5081 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA45_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA45_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 1007 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.label 4429 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.V1_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.V1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 1467 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.label 6108 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.V2_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.V2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 3045 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.label 11159 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.MT_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.MT_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 525 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.label 2543 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.entorhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1290 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1290 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 265 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.label 1555 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.perirhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 224 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.label 1423 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.FG1.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.FG1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.FG1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 414 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 414 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 117 Checking for and removing duplicates Writing label file ./lh.FG1.mpm.vpnl.label 531 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.FG2.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.FG2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.FG2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 703 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 703 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 241 Checking for and removing duplicates Writing label file ./lh.FG2.mpm.vpnl.label 944 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.FG3.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.FG3.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.FG3.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1873 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1873 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 195 Checking for and removing duplicates Writing label file ./lh.FG3.mpm.vpnl.label 2068 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.FG4.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.FG4.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.FG4.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2101 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2101 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 469 Checking for and removing duplicates Writing label file ./lh.FG4.mpm.vpnl.label 2570 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.hOc1.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.hOc1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.hOc1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3877 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3877 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 1140 Checking for and removing duplicates Writing label file ./lh.hOc1.mpm.vpnl.label 5017 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.hOc2.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.hOc2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.hOc2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2919 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2919 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 1178 Checking for and removing duplicates Writing label file ./lh.hOc2.mpm.vpnl.label 4097 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.hOc3v.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.hOc3v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1286 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1286 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 548 Checking for and removing duplicates Writing label file ./lh.hOc3v.mpm.vpnl.label 1834 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.hOc4v.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.hOc4v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1006 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1006 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 395 Checking for and removing duplicates Writing label file ./lh.hOc4v.mpm.vpnl.label 1401 mri_label2label: Done mris_label2annot --s sub-06DJHEV0_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt Number of ctab entries 9 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label cmdline mris_label2annot --s sub-06DJHEV0_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label sysname Linux hostname c-02-11 machine x86_64 user dal247378 subject sub-06DJHEV0_ses-00A hemi lh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.orig set_atable_from_ctable(): 9 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.FG1.mpm.vpnl.label 1 1376057 FG1.mpm.vpnl (57 255 20 255) 1 reading lh.FG2.mpm.vpnl.label 2 16711935 FG2.mpm.vpnl (255 0 255 255) 2 reading lh.FG3.mpm.vpnl.label 3 16711680 FG3.mpm.vpnl (0 0 255 255) 3 reading lh.FG4.mpm.vpnl.label 4 1705837 FG4.mpm.vpnl (109 7 26 255) 4 reading lh.hOc1.mpm.vpnl.label 5 25600 hOc1.mpm.vpnl (0 100 0 255) 5 reading lh.hOc2.mpm.vpnl.label 6 255 hOc2.mpm.vpnl (255 0 0 255) 6 reading lh.hOc3v.mpm.vpnl.label 7 16776960 hOc3v.mpm.vpnl (0 255 255 255) 7 reading lh.hOc4v.mpm.vpnl.label 8 65535 hOc4v.mpm.vpnl (255 255 0 255) ****** Vertices Mapped To Multiple Labels ****** Found 138720 unmapped vertices out of 155887 ********************************************** Mapping unhit to unknown Found 138720 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.mpm.vpnl.annot mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 83 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.thresh.label 1097 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 175 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.thresh.label 2267 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA3a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 14 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.thresh.label 1518 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA3b_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 75 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.thresh.label 2071 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA4a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 43 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.thresh.label 2362 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA4p_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 26 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.thresh.label 1575 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA6_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 458 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.thresh.label 7493 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA44_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 489 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.thresh.label 2401 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.BA45_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 402 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.thresh.label 1553 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.V1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 942 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.thresh.label 4347 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.V2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 1301 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.thresh.label 4635 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.MT_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 135 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.thresh.label 648 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 470 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 470 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 97 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.thresh.label 567 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/lh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./lh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 450 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 450 nlabel points Performing mapping from target back to the source label 155887 Number of reverse mapping hits = 91 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.thresh.label 541 mri_label2label: Done mris_label2annot --s sub-06DJHEV0_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label cmdline mris_label2annot --s sub-06DJHEV0_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname c-02-11 machine x86_64 user dal247378 subject sub-06DJHEV0_ses-00A hemi lh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.BA1_exvivo.label 1 1530880 BA1_exvivo (0 92 23 255) 1 reading lh.BA2_exvivo.label 2 16749699 BA2_exvivo (131 148 255 255) 2 reading lh.BA3a_exvivo.label 3 16711680 BA3a_exvivo (0 0 255 255) 3 reading lh.BA3b_exvivo.label 4 3368703 BA3b_exvivo (255 102 51 255) 4 reading lh.BA4a_exvivo.label 5 1376196 BA4a_exvivo (196 255 20 255) 5 reading lh.BA4p_exvivo.label 6 13382655 BA4p_exvivo (255 51 204 255) 6 reading lh.BA6_exvivo.label 7 10036737 BA6_exvivo (1 38 153 255) 7 reading lh.BA44_exvivo.label 8 2490521 BA44_exvivo (153 0 38 255) 8 reading lh.BA45_exvivo.label 9 39283 BA45_exvivo (115 153 0 255) 9 reading lh.V1_exvivo.label 10 3993 V1_exvivo (153 15 0 255) 10 reading lh.V2_exvivo.label 11 8508928 V2_exvivo (0 214 129 255) 11 reading lh.MT_exvivo.label 12 10027163 MT_exvivo (155 0 153 255) 12 reading lh.perirhinal_exvivo.label 13 16422433 perirhinal_exvivo (33 150 250 255) 13 reading lh.entorhinal_exvivo.label 14 16392598 entorhinal_exvivo (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 109179 unmapped vertices out of 155887 ********************************************** Mapping unhit to unknown Found 109179 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.BA_exvivo.annot mris_label2annot --s sub-06DJHEV0_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label cmdline mris_label2annot --s sub-06DJHEV0_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname c-02-11 machine x86_64 user dal247378 subject sub-06DJHEV0_ses-00A hemi lh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.BA1_exvivo.thresh.label 1 1530880 BA1_exvivo.thresh (0 92 23 255) 1 reading lh.BA2_exvivo.thresh.label 2 16749699 BA2_exvivo.thresh (131 148 255 255) 2 reading lh.BA3a_exvivo.thresh.label 3 16711680 BA3a_exvivo.thresh (0 0 255 255) 3 reading lh.BA3b_exvivo.thresh.label 4 3368703 BA3b_exvivo.thresh (255 102 51 255) 4 reading lh.BA4a_exvivo.thresh.label 5 1376196 BA4a_exvivo.thresh (196 255 20 255) 5 reading lh.BA4p_exvivo.thresh.label 6 13382655 BA4p_exvivo.thresh (255 51 204 255) 6 reading lh.BA6_exvivo.thresh.label 7 10036737 BA6_exvivo.thresh (1 38 153 255) 7 reading lh.BA44_exvivo.thresh.label 8 2490521 BA44_exvivo.thresh (153 0 38 255) 8 reading lh.BA45_exvivo.thresh.label 9 39283 BA45_exvivo.thresh (115 153 0 255) 9 reading lh.V1_exvivo.thresh.label 10 3993 V1_exvivo.thresh (153 15 0 255) 10 reading lh.V2_exvivo.thresh.label 11 8508928 V2_exvivo.thresh (0 214 129 255) 11 reading lh.MT_exvivo.thresh.label 12 10027163 MT_exvivo.thresh (155 0 153 255) 12 reading lh.perirhinal_exvivo.thresh.label 13 16422433 perirhinal_exvivo.thresh (33 150 250 255) 13 reading lh.entorhinal_exvivo.thresh.label 14 16392598 entorhinal_exvivo.thresh (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 128808 unmapped vertices out of 155887 ********************************************** Mapping unhit to unknown Found 128808 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/lh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-06DJHEV0_ses-00A lh white computing statistics for each annotation in ./lh.BA_exvivo.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 311238 Total vertex volume 311003 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 1356 864 2489 2.285 0.575 0.139 0.038 24 1.7 BA1_exvivo 4926 3328 8268 2.434 0.498 0.108 0.022 45 4.4 BA2_exvivo 1101 731 1204 2.117 0.346 0.120 0.024 8 0.9 BA3a_exvivo 2581 1721 4045 2.071 0.668 0.096 0.020 21 2.0 BA3b_exvivo 1627 1066 3632 2.876 0.421 0.102 0.022 11 1.5 BA4a_exvivo 1355 881 2285 2.570 0.423 0.084 0.017 6 0.9 BA4p_exvivo 10040 6943 23832 2.854 0.533 0.118 0.027 105 10.4 BA6_exvivo 3397 2333 7384 2.771 0.451 0.105 0.025 38 3.2 BA44_exvivo 3516 2501 7733 2.643 0.515 0.127 0.029 53 4.0 BA45_exvivo 3734 2702 5877 2.150 0.475 0.132 0.041 47 5.8 V1_exvivo 9020 6236 14631 2.173 0.508 0.146 0.041 138 13.9 V2_exvivo 2328 1621 4492 2.562 0.478 0.119 0.027 24 2.5 MT_exvivo 905 668 2821 3.157 0.777 0.125 0.035 11 1.1 perirhinal_exvivo 822 531 1915 2.876 1.033 0.125 0.039 10 1.7 entorhinal_exvivo mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-06DJHEV0_ses-00A lh white computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 311238 Total vertex volume 311003 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 860 541 1532 2.140 0.438 0.141 0.042 17 1.1 BA1_exvivo.thresh 1891 1278 3330 2.340 0.495 0.100 0.019 15 1.5 BA2_exvivo.thresh 905 608 935 2.126 0.311 0.129 0.024 7 0.9 BA3a_exvivo.thresh 1554 1017 1763 1.684 0.350 0.076 0.013 7 1.0 BA3b_exvivo.thresh 1577 1026 3395 2.856 0.436 0.093 0.020 9 1.3 BA4a_exvivo.thresh 1089 698 1719 2.526 0.436 0.084 0.016 5 0.6 BA4p_exvivo.thresh 5613 3833 13510 2.868 0.547 0.115 0.026 55 5.6 BA6_exvivo.thresh 2203 1560 4995 2.775 0.467 0.112 0.028 30 2.2 BA44_exvivo.thresh 1481 1047 3752 2.865 0.432 0.131 0.033 26 1.5 BA45_exvivo.thresh 3974 2877 6158 2.121 0.482 0.130 0.040 46 5.8 V1_exvivo.thresh 4407 3143 7126 2.116 0.497 0.155 0.047 74 8.0 V2_exvivo.thresh 612 426 1330 2.751 0.485 0.103 0.023 5 0.6 MT_exvivo.thresh 407 304 1554 3.378 0.734 0.135 0.045 7 0.6 perirhinal_exvivo.thresh 506 345 1276 3.164 0.745 0.126 0.035 4 0.8 entorhinal_exvivo.thresh mris_anatomical_stats done #-------------------------------------------- #@# BA_exvivo Labels rh Sun Dec 21 20:33:36 CST 2025 mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA1_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 261 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.label 4223 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA2_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 466 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.label 7153 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA3a_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA3a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 53 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.label 4033 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA3b_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA3b_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 171 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.label 4693 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA4a_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA4a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 79 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.label 5826 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA4p_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA4p_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 36 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.label 4509 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA6_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA6_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 544 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.label 12800 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA44_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA44_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 1086 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.label 7998 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA45_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA45_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 1413 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.label 6768 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.V1_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.V1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 1861 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.label 6588 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.V2_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.V2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 3381 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.label 11397 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.MT_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.MT_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 383 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.label 2315 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.entorhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1038 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1038 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 154 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.label 1192 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.perirhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 116 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.label 868 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.FG1.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.FG1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.FG1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 541 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 541 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 103 Checking for and removing duplicates Writing label file ./rh.FG1.mpm.vpnl.label 644 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.FG2.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.FG2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.FG2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 721 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 721 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 141 Checking for and removing duplicates Writing label file ./rh.FG2.mpm.vpnl.label 862 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.FG3.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.FG3.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.FG3.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1523 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1523 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 226 Checking for and removing duplicates Writing label file ./rh.FG3.mpm.vpnl.label 1749 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.FG4.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.FG4.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.FG4.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1586 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1586 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 450 Checking for and removing duplicates Writing label file ./rh.FG4.mpm.vpnl.label 2036 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.hOc1.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.hOc1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.hOc1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3667 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3667 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 1397 Checking for and removing duplicates Writing label file ./rh.hOc1.mpm.vpnl.label 5064 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.hOc2.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.hOc2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.hOc2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2719 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2719 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 1274 Checking for and removing duplicates Writing label file ./rh.hOc2.mpm.vpnl.label 3993 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.hOc3v.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.hOc3v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1228 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1228 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 502 Checking for and removing duplicates Writing label file ./rh.hOc3v.mpm.vpnl.label 1730 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.hOc4v.mpm.vpnl.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.hOc4v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1025 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1025 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 282 Checking for and removing duplicates Writing label file ./rh.hOc4v.mpm.vpnl.label 1307 mri_label2label: Done mris_label2annot --s sub-06DJHEV0_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt Number of ctab entries 9 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label cmdline mris_label2annot --s sub-06DJHEV0_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label sysname Linux hostname c-02-11 machine x86_64 user dal247378 subject sub-06DJHEV0_ses-00A hemi rh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.orig set_atable_from_ctable(): 9 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.FG1.mpm.vpnl.label 1 1376057 FG1.mpm.vpnl (57 255 20 255) 1 reading rh.FG2.mpm.vpnl.label 2 16711935 FG2.mpm.vpnl (255 0 255 255) 2 reading rh.FG3.mpm.vpnl.label 3 16711680 FG3.mpm.vpnl (0 0 255 255) 3 reading rh.FG4.mpm.vpnl.label 4 1705837 FG4.mpm.vpnl (109 7 26 255) 4 reading rh.hOc1.mpm.vpnl.label 5 25600 hOc1.mpm.vpnl (0 100 0 255) 5 reading rh.hOc2.mpm.vpnl.label 6 255 hOc2.mpm.vpnl (255 0 0 255) 6 reading rh.hOc3v.mpm.vpnl.label 7 16776960 hOc3v.mpm.vpnl (0 255 255 255) 7 reading rh.hOc4v.mpm.vpnl.label 8 65535 hOc4v.mpm.vpnl (255 255 0 255) ****** Vertices Mapped To Multiple Labels ****** Found 138143 unmapped vertices out of 154504 ********************************************** Mapping unhit to unknown Found 138143 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.mpm.vpnl.annot mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 95 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.thresh.label 971 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 136 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.thresh.label 2824 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA3a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 8 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.thresh.label 1706 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA3b_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 75 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.thresh.label 2258 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA4a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 15 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.thresh.label 1403 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA4p_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 10 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.thresh.label 1499 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA6_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 235 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.thresh.label 7194 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA44_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 206 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.thresh.label 1218 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.BA45_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 274 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.thresh.label 1452 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.V1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 1209 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.thresh.label 4441 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.V2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 1518 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.thresh.label 4955 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.MT_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 55 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.thresh.label 323 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 694 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 694 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 96 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.thresh.label 790 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject sub-06DJHEV0_ses-00A --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_013/fsaverage/label/rh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-06DJHEV0_ses-00A trglabel = ./rh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 291 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_013/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 291 nlabel points Performing mapping from target back to the source label 154504 Number of reverse mapping hits = 38 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.thresh.label 329 mri_label2label: Done mris_label2annot --s sub-06DJHEV0_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label cmdline mris_label2annot --s sub-06DJHEV0_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname c-02-11 machine x86_64 user dal247378 subject sub-06DJHEV0_ses-00A hemi rh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.BA1_exvivo.label 1 1530880 BA1_exvivo (0 92 23 255) 1 reading rh.BA2_exvivo.label 2 16749699 BA2_exvivo (131 148 255 255) 2 reading rh.BA3a_exvivo.label 3 16711680 BA3a_exvivo (0 0 255 255) 3 reading rh.BA3b_exvivo.label 4 3368703 BA3b_exvivo (255 102 51 255) 4 reading rh.BA4a_exvivo.label 5 1376196 BA4a_exvivo (196 255 20 255) 5 reading rh.BA4p_exvivo.label 6 13382655 BA4p_exvivo (255 51 204 255) 6 reading rh.BA6_exvivo.label 7 10036737 BA6_exvivo (1 38 153 255) 7 reading rh.BA44_exvivo.label 8 2490521 BA44_exvivo (153 0 38 255) 8 reading rh.BA45_exvivo.label 9 39283 BA45_exvivo (115 153 0 255) 9 reading rh.V1_exvivo.label 10 3993 V1_exvivo (153 15 0 255) 10 reading rh.V2_exvivo.label 11 8508928 V2_exvivo (0 214 129 255) 11 reading rh.MT_exvivo.label 12 10027163 MT_exvivo (155 0 153 255) 12 reading rh.perirhinal_exvivo.label 13 16422433 perirhinal_exvivo (33 150 250 255) 13 reading rh.entorhinal_exvivo.label 14 16392598 entorhinal_exvivo (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 109063 unmapped vertices out of 154504 ********************************************** Mapping unhit to unknown Found 109063 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.BA_exvivo.annot mris_label2annot --s sub-06DJHEV0_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label cmdline mris_label2annot --s sub-06DJHEV0_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname c-02-11 machine x86_64 user dal247378 subject sub-06DJHEV0_ses-00A hemi rh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_013 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.BA1_exvivo.thresh.label 1 1530880 BA1_exvivo.thresh (0 92 23 255) 1 reading rh.BA2_exvivo.thresh.label 2 16749699 BA2_exvivo.thresh (131 148 255 255) 2 reading rh.BA3a_exvivo.thresh.label 3 16711680 BA3a_exvivo.thresh (0 0 255 255) 3 reading rh.BA3b_exvivo.thresh.label 4 3368703 BA3b_exvivo.thresh (255 102 51 255) 4 reading rh.BA4a_exvivo.thresh.label 5 1376196 BA4a_exvivo.thresh (196 255 20 255) 5 reading rh.BA4p_exvivo.thresh.label 6 13382655 BA4p_exvivo.thresh (255 51 204 255) 6 reading rh.BA6_exvivo.thresh.label 7 10036737 BA6_exvivo.thresh (1 38 153 255) 7 reading rh.BA44_exvivo.thresh.label 8 2490521 BA44_exvivo.thresh (153 0 38 255) 8 reading rh.BA45_exvivo.thresh.label 9 39283 BA45_exvivo.thresh (115 153 0 255) 9 reading rh.V1_exvivo.thresh.label 10 3993 V1_exvivo.thresh (153 15 0 255) 10 reading rh.V2_exvivo.thresh.label 11 8508928 V2_exvivo.thresh (0 214 129 255) 11 reading rh.MT_exvivo.thresh.label 12 10027163 MT_exvivo.thresh (155 0 153 255) 12 reading rh.perirhinal_exvivo.thresh.label 13 16422433 perirhinal_exvivo.thresh (33 150 250 255) 13 reading rh.entorhinal_exvivo.thresh.label 14 16392598 entorhinal_exvivo.thresh (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 129779 unmapped vertices out of 154504 ********************************************** Mapping unhit to unknown Found 129779 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/label/rh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-06DJHEV0_ses-00A rh white computing statistics for each annotation in ./rh.BA_exvivo.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 307637 Total vertex volume 307474 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 1078 711 2377 2.473 0.461 0.138 0.036 18 1.5 BA1_exvivo 3967 2654 6143 2.286 0.369 0.103 0.021 30 3.2 BA2_exvivo 1043 714 1096 1.966 0.365 0.120 0.024 7 1.1 BA3a_exvivo 2126 1393 2999 1.872 0.469 0.096 0.021 19 1.8 BA3b_exvivo 1457 954 3261 2.901 0.429 0.109 0.027 11 1.6 BA4a_exvivo 1156 757 1974 2.570 0.391 0.093 0.019 6 0.9 BA4p_exvivo 8239 5721 19394 2.831 0.543 0.120 0.027 87 8.8 BA6_exvivo 4562 3208 9572 2.710 0.512 0.115 0.024 46 4.6 BA44_exvivo 5190 3832 11821 2.583 0.536 0.125 0.028 71 5.5 BA45_exvivo 4371 3178 6807 2.102 0.525 0.147 0.047 62 7.6 V1_exvivo 9033 6276 14301 2.129 0.543 0.141 0.038 127 12.5 V2_exvivo 2109 1432 4062 2.657 0.472 0.116 0.025 23 2.1 MT_exvivo 415 325 1479 3.440 0.619 0.156 0.049 10 0.6 perirhinal_exvivo 695 479 1978 3.135 0.679 0.124 0.034 6 0.9 entorhinal_exvivo mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-06DJHEV0_ses-00A rh white computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot. reading input surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_013/sub-06DJHEV0_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 307637 Total vertex volume 307474 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1699643 mm^3 (det: 1.146185 ) 738 491 1567 2.324 0.426 0.140 0.038 14 1.0 BA1_exvivo.thresh 2127 1399 3365 2.299 0.390 0.104 0.019 17 1.7 BA2_exvivo.thresh 940 626 867 1.948 0.330 0.123 0.024 6 1.0 BA3a_exvivo.thresh 1638 1082 1955 1.722 0.353 0.085 0.016 11 1.1 BA3b_exvivo.thresh 899 581 2127 2.987 0.452 0.124 0.034 10 1.1 BA4a_exvivo.thresh 937 631 1553 2.566 0.411 0.087 0.018 3 0.7 BA4p_exvivo.thresh 5113 3565 11905 2.789 0.547 0.124 0.028 58 5.4 BA6_exvivo.thresh 1106 816 2753 2.836 0.607 0.118 0.023 12 1.1 BA44_exvivo.thresh 1344 1018 3402 2.698 0.536 0.135 0.031 23 1.6 BA45_exvivo.thresh 4165 3043 6348 2.089 0.524 0.148 0.047 59 7.4 V1_exvivo.thresh 4734 3295 7571 2.062 0.562 0.146 0.043 73 7.1 V2_exvivo.thresh 301 206 722 2.606 0.302 0.124 0.027 5 0.3 MT_exvivo.thresh 40 30 171 3.586 0.423 0.201 0.057 2 0.0 perirhinal_exvivo.thresh 643 464 1760 3.213 0.637 0.120 0.030 4 0.8 entorhinal_exvivo.thresh mris_anatomical_stats done Started at Sun Dec 21 18:49:49 CST 2025 Ended at Sun Dec 21 20:35:25 CST 2025 #@#%# recon-all-run-time-hours 1.760 recon-all -s sub-06DJHEV0_ses-00A finished without error at Sun Dec 21 20:35:25 CST 2025 #New# invocation of recon-all Tue Apr 21 13:09:40 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/recon-all -s sub-06DJHEV0_ses-00A -localGI subjid sub-06DJHEV0_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Actual FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 build-stamp.txt: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-03-15 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 8192 kbytes maxproc 1545830 maxlocks unlimited maxsignal 1545830 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 377Gi 36Gi 141Gi 21Gi 223Gi 340Gi Swap: 0B 0B 0B SLURM_JOB_ID 174833 ######################################## program versions used 8.0.0 (freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a) 8.0.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mris_convert -all-info ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_motion_correct.fsl 8.0.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-15 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ####################################### GCADIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### lta_convert --inlta identity.nofile --src /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/rawavg.mgz --trg /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/orig.mgz --outlta /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/rawavg2orig.lta 8.0.0 --inlta: identity.nofile input LTA transform. --src: /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/rawavg.mgz src image (geometry). --trg: /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/orig.mgz trg image (geometry). --outlta: /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/rawavg2orig.lta output LTA. LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/rawavg2orig.lta... lta_convert successful. Tue Apr 21 13:09:41 CDT 2026 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg --i /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/synthstrip.mgz --t /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --affine-only --o /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305 --threads 1 -rwxr-x--- 1 root kdamme 30890 May 28 2025 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-03-15 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 3422517 /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305 /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A To check affine registration tkregisterfv --mov /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/synthstrip.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --reg /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/transforms/synthmorph.mni305/aff.lta AffineOnly specified, so exiting now Started at Tue Apr 21 13:09:41 CDT 2026 Ended at Tue Apr 21 13:09:41 CDT 2026 Fs-Synthmorph-Reg-Run-Time-Sec 0 Fs-Synthmorph-Reg-Run-Time-Min 0.00 Fs-Synthmorph-Reg-Run-Time-Hours 0.00 fs-synthmorph-reg Done 8.0.0 --ltavox2vox: output LTA as VOX_TO_VOX transform. --inlta: synthmorph.mni305/aff.lta input LTA transform. --outlta: talairach.xfm.lta output LTA. LTA read, type : 1 1.05102 -0.00691 0.00718 2.52761; 0.00204 0.92409 0.36943 -25.13610; -0.02547 -0.33854 1.04454 -6.17598; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file talairach.xfm.lta... lta_convert successful. 8.0.0 --inlta: talairach.xfm.lta input LTA transform. --outmni: talairach.xfm output MNI/XFM matrix. LTA read, type : 1 1.05102 -0.00691 0.00718 2.52762; 0.00204 0.92409 0.36943 -25.13611; -0.02547 -0.33854 1.04454 -6.17598; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. fs-synthmorph-reg --s sub-06DJHEV0_ses-00A --threads 1 --i /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/orig.mgz --test fs-synthmorph-reg: update not needed #-------------------------------------- #@# MCADura Segmentation Tue Apr 21 13:09:42 CDT 2026 MCADura Segmentation does not need to be updated #-------------------------------------- #@# VSinus Segmentation Tue Apr 21 13:09:42 CDT 2026 VSinus Segmentation does not need to be updated #-------------------------------------- #@# EntoWM Segmentation Tue Apr 21 13:09:42 CDT 2026 EntoWM Segmentation does not need to be updated 1 3006 984 1010.7654 wm-lh-entorhinal 2 3201 268 284.3085 wm-lh-gyrus-ambiens 3 4006 858 887.7370 wm-rh-entorhinal 4 4201 266 282.2817 wm-rh-gyrus-ambiens #-------------------------------------- #@# CC Seg Tue Apr 21 13:09:42 CDT 2026 seg2cc --s sub-06DJHEV0_ses-00A Tue Apr 21 13:09:42 CDT 2026 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/seg2cc --s sub-06DJHEV0_ses-00A freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a seg2cc 8.0.0 Linux c-03-15 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A IsConformed yes Tue Apr 21 13:09:42 CDT 2026 mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta transforms/cc_up.lta sub-06DJHEV0_ses-00A will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as transforms/cc_up.lta reading aseg from /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/aseg.auto_noCCseg.mgz reading norm from /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/norm.mgz 23143 voxels in left wm, 53077 in right wm, xrange [124, 132] searching rotation angles z=[-8 6], y=[-7 7] searching scale 1 Z rot -8.4 searching scale 1 Z rot -8.1 searching scale 1 Z rot -7.9 searching scale 1 Z rot -7.6 searching scale 1 Z rot -7.4 searching scale 1 Z rot -7.1 searching scale 1 Z rot -6.9 searching scale 1 Z rot -6.6 searching scale 1 Z rot -6.4 searching scale 1 Z rot -6.1 searching scale 1 Z rot -5.9 searching scale 1 Z rot -5.6 searching scale 1 Z rot -5.4 searching scale 1 Z rot -5.1 searching scale 1 Z rot -4.9 searching scale 1 Z rot -4.6 searching scale 1 Z rot -4.4 searching scale 1 Z rot -4.1 searching scale 1 Z rot -3.9 searching scale 1 Z rot -3.6 searching scale 1 Z rot -3.4 searching scale 1 Z rot -3.1 searching scale 1 Z rot -2.9 searching scale 1 Z rot -2.6 searching scale 1 Z rot -2.4 searching scale 1 Z rot -2.1 searching scale 1 Z rot -1.9 searching scale 1 Z rot -1.6 searching scale 1 Z rot -1.4 searching scale 1 Z rot -1.1 searching scale 1 Z rot -0.9 searching scale 1 Z rot -0.6 searching scale 1 Z rot -0.4 searching scale 1 Z rot -0.1 searching scale 1 Z rot 0.1 searching scale 1 Z rot 0.4 searching scale 1 Z rot 0.6 searching scale 1 Z rot 0.9 searching scale 1 Z rot 1.1 searching scale 1 Z rot 1.4 searching scale 1 Z rot 1.6 searching scale 1 Z rot 1.9 searching scale 1 Z rot 2.1 searching scale 1 Z rot 2.4 searching scale 1 Z rot 2.6 searching scale 1 Z rot 2.9 searching scale 1 Z rot 3.1 searching scale 1 Z rot 3.4 searching scale 1 Z rot 3.6 searching scale 1 Z rot 3.9 searching scale 1 Z rot 4.1 searching scale 1 Z rot 4.4 searching scale 1 Z rot 4.6 searching scale 1 Z rot 4.9 searching scale 1 Z rot 5.1 searching scale 1 Z rot 5.4 searching scale 1 Z rot 5.6 searching scale 1 Z rot 5.9 searching scale 1 Z rot 6.1 global minimum found at slice 129.0, rotations (-0.13, -0.61) final transformation (x=129.0, yr=-0.131, zr=-0.611): 0.99994 0.01067 -0.00229 -1.75157; -0.01067 0.99994 0.00002 34.37880; 0.00229 0.00000 1.00000 16.70489; 0.00000 0.00000 0.00000 1.00000; updating x range to be [126, 131] in xformed coordinates best xformed slice 128 min_x_fornix = 123 min_x_fornix = 121 min_x_fornix = 154 min_x_fornix = 154 min_x_fornix = 120 cc center is found at 128 95 111 eigenvectors: -0.00028 0.00096 1.00000; -0.19213 -0.98137 0.00089; 0.98137 -0.19213 0.00046; error in mid anterior detected - correcting... writing aseg with callosum to /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri/aseg.auto.mgz... corpus callosum segmentation took 0.3 minutes #VMPC# mri_cc VmPeak 432144 mri_cc done Tue Apr 21 13:10:00 CDT 2026 /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A Started at Tue Apr 21 13:09:42 CDT 2026 Ended at Tue Apr 21 13:10:00 CDT 2026 Seg2cc-Run-Time-Sec 18 Seg2cc-Run-Time-Hours 0.00 seg2cc Done #-------------------------------------- #@# Merge ASeg Tue Apr 21 13:10:00 CDT 2026 cp aseg.auto.mgz aseg.presurf.mgz #@# white curv lh Tue Apr 21 13:10:00 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv Update not needed #@# white area lh Tue Apr 21 13:10:00 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area writing curvature file ../surf/lh.area type -1 #@# pial curv lh Tue Apr 21 13:10:01 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial insurf ../surf/lh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv.pial type -1 #@# pial area lh Tue Apr 21 13:10:02 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial Update not needed #@# thickness lh Tue Apr 21 13:10:02 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness 0 of 155887 vertices processed 25000 of 155887 vertices processed 50000 of 155887 vertices processed 75000 of 155887 vertices processed 100000 of 155887 vertices processed 125000 of 155887 vertices processed 150000 of 155887 vertices processed 0 of 155887 vertices processed 25000 of 155887 vertices processed 50000 of 155887 vertices processed 75000 of 155887 vertices processed 100000 of 155887 vertices processed 125000 of 155887 vertices processed 150000 of 155887 vertices processed thickness calculation complete, 188:945 truncations. 57240 vertices at 0 distance 124935 vertices at 1 distance 85031 vertices at 2 distance 29676 vertices at 3 distance 9258 vertices at 4 distance 3277 vertices at 5 distance 1208 vertices at 6 distance 471 vertices at 7 distance 218 vertices at 8 distance 105 vertices at 9 distance 69 vertices at 10 distance 52 vertices at 11 distance 41 vertices at 12 distance 37 vertices at 13 distance 30 vertices at 14 distance 23 vertices at 15 distance 25 vertices at 16 distance 22 vertices at 17 distance 17 vertices at 18 distance 13 vertices at 19 distance 26 vertices at 20 distance writing curvature file ../surf/lh.thickness type -1 #@# area and vertex vol lh Tue Apr 21 13:10:26 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12720 mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12716 vertexvol Done #@# white curv rh Tue Apr 21 13:10:26 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv insurf ../surf/rh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv type -1 #@# white area rh Tue Apr 21 13:10:28 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area writing curvature file ../surf/rh.area type -1 #@# pial curv rh Tue Apr 21 13:10:28 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial Update not needed #@# pial area rh Tue Apr 21 13:10:28 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial Update not needed #@# thickness rh Tue Apr 21 13:10:28 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness Update not needed #@# area and vertex vol rh Tue Apr 21 13:10:28 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/mri /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12692 mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12688 mris_convert --volume sub-06DJHEV0_ses-00A rh /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/rh.volume mris_convert --volume sub-06DJHEV0_ses-00A rh /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/rh.volume masking with /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/label/rh.cortex.label Total face volume 307637 Total vertex volume 307474 (mask=0) #@# sub-06DJHEV0_ses-00A rh 307474 vertexvol Done /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf #-------------------------------------------- #@# Local Gyrification Index lh Tue Apr 21 13:10:30 CDT 2026 mris_compute_lgi --i lh.pial ================= rm -Rf /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 70804 voxel in cpt #1: X=2 [v=70804,e=212406,f=141604] located at (-26.984232, -14.017031, 23.494675) For the whole surface: X=2 [v=70804,e=212406,f=141604] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 70804 - 212406 + 141604 = 2 --> 0 holes F =2V-4: 141604 = 141608-4 (0) 2E=3F: 424812 = 424812 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= mris_convert -n lh.pial-outer-smoothed /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc Reading in lh.pial-outer-smoothed Outputting normals /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial','/tmp/tmp.56C4l6.m'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.07 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 15.4500 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial','/tmp/tmp.sn3nt3.m'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.04 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 141604 face 10000 / 141604 face 15000 / 141604 face 20000 / 141604 face 25000 / 141604 face 30000 / 141604 face 35000 / 141604 face 40000 / 141604 face 45000 / 141604 face 50000 / 141604 face 55000 / 141604 face 60000 / 141604 face 65000 / 141604 face 70000 / 141604 face 75000 / 141604 face 80000 / 141604 face 85000 / 141604 face 90000 / 141604 face 95000 / 141604 face 100000 / 141604 face 105000 / 141604 face 110000 / 141604 face 115000 / 141604 face 120000 / 141604 face 125000 / 141604 face 130000 / 141604 face 135000 / 141604 face 140000 / 141604 mesh_outer = struct with fields: vertices: [70804x3 double] faces: [141604x3 double] facesOfVertex: [70804x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (84.97 sec). ... creating path file for vertex 1 / 70804 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 70804 ... creating path file for vertex 201 / 70804 ... creating path file for vertex 301 / 70804 ... creating path file for vertex 401 / 70804 ... creating path file for vertex 501 / 70804 ... creating path file for vertex 601 / 70804 ... creating path file for vertex 701 / 70804 ... creating path file for vertex 801 / 70804 ... creating path file for vertex 901 / 70804 ... creating path file for vertex 1001 / 70804 ... creating path file for vertex 1101 / 70804 ... creating path file for vertex 1201 / 70804 ... creating path file for vertex 1301 / 70804 ... creating path file for vertex 1401 / 70804 ... creating path file for vertex 1501 / 70804 ... creating path file for vertex 1601 / 70804 ... creating path file for vertex 1701 / 70804 ... creating path file for vertex 1801 / 70804 ... creating path file for vertex 1901 / 70804 ... creating path file for vertex 2001 / 70804 ... creating path file for vertex 2101 / 70804 ... creating path file for vertex 2201 / 70804 ... creating path file for vertex 2301 / 70804 ... creating path file for vertex 2401 / 70804 ... creating path file for vertex 2501 / 70804 ... creating path file for vertex 2601 / 70804 ... creating path file for vertex 2701 / 70804 ... creating path file for vertex 2801 / 70804 ... creating path file for vertex 2901 / 70804 ... creating path file for vertex 3001 / 70804 ... creating path file for vertex 3101 / 70804 ... creating path file for vertex 3201 / 70804 ... creating path file for vertex 3301 / 70804 ... creating path file for vertex 3401 / 70804 ... creating path file for vertex 3501 / 70804 ... 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for vertex 5601 / 70804 ... creating path file for vertex 5701 / 70804 ... creating path file for vertex 5801 / 70804 ... creating path file for vertex 5901 / 70804 ... creating path file for vertex 6001 / 70804 ... creating path file for vertex 6101 / 70804 ... creating path file for vertex 6201 / 70804 ... creating path file for vertex 6301 / 70804 ... creating path file for vertex 6401 / 70804 ... creating path file for vertex 6501 / 70804 ... creating path file for vertex 6601 / 70804 ... creating path file for vertex 6701 / 70804 ... creating path file for vertex 6801 / 70804 ... creating path file for vertex 6901 / 70804 ... creating path file for vertex 7001 / 70804 ... creating path file for vertex 7101 / 70804 ... creating path file for vertex 7201 / 70804 ... creating path file for vertex 7301 / 70804 ... creating path file for vertex 7401 / 70804 ... creating path file for vertex 7501 / 70804 ... creating path file for vertex 7601 / 70804 ... creating path file for vertex 7701 / 70804 ... creating path file for vertex 7801 / 70804 ... creating path file for vertex 7901 / 70804 ... creating path file for vertex 8001 / 70804 ... creating path file for vertex 8101 / 70804 ... creating path file for vertex 8201 / 70804 ... creating path file for vertex 8301 / 70804 Launching updater executable ... creating path file for vertex 8401 / 70804 ... creating path file for vertex 8501 / 70804 ... creating path file for vertex 8601 / 70804 ... creating path file for vertex 8701 / 70804 ... creating path file for vertex 8801 / 70804 ... creating path file for vertex 8901 / 70804 ... creating path file for vertex 9001 / 70804 ... creating path file for vertex 9101 / 70804 ... creating path file for vertex 9201 / 70804 ... creating path file for vertex 9301 / 70804 ... creating path file for vertex 9401 / 70804 ... creating path file for vertex 9501 / 70804 ... creating path file for vertex 9601 / 70804 ... creating path file for vertex 9701 / 70804 ... creating path file for vertex 9801 / 70804 ... creating path file for vertex 9901 / 70804 ... creating path file for vertex 10001 / 70804 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 70804 ... creating path file for vertex 10201 / 70804 ... creating path file for vertex 10301 / 70804 ... creating path file for vertex 10401 / 70804 ... creating path file for vertex 10501 / 70804 ... creating path file for vertex 10601 / 70804 ... creating path file for vertex 10701 / 70804 ... creating path file for vertex 10801 / 70804 ... creating path file for vertex 10901 / 70804 ... creating path file for vertex 11001 / 70804 ... creating path file for vertex 11101 / 70804 ... creating path file for vertex 11201 / 70804 ... creating path file for vertex 11301 / 70804 ... creating path file for vertex 11401 / 70804 ... creating path file for vertex 11501 / 70804 ... creating path file for vertex 11601 / 70804 ... creating path file for vertex 11701 / 70804 ... creating path file for vertex 11801 / 70804 ... creating path file for vertex 11901 / 70804 ... creating path file for vertex 12001 / 70804 ... creating path file for vertex 12101 / 70804 ... creating path file for vertex 12201 / 70804 ... creating path file for vertex 12301 / 70804 ... creating path file for vertex 12401 / 70804 ... creating path file for vertex 12501 / 70804 ... creating path file for vertex 12601 / 70804 ... creating path file for vertex 12701 / 70804 ... creating path file for vertex 12801 / 70804 ... creating path file for vertex 12901 / 70804 ... creating path file for vertex 13001 / 70804 ... creating path file for vertex 13101 / 70804 ... creating path file for vertex 13201 / 70804 ... creating path file for vertex 13301 / 70804 ... creating path file for vertex 13401 / 70804 ... creating path file for vertex 13501 / 70804 ... creating path file for vertex 13601 / 70804 ... creating path file for vertex 13701 / 70804 ... creating path file for vertex 13801 / 70804 ... 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creating path file for vertex 15901 / 70804 ... creating path file for vertex 16001 / 70804 ... creating path file for vertex 16101 / 70804 ... creating path file for vertex 16201 / 70804 ... creating path file for vertex 16301 / 70804 ... creating path file for vertex 16401 / 70804 ... creating path file for vertex 16501 / 70804 ... creating path file for vertex 16601 / 70804 ... creating path file for vertex 16701 / 70804 ... creating path file for vertex 16801 / 70804 ... creating path file for vertex 16901 / 70804 ... creating path file for vertex 17001 / 70804 ... creating path file for vertex 17101 / 70804 ... creating path file for vertex 17201 / 70804 ... creating path file for vertex 17301 / 70804 ... creating path file for vertex 17401 / 70804 ... creating path file for vertex 17501 / 70804 ... creating path file for vertex 17601 / 70804 ... creating path file for vertex 17701 / 70804 ... creating path file for vertex 17801 / 70804 ... creating path file for vertex 17901 / 70804 ... creating path file for vertex 18001 / 70804 ... creating path file for vertex 18101 / 70804 ... creating path file for vertex 18201 / 70804 ... creating path file for vertex 18301 / 70804 ... creating path file for vertex 18401 / 70804 ... creating path file for vertex 18501 / 70804 ... creating path file for vertex 18601 / 70804 ... creating path file for vertex 18701 / 70804 ... creating path file for vertex 18801 / 70804 ... creating path file for vertex 18901 / 70804 ... creating path file for vertex 19001 / 70804 ... creating path file for vertex 19101 / 70804 ... creating path file for vertex 19201 / 70804 ... creating path file for vertex 19301 / 70804 ... creating path file for vertex 19401 / 70804 ... creating path file for vertex 19501 / 70804 ... creating path file for vertex 19601 / 70804 ... creating path file for vertex 19701 / 70804 ... creating path file for vertex 19801 / 70804 ... creating path file for vertex 19901 / 70804 ... creating path file for vertex 20001 / 70804 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 70804 ... creating path file for vertex 20201 / 70804 ... creating path file for vertex 20301 / 70804 ... creating path file for vertex 20401 / 70804 ... creating path file for vertex 20501 / 70804 ... creating path file for vertex 20601 / 70804 ... creating path file for vertex 20701 / 70804 ... creating path file for vertex 20801 / 70804 ... creating path file for vertex 20901 / 70804 ... creating path file for vertex 21001 / 70804 ... creating path file for vertex 21101 / 70804 ... creating path file for vertex 21201 / 70804 ... creating path file for vertex 21301 / 70804 ... creating path file for vertex 21401 / 70804 ... creating path file for vertex 21501 / 70804 ... creating path file for vertex 21601 / 70804 ... creating path file for vertex 21701 / 70804 ... creating path file for vertex 21801 / 70804 ... creating path file for vertex 21901 / 70804 ... creating path file for vertex 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vertex 24101 / 70804 ... creating path file for vertex 24201 / 70804 ... creating path file for vertex 24301 / 70804 ... creating path file for vertex 24401 / 70804 ... creating path file for vertex 24501 / 70804 ... creating path file for vertex 24601 / 70804 ... creating path file for vertex 24701 / 70804 ... creating path file for vertex 24801 / 70804 ... creating path file for vertex 24901 / 70804 ... creating path file for vertex 25001 / 70804 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 70804 ... creating path file for vertex 25201 / 70804 ... creating path file for vertex 25301 / 70804 ... creating path file for vertex 25401 / 70804 ... creating path file for vertex 25501 / 70804 ... creating path file for vertex 25601 / 70804 ... creating path file for vertex 25701 / 70804 ... creating path file for vertex 25801 / 70804 ... creating path file for vertex 25901 / 70804 ... creating path file for vertex 26001 / 70804 ... creating path file for vertex 26101 / 70804 ... creating path file for vertex 26201 / 70804 ... creating path file for vertex 26301 / 70804 ... creating path file for vertex 26401 / 70804 ... creating path file for vertex 26501 / 70804 ... creating path file for vertex 26601 / 70804 ... creating path file for vertex 26701 / 70804 ... creating path file for vertex 26801 / 70804 ... creating path file for vertex 26901 / 70804 ... creating path file for vertex 27001 / 70804 ... creating path file for vertex 27101 / 70804 ... creating path file for vertex 27201 / 70804 ... creating path file for vertex 27301 / 70804 ... creating path file for vertex 27401 / 70804 ... creating path file for vertex 27501 / 70804 ... creating path file for vertex 27601 / 70804 ... creating path file for vertex 27701 / 70804 ... creating path file for vertex 27801 / 70804 ... creating path file for vertex 27901 / 70804 ... creating path file for vertex 28001 / 70804 ... creating path file for vertex 28101 / 70804 ... creating path file for vertex 28201 / 70804 ... creating path file for vertex 28301 / 70804 ... creating path file for vertex 28401 / 70804 ... creating path file for vertex 28501 / 70804 ... creating path file for vertex 28601 / 70804 ... creating path file for vertex 28701 / 70804 ... creating path file for vertex 28801 / 70804 ... creating path file for vertex 28901 / 70804 ... creating path file for vertex 29001 / 70804 ... creating path file for vertex 29101 / 70804 ... creating path file for vertex 29201 / 70804 ... creating path file for vertex 29301 / 70804 ... creating path file for vertex 29401 / 70804 ... creating path file for vertex 29501 / 70804 ... creating path file for vertex 29601 / 70804 ... creating path file for vertex 29701 / 70804 ... creating path file for vertex 29801 / 70804 ... creating path file for vertex 29901 / 70804 ... creating path file for vertex 30001 / 70804 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 70804 ... creating path file for vertex 30201 / 70804 ... creating path file for vertex 30301 / 70804 ... creating path file for vertex 30401 / 70804 ... creating path file for vertex 30501 / 70804 ... creating path file for vertex 30601 / 70804 ... creating path file for vertex 30701 / 70804 ... creating path file for vertex 30801 / 70804 ... creating path file for vertex 30901 / 70804 ... creating path file for vertex 31001 / 70804 ... creating path file for vertex 31101 / 70804 ... creating path file for vertex 31201 / 70804 ... creating path file for vertex 31301 / 70804 ... creating path file for vertex 31401 / 70804 ... creating path file for vertex 31501 / 70804 ... creating path file for vertex 31601 / 70804 ... creating path file for vertex 31701 / 70804 ... creating path file for vertex 31801 / 70804 ... creating path file for vertex 31901 / 70804 ... creating path file for vertex 32001 / 70804 ... creating path file for vertex 32101 / 70804 ... creating path file for vertex 32201 / 70804 ... creating path file for vertex 32301 / 70804 ... creating path file for vertex 32401 / 70804 ... creating path file for vertex 32501 / 70804 ... creating path file for vertex 32601 / 70804 ... creating path file for vertex 32701 / 70804 ... creating path file for vertex 32801 / 70804 ... creating path file for vertex 32901 / 70804 ... creating path file for vertex 33001 / 70804 ... creating path file for vertex 33101 / 70804 ... creating path file for vertex 33201 / 70804 ... creating path file for vertex 33301 / 70804 ... creating path file for vertex 33401 / 70804 ... creating path file for vertex 33501 / 70804 ... creating path file for vertex 33601 / 70804 ... creating path file for vertex 33701 / 70804 ... creating path file for vertex 33801 / 70804 ... creating path file for vertex 33901 / 70804 ... creating path file for vertex 34001 / 70804 ... creating path file for vertex 34101 / 70804 ... creating path file for vertex 34201 / 70804 ... creating path file for vertex 34301 / 70804 ... creating path file for vertex 34401 / 70804 ... creating path file for vertex 34501 / 70804 ... creating path file for vertex 34601 / 70804 ... creating path file for vertex 34701 / 70804 ... creating path file for vertex 34801 / 70804 ... creating path file for vertex 34901 / 70804 ... creating path file for vertex 35001 / 70804 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 70804 ... creating path file for vertex 35201 / 70804 ... creating path file for vertex 35301 / 70804 ... creating path file for vertex 35401 / 70804 ... creating path file for vertex 35501 / 70804 ... creating path file for vertex 35601 / 70804 ... creating path file for vertex 35701 / 70804 ... creating path file for vertex 35801 / 70804 ... creating path file for vertex 35901 / 70804 ... creating path file for vertex 36001 / 70804 ... creating path file for vertex 36101 / 70804 ... creating path file for vertex 36201 / 70804 ... creating path file for vertex 36301 / 70804 ... creating path file for vertex 36401 / 70804 ... creating path file for vertex 36501 / 70804 ... creating path file for vertex 36601 / 70804 ... creating path file for vertex 36701 / 70804 ... creating path file for vertex 36801 / 70804 ... creating path file for vertex 36901 / 70804 ... creating path file for vertex 37001 / 70804 ... creating path file for vertex 37101 / 70804 ... creating path file for vertex 37201 / 70804 ... creating path file for vertex 37301 / 70804 ... creating path file for vertex 37401 / 70804 ... creating path file for vertex 37501 / 70804 ... creating path file for vertex 37601 / 70804 ... creating path file for vertex 37701 / 70804 ... creating path file for vertex 37801 / 70804 ... creating path file for vertex 37901 / 70804 ... creating path file for vertex 38001 / 70804 ... creating path file for vertex 38101 / 70804 ... creating path file for vertex 38201 / 70804 ... creating path file for vertex 38301 / 70804 ... creating path file for vertex 38401 / 70804 ... creating path file for vertex 38501 / 70804 ... creating path file for vertex 38601 / 70804 ... creating path file for vertex 38701 / 70804 ... creating path file for vertex 38801 / 70804 ... creating path file for vertex 38901 / 70804 ... creating path file for vertex 39001 / 70804 ... creating path file for vertex 39101 / 70804 ... creating path file for vertex 39201 / 70804 ... creating path file for vertex 39301 / 70804 ... creating path file for vertex 39401 / 70804 ... creating path file for vertex 39501 / 70804 ... creating path file for vertex 39601 / 70804 ... creating path file for vertex 39701 / 70804 ... creating path file for vertex 39801 / 70804 ... creating path file for vertex 39901 / 70804 ... creating path file for vertex 40001 / 70804 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 70804 ... creating path file for vertex 40201 / 70804 ... creating path file for vertex 40301 / 70804 ... creating path file for vertex 40401 / 70804 ... creating path file for vertex 40501 / 70804 ... creating path file for vertex 40601 / 70804 ... creating path file for vertex 40701 / 70804 ... creating path file for vertex 40801 / 70804 ... creating path file for vertex 40901 / 70804 ... creating path file for vertex 41001 / 70804 ... creating path file for vertex 41101 / 70804 ... creating path file for vertex 41201 / 70804 ... creating path file for vertex 41301 / 70804 ... creating path file for vertex 41401 / 70804 ... creating path file for vertex 41501 / 70804 ... creating path file for vertex 41601 / 70804 ... creating path file for vertex 41701 / 70804 ... creating path file for vertex 41801 / 70804 ... creating path file for vertex 41901 / 70804 ... creating path file for vertex 42001 / 70804 ... creating path file for vertex 42101 / 70804 ... creating path file for vertex 42201 / 70804 ... creating path file for vertex 42301 / 70804 ... creating path file for vertex 42401 / 70804 ... creating path file for vertex 42501 / 70804 ... creating path file for vertex 42601 / 70804 ... creating path file for vertex 42701 / 70804 ... creating path file for vertex 42801 / 70804 ... creating path file for vertex 42901 / 70804 ... creating path file for vertex 43001 / 70804 ... creating path file for vertex 43101 / 70804 ... creating path file for vertex 43201 / 70804 ... creating path file for vertex 43301 / 70804 ... creating path file for vertex 43401 / 70804 ... creating path file for vertex 43501 / 70804 ... creating path file for vertex 43601 / 70804 ... creating path file for vertex 43701 / 70804 ... creating path file for vertex 43801 / 70804 ... creating path file for vertex 43901 / 70804 ... creating path file for vertex 44001 / 70804 ... creating path file for vertex 44101 / 70804 ... creating path file for vertex 44201 / 70804 ... creating path file for vertex 44301 / 70804 ... creating path file for vertex 44401 / 70804 ... creating path file for vertex 44501 / 70804 ... creating path file for vertex 44601 / 70804 ... creating path file for vertex 44701 / 70804 ... creating path file for vertex 44801 / 70804 ... creating path file for vertex 44901 / 70804 ... creating path file for vertex 45001 / 70804 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 70804 ... creating path file for vertex 45201 / 70804 ... creating path file for vertex 45301 / 70804 ... creating path file for vertex 45401 / 70804 ... creating path file for vertex 45501 / 70804 ... creating path file for vertex 45601 / 70804 ... creating path file for vertex 45701 / 70804 ... creating path file for vertex 45801 / 70804 ... creating path file for vertex 45901 / 70804 ... creating path file for vertex 46001 / 70804 ... creating path file for vertex 46101 / 70804 ... creating path file for vertex 46201 / 70804 ... creating path file for vertex 46301 / 70804 ... creating path file for vertex 46401 / 70804 ... creating path file for vertex 46501 / 70804 ... creating path file for vertex 46601 / 70804 ... creating path file for vertex 46701 / 70804 ... creating path file for vertex 46801 / 70804 ... creating path file for vertex 46901 / 70804 ... creating path file for vertex 47001 / 70804 ... creating path file for vertex 47101 / 70804 ... creating path file for vertex 47201 / 70804 ... creating path file for vertex 47301 / 70804 ... creating path file for vertex 47401 / 70804 ... creating path file for vertex 47501 / 70804 ... creating path file for vertex 47601 / 70804 ... creating path file for vertex 47701 / 70804 ... creating path file for vertex 47801 / 70804 ... creating path file for vertex 47901 / 70804 ... creating path file for vertex 48001 / 70804 ... creating path file for vertex 48101 / 70804 ... creating path file for vertex 48201 / 70804 ... creating path file for vertex 48301 / 70804 ... creating path file for vertex 48401 / 70804 ... creating path file for vertex 48501 / 70804 ... creating path file for vertex 48601 / 70804 ... creating path file for vertex 48701 / 70804 ... creating path file for vertex 48801 / 70804 ... creating path file for vertex 48901 / 70804 ... creating path file for vertex 49001 / 70804 ... creating path file for vertex 49101 / 70804 ... creating path file for vertex 49201 / 70804 ... creating path file for vertex 49301 / 70804 ... creating path file for vertex 49401 / 70804 ... creating path file for vertex 49501 / 70804 ... creating path file for vertex 49601 / 70804 ... creating path file for vertex 49701 / 70804 ... creating path file for vertex 49801 / 70804 ... creating path file for vertex 49901 / 70804 ... creating path file for vertex 50001 / 70804 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 70804 ... creating path file for vertex 50201 / 70804 ... creating path file for vertex 50301 / 70804 ... creating path file for vertex 50401 / 70804 ... creating path file for vertex 50501 / 70804 ... creating path file for vertex 50601 / 70804 ... creating path file for vertex 50701 / 70804 ... creating path file for vertex 50801 / 70804 ... creating path file for vertex 50901 / 70804 ... creating path file for vertex 51001 / 70804 ... creating path file for vertex 51101 / 70804 ... creating path file for vertex 51201 / 70804 ... creating path file for vertex 51301 / 70804 ... creating path file for vertex 51401 / 70804 ... creating path file for vertex 51501 / 70804 ... creating path file for vertex 51601 / 70804 ... creating path file for vertex 51701 / 70804 ... creating path file for vertex 51801 / 70804 ... creating path file for vertex 51901 / 70804 ... creating path file for vertex 52001 / 70804 ... creating path file for vertex 52101 / 70804 ... creating path file for vertex 52201 / 70804 ... creating path file for vertex 52301 / 70804 ... creating path file for vertex 52401 / 70804 ... creating path file for vertex 52501 / 70804 ... creating path file for vertex 52601 / 70804 ... creating path file for vertex 52701 / 70804 ... creating path file for vertex 52801 / 70804 ... creating path file for vertex 52901 / 70804 ... creating path file for vertex 53001 / 70804 ... creating path file for vertex 53101 / 70804 ... creating path file for vertex 53201 / 70804 ... creating path file for vertex 53301 / 70804 ... creating path file for vertex 53401 / 70804 ... creating path file for vertex 53501 / 70804 ... creating path file for vertex 53601 / 70804 ... creating path file for vertex 53701 / 70804 ... creating path file for vertex 53801 / 70804 ... creating path file for vertex 53901 / 70804 ... creating path file for vertex 54001 / 70804 ... creating path file for vertex 54101 / 70804 ... creating path file for vertex 54201 / 70804 ... creating path file for vertex 54301 / 70804 ... creating path file for vertex 54401 / 70804 ... creating path file for vertex 54501 / 70804 ... creating path file for vertex 54601 / 70804 ... creating path file for vertex 54701 / 70804 ... creating path file for vertex 54801 / 70804 ... creating path file for vertex 54901 / 70804 ... creating path file for vertex 55001 / 70804 area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 70804 ... creating path file for vertex 55201 / 70804 ... creating path file for vertex 55301 / 70804 ... creating path file for vertex 55401 / 70804 ... creating path file for vertex 55501 / 70804 ... creating path file for vertex 55601 / 70804 ... creating path file for vertex 55701 / 70804 ... creating path file for vertex 55801 / 70804 ... creating path file for vertex 55901 / 70804 ... creating path file for vertex 56001 / 70804 ... creating path file for vertex 56101 / 70804 ... creating path file for vertex 56201 / 70804 ... creating path file for vertex 56301 / 70804 ... creating path file for vertex 56401 / 70804 ... creating path file for vertex 56501 / 70804 ... creating path file for vertex 56601 / 70804 ... creating path file for vertex 56701 / 70804 ... creating path file for vertex 56801 / 70804 ... creating path file for vertex 56901 / 70804 ... creating path file for vertex 57001 / 70804 ... creating path file for vertex 57101 / 70804 ... creating path file for vertex 57201 / 70804 ... creating path file for vertex 57301 / 70804 ... creating path file for vertex 57401 / 70804 ... creating path file for vertex 57501 / 70804 ... creating path file for vertex 57601 / 70804 ... creating path file for vertex 57701 / 70804 ... creating path file for vertex 57801 / 70804 ... creating path file for vertex 57901 / 70804 ... creating path file for vertex 58001 / 70804 ... creating path file for vertex 58101 / 70804 ... creating path file for vertex 58201 / 70804 ... creating path file for vertex 58301 / 70804 ... creating path file for vertex 58401 / 70804 ... creating path file for vertex 58501 / 70804 ... creating path file for vertex 58601 / 70804 ... creating path file for vertex 58701 / 70804 ... creating path file for vertex 58801 / 70804 ... creating path file for vertex 58901 / 70804 ... creating path file for vertex 59001 / 70804 ... creating path file for vertex 59101 / 70804 ... creating path file for vertex 59201 / 70804 ... creating path file for vertex 59301 / 70804 ... creating path file for vertex 59401 / 70804 ... creating path file for vertex 59501 / 70804 ... creating path file for vertex 59601 / 70804 ... creating path file for vertex 59701 / 70804 ... creating path file for vertex 59801 / 70804 ... creating path file for vertex 59901 / 70804 ... creating path file for vertex 60001 / 70804 area file for outer ROIs saved at 60001 ... creating path file for vertex 60101 / 70804 non geodesic regions removed from the patch ... creating path file for vertex 60201 / 70804 ... creating path file for vertex 60301 / 70804 ... creating path file for vertex 60401 / 70804 ... creating path file for vertex 60501 / 70804 ... creating path file for vertex 60601 / 70804 ... creating path file for vertex 60701 / 70804 ... creating path file for vertex 60801 / 70804 ... creating path file for vertex 60901 / 70804 ... creating path file for vertex 61001 / 70804 ... creating path file for vertex 61101 / 70804 ... creating path file for vertex 61201 / 70804 ... creating path file for vertex 61301 / 70804 ... creating path file for vertex 61401 / 70804 ... creating path file for vertex 61501 / 70804 ... creating path file for vertex 61601 / 70804 ... creating path file for vertex 61701 / 70804 ... creating path file for vertex 61801 / 70804 ... creating path file for vertex 61901 / 70804 ... creating path file for vertex 62001 / 70804 ... creating path file for vertex 62101 / 70804 ... creating path file for vertex 62201 / 70804 ... creating path file for vertex 62301 / 70804 ... creating path file for vertex 62401 / 70804 ... creating path file for vertex 62501 / 70804 ... creating path file for vertex 62601 / 70804 ... creating path file for vertex 62701 / 70804 ... creating path file for vertex 62801 / 70804 ... creating path file for vertex 62901 / 70804 ... creating path file for vertex 63001 / 70804 ... creating path file for vertex 63101 / 70804 ... creating path file for vertex 63201 / 70804 ... creating path file for vertex 63301 / 70804 ... creating path file for vertex 63401 / 70804 ... creating path file for vertex 63501 / 70804 ... creating path file for vertex 63601 / 70804 ... creating path file for vertex 63701 / 70804 ... creating path file for vertex 63801 / 70804 ... creating path file for vertex 63901 / 70804 ... creating path file for vertex 64001 / 70804 ... creating path file for vertex 64101 / 70804 ... creating path file for vertex 64201 / 70804 ... creating path file for vertex 64301 / 70804 ... creating path file for vertex 64401 / 70804 ... creating path file for vertex 64501 / 70804 ... creating path file for vertex 64601 / 70804 ... creating path file for vertex 64701 / 70804 ... creating path file for vertex 64801 / 70804 ... creating path file for vertex 64901 / 70804 ... creating path file for vertex 65001 / 70804 area file for outer ROIs saved at 65001 ... creating path file for vertex 65101 / 70804 ... creating path file for vertex 65201 / 70804 ... creating path file for vertex 65301 / 70804 ... creating path file for vertex 65401 / 70804 ... creating path file for vertex 65501 / 70804 ... creating path file for vertex 65601 / 70804 ... creating path file for vertex 65701 / 70804 ... creating path file for vertex 65801 / 70804 ... creating path file for vertex 65901 / 70804 ... creating path file for vertex 66001 / 70804 ... creating path file for vertex 66101 / 70804 ... creating path file for vertex 66201 / 70804 ... creating path file for vertex 66301 / 70804 ... creating path file for vertex 66401 / 70804 ... creating path file for vertex 66501 / 70804 ... creating path file for vertex 66601 / 70804 ... creating path file for vertex 66701 / 70804 ... creating path file for vertex 66801 / 70804 ... creating path file for vertex 66901 / 70804 ... creating path file for vertex 67001 / 70804 ... creating path file for vertex 67101 / 70804 ... creating path file for vertex 67201 / 70804 ... creating path file for vertex 67301 / 70804 ... creating path file for vertex 67401 / 70804 ... creating path file for vertex 67501 / 70804 ... creating path file for vertex 67601 / 70804 ... creating path file for vertex 67701 / 70804 ... creating path file for vertex 67801 / 70804 ... creating path file for vertex 67901 / 70804 ... creating path file for vertex 68001 / 70804 ... creating path file for vertex 68101 / 70804 ... creating path file for vertex 68201 / 70804 ... creating path file for vertex 68301 / 70804 ... creating path file for vertex 68401 / 70804 ... creating path file for vertex 68501 / 70804 ... creating path file for vertex 68601 / 70804 ... creating path file for vertex 68701 / 70804 ... creating path file for vertex 68801 / 70804 ... creating path file for vertex 68901 / 70804 ... creating path file for vertex 69001 / 70804 ... creating path file for vertex 69101 / 70804 ... creating path file for vertex 69201 / 70804 ... creating path file for vertex 69301 / 70804 ... creating path file for vertex 69401 / 70804 ... creating path file for vertex 69501 / 70804 ... creating path file for vertex 69601 / 70804 ... creating path file for vertex 69701 / 70804 ... creating path file for vertex 69801 / 70804 ... creating path file for vertex 69901 / 70804 ... creating path file for vertex 70001 / 70804 area file for outer ROIs saved at 70001 ... creating path file for vertex 70101 / 70804 ... creating path file for vertex 70201 / 70804 ... creating path file for vertex 70301 / 70804 ... creating path file for vertex 70401 / 70804 ... creating path file for vertex 70501 / 70804 ... creating path file for vertex 70601 / 70804 ... creating path file for vertex 70701 / 70804 ... creating path file for vertex 70801 / 70804 saving area file in matlab format... DONE. deltaT = 4.4155e+04 ================= mri_path2label --confillxfn lh.pial /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input ================= Reading lh.pial Connecting and filling vertices in path at fillseed 179 Finding path.............................................................................................................................................................................. done Filling 179 nlabel 6043 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000001.label Connecting and filling vertices in path at fillseed 140 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 140 nlabel 9215 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000101.label Connecting and filling vertices in path at fillseed 206 Finding path.................................................................................................................................... done Filling 206 nlabel 5753 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000201.label Connecting and filling vertices in path at fillseed 134283 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 134283 nlabel 7976 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000301.label Connecting and filling vertices in path at fillseed 242 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 242 nlabel 9614 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000401.label Connecting and filling vertices in path at fillseed 369 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 369 nlabel 8120 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000501.label Connecting and filling vertices in path at fillseed 130253 Finding path.......................................................................................................................................................... done Filling 130253 nlabel 5169 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000601.label Connecting and filling vertices in path at fillseed 492 Finding path....................................................................................................................................... done Filling 492 nlabel 6123 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000701.label Connecting and filling vertices in path at fillseed 135503 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 135503 nlabel 7650 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000801.label Connecting and filling vertices in path at fillseed 501 Finding path..................................................................................................................................................... done Filling 501 nlabel 5853 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000901.label Connecting and filling vertices in path at fillseed 1161 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 1161 nlabel 9676 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001001.label Connecting and filling vertices in path at fillseed 130988 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130988 nlabel 9635 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001101.label Connecting and filling vertices in path at fillseed 456 Finding path............................................................................................................................................... done Filling 456 nlabel 5207 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001201.label Connecting and filling vertices in path at fillseed 1539 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1539 nlabel 9279 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001301.label Connecting and filling vertices in path at fillseed 145034 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 145034 nlabel 10521 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001401.label Connecting and filling vertices in path at fillseed 131231 Finding path.......................................................................................................................................................................................................................... done Filling 131231 nlabel 7692 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001501.label Connecting and filling vertices in path at fillseed 722 Finding path........................................................................................................................................................................................... done Filling 722 nlabel 5518 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001601.label Connecting and filling vertices in path at fillseed 1150 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1150 nlabel 7980 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001701.label Connecting and filling vertices in path at fillseed 150746 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 150746 nlabel 10400 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001801.label Connecting and filling vertices in path at fillseed 1576 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 1576 nlabel 8205 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001901.label Connecting and filling vertices in path at fillseed 2505 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 2505 nlabel 7564 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002001.label Connecting and filling vertices in path at fillseed 1476 Finding path............................................................................................................................................................................................. done Filling 1476 nlabel 6634 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002101.label Connecting and filling vertices in path at fillseed 2124 Finding path........................................................................................................................................................................................................................ done Filling 2124 nlabel 8413 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002201.label Connecting and filling vertices in path at fillseed 2496 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2496 nlabel 7132 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002301.label Connecting and filling vertices in path at fillseed 2352 Finding path......................................................................................................................................... done Filling 2352 nlabel 6043 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002401.label Connecting and filling vertices in path at fillseed 2180 Finding path................................................................................................................................................................................................................................................................................ done Filling 2180 nlabel 7765 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002501.label Connecting and filling vertices in path at fillseed 1955 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1955 nlabel 8279 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002601.label Connecting and filling vertices in path at fillseed 1936 Finding path................................................................................................................................................ done Filling 1936 nlabel 6153 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002701.label Connecting and filling vertices in path at fillseed 2234 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 2234 nlabel 7874 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002801.label Connecting and filling vertices in path at fillseed 2971 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 2971 nlabel 8812 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002901.label Connecting and filling vertices in path at fillseed 3981 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 3981 nlabel 10689 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003001.label Connecting and filling vertices in path at fillseed 2926 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 2926 nlabel 10110 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003101.label Connecting and filling vertices in path at fillseed 141999 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 141999 nlabel 7242 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003201.label Connecting and filling vertices in path at fillseed 142744 Finding path.................................................................................................................................................................................... done Filling 142744 nlabel 6053 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003301.label Connecting and filling vertices in path at fillseed 4005 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 4005 nlabel 10293 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003401.label Connecting and filling vertices in path at fillseed 4133 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 4133 nlabel 8553 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003501.label Connecting and filling vertices in path at fillseed 3603 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3603 nlabel 8621 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003601.label Connecting and filling vertices in path at fillseed 4519 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 4519 nlabel 8997 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003701.label Connecting and filling vertices in path at fillseed 5018 Finding path..................................................................................................................................................................................................................................................... done Filling 5018 nlabel 7445 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003801.label Connecting and filling vertices in path at fillseed 132174 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 132174 nlabel 8263 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003901.label Connecting and filling vertices in path at fillseed 7017 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 7017 nlabel 7864 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004001.label Connecting and filling vertices in path at fillseed 6932 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6932 nlabel 10234 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004101.label Connecting and filling vertices in path at fillseed 4603 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 4603 nlabel 8694 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004201.label Connecting and filling vertices in path at fillseed 4222 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4222 nlabel 9492 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004301.label Connecting and filling vertices in path at fillseed 5136 Finding path................................................................................................................................................................ done Filling 5136 nlabel 5827 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004401.label Connecting and filling vertices in path at fillseed 6188 Finding path.............................................................................................................................................................. done Filling 6188 nlabel 7166 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004501.label Connecting and filling vertices in path at fillseed 6448 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6448 nlabel 8981 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004601.label Connecting and filling vertices in path at fillseed 3844 Finding path........................................................................................................................................................................................................................ done Filling 3844 nlabel 6498 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004701.label Connecting and filling vertices in path at fillseed 134271 Finding path.............................................................................................................................................................. done Filling 134271 nlabel 5498 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004801.label Connecting and filling vertices in path at fillseed 6926 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 6926 nlabel 10706 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004901.label Connecting and filling vertices in path at fillseed 6051 Finding path............................................................................................................................................................................................................................................................................................................................ done Filling 6051 nlabel 8954 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005001.label Connecting and filling vertices in path at fillseed 5976 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 5976 nlabel 10571 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005101.label Connecting and filling vertices in path at fillseed 154665 Finding path......................................................................................................................................................................................................... done Filling 154665 nlabel 5201 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005201.label Connecting and filling vertices in path at fillseed 6794 Finding path...................................................................................................................................................................................................................................... done Filling 6794 nlabel 7565 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005301.label Connecting and filling vertices in path at fillseed 8621 Finding path................................................................................................................................................................................................................................................................................................... done Filling 8621 nlabel 8193 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005401.label Connecting and filling vertices in path at fillseed 6325 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 6325 nlabel 8136 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005501.label Connecting and filling vertices in path at fillseed 136881 Finding path.................................................................................................................................. done Filling 136881 nlabel 6907 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005601.label Connecting and filling vertices in path at fillseed 8878 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 8878 nlabel 7491 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005701.label Connecting and filling vertices in path at fillseed 8253 Finding path.................................................................................................................................................................................. done Filling 8253 nlabel 5904 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005801.label Connecting and filling vertices in path at fillseed 10489 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 10489 nlabel 7735 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005901.label Connecting and filling vertices in path at fillseed 9039 Finding path............................................................................................................................................ done Filling 9039 nlabel 6787 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006001.label Connecting and filling vertices in path at fillseed 7760 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 7760 nlabel 9268 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006101.label Connecting and filling vertices in path at fillseed 8248 Finding path........................................................................................................................................................................................ done Filling 8248 nlabel 5336 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006201.label Connecting and filling vertices in path at fillseed 9742 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 9742 nlabel 7914 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006301.label Connecting and filling vertices in path at fillseed 9038 Finding path................................................................................................................................................ done Filling 9038 nlabel 6729 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006401.label Connecting and filling vertices in path at fillseed 9884 Finding path........................................................................................................................................................................................................................................................................................................... done Filling 9884 nlabel 9805 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006501.label Connecting and filling vertices in path at fillseed 131629 Finding path.......................................................................................................................................................................................................................................... done Filling 131629 nlabel 5619 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006601.label Connecting and filling vertices in path at fillseed 10562 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 10562 nlabel 8170 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006701.label Connecting and filling vertices in path at fillseed 11401 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 11401 nlabel 10711 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006801.label Connecting and filling vertices in path at fillseed 10560 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 10560 nlabel 10621 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006901.label Connecting and filling vertices in path at fillseed 134959 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 134959 nlabel 9059 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007001.label Connecting and filling vertices in path at fillseed 8664 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 8664 nlabel 10433 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007101.label Connecting and filling vertices in path at fillseed 11345 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 11345 nlabel 7447 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007201.label Connecting and filling vertices in path at fillseed 129168 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 129168 nlabel 10276 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007301.label Connecting and filling vertices in path at fillseed 12382 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 12382 nlabel 9131 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007401.label Connecting and filling vertices in path at fillseed 10296 Finding path.................................................................................................................................................................................................... done Filling 10296 nlabel 7147 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007501.label Connecting and filling vertices in path at fillseed 7558 Finding path.................................................................................................................................................................................................. done Filling 7558 nlabel 6074 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007601.label Connecting and filling vertices in path at fillseed 12133 Finding path...................................................................................................................................................................................... done Filling 12133 nlabel 6620 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007701.label Connecting and filling vertices in path at fillseed 11488 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 11488 nlabel 9312 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007801.label Connecting and filling vertices in path at fillseed 150692 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 150692 nlabel 11801 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007901.label Connecting and filling vertices in path at fillseed 9031 Finding path............................................................................................................................................................................... done Filling 9031 nlabel 6195 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008001.label Connecting and filling vertices in path at fillseed 11337 Finding path........................................................................................................................................................................................................... done Filling 11337 nlabel 6243 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008101.label Connecting and filling vertices in path at fillseed 149314 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 149314 nlabel 10726 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008201.label Connecting and filling vertices in path at fillseed 14348 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 14348 nlabel 9481 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008301.label Connecting and filling vertices in path at fillseed 11512 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 11512 nlabel 10341 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008401.label Connecting and filling vertices in path at fillseed 13071 Finding path..................................................................................................................................................................................................................................................................................................................... done Filling 13071 nlabel 6752 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008501.label Connecting and filling vertices in path at fillseed 132338 Finding path....................................................................................................................................................................................................................... done Filling 132338 nlabel 6228 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008601.label Connecting and filling vertices in path at fillseed 133367 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 133367 nlabel 8796 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008701.label Connecting and filling vertices in path at fillseed 11113 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 11113 nlabel 8339 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008801.label Connecting and filling vertices in path at fillseed 14008 Finding path......................................................................................................................................................................................................................................... done Filling 14008 nlabel 6349 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008901.label Connecting and filling vertices in path at fillseed 14040 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 14040 nlabel 9501 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009001.label Connecting and filling vertices in path at fillseed 13900 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 13900 nlabel 8050 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009101.label Connecting and filling vertices in path at fillseed 13527 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 13527 nlabel 9191 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009201.label Connecting and filling vertices in path at fillseed 12061 Finding path................................................................................................................................................... done Filling 12061 nlabel 6516 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009301.label Connecting and filling vertices in path at fillseed 128970 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 128970 nlabel 8700 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009401.label Connecting and filling vertices in path at fillseed 16025 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 16025 nlabel 10911 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009501.label Connecting and filling vertices in path at fillseed 147703 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 147703 nlabel 9531 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009601.label Connecting and filling vertices in path at fillseed 133537 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 133537 nlabel 10264 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009701.label Connecting and filling vertices in path at fillseed 13050 Finding path.......................................................................................................................................................................... done Filling 13050 nlabel 6537 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009801.label Connecting and filling vertices in path at fillseed 15901 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15901 nlabel 10864 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009901.label Connecting and filling vertices in path at fillseed 16637 Finding path..................................................................................................................................................................................................................................................................................... done Filling 16637 nlabel 9026 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010001.label Connecting and filling vertices in path at fillseed 11971 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 11971 nlabel 8481 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010101.label Connecting and filling vertices in path at fillseed 16952 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 16952 nlabel 7217 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010201.label Connecting and filling vertices in path at fillseed 13971 Finding path............................................................................................................................................................................................................... done Filling 13971 nlabel 6965 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010301.label Connecting and filling vertices in path at fillseed 14844 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 14844 nlabel 8910 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010401.label Connecting and filling vertices in path at fillseed 16305 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16305 nlabel 12793 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010501.label Connecting and filling vertices in path at fillseed 143157 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 143157 nlabel 10003 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010601.label Connecting and filling vertices in path at fillseed 16902 Finding path.................................................................................................................................................................................................................................................... done Filling 16902 nlabel 6680 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010701.label Connecting and filling vertices in path at fillseed 16892 Finding path................................................................................................................................................................................ done Filling 16892 nlabel 6514 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010801.label Connecting and filling vertices in path at fillseed 15127 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 15127 nlabel 10596 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010901.label Connecting and filling vertices in path at fillseed 131469 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 131469 nlabel 10672 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011001.label Connecting and filling vertices in path at fillseed 16982 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 16982 nlabel 7694 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011101.label Connecting and filling vertices in path at fillseed 153613 Finding path........................................................................................................................................................................................................................... done Filling 153613 nlabel 6487 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011201.label Connecting and filling vertices in path at fillseed 20158 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 20158 nlabel 10033 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011301.label Connecting and filling vertices in path at fillseed 17558 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 17558 nlabel 7973 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011401.label Connecting and filling vertices in path at fillseed 18051 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 18051 nlabel 8266 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011501.label Connecting and filling vertices in path at fillseed 20931 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 20931 nlabel 9781 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011601.label Connecting and filling vertices in path at fillseed 21094 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21094 nlabel 12020 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011701.label Connecting and filling vertices in path at fillseed 18464 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 18464 nlabel 11063 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011801.label Connecting and filling vertices in path at fillseed 16758 Finding path.............................................................................................................................................................................................................................. done Filling 16758 nlabel 6408 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011901.label Connecting and filling vertices in path at fillseed 20933 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20933 nlabel 10657 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012001.label Connecting and filling vertices in path at fillseed 22127 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 22127 nlabel 11268 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012101.label Connecting and filling vertices in path at fillseed 21361 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21361 nlabel 11079 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012201.label Connecting and filling vertices in path at fillseed 20731 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 20731 nlabel 9595 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012301.label Connecting and filling vertices in path at fillseed 147729 Finding path...................................................................................................................................................................................... done Filling 147729 nlabel 6858 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012401.label Connecting and filling vertices in path at fillseed 20036 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 20036 nlabel 11460 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012501.label Connecting and filling vertices in path at fillseed 19800 Finding path........................................................................................................................................................................................................................... done Filling 19800 nlabel 8497 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012601.label Connecting and filling vertices in path at fillseed 19206 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 19206 nlabel 8630 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012701.label Connecting and filling vertices in path at fillseed 21970 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 21970 nlabel 7992 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012801.label Connecting and filling vertices in path at fillseed 19970 Finding path.................................................................................................................................................................................................................................................................................. done Filling 19970 nlabel 7439 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012901.label Connecting and filling vertices in path at fillseed 22181 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22181 nlabel 11932 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013001.label Connecting and filling vertices in path at fillseed 23578 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 23578 nlabel 9408 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013101.label Connecting and filling vertices in path at fillseed 23217 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23217 nlabel 9656 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013201.label Connecting and filling vertices in path at fillseed 20927 Finding path.................................................................................................................................................................................................... done Filling 20927 nlabel 7197 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013301.label Connecting and filling vertices in path at fillseed 19968 Finding path.............................................................................................................................................................................................................................................................. done Filling 19968 nlabel 8066 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013401.label Connecting and filling vertices in path at fillseed 25296 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25296 nlabel 10183 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013501.label Connecting and filling vertices in path at fillseed 24628 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 24628 nlabel 9881 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013601.label Connecting and filling vertices in path at fillseed 24504 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 24504 nlabel 10571 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013701.label Connecting and filling vertices in path at fillseed 19937 Finding path................................................................................................................................................................................................................. done Filling 19937 nlabel 7289 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013801.label Connecting and filling vertices in path at fillseed 22974 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 22974 nlabel 11385 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013901.label Connecting and filling vertices in path at fillseed 25450 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 25450 nlabel 9490 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014001.label Connecting and filling vertices in path at fillseed 23050 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 23050 nlabel 7089 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014101.label Connecting and filling vertices in path at fillseed 20908 Finding path..................................................................................................................................................................................... done Filling 20908 nlabel 6726 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014201.label Connecting and filling vertices in path at fillseed 25089 Finding path........................................................................................................................................................................................................................ done Filling 25089 nlabel 7953 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014301.label Connecting and filling vertices in path at fillseed 26355 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 26355 nlabel 10442 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014401.label Connecting and filling vertices in path at fillseed 25223 Finding path........................................................................................................................................................................................................................................................................................ done Filling 25223 nlabel 7140 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014501.label Connecting and filling vertices in path at fillseed 22773 Finding path..................................................................................................................................................................................................................................................................... done Filling 22773 nlabel 8885 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014601.label Connecting and filling vertices in path at fillseed 25029 Finding path................................................................................................................................................................. done Filling 25029 nlabel 7246 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014701.label Connecting and filling vertices in path at fillseed 25129 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 25129 nlabel 10234 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014801.label Connecting and filling vertices in path at fillseed 30847 Finding path........................................................................................................................................................................................................................................................................ done Filling 30847 nlabel 8048 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014901.label Connecting and filling vertices in path at fillseed 24303 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24303 nlabel 8106 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015001.label Connecting and filling vertices in path at fillseed 28062 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 28062 nlabel 6489 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015101.label Connecting and filling vertices in path at fillseed 29046 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 29046 nlabel 7445 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015201.label Connecting and filling vertices in path at fillseed 27184 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 27184 nlabel 10476 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015301.label Connecting and filling vertices in path at fillseed 28339 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28339 nlabel 10352 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015401.label Connecting and filling vertices in path at fillseed 25659 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 25659 nlabel 9653 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015501.label Connecting and filling vertices in path at fillseed 30103 Finding path................................................................................................................................................................................................................................... done Filling 30103 nlabel 6667 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015601.label Connecting and filling vertices in path at fillseed 25009 Finding path........................................................................................................................................................................................................................................................................................ done Filling 25009 nlabel 6707 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015701.label Connecting and filling vertices in path at fillseed 27173 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 27173 nlabel 9407 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015801.label Connecting and filling vertices in path at fillseed 30915 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 30915 nlabel 8242 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015901.label Connecting and filling vertices in path at fillseed 140213 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 140213 nlabel 9077 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016001.label Connecting and filling vertices in path at fillseed 25904 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 25904 nlabel 8913 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016101.label Connecting and filling vertices in path at fillseed 27048 Finding path............................................................................................................................................... done Filling 27048 nlabel 6866 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016201.label Connecting and filling vertices in path at fillseed 29195 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 29195 nlabel 11125 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016301.label Connecting and filling vertices in path at fillseed 30860 Finding path............................................................................................................................................................................................................................................................................................ done Filling 30860 nlabel 7267 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016401.label Connecting and filling vertices in path at fillseed 26478 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 26478 nlabel 7974 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016501.label Connecting and filling vertices in path at fillseed 25999 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 25999 nlabel 8412 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016601.label Connecting and filling vertices in path at fillseed 152657 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 152657 nlabel 9706 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016701.label Connecting and filling vertices in path at fillseed 32070 Finding path..................................................................................................................................................................................................................................................................................... done Filling 32070 nlabel 7690 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016801.label Connecting and filling vertices in path at fillseed 31475 Finding path.......................................................................................................................................................................................................................................................................................................................................... done Filling 31475 nlabel 8445 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016901.label Connecting and filling vertices in path at fillseed 26502 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 26502 nlabel 7735 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017001.label Connecting and filling vertices in path at fillseed 27981 Finding path............................................................................................................................................................................................................................................................................................ done Filling 27981 nlabel 7234 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017101.label Connecting and filling vertices in path at fillseed 30001 Finding path............................................................................................................................................................................................. done Filling 30001 nlabel 5993 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017201.label Connecting and filling vertices in path at fillseed 30422 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 30422 nlabel 8662 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017301.label Connecting and filling vertices in path at fillseed 27476 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 27476 nlabel 7843 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017401.label Connecting and filling vertices in path at fillseed 28875 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 28875 nlabel 8524 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017501.label Connecting and filling vertices in path at fillseed 28022 Finding path........................................................................................................................................................................................................ done Filling 28022 nlabel 7472 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017601.label Connecting and filling vertices in path at fillseed 34068 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 34068 nlabel 7339 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017701.label Connecting and filling vertices in path at fillseed 29633 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 29633 nlabel 8955 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017801.label Connecting and filling vertices in path at fillseed 29745 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 29745 nlabel 8313 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017901.label Connecting and filling vertices in path at fillseed 29957 Finding path........................................................................................................................................................................................................................................................................................... done Filling 29957 nlabel 6877 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018001.label Connecting and filling vertices in path at fillseed 32119 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 32119 nlabel 6777 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018101.label Connecting and filling vertices in path at fillseed 33982 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33982 nlabel 9494 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018201.label Connecting and filling vertices in path at fillseed 33431 Finding path.............................................................................................................................................. done Filling 33431 nlabel 7132 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018301.label Connecting and filling vertices in path at fillseed 34134 Finding path................................................................................................................................................................................................................................................................................................. done Filling 34134 nlabel 6793 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018401.label Connecting and filling vertices in path at fillseed 29994 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 29994 nlabel 7045 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018501.label Connecting and filling vertices in path at fillseed 36110 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 36110 nlabel 7257 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018601.label Connecting and filling vertices in path at fillseed 34459 Finding path.......................................................................................................................................................................... done Filling 34459 nlabel 7194 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018701.label Connecting and filling vertices in path at fillseed 32922 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 32922 nlabel 8720 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018801.label Connecting and filling vertices in path at fillseed 31060 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 31060 nlabel 8683 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018901.label Connecting and filling vertices in path at fillseed 36292 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36292 nlabel 9651 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019001.label Connecting and filling vertices in path at fillseed 38329 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38329 nlabel 8347 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019101.label Connecting and filling vertices in path at fillseed 36281 Finding path............................................................................................................................................................................................................................... done Filling 36281 nlabel 6687 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019201.label Connecting and filling vertices in path at fillseed 34005 Finding path........................................................................................................................................................................................................................................................................................................... done Filling 34005 nlabel 8340 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019301.label Connecting and filling vertices in path at fillseed 139771 Finding path....................................................................................................................................................................................................... done Filling 139771 nlabel 6627 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019401.label Connecting and filling vertices in path at fillseed 37037 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 37037 nlabel 7256 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019501.label Connecting and filling vertices in path at fillseed 36294 Finding path........................................................................................................................................................................................................................... done Filling 36294 nlabel 7181 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019601.label Connecting and filling vertices in path at fillseed 35211 Finding path......................................................................................................................................................................................................................................................................... done Filling 35211 nlabel 6247 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019701.label Connecting and filling vertices in path at fillseed 37056 Finding path.............................................................................................................................................................................................................................................. done Filling 37056 nlabel 7454 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019801.label Connecting and filling vertices in path at fillseed 37016 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37016 nlabel 8070 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019901.label Connecting and filling vertices in path at fillseed 37117 Finding path.............................................................................................................................................................................................................................................................. done Filling 37117 nlabel 7138 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020001.label Connecting and filling vertices in path at fillseed 35205 Finding path................................................................................................................................................................................................................................................................. done Filling 35205 nlabel 6398 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020101.label Connecting and filling vertices in path at fillseed 39823 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39823 nlabel 10476 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020201.label Connecting and filling vertices in path at fillseed 38650 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 38650 nlabel 8818 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020301.label Connecting and filling vertices in path at fillseed 38055 Finding path............................................................................................................................................................................................................................................... done Filling 38055 nlabel 7774 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020401.label Connecting and filling vertices in path at fillseed 37071 Finding path............................................................................................................................................................................................................................................................................... done Filling 37071 nlabel 6752 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020501.label Connecting and filling vertices in path at fillseed 39798 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 39798 nlabel 10293 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020601.label Connecting and filling vertices in path at fillseed 40015 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 40015 nlabel 8742 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020701.label Connecting and filling vertices in path at fillseed 39350 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39350 nlabel 11138 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020801.label Connecting and filling vertices in path at fillseed 38454 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 38454 nlabel 8882 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020901.label Connecting and filling vertices in path at fillseed 36173 Finding path.......................................................................................................................................................................................................................................................................................................................................... done Filling 36173 nlabel 8493 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021001.label Connecting and filling vertices in path at fillseed 39769 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39769 nlabel 10548 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021101.label Connecting and filling vertices in path at fillseed 37063 Finding path............................................................................................................................................................................................................................ done Filling 37063 nlabel 6372 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021201.label Connecting and filling vertices in path at fillseed 152736 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 152736 nlabel 7605 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021301.label Connecting and filling vertices in path at fillseed 42063 Finding path............................................................................................................................................................................................................................... done Filling 42063 nlabel 7648 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021401.label Connecting and filling vertices in path at fillseed 141098 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 141098 nlabel 8011 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021501.label Connecting and filling vertices in path at fillseed 148519 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 148519 nlabel 9671 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021601.label Connecting and filling vertices in path at fillseed 42046 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 42046 nlabel 10579 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021701.label Connecting and filling vertices in path at fillseed 39392 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39392 nlabel 11027 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021801.label Connecting and filling vertices in path at fillseed 39393 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 39393 nlabel 8471 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021901.label Connecting and filling vertices in path at fillseed 38724 Finding path........................................................................................................................................................................................................................................................... done Filling 38724 nlabel 7757 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022001.label Connecting and filling vertices in path at fillseed 42752 Finding path................................................................................................................................................................................................................................................... done Filling 42752 nlabel 6138 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022101.label Connecting and filling vertices in path at fillseed 42235 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42235 nlabel 8655 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022201.label Connecting and filling vertices in path at fillseed 38387 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 38387 nlabel 7921 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022301.label Connecting and filling vertices in path at fillseed 43848 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 43848 nlabel 9463 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022401.label Connecting and filling vertices in path at fillseed 43827 Finding path.................................................................................................................................................................................................................................. done Filling 43827 nlabel 6282 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022501.label Connecting and filling vertices in path at fillseed 42214 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 42214 nlabel 10060 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022601.label Connecting and filling vertices in path at fillseed 42844 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 42844 nlabel 7548 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022701.label Connecting and filling vertices in path at fillseed 137971 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 137971 nlabel 9476 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022801.label Connecting and filling vertices in path at fillseed 42872 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 42872 nlabel 11008 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022901.label Connecting and filling vertices in path at fillseed 44312 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 44312 nlabel 10287 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023001.label Connecting and filling vertices in path at fillseed 44262 Finding path................................................................................................................................................................................................... done Filling 44262 nlabel 7236 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023101.label Connecting and filling vertices in path at fillseed 137861 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 137861 nlabel 8142 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023201.label Connecting and filling vertices in path at fillseed 44884 Finding path............................................................................................................................................................................................................................................... done Filling 44884 nlabel 7627 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023301.label Connecting and filling vertices in path at fillseed 41978 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41978 nlabel 10491 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023401.label Connecting and filling vertices in path at fillseed 147925 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 147925 nlabel 11026 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023501.label Connecting and filling vertices in path at fillseed 44579 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 44579 nlabel 7868 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023601.label Connecting and filling vertices in path at fillseed 42759 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 42759 nlabel 8190 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023701.label Connecting and filling vertices in path at fillseed 48040 Finding path.............................................................................................................................................................................................................. done Filling 48040 nlabel 6581 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023801.label Connecting and filling vertices in path at fillseed 46980 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46980 nlabel 9117 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023901.label Connecting and filling vertices in path at fillseed 46753 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 46753 nlabel 6995 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024001.label Connecting and filling vertices in path at fillseed 45904 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 45904 nlabel 8029 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024101.label Connecting and filling vertices in path at fillseed 47212 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 47212 nlabel 10571 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024201.label Connecting and filling vertices in path at fillseed 48627 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48627 nlabel 12446 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024301.label Connecting and filling vertices in path at fillseed 143969 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 143969 nlabel 6935 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024401.label Connecting and filling vertices in path at fillseed 143829 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 143829 nlabel 8113 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024501.label Connecting and filling vertices in path at fillseed 48979 Finding path.......................................................................................................................................... done Filling 48979 nlabel 6194 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024601.label Connecting and filling vertices in path at fillseed 46648 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 46648 nlabel 11047 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024701.label Connecting and filling vertices in path at fillseed 138691 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 138691 nlabel 6389 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024801.label Connecting and filling vertices in path at fillseed 143829 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 143829 nlabel 7786 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024901.label Connecting and filling vertices in path at fillseed 49980 Finding path................................................................................................................................................................... done Filling 49980 nlabel 6155 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025001.label Connecting and filling vertices in path at fillseed 49609 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49609 nlabel 11842 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025101.label Connecting and filling vertices in path at fillseed 49401 Finding path................................................................................................................................................................................................................................................................. done Filling 49401 nlabel 7239 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025201.label Connecting and filling vertices in path at fillseed 48995 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 48995 nlabel 7532 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025301.label Connecting and filling vertices in path at fillseed 129167 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129167 nlabel 12330 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025401.label Connecting and filling vertices in path at fillseed 48014 Finding path................................................................................................................................................................................................................................................. done Filling 48014 nlabel 7088 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025501.label Connecting and filling vertices in path at fillseed 128893 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 128893 nlabel 5821 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025601.label Connecting and filling vertices in path at fillseed 138226 Finding path................................................................................................................................................................................................................................................................. done Filling 138226 nlabel 6675 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025701.label Connecting and filling vertices in path at fillseed 49952 Finding path..................................................................................................................................................................................................... done Filling 49952 nlabel 6574 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025801.label Connecting and filling vertices in path at fillseed 49271 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 49271 nlabel 9323 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025901.label Connecting and filling vertices in path at fillseed 48572 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48572 nlabel 11137 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026001.label Connecting and filling vertices in path at fillseed 50224 Finding path........................................................................................................................................................................................................... done Filling 50224 nlabel 6161 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026101.label Connecting and filling vertices in path at fillseed 55814 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55814 nlabel 11050 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026201.label Connecting and filling vertices in path at fillseed 51183 Finding path.............................................................................................................................................................................................................................................................................................................................................................................. done Filling 51183 nlabel 10961 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026301.label Connecting and filling vertices in path at fillseed 47612 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 47612 nlabel 9176 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026401.label Connecting and filling vertices in path at fillseed 52203 Finding path............................................................................................................................................................................................................................................................... done Filling 52203 nlabel 6027 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026501.label Connecting and filling vertices in path at fillseed 52942 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 52942 nlabel 9003 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026601.label Connecting and filling vertices in path at fillseed 50078 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50078 nlabel 12074 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026701.label Connecting and filling vertices in path at fillseed 47501 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47501 nlabel 9915 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026801.label Connecting and filling vertices in path at fillseed 52026 Finding path............................................................................................................................................................................................................................................................................ done Filling 52026 nlabel 7666 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026901.label Connecting and filling vertices in path at fillseed 52721 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52721 nlabel 6411 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027001.label Connecting and filling vertices in path at fillseed 140318 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 140318 nlabel 12888 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027101.label Connecting and filling vertices in path at fillseed 48938 Finding path........................................................................................................................................................................................................................................ done Filling 48938 nlabel 7571 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027201.label Connecting and filling vertices in path at fillseed 55129 Finding path.............................................................................................................................................................................................. done Filling 55129 nlabel 6492 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027301.label Connecting and filling vertices in path at fillseed 53575 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 53575 nlabel 6194 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027401.label Connecting and filling vertices in path at fillseed 52889 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 52889 nlabel 7675 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027501.label Connecting and filling vertices in path at fillseed 52284 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 52284 nlabel 9340 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027601.label Connecting and filling vertices in path at fillseed 55401 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 55401 nlabel 11218 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027701.label Connecting and filling vertices in path at fillseed 54422 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 54422 nlabel 4394 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027801.label Connecting and filling vertices in path at fillseed 54662 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 54662 nlabel 8752 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027901.label Connecting and filling vertices in path at fillseed 54934 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54934 nlabel 11358 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028001.label Connecting and filling vertices in path at fillseed 51855 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51855 nlabel 9975 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028101.label Connecting and filling vertices in path at fillseed 55279 Finding path............................................................................................................................................................................................................................................. done Filling 55279 nlabel 6536 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028201.label Connecting and filling vertices in path at fillseed 55636 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55636 nlabel 8150 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028301.label Connecting and filling vertices in path at fillseed 57609 Finding path.................................................................................................................................................................................................................................................................................... done Filling 57609 nlabel 6825 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028401.label Connecting and filling vertices in path at fillseed 55202 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55202 nlabel 12395 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028501.label Connecting and filling vertices in path at fillseed 54955 Finding path.................................................................................................................................................................................................................................................................................... done Filling 54955 nlabel 6380 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028601.label Connecting and filling vertices in path at fillseed 55560 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55560 nlabel 7634 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028701.label Connecting and filling vertices in path at fillseed 56755 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56755 nlabel 12872 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028801.label Connecting and filling vertices in path at fillseed 57613 Finding path............................................................................................................................................................................................................................................................................................................ done Filling 57613 nlabel 6512 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028901.label Connecting and filling vertices in path at fillseed 57280 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 57280 nlabel 12813 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029001.label Connecting and filling vertices in path at fillseed 56431 Finding path.............................................................................................................................................................................................................................................................................................................................................................................. done Filling 56431 nlabel 6153 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029101.label Connecting and filling vertices in path at fillseed 54680 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54680 nlabel 6781 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029201.label Connecting and filling vertices in path at fillseed 60849 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 60849 nlabel 8140 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029301.label Connecting and filling vertices in path at fillseed 59371 Finding path................................................................................................................................................................................................................................................................... done Filling 59371 nlabel 6955 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029401.label Connecting and filling vertices in path at fillseed 56761 Finding path.......................................................................................................................................................................................................................................................................... done Filling 56761 nlabel 7326 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029501.label Connecting and filling vertices in path at fillseed 60442 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 60442 nlabel 8218 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029601.label Connecting and filling vertices in path at fillseed 55766 Finding path....................................................................................................................................................................................................................................... done Filling 55766 nlabel 6490 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029701.label Connecting and filling vertices in path at fillseed 59424 Finding path............................................................................................................................................................................................. done Filling 59424 nlabel 6341 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029801.label Connecting and filling vertices in path at fillseed 60152 Finding path......................................................................................................................................... done Filling 60152 nlabel 4149 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 56720 Finding path........................................................................................................................................................................................................................................................................................ done Filling 56720 nlabel 8123 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 56814 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 56814 nlabel 11970 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030101.label Connecting and filling vertices in path at fillseed 58014 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 58014 nlabel 8975 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030201.label Connecting and filling vertices in path at fillseed 56850 Finding path...................................................................................................................................................................................................................................... done Filling 56850 nlabel 5888 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030301.label Connecting and filling vertices in path at fillseed 128227 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 128227 nlabel 7019 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030401.label Connecting and filling vertices in path at fillseed 143124 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 143124 nlabel 11383 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030501.label Connecting and filling vertices in path at fillseed 149417 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 149417 nlabel 8110 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030601.label Connecting and filling vertices in path at fillseed 62543 Finding path................................................................................................................................................................................................................ done Filling 62543 nlabel 6652 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030701.label Connecting and filling vertices in path at fillseed 141519 Finding path........................................................................................................................................................................................................................................................... done Filling 141519 nlabel 4749 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030801.label Connecting and filling vertices in path at fillseed 57617 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 57617 nlabel 7805 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030901.label Connecting and filling vertices in path at fillseed 64583 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64583 nlabel 10267 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031001.label Connecting and filling vertices in path at fillseed 60094 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 60094 nlabel 6865 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031101.label Connecting and filling vertices in path at fillseed 64730 Finding path................................................................................................................................................................................. done Filling 64730 nlabel 6442 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031201.label Connecting and filling vertices in path at fillseed 61448 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 61448 nlabel 7576 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031301.label Connecting and filling vertices in path at fillseed 61665 Finding path........................................................................................................................................................................................... done Filling 61665 nlabel 6532 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031401.label Connecting and filling vertices in path at fillseed 65777 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65777 nlabel 9023 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031501.label Connecting and filling vertices in path at fillseed 64743 Finding path...................................................................................................................................................................................... done Filling 64743 nlabel 6140 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031601.label Connecting and filling vertices in path at fillseed 64211 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 64211 nlabel 8697 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031701.label Connecting and filling vertices in path at fillseed 60617 Finding path................................................................................................................................................................................................................................................................................................... done Filling 60617 nlabel 9321 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031801.label Connecting and filling vertices in path at fillseed 64717 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64717 nlabel 9122 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031901.label Connecting and filling vertices in path at fillseed 63272 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 63272 nlabel 11080 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032001.label Connecting and filling vertices in path at fillseed 67415 Finding path.................................................................................................................................................................................................................................................................. done Filling 67415 nlabel 6909 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032101.label Connecting and filling vertices in path at fillseed 59531 Finding path................................................................................................................................................................................................................................................ done Filling 59531 nlabel 8110 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032201.label Connecting and filling vertices in path at fillseed 63590 Finding path..................................................................................................................................................................................................................................... done Filling 63590 nlabel 6296 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032301.label Connecting and filling vertices in path at fillseed 146807 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 146807 nlabel 9086 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032401.label Connecting and filling vertices in path at fillseed 67700 Finding path.......................................................................................................................................................................................... done Filling 67700 nlabel 5776 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032501.label Connecting and filling vertices in path at fillseed 65111 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 65111 nlabel 6102 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032601.label Connecting and filling vertices in path at fillseed 64463 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64463 nlabel 9950 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032701.label Connecting and filling vertices in path at fillseed 70370 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 70370 nlabel 7114 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032801.label Connecting and filling vertices in path at fillseed 66360 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 66360 nlabel 7341 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032901.label Connecting and filling vertices in path at fillseed 65466 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 65466 nlabel 6540 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033001.label Connecting and filling vertices in path at fillseed 67294 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 67294 nlabel 9635 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033101.label Connecting and filling vertices in path at fillseed 63623 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63623 nlabel 12683 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033201.label Connecting and filling vertices in path at fillseed 155357 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 155357 nlabel 9008 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033301.label Connecting and filling vertices in path at fillseed 68765 Finding path......................................................................................................................................................................................... done Filling 68765 nlabel 5922 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033401.label Connecting and filling vertices in path at fillseed 68179 Finding path............................................................................................................................................................................................................................................................................................. done Filling 68179 nlabel 8686 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033501.label Connecting and filling vertices in path at fillseed 62681 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 62681 nlabel 10313 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033601.label Connecting and filling vertices in path at fillseed 67699 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 67699 nlabel 9900 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033701.label Connecting and filling vertices in path at fillseed 67497 Finding path............................................................................................................................................................................................................................................................ done Filling 67497 nlabel 5465 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033801.label Connecting and filling vertices in path at fillseed 70389 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 70389 nlabel 5798 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033901.label Connecting and filling vertices in path at fillseed 66361 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66361 nlabel 9675 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034001.label Connecting and filling vertices in path at fillseed 68622 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 68622 nlabel 11045 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034101.label Connecting and filling vertices in path at fillseed 69425 Finding path.................................................................................................................................................................................................................................................... done Filling 69425 nlabel 7535 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034201.label Connecting and filling vertices in path at fillseed 69949 Finding path..................................................................................................................................................................... done Filling 69949 nlabel 5109 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034301.label Connecting and filling vertices in path at fillseed 72121 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 72121 nlabel 9953 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034401.label Connecting and filling vertices in path at fillseed 67507 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 67507 nlabel 11144 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034501.label Connecting and filling vertices in path at fillseed 69811 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 69811 nlabel 149331 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034601.label Connecting and filling vertices in path at fillseed 70630 Finding path..................................................................................................................................................................................................................... done Filling 70630 nlabel 5655 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034701.label Connecting and filling vertices in path at fillseed 71018 Finding path......................................................................................................................................................................................................................................................................... done Filling 71018 nlabel 8833 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034801.label Connecting and filling vertices in path at fillseed 141799 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 141799 nlabel 10581 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034901.label Connecting and filling vertices in path at fillseed 76120 Finding path....................................................................................................................................................................................................................................................................................... done Filling 76120 nlabel 7687 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035001.label Connecting and filling vertices in path at fillseed 70245 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 70245 nlabel 12294 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035101.label Connecting and filling vertices in path at fillseed 135969 Finding path........................................................................................................................................................................................................................................................ done Filling 135969 nlabel 8020 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035201.label Connecting and filling vertices in path at fillseed 72197 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 72197 nlabel 8409 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035301.label Connecting and filling vertices in path at fillseed 154609 Finding path................................................................................................................................................................... done Filling 154609 nlabel 5813 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035401.label Connecting and filling vertices in path at fillseed 69725 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 69725 nlabel 9222 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035501.label Connecting and filling vertices in path at fillseed 71144 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71144 nlabel 12079 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035601.label Connecting and filling vertices in path at fillseed 72882 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 72882 nlabel 8043 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035701.label Connecting and filling vertices in path at fillseed 131066 Finding path....................................................................................................................................................................................................................................................................................... done Filling 131066 nlabel 10057 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035801.label Connecting and filling vertices in path at fillseed 69575 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 69575 nlabel 11986 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035901.label Connecting and filling vertices in path at fillseed 72756 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72756 nlabel 14875 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036001.label Connecting and filling vertices in path at fillseed 72696 Finding path.................................................................................................................................................. done Filling 72696 nlabel 4625 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036101.label Connecting and filling vertices in path at fillseed 145292 Finding path....................................................................................................................................................................................................................................................................................... done Filling 145292 nlabel 9741 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036201.label Connecting and filling vertices in path at fillseed 74211 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74211 nlabel 10304 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036301.label Connecting and filling vertices in path at fillseed 72538 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 72538 nlabel 11314 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036401.label Connecting and filling vertices in path at fillseed 72322 Finding path............................................................................................................................................................................... done Filling 72322 nlabel 5125 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036501.label Connecting and filling vertices in path at fillseed 135993 Finding path............................................................................................................................................................................................................................................................... done Filling 135993 nlabel 5890 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036601.label Connecting and filling vertices in path at fillseed 76204 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76204 nlabel 11347 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036701.label Connecting and filling vertices in path at fillseed 141931 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 141931 nlabel 6756 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036801.label Connecting and filling vertices in path at fillseed 131779 Finding path..................................................................................................................................................................................................... done Filling 131779 nlabel 4776 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036901.label Connecting and filling vertices in path at fillseed 75888 Finding path................................................................................................................................................................................................................................................. done Filling 75888 nlabel 8278 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037001.label Connecting and filling vertices in path at fillseed 76179 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 76179 nlabel 10001 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037101.label Connecting and filling vertices in path at fillseed 77424 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 77424 nlabel 9524 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037201.label Connecting and filling vertices in path at fillseed 76024 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 76024 nlabel 10253 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037301.label Connecting and filling vertices in path at fillseed 74246 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 74246 nlabel 6178 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037401.label Connecting and filling vertices in path at fillseed 78129 Finding path........................................................................................................................................................................................................ done Filling 78129 nlabel 7963 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037501.label Connecting and filling vertices in path at fillseed 77355 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77355 nlabel 10173 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037601.label Connecting and filling vertices in path at fillseed 74848 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 74848 nlabel 13377 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037701.label Connecting and filling vertices in path at fillseed 76143 Finding path................................................................................................................................................................................ done Filling 76143 nlabel 5550 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037801.label Connecting and filling vertices in path at fillseed 78019 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 78019 nlabel 10011 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037901.label Connecting and filling vertices in path at fillseed 79136 Finding path................................................................................................................................... done Filling 79136 nlabel 6073 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038001.label Connecting and filling vertices in path at fillseed 77051 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 77051 nlabel 6825 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038101.label Connecting and filling vertices in path at fillseed 78667 Finding path............................................................................................................................................................................ done Filling 78667 nlabel 4468 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038201.label Connecting and filling vertices in path at fillseed 79034 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79034 nlabel 9123 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038301.label Connecting and filling vertices in path at fillseed 80096 Finding path............................................................................................................................................................ done Filling 80096 nlabel 6426 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038401.label Connecting and filling vertices in path at fillseed 77648 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77648 nlabel 15241 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038501.label Connecting and filling vertices in path at fillseed 78561 Finding path........................................................................................................................................ done Filling 78561 nlabel 4043 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038601.label Connecting and filling vertices in path at fillseed 77988 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 77988 nlabel 8994 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038701.label Connecting and filling vertices in path at fillseed 79268 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79268 nlabel 12382 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038801.label Connecting and filling vertices in path at fillseed 78665 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 78665 nlabel 14656 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038901.label Connecting and filling vertices in path at fillseed 79474 Finding path.......................................................................................................................................................... done Filling 79474 nlabel 5162 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039001.label Connecting and filling vertices in path at fillseed 79033 Finding path........................................................................................................................................................................................................................................................................................................................................................................... done Filling 79033 nlabel 9750 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039101.label Connecting and filling vertices in path at fillseed 79266 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79266 nlabel 12511 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039201.label Connecting and filling vertices in path at fillseed 77529 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77529 nlabel 15098 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039301.label Connecting and filling vertices in path at fillseed 80463 Finding path......................................................................................................................................................................... done Filling 80463 nlabel 5041 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039401.label Connecting and filling vertices in path at fillseed 149060 Finding path............................................................................................................................................... done Filling 149060 nlabel 5080 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039501.label Connecting and filling vertices in path at fillseed 82067 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82067 nlabel 8055 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039601.label Connecting and filling vertices in path at fillseed 83046 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 83046 nlabel 6216 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039701.label Connecting and filling vertices in path at fillseed 82787 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82787 nlabel 13323 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039801.label Connecting and filling vertices in path at fillseed 81676 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 81676 nlabel 5092 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039901.label Connecting and filling vertices in path at fillseed 137191 Finding path............................................................................................................................................................................................................................................................................................. done Filling 137191 nlabel 9284 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040001.label Connecting and filling vertices in path at fillseed 83183 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 83183 nlabel 13293 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040101.label Connecting and filling vertices in path at fillseed 79612 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 79612 nlabel 14477 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040201.label Connecting and filling vertices in path at fillseed 130186 Finding path................................................................................................................................................................ done Filling 130186 nlabel 4700 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040301.label Connecting and filling vertices in path at fillseed 83910 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83910 nlabel 10279 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040401.label Connecting and filling vertices in path at fillseed 83183 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83183 nlabel 13128 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040501.label Connecting and filling vertices in path at fillseed 81623 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 81623 nlabel 15538 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040601.label Connecting and filling vertices in path at fillseed 84237 Finding path.......................................................................................................................................................................... done Filling 84237 nlabel 5374 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040701.label Connecting and filling vertices in path at fillseed 83892 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 83892 nlabel 9336 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040801.label Connecting and filling vertices in path at fillseed 84085 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 84085 nlabel 12548 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040901.label Connecting and filling vertices in path at fillseed 82455 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82455 nlabel 14171 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041001.label Connecting and filling vertices in path at fillseed 83079 Finding path...................................................................................................................... done Filling 83079 nlabel 4039 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041101.label Connecting and filling vertices in path at fillseed 83051 Finding path........................................................................................................................................... done Filling 83051 nlabel 4218 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041201.label Connecting and filling vertices in path at fillseed 83996 Finding path....................................................................................................................................................................................................................... done Filling 83996 nlabel 8387 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041301.label Connecting and filling vertices in path at fillseed 85028 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 85028 nlabel 12940 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041401.label Connecting and filling vertices in path at fillseed 135277 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 135277 nlabel 17064 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041501.label Connecting and filling vertices in path at fillseed 86089 Finding path......................................................................................................................................... done Filling 86089 nlabel 5036 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041601.label Connecting and filling vertices in path at fillseed 84736 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 84736 nlabel 8804 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041701.label Connecting and filling vertices in path at fillseed 88498 Finding path........................................................................................................................................................................................... done Filling 88498 nlabel 6161 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041801.label Connecting and filling vertices in path at fillseed 86735 Finding path...................................................................................................................................... done Filling 86735 nlabel 5172 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041901.label Connecting and filling vertices in path at fillseed 82002 Finding path..................................................................................................................................................................................................................................... done Filling 82002 nlabel 5588 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042001.label Connecting and filling vertices in path at fillseed 86893 Finding path.......................................................................................................................................................................... done Filling 86893 nlabel 4994 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042101.label Connecting and filling vertices in path at fillseed 134426 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 134426 nlabel 9001 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042201.label Connecting and filling vertices in path at fillseed 88521 Finding path.................................................................................................................................................. done Filling 88521 nlabel 6313 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042301.label Connecting and filling vertices in path at fillseed 83518 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 83518 nlabel 16308 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042401.label Connecting and filling vertices in path at fillseed 84006 Finding path........................................................................................................................... done Filling 84006 nlabel 4303 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042501.label Connecting and filling vertices in path at fillseed 86528 Finding path......................................................................................................................................................................................................................................................... done Filling 86528 nlabel 8630 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042601.label Connecting and filling vertices in path at fillseed 89384 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89384 nlabel 7325 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042701.label Connecting and filling vertices in path at fillseed 87660 Finding path........................................................................................................................................ done Filling 87660 nlabel 5159 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042801.label Connecting and filling vertices in path at fillseed 84418 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 84418 nlabel 17521 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042901.label Connecting and filling vertices in path at fillseed 136058 Finding path............................................................................................................................................... done Filling 136058 nlabel 4885 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043001.label Connecting and filling vertices in path at fillseed 89271 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 89271 nlabel 8470 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043101.label Connecting and filling vertices in path at fillseed 90332 Finding path..................................................................................................................................................................... done Filling 90332 nlabel 5762 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043201.label Connecting and filling vertices in path at fillseed 89791 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89791 nlabel 16694 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043301.label Connecting and filling vertices in path at fillseed 89758 Finding path......................................................................................................................................... done Filling 89758 nlabel 4374 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043401.label Connecting and filling vertices in path at fillseed 89139 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 89139 nlabel 8475 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043501.label Connecting and filling vertices in path at fillseed 137953 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 137953 nlabel 8196 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043601.label Connecting and filling vertices in path at fillseed 89551 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89551 nlabel 10154 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043701.label Connecting and filling vertices in path at fillseed 89791 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89791 nlabel 18054 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043801.label Connecting and filling vertices in path at fillseed 90433 Finding path................................................................................................................................................................. done Filling 90433 nlabel 5662 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043901.label Connecting and filling vertices in path at fillseed 87668 Finding path............................................................................................................................................................................................................................................ done Filling 87668 nlabel 4873 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044001.label Connecting and filling vertices in path at fillseed 86742 Finding path......................................................................................................................................................................................................................................................................... done Filling 86742 nlabel 7052 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044101.label Connecting and filling vertices in path at fillseed 138557 Finding path........................................................................................................................................ done Filling 138557 nlabel 5162 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044201.label Connecting and filling vertices in path at fillseed 90216 Finding path..................................................................................................................................................................................................................................................................... done Filling 90216 nlabel 5232 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044301.label Connecting and filling vertices in path at fillseed 93248 Finding path...................................................................................................................................................... done Filling 93248 nlabel 4898 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044401.label Connecting and filling vertices in path at fillseed 91274 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 91274 nlabel 5751 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044501.label Connecting and filling vertices in path at fillseed 89435 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89435 nlabel 9198 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044601.label Connecting and filling vertices in path at fillseed 88798 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 88798 nlabel 9341 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044701.label Connecting and filling vertices in path at fillseed 90992 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 90992 nlabel 15636 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044801.label Connecting and filling vertices in path at fillseed 134139 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 134139 nlabel 8351 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044901.label Connecting and filling vertices in path at fillseed 132922 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 132922 nlabel 7935 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045001.label Connecting and filling vertices in path at fillseed 89509 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89509 nlabel 9799 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045101.label Connecting and filling vertices in path at fillseed 141455 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 141455 nlabel 18284 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045201.label Connecting and filling vertices in path at fillseed 148772 Finding path............................................................................................................................ done Filling 148772 nlabel 4675 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045301.label Connecting and filling vertices in path at fillseed 92982 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 92982 nlabel 7999 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045401.label Connecting and filling vertices in path at fillseed 93131 Finding path................................................................................................................... done Filling 93131 nlabel 4325 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045501.label Connecting and filling vertices in path at fillseed 91429 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91429 nlabel 9903 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045601.label Connecting and filling vertices in path at fillseed 90742 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 90742 nlabel 19339 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045701.label Connecting and filling vertices in path at fillseed 94637 Finding path................................................................................................................ done Filling 94637 nlabel 3764 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045801.label Connecting and filling vertices in path at fillseed 95047 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 95047 nlabel 8021 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045901.label Connecting and filling vertices in path at fillseed 94243 Finding path...................................................................................................................................................................................................................................................................... done Filling 94243 nlabel 9454 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046001.label Connecting and filling vertices in path at fillseed 90706 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 90706 nlabel 18821 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046101.label Connecting and filling vertices in path at fillseed 91970 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91970 nlabel 13607 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046201.label Connecting and filling vertices in path at fillseed 96097 Finding path........................................................................................................................................................................................................................................ done Filling 96097 nlabel 5106 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046301.label Connecting and filling vertices in path at fillseed 130450 Finding path................................................................................................................................................................................. done Filling 130450 nlabel 6727 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046401.label Connecting and filling vertices in path at fillseed 94324 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 94324 nlabel 9792 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046501.label Connecting and filling vertices in path at fillseed 144188 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 144188 nlabel 18990 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046601.label Connecting and filling vertices in path at fillseed 94433 Finding path................................................................................................................................................... done Filling 94433 nlabel 5223 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046701.label Connecting and filling vertices in path at fillseed 92961 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 92961 nlabel 8507 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046801.label Connecting and filling vertices in path at fillseed 98557 Finding path............................................................................................................................... done Filling 98557 nlabel 3781 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046901.label Connecting and filling vertices in path at fillseed 94164 Finding path..................................................................................................................... done Filling 94164 nlabel 4490 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047001.label Connecting and filling vertices in path at fillseed 129785 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129785 nlabel 16394 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047101.label Connecting and filling vertices in path at fillseed 97794 Finding path.............................................................................................................................. done Filling 97794 nlabel 4460 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047201.label Connecting and filling vertices in path at fillseed 95989 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 95989 nlabel 8143 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047301.label Connecting and filling vertices in path at fillseed 154678 Finding path............................................................................................................... done Filling 154678 nlabel 4649 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047401.label Connecting and filling vertices in path at fillseed 99537 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 99537 nlabel 9079 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047501.label Connecting and filling vertices in path at fillseed 98568 Finding path..................................................................................................... done Filling 98568 nlabel 4177 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047601.label Connecting and filling vertices in path at fillseed 97182 Finding path....................................................................................................................................................... done Filling 97182 nlabel 5431 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047701.label Connecting and filling vertices in path at fillseed 96811 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 96811 nlabel 8108 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047801.label Connecting and filling vertices in path at fillseed 95224 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 95224 nlabel 10207 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047901.label Connecting and filling vertices in path at fillseed 96887 Finding path............................................................................................................................................... done Filling 96887 nlabel 4903 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048001.label Connecting and filling vertices in path at fillseed 94613 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 94613 nlabel 15675 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048101.label Connecting and filling vertices in path at fillseed 128154 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 128154 nlabel 6567 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048201.label Connecting and filling vertices in path at fillseed 97622 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 97622 nlabel 7037 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048301.label Connecting and filling vertices in path at fillseed 99307 Finding path........................................................................................................................................... done Filling 99307 nlabel 4826 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048401.label Connecting and filling vertices in path at fillseed 136267 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 136267 nlabel 15672 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048501.label Connecting and filling vertices in path at fillseed 128294 Finding path.................................................................................................................................................................................................................................................................................................. done Filling 128294 nlabel 5069 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048601.label Connecting and filling vertices in path at fillseed 99836 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 99836 nlabel 7140 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048701.label Connecting and filling vertices in path at fillseed 100991 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 100991 nlabel 3711 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048801.label Connecting and filling vertices in path at fillseed 97752 Finding path..................................................................................................... done Filling 97752 nlabel 4464 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048901.label Connecting and filling vertices in path at fillseed 101275 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 101275 nlabel 13040 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049001.label Connecting and filling vertices in path at fillseed 99824 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99824 nlabel 6747 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049101.label Connecting and filling vertices in path at fillseed 146308 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 146308 nlabel 7280 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049201.label Connecting and filling vertices in path at fillseed 99167 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99167 nlabel 7086 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049301.label Connecting and filling vertices in path at fillseed 99296 Finding path........................................................................................................................... done Filling 99296 nlabel 4630 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049401.label Connecting and filling vertices in path at fillseed 136259 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 136259 nlabel 15170 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049501.label Connecting and filling vertices in path at fillseed 99154 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99154 nlabel 6343 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049601.label Connecting and filling vertices in path at fillseed 101295 Finding path............................................................................................................................ done Filling 101295 nlabel 5239 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049701.label Connecting and filling vertices in path at fillseed 128086 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 128086 nlabel 7192 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049801.label Connecting and filling vertices in path at fillseed 97849 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 97849 nlabel 10899 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049901.label Connecting and filling vertices in path at fillseed 136259 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 136259 nlabel 15003 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050001.label Connecting and filling vertices in path at fillseed 133846 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 133846 nlabel 14340 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050101.label Connecting and filling vertices in path at fillseed 102071 Finding path......................................................................................................................................................................... done Filling 102071 nlabel 5245 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050201.label Connecting and filling vertices in path at fillseed 104989 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 104989 nlabel 7321 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050301.label Connecting and filling vertices in path at fillseed 100997 Finding path.................................................................................................................................................................................................................................. done Filling 100997 nlabel 7323 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050401.label Connecting and filling vertices in path at fillseed 96517 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 96517 nlabel 14840 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050501.label Connecting and filling vertices in path at fillseed 99096 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99096 nlabel 14290 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050601.label Connecting and filling vertices in path at fillseed 101451 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 101451 nlabel 5252 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050701.label Connecting and filling vertices in path at fillseed 103064 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103064 nlabel 6410 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050801.label Connecting and filling vertices in path at fillseed 102533 Finding path...................................................................................................................................................................................................................................................................................................................... done Filling 102533 nlabel 10455 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050901.label Connecting and filling vertices in path at fillseed 101217 Finding path........................................................................................................................................................................................................................................................................... done Filling 101217 nlabel 8381 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051001.label Connecting and filling vertices in path at fillseed 102477 Finding path......................................................................................................................................................................................................... done Filling 102477 nlabel 5369 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051101.label Connecting and filling vertices in path at fillseed 140174 Finding path........................................................................................................................................................................................................................... done Filling 140174 nlabel 5124 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051201.label Connecting and filling vertices in path at fillseed 141830 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 141830 nlabel 4611 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051301.label Connecting and filling vertices in path at fillseed 100965 Finding path................................................................................................................................................. done Filling 100965 nlabel 4666 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051401.label Connecting and filling vertices in path at fillseed 135090 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 135090 nlabel 4914 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051501.label Connecting and filling vertices in path at fillseed 104998 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 104998 nlabel 5254 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051601.label Connecting and filling vertices in path at fillseed 153473 Finding path.................................................................................................................................................................................................... done Filling 153473 nlabel 5564 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051701.label Connecting and filling vertices in path at fillseed 102451 Finding path............................................................................................................... done Filling 102451 nlabel 3128 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051801.label Connecting and filling vertices in path at fillseed 102144 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 102144 nlabel 15564 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051901.label Connecting and filling vertices in path at fillseed 134538 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 134538 nlabel 13767 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052001.label Connecting and filling vertices in path at fillseed 128040 Finding path................................................................................................................................................................................................................ done Filling 128040 nlabel 4530 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052101.label Connecting and filling vertices in path at fillseed 105183 Finding path................................................................................................................................................................................................................ done Filling 105183 nlabel 6688 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052201.label Connecting and filling vertices in path at fillseed 103903 Finding path....................................................................................................................................................................................................................................................................................... done Filling 103903 nlabel 9628 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052301.label Connecting and filling vertices in path at fillseed 101510 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 101510 nlabel 14756 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052401.label Connecting and filling vertices in path at fillseed 102329 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 102329 nlabel 13027 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052501.label Connecting and filling vertices in path at fillseed 104822 Finding path........................................................................................................ done Filling 104822 nlabel 4941 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052601.label Connecting and filling vertices in path at fillseed 103847 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 103847 nlabel 3466 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052701.label Connecting and filling vertices in path at fillseed 133998 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 133998 nlabel 4490 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052801.label Connecting and filling vertices in path at fillseed 103678 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103678 nlabel 14273 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052901.label Connecting and filling vertices in path at fillseed 101594 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 101594 nlabel 10777 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053001.label Connecting and filling vertices in path at fillseed 105595 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 105595 nlabel 5202 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053101.label Connecting and filling vertices in path at fillseed 105132 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105132 nlabel 6177 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053201.label Connecting and filling vertices in path at fillseed 103958 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 103958 nlabel 11060 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053301.label Connecting and filling vertices in path at fillseed 104389 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 104389 nlabel 13868 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053401.label Connecting and filling vertices in path at fillseed 106132 Finding path...................................................................................................................................... done Filling 106132 nlabel 5231 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053501.label Connecting and filling vertices in path at fillseed 106548 Finding path..................................................................................................................................................................................................................... done Filling 106548 nlabel 5908 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053601.label Connecting and filling vertices in path at fillseed 105285 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 105285 nlabel 9014 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053701.label Connecting and filling vertices in path at fillseed 104380 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 104380 nlabel 14389 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053801.label Connecting and filling vertices in path at fillseed 106801 Finding path....................................................................................................................... done Filling 106801 nlabel 4928 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053901.label Connecting and filling vertices in path at fillseed 135788 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 135788 nlabel 6318 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054001.label Connecting and filling vertices in path at fillseed 106527 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 106527 nlabel 3769 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054101.label Connecting and filling vertices in path at fillseed 105122 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105122 nlabel 5689 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054201.label Connecting and filling vertices in path at fillseed 131514 Finding path....................................................................................................................................................................................................................... done Filling 131514 nlabel 5081 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054301.label Connecting and filling vertices in path at fillseed 107264 Finding path........................................................................................................................................................................................ done Filling 107264 nlabel 5906 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054401.label Connecting and filling vertices in path at fillseed 105851 Finding path............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 105851 nlabel 3165 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054501.label Connecting and filling vertices in path at fillseed 106726 Finding path....................................................................................................................................................................................................................................................................................... done Filling 106726 nlabel 10134 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054601.label Connecting and filling vertices in path at fillseed 106886 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106886 nlabel 12357 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054701.label Connecting and filling vertices in path at fillseed 108034 Finding path................................................................................................................................................................................. done Filling 108034 nlabel 4029 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054801.label Connecting and filling vertices in path at fillseed 105167 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 105167 nlabel 4113 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054901.label Connecting and filling vertices in path at fillseed 107232 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 107232 nlabel 4754 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055001.label Connecting and filling vertices in path at fillseed 109196 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 109196 nlabel 13614 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055101.label Connecting and filling vertices in path at fillseed 110725 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110725 nlabel 5096 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055201.label Connecting and filling vertices in path at fillseed 108650 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108650 nlabel 6452 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055301.label Connecting and filling vertices in path at fillseed 140217 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 140217 nlabel 3844 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055401.label Connecting and filling vertices in path at fillseed 130720 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 130720 nlabel 9101 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055501.label Connecting and filling vertices in path at fillseed 109721 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 109721 nlabel 10303 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055601.label Connecting and filling vertices in path at fillseed 134848 Finding path................................................................................................................................................................................................................... done Filling 134848 nlabel 6173 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055701.label Connecting and filling vertices in path at fillseed 110166 Finding path....................................................................................................................................................................................................................................................................................... done Filling 110166 nlabel 6493 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055801.label Connecting and filling vertices in path at fillseed 109518 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 109518 nlabel 8678 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055901.label Connecting and filling vertices in path at fillseed 107959 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107959 nlabel 5117 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056001.label Connecting and filling vertices in path at fillseed 110603 Finding path............................................................................................................................................................................................... done Filling 110603 nlabel 5540 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056101.label Connecting and filling vertices in path at fillseed 109463 Finding path............................................................................................................................................................................................................................... done Filling 109463 nlabel 4260 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056201.label Connecting and filling vertices in path at fillseed 107220 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 107220 nlabel 5052 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056301.label Connecting and filling vertices in path at fillseed 107990 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 107990 nlabel 4552 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056401.label Connecting and filling vertices in path at fillseed 107929 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 107929 nlabel 9683 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056501.label Connecting and filling vertices in path at fillseed 144478 Finding path........................................................................................................................................................................................................................................... done Filling 144478 nlabel 4800 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056601.label Connecting and filling vertices in path at fillseed 110782 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110782 nlabel 7541 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056701.label Connecting and filling vertices in path at fillseed 108011 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108011 nlabel 4482 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056801.label Connecting and filling vertices in path at fillseed 108681 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108681 nlabel 8921 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056901.label Connecting and filling vertices in path at fillseed 110410 Finding path...................................................................................................................................................................... done Filling 110410 nlabel 6027 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057001.label Connecting and filling vertices in path at fillseed 112746 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112746 nlabel 7206 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057101.label Connecting and filling vertices in path at fillseed 129726 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129726 nlabel 4608 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057201.label Connecting and filling vertices in path at fillseed 109453 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 109453 nlabel 6352 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057301.label Connecting and filling vertices in path at fillseed 112413 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 112413 nlabel 8994 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057401.label Connecting and filling vertices in path at fillseed 115440 Finding path.......................................................................................................................................................................... done Filling 115440 nlabel 5828 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057501.label Connecting and filling vertices in path at fillseed 112786 Finding path......................................................................................................................................................................................................................... done Filling 112786 nlabel 7393 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057601.label Connecting and filling vertices in path at fillseed 108019 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 108019 nlabel 4043 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057701.label Connecting and filling vertices in path at fillseed 144963 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 144963 nlabel 11165 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057801.label Connecting and filling vertices in path at fillseed 151621 Finding path........................................................................................................................................................................... done Filling 151621 nlabel 5424 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057901.label Connecting and filling vertices in path at fillseed 112731 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 112731 nlabel 6101 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058001.label Connecting and filling vertices in path at fillseed 107969 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107969 nlabel 6706 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058101.label Connecting and filling vertices in path at fillseed 109441 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 109441 nlabel 5719 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058201.label Connecting and filling vertices in path at fillseed 111723 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111723 nlabel 8354 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058301.label Connecting and filling vertices in path at fillseed 112416 Finding path............................................................................................................... done Filling 112416 nlabel 5727 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058401.label Connecting and filling vertices in path at fillseed 112776 Finding path................................................................................................................................................................................................................... done Filling 112776 nlabel 6746 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058501.label Connecting and filling vertices in path at fillseed 111508 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 111508 nlabel 9180 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058601.label Connecting and filling vertices in path at fillseed 115529 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 115529 nlabel 11509 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058701.label Connecting and filling vertices in path at fillseed 113001 Finding path................................................................................................................................................................... done Filling 113001 nlabel 5522 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058801.label Connecting and filling vertices in path at fillseed 135395 Finding path.................................................................................................................................................................................. done Filling 135395 nlabel 5372 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058901.label Connecting and filling vertices in path at fillseed 108694 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108694 nlabel 6749 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059001.label Connecting and filling vertices in path at fillseed 114311 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114311 nlabel 9224 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059101.label Connecting and filling vertices in path at fillseed 115982 Finding path.................................................................................................................................................... done Filling 115982 nlabel 5755 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059201.label Connecting and filling vertices in path at fillseed 149014 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 149014 nlabel 6575 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059301.label Connecting and filling vertices in path at fillseed 110131 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110131 nlabel 7712 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059401.label Connecting and filling vertices in path at fillseed 111458 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 111458 nlabel 6468 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059501.label Connecting and filling vertices in path at fillseed 129441 Finding path...................................................................................................................................................................... done Filling 129441 nlabel 5886 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059601.label Connecting and filling vertices in path at fillseed 133297 Finding path.................................................................................................................................................. done Filling 133297 nlabel 4790 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059701.label Connecting and filling vertices in path at fillseed 113305 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113305 nlabel 6788 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059801.label Connecting and filling vertices in path at fillseed 115007 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 115007 nlabel 10365 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059901.label Connecting and filling vertices in path at fillseed 137906 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 137906 nlabel 7622 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060001.label Connecting and filling vertices in path at fillseed 116343 Finding path............................................................................................................. done Filling 116343 nlabel 5715 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060101.label Connecting and filling vertices in path at fillseed 115655 Finding path..................................................................................................................................................................................... done Filling 115655 nlabel 5276 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060201.label Connecting and filling vertices in path at fillseed 149630 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 149630 nlabel 8149 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060301.label Connecting and filling vertices in path at fillseed 115961 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 115961 nlabel 10219 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060401.label Connecting and filling vertices in path at fillseed 116693 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 116693 nlabel 6159 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060501.label Connecting and filling vertices in path at fillseed 131053 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 131053 nlabel 9415 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060601.label Connecting and filling vertices in path at fillseed 117268 Finding path........................................................................................................................................................................ done Filling 117268 nlabel 5519 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060701.label Connecting and filling vertices in path at fillseed 117763 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 117763 nlabel 6134 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060801.label Connecting and filling vertices in path at fillseed 117279 Finding path.............................................................................................................................................................................................................................................. done Filling 117279 nlabel 7837 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060901.label Connecting and filling vertices in path at fillseed 117675 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 117675 nlabel 10585 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061001.label Connecting and filling vertices in path at fillseed 117542 Finding path..................................................................................................................................................................................... done Filling 117542 nlabel 5618 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061101.label Connecting and filling vertices in path at fillseed 116689 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 116689 nlabel 7099 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061201.label Connecting and filling vertices in path at fillseed 116417 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 116417 nlabel 7387 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061301.label Connecting and filling vertices in path at fillseed 140677 Finding path........................................................................................................................................................... done Filling 140677 nlabel 5796 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061401.label Connecting and filling vertices in path at fillseed 116199 Finding path................................................................................................................................................................................................................................ done Filling 116199 nlabel 7111 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061501.label Connecting and filling vertices in path at fillseed 117150 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 117150 nlabel 8767 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061601.label Connecting and filling vertices in path at fillseed 117007 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 117007 nlabel 10066 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061701.label Connecting and filling vertices in path at fillseed 146825 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 146825 nlabel 4989 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061801.label Connecting and filling vertices in path at fillseed 117255 Finding path............................................................................................................................................................................................................ done Filling 117255 nlabel 7677 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061901.label Connecting and filling vertices in path at fillseed 120010 Finding path......................................................................................................................................................................... done Filling 120010 nlabel 6900 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062001.label Connecting and filling vertices in path at fillseed 118800 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 118800 nlabel 4884 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062101.label Connecting and filling vertices in path at fillseed 147225 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 147225 nlabel 7436 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062201.label Connecting and filling vertices in path at fillseed 118433 Finding path.............................................................................................................................................................................. done Filling 118433 nlabel 7824 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062301.label Connecting and filling vertices in path at fillseed 117516 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 117516 nlabel 8808 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062401.label Connecting and filling vertices in path at fillseed 148625 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 148625 nlabel 5037 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062501.label Connecting and filling vertices in path at fillseed 118876 Finding path................................................................................................................................................................................................... done Filling 118876 nlabel 7044 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062601.label Connecting and filling vertices in path at fillseed 118184 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 118184 nlabel 8820 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062701.label Connecting and filling vertices in path at fillseed 120259 Finding path...................................................................................................................................... done Filling 120259 nlabel 5079 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062801.label Connecting and filling vertices in path at fillseed 119821 Finding path........................................................................................................................................................................................ done Filling 119821 nlabel 6627 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062901.label Connecting and filling vertices in path at fillseed 130518 Finding path................................................................................................................................................................................................................................................................................................ done Filling 130518 nlabel 6477 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063001.label Connecting and filling vertices in path at fillseed 134900 Finding path..................................................................................................................................................... done Filling 134900 nlabel 5422 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063101.label Connecting and filling vertices in path at fillseed 135425 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 135425 nlabel 7341 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063201.label Connecting and filling vertices in path at fillseed 121487 Finding path.................................................................................................................................................................................... done Filling 121487 nlabel 6923 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063301.label Connecting and filling vertices in path at fillseed 119313 Finding path..................................................................................................................................................... done Filling 119313 nlabel 5504 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063401.label Connecting and filling vertices in path at fillseed 121242 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121242 nlabel 6990 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063501.label Connecting and filling vertices in path at fillseed 142500 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 142500 nlabel 6134 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063601.label Connecting and filling vertices in path at fillseed 121790 Finding path.............................................................................................................................................................. done Filling 121790 nlabel 5819 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063701.label Connecting and filling vertices in path at fillseed 141930 Finding path.......................................................................................................................... done Filling 141930 nlabel 4116 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063801.label Connecting and filling vertices in path at fillseed 120705 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 120705 nlabel 6491 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063901.label Connecting and filling vertices in path at fillseed 120348 Finding path............................................................................................................................ done Filling 120348 nlabel 5722 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.064001.label Connecting and filling vertices in path at fillseed 119790 Finding path.................................................................................................................................................................................... done Filling 119790 nlabel 4690 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.064101.label Connecting and filling vertices in path at fillseed 121856 Finding path..................................................................................................................................................................... done Filling 121856 nlabel 8312 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.064201.label Connecting and filling vertices in path at fillseed 122146 Finding path......................................................................................................................................... done Filling 122146 nlabel 4366 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.064301.label Connecting and filling vertices in path at fillseed 121244 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121244 nlabel 6111 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.064401.label Connecting and filling vertices in path at fillseed 121846 Finding path.................................................................................................................................................................................................. done Filling 121846 nlabel 8068 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.064501.label Connecting and filling vertices in path at fillseed 122644 Finding path.............................................................................................................................................. done Filling 122644 nlabel 5625 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.064601.label Connecting and filling vertices in path at fillseed 122162 Finding path....................................................................................................................... done Filling 122162 nlabel 4621 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.064701.label Connecting and filling vertices in path at fillseed 154892 Finding path............................................................................................................................................................................................ done Filling 154892 nlabel 6813 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.064801.label Connecting and filling vertices in path at fillseed 121677 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121677 nlabel 6342 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.064901.label Connecting and filling vertices in path at fillseed 123083 Finding path.............................................................................................................. done Filling 123083 nlabel 4145 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.065001.label Connecting and filling vertices in path at fillseed 123036 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 123036 nlabel 7419 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.065101.label Connecting and filling vertices in path at fillseed 147864 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 147864 nlabel 6570 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.065201.label Connecting and filling vertices in path at fillseed 124360 Finding path................................................................................................................................................. done Filling 124360 nlabel 5412 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.065301.label Connecting and filling vertices in path at fillseed 149322 Finding path.............................................................................................................................................................................. done Filling 149322 nlabel 6379 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.065401.label Connecting and filling vertices in path at fillseed 122562 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 122562 nlabel 6688 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.065501.label Connecting and filling vertices in path at fillseed 123047 Finding path............................................................................................................................................................... done Filling 123047 nlabel 3765 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.065601.label Connecting and filling vertices in path at fillseed 123472 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 123472 nlabel 6561 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.065701.label Connecting and filling vertices in path at fillseed 123223 Finding path............................................................................................................................................................................. done Filling 123223 nlabel 7285 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.065801.label Connecting and filling vertices in path at fillseed 124998 Finding path...................................................................................................................................... done Filling 124998 nlabel 5296 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.065901.label Connecting and filling vertices in path at fillseed 123066 Finding path............................................................................................................................................................................................ done Filling 123066 nlabel 5369 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.066001.label Connecting and filling vertices in path at fillseed 123652 Finding path..................................................................................................................................................................................................................................................... done Filling 123652 nlabel 7669 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.066101.label Connecting and filling vertices in path at fillseed 125006 Finding path....................................................................................................................................... done Filling 125006 nlabel 5351 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.066201.label Connecting and filling vertices in path at fillseed 124853 Finding path............................................................................................................................................................... done Filling 124853 nlabel 5652 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.066301.label Connecting and filling vertices in path at fillseed 124819 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 124819 nlabel 7113 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.066401.label Connecting and filling vertices in path at fillseed 124424 Finding path............................................................................................................................ done Filling 124424 nlabel 3845 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.066501.label Connecting and filling vertices in path at fillseed 124847 Finding path.............................................................................................................................................................................................................. done Filling 124847 nlabel 5760 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.066601.label Connecting and filling vertices in path at fillseed 124129 Finding path..................................................................................................................................................................... done Filling 124129 nlabel 6942 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.066701.label Connecting and filling vertices in path at fillseed 124908 Finding path....................................................................................................................................................................... done Filling 124908 nlabel 5284 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.066801.label Connecting and filling vertices in path at fillseed 124830 Finding path....................................................................................................................................................................... done Filling 124830 nlabel 6362 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.066901.label Connecting and filling vertices in path at fillseed 124674 Finding path................................................................................................................................... done Filling 124674 nlabel 6306 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.067001.label Connecting and filling vertices in path at fillseed 125988 Finding path......................................................................................................................................................... done Filling 125988 nlabel 4017 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.067101.label Connecting and filling vertices in path at fillseed 124525 Finding path......................................................................................................................................................................................................... done Filling 124525 nlabel 7456 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.067201.label Connecting and filling vertices in path at fillseed 126580 Finding path.................................................................................................................................................... done Filling 126580 nlabel 4798 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.067301.label Connecting and filling vertices in path at fillseed 125316 Finding path.................................................................................................................................................................................................... done Filling 125316 nlabel 5501 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.067401.label Connecting and filling vertices in path at fillseed 125720 Finding path................................................................................................................................................................................ done Filling 125720 nlabel 7879 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.067501.label Connecting and filling vertices in path at fillseed 125226 Finding path......................................................................................................................................................................................................... done Filling 125226 nlabel 5790 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.067601.label Connecting and filling vertices in path at fillseed 125991 Finding path........................................................................................................................................................ done Filling 125991 nlabel 4333 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.067701.label Connecting and filling vertices in path at fillseed 130022 Finding path.............................................................................................................................................................. done Filling 130022 nlabel 5991 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.067801.label Connecting and filling vertices in path at fillseed 125173 Finding path................................................................................................................................................................................. done Filling 125173 nlabel 5577 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.067901.label Connecting and filling vertices in path at fillseed 126283 Finding path........................................................................................................................................... done Filling 126283 nlabel 4095 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.068001.label Connecting and filling vertices in path at fillseed 125358 Finding path...................................................................................................................................................... done Filling 125358 nlabel 5659 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.068101.label Connecting and filling vertices in path at fillseed 126248 Finding path...................................................................................................................................................................................... done Filling 126248 nlabel 5781 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.068201.label Connecting and filling vertices in path at fillseed 125995 Finding path............................................................................................................................................................................................ done Filling 125995 nlabel 5386 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.068301.label Connecting and filling vertices in path at fillseed 150808 Finding path................................................................................................................................................................................................ done Filling 150808 nlabel 6178 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.068401.label Connecting and filling vertices in path at fillseed 127082 Finding path......................................................................................................................... done Filling 127082 nlabel 3730 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.068501.label Connecting and filling vertices in path at fillseed 126299 Finding path..................................................................................................................................................................... done Filling 126299 nlabel 5760 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.068601.label Connecting and filling vertices in path at fillseed 126543 Finding path................................................................................................................................................. done Filling 126543 nlabel 5424 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.068701.label Connecting and filling vertices in path at fillseed 127304 Finding path........................................................................................................................................................... done Filling 127304 nlabel 4736 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.068801.label Connecting and filling vertices in path at fillseed 127264 Finding path................................................................................................................................................................................................ done Filling 127264 nlabel 5744 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.068901.label Connecting and filling vertices in path at fillseed 126130 Finding path.............................................................................................................................................................................................................................................................................. done Filling 126130 nlabel 5605 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.069001.label Connecting and filling vertices in path at fillseed 127282 Finding path.......................................................................................................................... done Filling 127282 nlabel 3685 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.069101.label Connecting and filling vertices in path at fillseed 127245 Finding path............................................................................................................................ done Filling 127245 nlabel 4796 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.069201.label Connecting and filling vertices in path at fillseed 126999 Finding path........................................................................................................................................... done Filling 126999 nlabel 4695 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.069301.label Connecting and filling vertices in path at fillseed 127272 Finding path................................................................................................................................................................................ done Filling 127272 nlabel 4684 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.069401.label Connecting and filling vertices in path at fillseed 127313 Finding path........................................................................................................... done Filling 127313 nlabel 4887 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.069501.label Connecting and filling vertices in path at fillseed 127513 Finding path...................................................................................................... done Filling 127513 nlabel 4103 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.069601.label Connecting and filling vertices in path at fillseed 127306 Finding path.............................................................................................................................................................. done Filling 127306 nlabel 6324 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.069701.label Connecting and filling vertices in path at fillseed 127605 Finding path........................................................................................................................ done Filling 127605 nlabel 3269 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.069801.label Connecting and filling vertices in path at fillseed 127322 Finding path................................................................................................................................................... done Filling 127322 nlabel 4877 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.069901.label Connecting and filling vertices in path at fillseed 127629 Finding path........................................................................................................................................... done Filling 127629 nlabel 4815 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.070001.label Connecting and filling vertices in path at fillseed 127708 Finding path....................................................................................................................................................... done Filling 127708 nlabel 4622 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.070101.label Connecting and filling vertices in path at fillseed 127632 Finding path.......................................................................................................................................... done Filling 127632 nlabel 4857 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.070201.label Connecting and filling vertices in path at fillseed 127812 Finding path....................................................................................................................................................................... done Filling 127812 nlabel 4919 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.070301.label Connecting and filling vertices in path at fillseed 127751 Finding path......................................................................................................................................... done Filling 127751 nlabel 4885 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.070401.label Connecting and filling vertices in path at fillseed 127488 Finding path............................................................................................................................................................... done Filling 127488 nlabel 5151 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.070501.label Connecting and filling vertices in path at fillseed 127774 Finding path........................................................................................................................................ done Filling 127774 nlabel 4723 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.070601.label Connecting and filling vertices in path at fillseed 127657 Finding path................................................................................................................................................................... done Filling 127657 nlabel 4961 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.070701.label Connecting and filling vertices in path at fillseed 127893 Finding path........................................................................................................................................................... done Filling 127893 nlabel 4706 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.070801.label ================= compute_lgi('lh.pial','lh.pial-outer-smoothed','/scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc',100,25,'/scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.40 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 141604 face 10000 / 141604 face 15000 / 141604 face 20000 / 141604 face 25000 / 141604 face 30000 / 141604 face 35000 / 141604 face 40000 / 141604 face 45000 / 141604 face 50000 / 141604 face 55000 / 141604 face 60000 / 141604 face 65000 / 141604 face 70000 / 141604 face 75000 / 141604 face 80000 / 141604 face 85000 / 141604 face 90000 / 141604 face 95000 / 141604 face 100000 / 141604 face 105000 / 141604 face 110000 / 141604 face 115000 / 141604 face 120000 / 141604 face 125000 / 141604 face 130000 / 141604 face 135000 / 141604 face 140000 / 141604 reading normals info ... mesh_outer = struct with fields: vertices: [70804x3 double] faces: [141604x3 double] facesOfVertex: [70804x1 struct] vertexNormal: [70804x3 double] preparing pial mesh structure ... face 5000 / 311770 face 10000 / 311770 face 15000 / 311770 face 20000 / 311770 face 25000 / 311770 face 30000 / 311770 face 35000 / 311770 face 40000 / 311770 face 45000 / 311770 face 50000 / 311770 face 55000 / 311770 face 60000 / 311770 face 65000 / 311770 face 70000 / 311770 face 75000 / 311770 face 80000 / 311770 face 85000 / 311770 face 90000 / 311770 face 95000 / 311770 face 100000 / 311770 face 105000 / 311770 face 110000 / 311770 face 115000 / 311770 face 120000 / 311770 face 125000 / 311770 face 130000 / 311770 face 135000 / 311770 face 140000 / 311770 face 145000 / 311770 face 150000 / 311770 face 155000 / 311770 face 160000 / 311770 face 165000 / 311770 face 170000 / 311770 face 175000 / 311770 face 180000 / 311770 face 185000 / 311770 face 190000 / 311770 face 195000 / 311770 face 200000 / 311770 face 205000 / 311770 face 210000 / 311770 face 215000 / 311770 face 220000 / 311770 face 225000 / 311770 face 230000 / 311770 face 235000 / 311770 face 240000 / 311770 face 245000 / 311770 face 250000 / 311770 face 255000 / 311770 face 260000 / 311770 face 265000 / 311770 face 270000 / 311770 face 275000 / 311770 face 280000 / 311770 face 285000 / 311770 face 290000 / 311770 face 295000 / 311770 face 300000 / 311770 face 305000 / 311770 face 310000 / 311770 mesh_total = struct with fields: vertices: [155887x3 double] faces: [311770x3 double] facesOfVertex: [155887x1 struct] ...searching for mesh edges...done (212.20 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 2.3533 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 3.2525 lGI for vertex number 201 of the outer mesh is 2.3044 lGI for vertex number 301 of the outer mesh is 2.7208 lGI for vertex number 401 of the outer mesh is 3.2068 lGI for vertex number 501 of the outer mesh is 2.9013 lGI for vertex number 601 of the outer mesh is 2.1483 lGI for vertex number 701 of the outer mesh is 2.2368 lGI for vertex number 801 of the outer mesh is 2.7841 lGI for vertex number 901 of the outer mesh is 2.2548 lGI for vertex number 1001 of the outer mesh is 3.5176 lGI for vertex number 1101 of the outer mesh is 3.3589 lGI for vertex number 1201 of the outer mesh is 2.1211 lGI for vertex number 1301 of the outer mesh is 3.5935 lGI for vertex number 1401 of the outer mesh is 3.8023 lGI for vertex number 1501 of the outer mesh is 2.6942 lGI for vertex number 1601 of the outer mesh is 2.1809 lGI for vertex number 1701 of the outer mesh is 3.1326 lGI for vertex number 1801 of the outer mesh is 3.9092 lGI for vertex number 1901 of the outer mesh is 3.2269 lGI for vertex number 2001 of the outer mesh is 2.9871 lGI for vertex number 2101 of the outer mesh is 2.3427 lGI for vertex number 2201 of the outer mesh is 3.2181 lGI for vertex number 2301 of the outer mesh is 2.8987 lGI for vertex number 2401 of the outer mesh is 2.2246 lGI for vertex number 2501 of the outer mesh is 3.0276 lGI for vertex number 2601 of the outer mesh is 3.3068 lGI for vertex number 2701 of the outer mesh is 2.2157 lGI for vertex number 2801 of the outer mesh is 3.049 lGI for vertex number 2901 of the outer mesh is 3.4521 lGI for vertex number 3001 of the outer mesh is 3.8648 lGI for vertex number 3101 of the outer mesh is 3.9359 lGI for vertex number 3201 of the outer mesh is 2.6314 lGI for vertex number 3301 of the outer mesh is 2.3064 lGI for vertex number 3401 of the outer mesh is 4.0306 lGI for vertex number 3501 of the outer mesh is 3.4201 lGI for vertex number 3601 of the outer mesh is 3.1657 lGI for vertex number 3701 of the outer mesh is 3.4759 lGI for vertex number 3801 of the outer mesh is 2.716 lGI for vertex number 3901 of the outer mesh is 3.3339 lGI for vertex number 4001 of the outer mesh is 3.1677 lGI for vertex number 4101 of the outer mesh is 3.8873 lGI for vertex number 4201 of the outer mesh is 3.4457 lGI for vertex number 4301 of the outer mesh is 3.1917 lGI for vertex number 4401 of the outer mesh is 2.3506 lGI for vertex number 4501 of the outer mesh is 2.5296 lGI for vertex number 4601 of the outer mesh is 3.5558 lGI for vertex number 4701 of the outer mesh is 2.2927 lGI for vertex number 4801 of the outer mesh is 2.3241 lGI for vertex number 4901 of the outer mesh is 4.1515 lGI for vertex number 5001 of the outer mesh is 3.4423 lGI for vertex number 5101 of the outer mesh is 3.5816 lGI for vertex number 5201 of the outer mesh is 2.1584 lGI for vertex number 5301 of the outer mesh is 2.7238 lGI for vertex number 5401 of the outer mesh is 3.3069 lGI for vertex number 5501 of the outer mesh is 3.3018 lGI for vertex number 5601 of the outer mesh is 2.4921 lGI for vertex number 5701 of the outer mesh is 2.8748 lGI for vertex number 5801 of the outer mesh is 2.4476 lGI for vertex number 5901 of the outer mesh is 3.1075 lGI for vertex number 6001 of the outer mesh is 2.4753 lGI for vertex number 6101 of the outer mesh is 3.6568 lGI for vertex number 6201 of the outer mesh is 2.204 lGI for vertex number 6301 of the outer mesh is 3.2277 lGI for vertex number 6401 of the outer mesh is 2.4699 lGI for vertex number 6501 of the outer mesh is 3.7945 lGI for vertex number 6601 of the outer mesh is 2.125 lGI for vertex number 6701 of the outer mesh is 3.3269 lGI for vertex number 6801 of the outer mesh is 3.8687 lGI for vertex number 6901 of the outer mesh is 4.0954 lGI for vertex number 7001 of the outer mesh is 3.5864 lGI for vertex number 7101 of the outer mesh is 3.6171 lGI for vertex number 7201 of the outer mesh is 2.944 lGI for vertex number 7301 of the outer mesh is 4.016 lGI for vertex number 7401 of the outer mesh is 3.6271 lGI for vertex number 7501 of the outer mesh is 2.4248 lGI for vertex number 7601 of the outer mesh is 2.4767 lGI for vertex number 7701 of the outer mesh is 2.525 lGI for vertex number 7801 of the outer mesh is 3.6817 lGI for vertex number 7901 of the outer mesh is 3.7387 lGI for vertex number 8001 of the outer mesh is 2.5285 lGI for vertex number 8101 of the outer mesh is 2.4798 lGI for vertex number 8201 of the outer mesh is 4.1987 lGI for vertex number 8301 of the outer mesh is 3.7676 lGI for vertex number 8401 of the outer mesh is 3.9209 lGI for vertex number 8501 of the outer mesh is 2.7562 lGI for vertex number 8601 of the outer mesh is 2.5349 lGI for vertex number 8701 of the outer mesh is 3.5302 lGI for vertex number 8801 of the outer mesh is 2.981 lGI for vertex number 8901 of the outer mesh is 2.6931 lGI for vertex number 9001 of the outer mesh is 3.6273 lGI for vertex number 9101 of the outer mesh is 3.1014 lGI for vertex number 9201 of the outer mesh is 3.7108 lGI for vertex number 9301 of the outer mesh is 2.5849 lGI for vertex number 9401 of the outer mesh is 3.2968 lGI for vertex number 9501 of the outer mesh is 4.2657 lGI for vertex number 9601 of the outer mesh is 3.8482 lGI for vertex number 9701 of the outer mesh is 3.9448 lGI for vertex number 9801 of the outer mesh is 2.5465 lGI for vertex number 9901 of the outer mesh is 4.1381 lGI for vertex number 10001 of the outer mesh is 3.2833 ratio saved at 10001 lGI for vertex number 10101 of the outer mesh is 3.118 lGI for vertex number 10201 of the outer mesh is 3.0426 lGI for vertex number 10301 of the outer mesh is 2.7078 lGI for vertex number 10401 of the outer mesh is 3.4394 lGI for vertex number 10501 of the outer mesh is 4.8267 lGI for vertex number 10601 of the outer mesh is 3.9905 lGI for vertex number 10701 of the outer mesh is 2.7947 lGI for vertex number 10801 of the outer mesh is 2.5626 lGI for vertex number 10901 of the outer mesh is 4.127 lGI for vertex number 11001 of the outer mesh is 3.9961 lGI for vertex number 11101 of the outer mesh is 3.1302 lGI for vertex number 11201 of the outer mesh is 2.5752 lGI for vertex number 11301 of the outer mesh is 3.9765 lGI for vertex number 11401 of the outer mesh is 3.3155 lGI for vertex number 11501 of the outer mesh is 3.3051 lGI for vertex number 11601 of the outer mesh is 3.6199 lGI for vertex number 11701 of the outer mesh is 4.5377 lGI for vertex number 11801 of the outer mesh is 4.3119 lGI for vertex number 11901 of the outer mesh is 2.5035 lGI for vertex number 12001 of the outer mesh is 3.9126 lGI for vertex number 12101 of the outer mesh is 4.2957 lGI for vertex number 12201 of the outer mesh is 4.3741 lGI for vertex number 12301 of the outer mesh is 3.7136 lGI for vertex number 12401 of the outer mesh is 2.4571 lGI for vertex number 12501 of the outer mesh is 4.3066 lGI for vertex number 12601 of the outer mesh is 3.2206 lGI for vertex number 12701 of the outer mesh is 3.4071 lGI for vertex number 12801 of the outer mesh is 3.0553 lGI for vertex number 12901 of the outer mesh is 2.8457 lGI for vertex number 13001 of the outer mesh is 4.4769 lGI for vertex number 13101 of the outer mesh is 3.7759 lGI for vertex number 13201 of the outer mesh is 3.7166 lGI for vertex number 13301 of the outer mesh is 2.6092 lGI for vertex number 13401 of the outer mesh is 3.0229 lGI for vertex number 13501 of the outer mesh is 3.9369 lGI for vertex number 13601 of the outer mesh is 3.9738 lGI for vertex number 13701 of the outer mesh is 4.2115 lGI for vertex number 13801 of the outer mesh is 2.6461 lGI for vertex number 13901 of the outer mesh is 4.2258 lGI for vertex number 14001 of the outer mesh is 3.8176 lGI for vertex number 14101 of the outer mesh is 2.8399 lGI for vertex number 14201 of the outer mesh is 2.4731 lGI for vertex number 14301 of the outer mesh is 2.942 lGI for vertex number 14401 of the outer mesh is 4.0188 lGI for vertex number 14501 of the outer mesh is 2.8705 lGI for vertex number 14601 of the outer mesh is 3.4797 lGI for vertex number 14701 of the outer mesh is 2.6495 lGI for vertex number 14801 of the outer mesh is 3.8154 lGI for vertex number 14901 of the outer mesh is 3.1341 lGI for vertex number 15001 of the outer mesh is 3.2125 lGI for vertex number 15101 of the outer mesh is 2.4521 lGI for vertex number 15201 of the outer mesh is 2.6763 lGI for vertex number 15301 of the outer mesh is 3.9274 lGI for vertex number 15401 of the outer mesh is 3.9627 lGI for vertex number 15501 of the outer mesh is 3.999 lGI for vertex number 15601 of the outer mesh is 2.6414 lGI for vertex number 15701 of the outer mesh is 2.4791 lGI for vertex number 15801 of the outer mesh is 3.4405 lGI for vertex number 15901 of the outer mesh is 3.1358 lGI for vertex number 16001 of the outer mesh is 3.7915 lGI for vertex number 16101 of the outer mesh is 3.4765 lGI for vertex number 16201 of the outer mesh is 2.5462 lGI for vertex number 16301 of the outer mesh is 4.0396 lGI for vertex number 16401 of the outer mesh is 2.8992 lGI for vertex number 16501 of the outer mesh is 3.2532 lGI for vertex number 16601 of the outer mesh is 3.1805 lGI for vertex number 16701 of the outer mesh is 3.5556 lGI for vertex number 16801 of the outer mesh is 2.9866 lGI for vertex number 16901 of the outer mesh is 3.5565 lGI for vertex number 17001 of the outer mesh is 3.2055 lGI for vertex number 17101 of the outer mesh is 2.6635 lGI for vertex number 17201 of the outer mesh is 2.4881 lGI for vertex number 17301 of the outer mesh is 3.6202 lGI for vertex number 17401 of the outer mesh is 3.2186 lGI for vertex number 17501 of the outer mesh is 3.1175 lGI for vertex number 17601 of the outer mesh is 2.7278 lGI for vertex number 17701 of the outer mesh is 2.9994 lGI for vertex number 17801 of the outer mesh is 3.7215 lGI for vertex number 17901 of the outer mesh is 3.2069 lGI for vertex number 18001 of the outer mesh is 2.605 lGI for vertex number 18101 of the outer mesh is 2.7362 lGI for vertex number 18201 of the outer mesh is 3.646 lGI for vertex number 18301 of the outer mesh is 2.9176 lGI for vertex number 18401 of the outer mesh is 2.4574 lGI for vertex number 18501 of the outer mesh is 2.6838 lGI for vertex number 18601 of the outer mesh is 2.9653 lGI for vertex number 18701 of the outer mesh is 2.9673 lGI for vertex number 18801 of the outer mesh is 3.2585 lGI for vertex number 18901 of the outer mesh is 3.1209 lGI for vertex number 19001 of the outer mesh is 3.5621 lGI for vertex number 19101 of the outer mesh is 3.582 lGI for vertex number 19201 of the outer mesh is 2.5707 lGI for vertex number 19301 of the outer mesh is 2.9702 lGI for vertex number 19401 of the outer mesh is 2.5617 lGI for vertex number 19501 of the outer mesh is 3.0537 lGI for vertex number 19601 of the outer mesh is 2.7922 lGI for vertex number 19701 of the outer mesh is 2.3716 lGI for vertex number 19801 of the outer mesh is 2.7563 lGI for vertex number 19901 of the outer mesh is 3.1578 lGI for vertex number 20001 of the outer mesh is 2.69 ratio saved at 20001 lGI for vertex number 20101 of the outer mesh is 2.3935 lGI for vertex number 20201 of the outer mesh is 3.5912 lGI for vertex number 20301 of the outer mesh is 3.362 lGI for vertex number 20401 of the outer mesh is 2.9785 lGI for vertex number 20501 of the outer mesh is 2.532 lGI for vertex number 20601 of the outer mesh is 3.5011 lGI for vertex number 20701 of the outer mesh is 3.4743 lGI for vertex number 20801 of the outer mesh is 4.5299 lGI for vertex number 20901 of the outer mesh is 3.2827 lGI for vertex number 21001 of the outer mesh is 2.8356 lGI for vertex number 21101 of the outer mesh is 3.691 lGI for vertex number 21201 of the outer mesh is 2.4958 lGI for vertex number 21301 of the outer mesh is 3.1405 lGI for vertex number 21401 of the outer mesh is 3.1064 lGI for vertex number 21501 of the outer mesh is 2.9198 lGI for vertex number 21601 of the outer mesh is 3.4062 lGI for vertex number 21701 of the outer mesh is 4.0853 lGI for vertex number 21801 of the outer mesh is 4.5757 lGI for vertex number 21901 of the outer mesh is 3.1184 lGI for vertex number 22001 of the outer mesh is 2.9792 lGI for vertex number 22101 of the outer mesh is 2.6488 lGI for vertex number 22201 of the outer mesh is 3.6395 lGI for vertex number 22301 of the outer mesh is 3.1308 lGI for vertex number 22401 of the outer mesh is 3.1427 lGI for vertex number 22501 of the outer mesh is 2.6196 lGI for vertex number 22601 of the outer mesh is 4.0754 lGI for vertex number 22701 of the outer mesh is 2.7227 lGI for vertex number 22801 of the outer mesh is 3.376 lGI for vertex number 22901 of the outer mesh is 3.9033 lGI for vertex number 23001 of the outer mesh is 4.1857 lGI for vertex number 23101 of the outer mesh is 2.9129 lGI for vertex number 23201 of the outer mesh is 2.8974 lGI for vertex number 23301 of the outer mesh is 2.985 lGI for vertex number 23401 of the outer mesh is 3.9272 lGI for vertex number 23501 of the outer mesh is 4.5344 lGI for vertex number 23601 of the outer mesh is 2.946 lGI for vertex number 23701 of the outer mesh is 2.7181 lGI for vertex number 23801 of the outer mesh is 2.5394 lGI for vertex number 23901 of the outer mesh is 3.5242 lGI for vertex number 24001 of the outer mesh is 2.6637 lGI for vertex number 24101 of the outer mesh is 2.8899 lGI for vertex number 24201 of the outer mesh is 3.8107 lGI for vertex number 24301 of the outer mesh is 5.0593 lGI for vertex number 24401 of the outer mesh is 2.565 lGI for vertex number 24501 of the outer mesh is 2.9092 lGI for vertex number 24601 of the outer mesh is 2.4753 lGI for vertex number 24701 of the outer mesh is 4.51 lGI for vertex number 24801 of the outer mesh is 2.4239 lGI for vertex number 24901 of the outer mesh is 2.8282 lGI for vertex number 25001 of the outer mesh is 2.4615 lGI for vertex number 25101 of the outer mesh is 4.8601 lGI for vertex number 25201 of the outer mesh is 2.8345 lGI for vertex number 25301 of the outer mesh is 2.3916 lGI for vertex number 25401 of the outer mesh is 4.3012 lGI for vertex number 25501 of the outer mesh is 2.9688 lGI for vertex number 25601 of the outer mesh is 2.2706 lGI for vertex number 25701 of the outer mesh is 2.4152 lGI for vertex number 25801 of the outer mesh is 2.6642 lGI for vertex number 25901 of the outer mesh is 3.5533 lGI for vertex number 26001 of the outer mesh is 4.5515 lGI for vertex number 26101 of the outer mesh is 2.4866 lGI for vertex number 26201 of the outer mesh is 3.5523 lGI for vertex number 26301 of the outer mesh is 3.8649 lGI for vertex number 26401 of the outer mesh is 3.8582 lGI for vertex number 26501 of the outer mesh is 2.4255 lGI for vertex number 26601 of the outer mesh is 2.8354 lGI for vertex number 26701 of the outer mesh is 4.1917 lGI for vertex number 26801 of the outer mesh is 3.9153 lGI for vertex number 26901 of the outer mesh is 2.8168 lGI for vertex number 27001 of the outer mesh is 2.1941 lGI for vertex number 27101 of the outer mesh is 4.3062 lGI for vertex number 27201 of the outer mesh is 3.0754 lGI for vertex number 27301 of the outer mesh is 2.5755 lGI for vertex number 27401 of the outer mesh is 2.1288 lGI for vertex number 27501 of the outer mesh is 2.9396 lGI for vertex number 27601 of the outer mesh is 3.4942 lGI for vertex number 27701 of the outer mesh is 4.6882 lGI for vertex number 27801 of the outer mesh is 1.647 lGI for vertex number 27901 of the outer mesh is 3.1682 lGI for vertex number 28001 of the outer mesh is 4.0398 lGI for vertex number 28101 of the outer mesh is 4.0042 lGI for vertex number 28201 of the outer mesh is 2.4355 lGI for vertex number 28301 of the outer mesh is 2.7652 lGI for vertex number 28401 of the outer mesh is 2.6841 lGI for vertex number 28501 of the outer mesh is 4.7663 lGI for vertex number 28601 of the outer mesh is 2.4097 lGI for vertex number 28701 of the outer mesh is 2.494 lGI for vertex number 28801 of the outer mesh is 4.3766 lGI for vertex number 28901 of the outer mesh is 2.7872 lGI for vertex number 29001 of the outer mesh is 5.3166 lGI for vertex number 29101 of the outer mesh is 2.0522 lGI for vertex number 29201 of the outer mesh is 2.6829 lGI for vertex number 29301 of the outer mesh is 3.1308 lGI for vertex number 29401 of the outer mesh is 2.8368 lGI for vertex number 29501 of the outer mesh is 2.6061 lGI for vertex number 29601 of the outer mesh is 2.8108 lGI for vertex number 29701 of the outer mesh is 2.5583 lGI for vertex number 29801 of the outer mesh is 2.6158 lGI for vertex number 29901 of the outer mesh is 1.5292 lGI for vertex number 30001 of the outer mesh is 2.6608 ratio saved at 30001 lGI for vertex number 30101 of the outer mesh is 4.1777 lGI for vertex number 30201 of the outer mesh is 3.704 lGI for vertex number 30301 of the outer mesh is 2.386 lGI for vertex number 30401 of the outer mesh is 2.1842 lGI for vertex number 30501 of the outer mesh is 3.9477 lGI for vertex number 30601 of the outer mesh is 3.2475 lGI for vertex number 30701 of the outer mesh is 2.7238 lGI for vertex number 30801 of the outer mesh is 1.5438 lGI for vertex number 30901 of the outer mesh is 2.7188 lGI for vertex number 31001 of the outer mesh is 3.735 lGI for vertex number 31101 of the outer mesh is 2.9919 lGI for vertex number 31201 of the outer mesh is 2.5496 lGI for vertex number 31301 of the outer mesh is 2.3478 lGI for vertex number 31401 of the outer mesh is 2.6531 lGI for vertex number 31501 of the outer mesh is 3.5518 lGI for vertex number 31601 of the outer mesh is 2.4048 lGI for vertex number 31701 of the outer mesh is 2.6158 lGI for vertex number 31801 of the outer mesh is 3.3245 lGI for vertex number 31901 of the outer mesh is 3.4703 lGI for vertex number 32001 of the outer mesh is 4.7557 lGI for vertex number 32101 of the outer mesh is 2.4506 lGI for vertex number 32201 of the outer mesh is 2.8054 lGI for vertex number 32301 of the outer mesh is 2.5014 lGI for vertex number 32401 of the outer mesh is 3.9311 lGI for vertex number 32501 of the outer mesh is 2.3537 lGI for vertex number 32601 of the outer mesh is 1.7844 lGI for vertex number 32701 of the outer mesh is 3.4938 lGI for vertex number 32801 of the outer mesh is 2.6228 lGI for vertex number 32901 of the outer mesh is 2.9255 lGI for vertex number 33001 of the outer mesh is 2.3785 lGI for vertex number 33101 of the outer mesh is 3.0481 lGI for vertex number 33201 of the outer mesh is 4.3476 lGI for vertex number 33301 of the outer mesh is 3.6819 lGI for vertex number 33401 of the outer mesh is 2.3529 lGI for vertex number 33501 of the outer mesh is 2.5776 lGI for vertex number 33601 of the outer mesh is 3.6473 lGI for vertex number 33701 of the outer mesh is 3.686 lGI for vertex number 33801 of the outer mesh is 2.1302 lGI for vertex number 33901 of the outer mesh is 2.4101 lGI for vertex number 34001 of the outer mesh is 3.478 lGI for vertex number 34101 of the outer mesh is 3.9624 lGI for vertex number 34201 of the outer mesh is 3.0167 lGI for vertex number 34301 of the outer mesh is 1.5815 lGI for vertex number 34401 of the outer mesh is 3.3853 lGI for vertex number 34501 of the outer mesh is 3.9173 ... remeasuring lGI value for vertex iV = 34601. It may take a few minutes. [Warning: Colon operands must be real scalars. This warning will become an error in a future release.] [> In getMeshArea (line 4) In compute_lgi (line 77) ] lGI for vertex number 34601 of the outer mesh is 2.4582 lGI for vertex number 34701 of the outer mesh is 2.2998 lGI for vertex number 34801 of the outer mesh is 2.6014 lGI for vertex number 34901 of the outer mesh is 3.7478 lGI for vertex number 35001 of the outer mesh is 3.1006 lGI for vertex number 35101 of the outer mesh is 4.6194 lGI for vertex number 35201 of the outer mesh is 2.3551 lGI for vertex number 35301 of the outer mesh is 2.8999 lGI for vertex number 35401 of the outer mesh is 2.4831 lGI for vertex number 35501 of the outer mesh is 3.5448 lGI for vertex number 35601 of the outer mesh is 4.5963 lGI for vertex number 35701 of the outer mesh is 2.4944 lGI for vertex number 35801 of the outer mesh is 3.4136 lGI for vertex number 35901 of the outer mesh is 4.2208 lGI for vertex number 36001 of the outer mesh is 5.8139 lGI for vertex number 36101 of the outer mesh is 1.438 lGI for vertex number 36201 of the outer mesh is 3.1505 lGI for vertex number 36301 of the outer mesh is 3.735 lGI for vertex number 36401 of the outer mesh is 4.3796 lGI for vertex number 36501 of the outer mesh is 2.1307 lGI for vertex number 36601 of the outer mesh is 2.4552 lGI for vertex number 36701 of the outer mesh is 4.0124 lGI for vertex number 36801 of the outer mesh is 2.9342 lGI for vertex number 36901 of the outer mesh is 1.7609 lGI for vertex number 37001 of the outer mesh is 2.7185 lGI for vertex number 37101 of the outer mesh is 3.6872 lGI for vertex number 37201 of the outer mesh is 3.6293 lGI for vertex number 37301 of the outer mesh is 3.9507 lGI for vertex number 37401 of the outer mesh is 2.264 lGI for vertex number 37501 of the outer mesh is 3.1149 lGI for vertex number 37601 of the outer mesh is 3.7905 lGI for vertex number 37701 of the outer mesh is 5.2735 lGI for vertex number 37801 of the outer mesh is 2.4884 lGI for vertex number 37901 of the outer mesh is 3.4533 lGI for vertex number 38001 of the outer mesh is 2.4848 lGI for vertex number 38101 of the outer mesh is 2.9054 lGI for vertex number 38201 of the outer mesh is 1.32 lGI for vertex number 38301 of the outer mesh is 3.1282 lGI for vertex number 38401 of the outer mesh is 2.5221 lGI for vertex number 38501 of the outer mesh is 5.9486 lGI for vertex number 38601 of the outer mesh is 1.4289 lGI for vertex number 38701 of the outer mesh is 2.9853 lGI for vertex number 38801 of the outer mesh is 4.4267 lGI for vertex number 38901 of the outer mesh is 5.8437 lGI for vertex number 39001 of the outer mesh is 1.9839 lGI for vertex number 39101 of the outer mesh is 3.2993 lGI for vertex number 39201 of the outer mesh is 4.499 lGI for vertex number 39301 of the outer mesh is 5.6892 lGI for vertex number 39401 of the outer mesh is 1.8667 lGI for vertex number 39501 of the outer mesh is 1.9889 lGI for vertex number 39601 of the outer mesh is 3.101 lGI for vertex number 39701 of the outer mesh is 2.7825 lGI for vertex number 39801 of the outer mesh is 5.2086 lGI for vertex number 39901 of the outer mesh is 1.4594 lGI for vertex number 40001 of the outer mesh is 3.3236 ratio saved at 40001 lGI for vertex number 40101 of the outer mesh is 4.8111 lGI for vertex number 40201 of the outer mesh is 5.7443 lGI for vertex number 40301 of the outer mesh is 1.8008 lGI for vertex number 40401 of the outer mesh is 3.5141 lGI for vertex number 40501 of the outer mesh is 4.7591 lGI for vertex number 40601 of the outer mesh is 6.12 lGI for vertex number 40701 of the outer mesh is 2.0962 lGI for vertex number 40801 of the outer mesh is 3.2495 lGI for vertex number 40901 of the outer mesh is 4.5382 lGI for vertex number 41001 of the outer mesh is 5.3451 lGI for vertex number 41101 of the outer mesh is 1.9759 lGI for vertex number 41201 of the outer mesh is 2.0556 lGI for vertex number 41301 of the outer mesh is 3.1671 lGI for vertex number 41401 of the outer mesh is 4.6843 lGI for vertex number 41501 of the outer mesh is 6.6313 lGI for vertex number 41601 of the outer mesh is 2.0289 lGI for vertex number 41701 of the outer mesh is 2.9255 lGI for vertex number 41801 of the outer mesh is 2.5044 lGI for vertex number 41901 of the outer mesh is 2.4486 lGI for vertex number 42001 of the outer mesh is 2.5191 lGI for vertex number 42101 of the outer mesh is 2.0331 lGI for vertex number 42201 of the outer mesh is 3.1886 lGI for vertex number 42301 of the outer mesh is 2.5633 lGI for vertex number 42401 of the outer mesh is 6.4229 lGI for vertex number 42501 of the outer mesh is 2.0467 lGI for vertex number 42601 of the outer mesh is 2.8438 lGI for vertex number 42701 of the outer mesh is 2.867 lGI for vertex number 42801 of the outer mesh is 2.4357 lGI for vertex number 42901 of the outer mesh is 6.7166 lGI for vertex number 43001 of the outer mesh is 2.0509 lGI for vertex number 43101 of the outer mesh is 3.0579 lGI for vertex number 43201 of the outer mesh is 2.4307 lGI for vertex number 43301 of the outer mesh is 6.323 lGI for vertex number 43401 of the outer mesh is 1.6062 lGI for vertex number 43501 of the outer mesh is 2.8087 lGI for vertex number 43601 of the outer mesh is 3.2762 lGI for vertex number 43701 of the outer mesh is 3.7999 lGI for vertex number 43801 of the outer mesh is 6.8571 lGI for vertex number 43901 of the outer mesh is 2.1467 lGI for vertex number 44001 of the outer mesh is 2.1205 lGI for vertex number 44101 of the outer mesh is 2.6191 lGI for vertex number 44201 of the outer mesh is 2.3896 lGI for vertex number 44301 of the outer mesh is 2.4477 lGI for vertex number 44401 of the outer mesh is 1.9831 lGI for vertex number 44501 of the outer mesh is 2.3019 lGI for vertex number 44601 of the outer mesh is 3.4734 lGI for vertex number 44701 of the outer mesh is 3.5143 lGI for vertex number 44801 of the outer mesh is 6.2545 lGI for vertex number 44901 of the outer mesh is 2.6699 lGI for vertex number 45001 of the outer mesh is 3.0338 lGI for vertex number 45101 of the outer mesh is 3.829 lGI for vertex number 45201 of the outer mesh is 6.7589 lGI for vertex number 45301 of the outer mesh is 1.775 lGI for vertex number 45401 of the outer mesh is 2.7824 lGI for vertex number 45501 of the outer mesh is 2.135 lGI for vertex number 45601 of the outer mesh is 3.7777 lGI for vertex number 45701 of the outer mesh is 7.1897 lGI for vertex number 45801 of the outer mesh is 1.2602 lGI for vertex number 45901 of the outer mesh is 2.9139 lGI for vertex number 46001 of the outer mesh is 3.6449 lGI for vertex number 46101 of the outer mesh is 7.0279 lGI for vertex number 46201 of the outer mesh is 5.0786 lGI for vertex number 46301 of the outer mesh is 2.1561 lGI for vertex number 46401 of the outer mesh is 2.6286 lGI for vertex number 46501 of the outer mesh is 3.6699 lGI for vertex number 46601 of the outer mesh is 6.9947 lGI for vertex number 46701 of the outer mesh is 2.0677 lGI for vertex number 46801 of the outer mesh is 2.843 lGI for vertex number 46901 of the outer mesh is 2.0633 lGI for vertex number 47001 of the outer mesh is 2.32 lGI for vertex number 47101 of the outer mesh is 6.2751 lGI for vertex number 47201 of the outer mesh is 1.9463 lGI for vertex number 47301 of the outer mesh is 3.0013 lGI for vertex number 47401 of the outer mesh is 2.3649 lGI for vertex number 47501 of the outer mesh is 3.5092 lGI for vertex number 47601 of the outer mesh is 1.9142 lGI for vertex number 47701 of the outer mesh is 2.2223 lGI for vertex number 47801 of the outer mesh is 2.8621 lGI for vertex number 47901 of the outer mesh is 3.8913 lGI for vertex number 48001 of the outer mesh is 2.3471 lGI for vertex number 48101 of the outer mesh is 6.0101 lGI for vertex number 48201 of the outer mesh is 2.2886 lGI for vertex number 48301 of the outer mesh is 2.6551 lGI for vertex number 48401 of the outer mesh is 2.2923 lGI for vertex number 48501 of the outer mesh is 5.9504 lGI for vertex number 48601 of the outer mesh is 1.7505 lGI for vertex number 48701 of the outer mesh is 2.4848 lGI for vertex number 48801 of the outer mesh is 2.3089 lGI for vertex number 48901 of the outer mesh is 2.3695 lGI for vertex number 49001 of the outer mesh is 5.0512 lGI for vertex number 49101 of the outer mesh is 2.4996 lGI for vertex number 49201 of the outer mesh is 2.5861 lGI for vertex number 49301 of the outer mesh is 2.6376 lGI for vertex number 49401 of the outer mesh is 2.2395 lGI for vertex number 49501 of the outer mesh is 5.8957 lGI for vertex number 49601 of the outer mesh is 2.9126 lGI for vertex number 49701 of the outer mesh is 2.043 lGI for vertex number 49801 of the outer mesh is 2.5721 lGI for vertex number 49901 of the outer mesh is 4.0488 lGI for vertex number 50001 of the outer mesh is 5.9031 ratio saved at 50001 lGI for vertex number 50101 of the outer mesh is 5.7574 lGI for vertex number 50201 of the outer mesh is 2.0195 lGI for vertex number 50301 of the outer mesh is 2.54 lGI for vertex number 50401 of the outer mesh is 2.8199 lGI for vertex number 50501 of the outer mesh is 5.7279 lGI for vertex number 50601 of the outer mesh is 5.7412 lGI for vertex number 50701 of the outer mesh is 1.8317 lGI for vertex number 50801 of the outer mesh is 2.5666 lGI for vertex number 50901 of the outer mesh is 4.0074 lGI for vertex number 51001 of the outer mesh is 3.431 lGI for vertex number 51101 of the outer mesh is 2.0923 lGI for vertex number 51201 of the outer mesh is 2.1045 lGI for vertex number 51301 of the outer mesh is 2.3655 lGI for vertex number 51401 of the outer mesh is 2.2613 lGI for vertex number 51501 of the outer mesh is 2.4718 lGI for vertex number 51601 of the outer mesh is 2.1396 lGI for vertex number 51701 of the outer mesh is 2.157 lGI for vertex number 51801 of the outer mesh is 1.9465 lGI for vertex number 51901 of the outer mesh is 5.974 lGI for vertex number 52001 of the outer mesh is 5.358 lGI for vertex number 52101 of the outer mesh is 1.6931 lGI for vertex number 52201 of the outer mesh is 2.3872 lGI for vertex number 52301 of the outer mesh is 3.6876 lGI for vertex number 52401 of the outer mesh is 5.6944 lGI for vertex number 52501 of the outer mesh is 5.2285 lGI for vertex number 52601 of the outer mesh is 2.03 lGI for vertex number 52701 of the outer mesh is 2.1665 lGI for vertex number 52801 of the outer mesh is 2.2772 lGI for vertex number 52901 of the outer mesh is 5.5293 lGI for vertex number 53001 of the outer mesh is 4.5602 lGI for vertex number 53101 of the outer mesh is 1.9175 lGI for vertex number 53201 of the outer mesh is 2.7123 lGI for vertex number 53301 of the outer mesh is 4.1894 lGI for vertex number 53401 of the outer mesh is 5.4404 lGI for vertex number 53501 of the outer mesh is 2.1529 lGI for vertex number 53601 of the outer mesh is 2.1911 lGI for vertex number 53701 of the outer mesh is 3.5627 lGI for vertex number 53801 of the outer mesh is 5.7025 lGI for vertex number 53901 of the outer mesh is 2.1012 lGI for vertex number 54001 of the outer mesh is 2.4579 lGI for vertex number 54101 of the outer mesh is 2.1217 lGI for vertex number 54201 of the outer mesh is 2.9174 lGI for vertex number 54301 of the outer mesh is 2.1836 lGI for vertex number 54401 of the outer mesh is 2.3367 lGI for vertex number 54501 of the outer mesh is 2.1076 lGI for vertex number 54601 of the outer mesh is 3.9415 lGI for vertex number 54701 of the outer mesh is 4.8075 lGI for vertex number 54801 of the outer mesh is 1.8867 lGI for vertex number 54901 of the outer mesh is 2.2982 lGI for vertex number 55001 of the outer mesh is 2.4999 lGI for vertex number 55101 of the outer mesh is 5.1401 lGI for vertex number 55201 of the outer mesh is 2.1776 lGI for vertex number 55301 of the outer mesh is 2.5202 lGI for vertex number 55401 of the outer mesh is 2.3993 lGI for vertex number 55501 of the outer mesh is 3.765 lGI for vertex number 55601 of the outer mesh is 4.2777 lGI for vertex number 55701 of the outer mesh is 2.2563 lGI for vertex number 55801 of the outer mesh is 2.2951 lGI for vertex number 55901 of the outer mesh is 3.4557 lGI for vertex number 56001 of the outer mesh is 2.6924 lGI for vertex number 56101 of the outer mesh is 2.1335 lGI for vertex number 56201 of the outer mesh is 2.0063 lGI for vertex number 56301 of the outer mesh is 2.7217 lGI for vertex number 56401 of the outer mesh is 2.4411 lGI for vertex number 56501 of the outer mesh is 4.2284 lGI for vertex number 56601 of the outer mesh is 2.1239 lGI for vertex number 56701 of the outer mesh is 2.9199 lGI for vertex number 56801 of the outer mesh is 2.5129 lGI for vertex number 56901 of the outer mesh is 3.899 lGI for vertex number 57001 of the outer mesh is 2.5874 lGI for vertex number 57101 of the outer mesh is 2.7538 lGI for vertex number 57201 of the outer mesh is 2.727 lGI for vertex number 57301 of the outer mesh is 3.0317 lGI for vertex number 57401 of the outer mesh is 3.8282 lGI for vertex number 57501 of the outer mesh is 2.2773 lGI for vertex number 57601 of the outer mesh is 2.8061 lGI for vertex number 57701 of the outer mesh is 2.5103 lGI for vertex number 57801 of the outer mesh is 4.4836 lGI for vertex number 57901 of the outer mesh is 2.0683 lGI for vertex number 58001 of the outer mesh is 2.4705 lGI for vertex number 58101 of the outer mesh is 2.8592 lGI for vertex number 58201 of the outer mesh is 2.7003 lGI for vertex number 58301 of the outer mesh is 3.6072 lGI for vertex number 58401 of the outer mesh is 2.4933 lGI for vertex number 58501 of the outer mesh is 2.5109 lGI for vertex number 58601 of the outer mesh is 3.694 lGI for vertex number 58701 of the outer mesh is 4.6857 lGI for vertex number 58801 of the outer mesh is 2.4268 lGI for vertex number 58901 of the outer mesh is 2.1837 lGI for vertex number 59001 of the outer mesh is 2.8224 lGI for vertex number 59101 of the outer mesh is 3.7757 lGI for vertex number 59201 of the outer mesh is 2.2354 lGI for vertex number 59301 of the outer mesh is 2.6172 lGI for vertex number 59401 of the outer mesh is 3.1224 lGI for vertex number 59501 of the outer mesh is 2.8926 lGI for vertex number 59601 of the outer mesh is 2.3205 lGI for vertex number 59701 of the outer mesh is 2.1267 lGI for vertex number 59801 of the outer mesh is 2.9158 lGI for vertex number 59901 of the outer mesh is 3.9373 lGI for vertex number 60001 of the outer mesh is 3.2194 ratio saved at 60001 lGI for vertex number 60101 of the outer mesh is 2.5594 lGI for vertex number 60201 of the outer mesh is 2.0404 lGI for vertex number 60301 of the outer mesh is 3.3812 lGI for vertex number 60401 of the outer mesh is 4.3059 lGI for vertex number 60501 of the outer mesh is 2.6496 lGI for vertex number 60601 of the outer mesh is 3.6584 lGI for vertex number 60701 of the outer mesh is 2.1686 lGI for vertex number 60801 of the outer mesh is 2.5777 lGI for vertex number 60901 of the outer mesh is 3.2288 lGI for vertex number 61001 of the outer mesh is 4.6694 lGI for vertex number 61101 of the outer mesh is 2.2113 lGI for vertex number 61201 of the outer mesh is 2.9744 lGI for vertex number 61301 of the outer mesh is 3.2412 lGI for vertex number 61401 of the outer mesh is 2.3685 lGI for vertex number 61501 of the outer mesh is 2.582 lGI for vertex number 61601 of the outer mesh is 3.5675 lGI for vertex number 61701 of the outer mesh is 4.4013 lGI for vertex number 61801 of the outer mesh is 2.3709 lGI for vertex number 61901 of the outer mesh is 3.2096 lGI for vertex number 62001 of the outer mesh is 3.0105 lGI for vertex number 62101 of the outer mesh is 2.3249 lGI for vertex number 62201 of the outer mesh is 2.7958 lGI for vertex number 62301 of the outer mesh is 3.2425 lGI for vertex number 62401 of the outer mesh is 3.7832 lGI for vertex number 62501 of the outer mesh is 2.3619 lGI for vertex number 62601 of the outer mesh is 3.0085 lGI for vertex number 62701 of the outer mesh is 3.9896 lGI for vertex number 62801 of the outer mesh is 2.3639 lGI for vertex number 62901 of the outer mesh is 2.8232 lGI for vertex number 63001 of the outer mesh is 2.8612 lGI for vertex number 63101 of the outer mesh is 2.3424 lGI for vertex number 63201 of the outer mesh is 2.7953 lGI for vertex number 63301 of the outer mesh is 2.9691 lGI for vertex number 63401 of the outer mesh is 2.2995 lGI for vertex number 63501 of the outer mesh is 2.7171 lGI for vertex number 63601 of the outer mesh is 2.759 lGI for vertex number 63701 of the outer mesh is 2.4233 lGI for vertex number 63801 of the outer mesh is 1.9561 lGI for vertex number 63901 of the outer mesh is 2.8549 lGI for vertex number 64001 of the outer mesh is 2.4538 lGI for vertex number 64101 of the outer mesh is 2.1405 lGI for vertex number 64201 of the outer mesh is 3.4376 lGI for vertex number 64301 of the outer mesh is 2.1222 lGI for vertex number 64401 of the outer mesh is 2.6427 lGI for vertex number 64501 of the outer mesh is 3.3523 lGI for vertex number 64601 of the outer mesh is 2.4781 lGI for vertex number 64701 of the outer mesh is 2.2251 lGI for vertex number 64801 of the outer mesh is 2.9387 lGI for vertex number 64901 of the outer mesh is 3.113 lGI for vertex number 65001 of the outer mesh is 2.0345 lGI for vertex number 65101 of the outer mesh is 2.8597 lGI for vertex number 65201 of the outer mesh is 3.1592 lGI for vertex number 65301 of the outer mesh is 2.2722 lGI for vertex number 65401 of the outer mesh is 2.6439 lGI for vertex number 65501 of the outer mesh is 3.1117 lGI for vertex number 65601 of the outer mesh is 1.9934 lGI for vertex number 65701 of the outer mesh is 2.6887 lGI for vertex number 65801 of the outer mesh is 3.2504 lGI for vertex number 65901 of the outer mesh is 2.4044 lGI for vertex number 66001 of the outer mesh is 2.3448 lGI for vertex number 66101 of the outer mesh is 3.3336 lGI for vertex number 66201 of the outer mesh is 2.407 lGI for vertex number 66301 of the outer mesh is 2.2574 lGI for vertex number 66401 of the outer mesh is 3.1796 lGI for vertex number 66501 of the outer mesh is 2.0767 lGI for vertex number 66601 of the outer mesh is 2.2589 lGI for vertex number 66701 of the outer mesh is 3.1302 lGI for vertex number 66801 of the outer mesh is 2.4755 lGI for vertex number 66901 of the outer mesh is 2.4548 lGI for vertex number 67001 of the outer mesh is 2.9635 lGI for vertex number 67101 of the outer mesh is 2.1561 lGI for vertex number 67201 of the outer mesh is 3.2957 lGI for vertex number 67301 of the outer mesh is 2.2974 lGI for vertex number 67401 of the outer mesh is 2.402 lGI for vertex number 67501 of the outer mesh is 3.4366 lGI for vertex number 67601 of the outer mesh is 2.8606 lGI for vertex number 67701 of the outer mesh is 2.2425 lGI for vertex number 67801 of the outer mesh is 2.7843 lGI for vertex number 67901 of the outer mesh is 2.7525 lGI for vertex number 68001 of the outer mesh is 2.248 lGI for vertex number 68101 of the outer mesh is 2.7137 lGI for vertex number 68201 of the outer mesh is 2.8035 lGI for vertex number 68301 of the outer mesh is 2.5081 lGI for vertex number 68401 of the outer mesh is 2.9015 lGI for vertex number 68501 of the outer mesh is 2.18 lGI for vertex number 68601 of the outer mesh is 2.5945 lGI for vertex number 68701 of the outer mesh is 2.4624 lGI for vertex number 68801 of the outer mesh is 2.393 lGI for vertex number 68901 of the outer mesh is 2.4189 lGI for vertex number 69001 of the outer mesh is 2.5941 lGI for vertex number 69101 of the outer mesh is 2.1265 lGI for vertex number 69201 of the outer mesh is 2.2725 lGI for vertex number 69301 of the outer mesh is 2.3331 lGI for vertex number 69401 of the outer mesh is 2.2841 lGI for vertex number 69501 of the outer mesh is 2.2773 lGI for vertex number 69601 of the outer mesh is 2.208 lGI for vertex number 69701 of the outer mesh is 2.6214 lGI for vertex number 69801 of the outer mesh is 2.0759 lGI for vertex number 69901 of the outer mesh is 2.288 lGI for vertex number 70001 of the outer mesh is 2.4862 ratio saved at 70001 lGI for vertex number 70101 of the outer mesh is 2.1289 lGI for vertex number 70201 of the outer mesh is 2.5169 lGI for vertex number 70301 of the outer mesh is 2.281 lGI for vertex number 70401 of the outer mesh is 2.5007 lGI for vertex number 70501 of the outer mesh is 2.3397 lGI for vertex number 70601 of the outer mesh is 2.389 lGI for vertex number 70701 of the outer mesh is 2.2978 lGI for vertex number 70801 of the outer mesh is 2.2379 .. Almost finished .. now back-propagating values on the folded mesh .. average_lGI_over_the_hemisphere = 3.4284 DONE. deltaT = 472.8000 ================= mris_convert -c /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc lh.pial lh.pial_lgi ================= mris_convert -c /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc lh.pial lh.pial_lgi Reading in lh.pial ================= rm -Rf /scratch/juno/dal247378/batches/batch_001/sub-06DJHEV0_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= done. Start: Tue Apr 21 13:10:30 CDT 2026 End: Tue Apr 21 14:43:39 CDT 2026