Sun Sep 28 17:46:17 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/recon-all -subjid sub-04P0G6LK_ses-00A -i sub-04P0G6LK_ses-00A_rec-NORM_run-01_T1w.nii.gz -all subjid sub-04P0G6LK_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Actual FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 build-stamp.txt: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 8192 kbytes maxproc 1545830 maxlocks unlimited maxsignal 1545830 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 377Gi 30Gi 305Gi 16Gi 60Gi 346Gi Swap: 0B 0B 0B SLURM_JOB_ID 55951 ######################################## program versions used 8.0.0 (freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a) 8.0.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mris_convert -all-info ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:17-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:18-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:18-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:18-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:18-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:18-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:18-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:18-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:18-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:18-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_motion_correct.fsl 8.0.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/09/28-22:46:18-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-01-05 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ####################################### GCADIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A_rec-NORM_run-01_T1w.nii.gz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig/001.mgz mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A_rec-NORM_run-01_T1w.nii.gz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig/001.mgz INFO: using NIfTI-1 sform (sform_code=1) reading from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A_rec-NORM_run-01_T1w.nii.gz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Sun Sep 28 17:46:20 CDT 2025 Found 1 runs /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig/001.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz mri_info /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz rawavg.mgz ======================================== Volume information for /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz type: MGH intent: MRI (0) dimensions: 176 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: SHORT (4) fov: 256.000 dof: 1 xstart: -88.0, xend: 88.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 2500.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = 1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 0.5000 : x_a = 0.0000, y_a = 1.0000, z_a = 0.0000, c_a = 21.0000 : x_s = 0.0000, y_s = 0.0000, z_s = 1.0000, c_s = -29.0000 talairach xfm : Orientation : RAS Primary Slice Direction: axial voxel to ras transform: 1.0000 0.0000 0.0000 -87.5000 0.0000 1.0000 0.0000 -107.0000 0.0000 0.0000 1.0000 -157.0000 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant 1 ras to voxel transform: 1.0000 0.0000 0.0000 87.5000 0.0000 1.0000 0.0000 107.0000 0.0000 0.0000 1.0000 157.0000 0.0000 0.0000 0.0000 1.0000 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz --conform mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz --conform reading from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) volume geometry: valid : 1720616000 extent : (256, 256, 256) voxel : ( 1.0000, 1.0000, 1.0000) x_(ras) : (-1.0000, 0.0000, 0.0000) y_(ras) : ( 0.0000, 0.0000, -1.0000) z_(ras) : ( 0.0000, 1.0000, 0.0000) c_(ras) : ( 0.5000, 21.0000, -29.0000) shears : ( 0.0000, 0.0000, 0.0000) file : /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram 0 4095 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz... mri_add_xform_to_header -c /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/talairach.xfm /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz INFO: extension is mgz mri_info /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz orig.mgz ======================================== Volume information for /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz type: MGH intent: MRI (0) dimensions: 256 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: UCHAR (0) fov: 256.000 dof: 1 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 2500.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 0.5000 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = 21.0000 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -29.0000 talairach xfm : /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal voxel to ras transform: -1.0000 0.0000 0.0000 128.5000 0.0000 0.0000 1.0000 -107.0000 0.0000 -1.0000 0.0000 99.0000 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant -1 ras to voxel transform: -1.0000 -0.0000 -0.0000 128.5000 -0.0000 -0.0000 -1.0000 99.0000 -0.0000 1.0000 -0.0000 107.0000 -0.0000 -0.0000 -0.0000 1.0000 lta_convert --inlta identity.nofile --src /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz --trg /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz --outlta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg2orig.lta 8.0.0 --inlta: identity.nofile input LTA transform. --src: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz src image (geometry). --trg: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz trg image (geometry). --outlta: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg2orig.lta output LTA. LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg2orig.lta... lta_convert successful. mri_synthstrip --threads 1 -i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/synthstrip.mgz Configuring model on the CPU Running SynthStrip model version 1 Input image read from: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz Processing frame (of 1): 1 done Masked image saved to: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/synthstrip.mgz If you use SynthStrip in your analysis, please cite: ---------------------------------------------------- SynthStrip: Skull-Stripping for Any Brain Image A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann NeuroImage 206 (2022), 119474 https://doi.org/10.1016/j.neuroimage.2022.119474 Website: https://synthstrip.io mri_synthseg --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/synthseg.rca.mgz --threads 1 --vol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/synthseg.vol.csv --keepgeom --addctab --cpu SynthSeg 2.0 using CPU, hiding all CUDA_VISIBLE_DEVICES using 1 thread addctab True predicting 1/1 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 136s 136s/step Reslicing to have same geom as the input [1. 1. 1.] segmentation saved in: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/synthseg.rca.mgz volumes saved in: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/synthseg.vol.csv #@# mri_synthseg vmpeak 28023092 If you use this tool in a publication, please cite: SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining B. Billot, D.N. Greve, O. Puonti, A. Thielscher, K. Van Leemput, B. Fischl, A.V. Dalca, J.E. Iglesias Medical Image Analysis, 2023. Sun Sep 28 17:49:34 CDT 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/synthstrip.mgz --t /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --affine-only --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305 --threads 1 -rwxr-x--- 1 root kdamme 30890 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1831233 Sun Sep 28 17:49:34 CDT 2025 mri_synthmorph -m affine -t /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305/aff.lta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/synthstrip.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz -j 1 #@# mri_synthmorph: affine, threads: 1, VmPeak: 10697824 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A lta_convert --invert --inlta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305/aff.lta --outlta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta 8.0.0 --invert: will invert transform. --inlta: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305/aff.lta input LTA transform. --outlta: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta output LTA. LTA read, type : 1 1.02182 0.03004 0.03010 4.03056; -0.05145 1.11621 0.12681 -5.39721; -0.03988 -0.11778 1.15155 5.11603; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta... lta_convert successful. To check affine registration tkregisterfv --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/synthstrip.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --reg /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305/aff.lta AffineOnly specified, so exiting now Started at Sun Sep 28 17:49:34 CDT 2025 Ended at Sun Sep 28 17:50:12 CDT 2025 Fs-Synthmorph-Reg-Run-Time-Sec 38 Fs-Synthmorph-Reg-Run-Time-Min 0.63 Fs-Synthmorph-Reg-Run-Time-Hours 0.01 fs-synthmorph-reg Done 8.0.0 --ltavox2vox: output LTA as VOX_TO_VOX transform. --inlta: synthmorph.mni305/aff.lta input LTA transform. --outlta: talairach.xfm.lta output LTA. LTA read, type : 1 1.02182 0.03004 0.03010 4.03056; -0.05145 1.11621 0.12681 -5.39721; -0.03988 -0.11778 1.15155 5.11603; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file talairach.xfm.lta... lta_convert successful. 8.0.0 --inlta: talairach.xfm.lta input LTA transform. --outmni: talairach.xfm output MNI/XFM matrix. LTA read, type : 1 1.02182 0.03004 0.03010 4.03056; -0.05145 1.11621 0.12681 -5.39721; -0.03988 -0.11778 1.15155 5.11604; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. fs-synthmorph-reg --s sub-04P0G6LK_ses-00A --threads 1 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz --test Sun Sep 28 17:50:12 CDT 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg --s sub-04P0G6LK_ses-00A --threads 1 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz --test -rwxr-x--- 1 root kdamme 30890 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1833131 mri_mask -bb 3 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz cropping npad = 3 DoAbs = 0 Computing bounding box, npad = 3, 3, 3, 3, 3, 3 38 0 0 181 256 256 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz...done. lta_convert --inlta identity.nofile --src /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz --trg /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz --outlta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta 8.0.0 --inlta: identity.nofile input LTA transform. --src: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz src image (geometry). --trg: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz trg image (geometry). --outlta: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta output LTA. LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta... lta_convert successful. Sun Sep 28 17:50:13 CDT 2025 mri_synthmorph -m affine -t /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.cropped.nii.gz -j 1 #@# mri_synthmorph: affine, threads: 1, VmPeak: 10655012 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io Sun Sep 28 17:50:48 CDT 2025 mri_concatenate_lta -invert1 -invertout /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta invert the first LTA before applying it invert the output LTA Read individual LTAs Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2... Inverting output LTA Writing combined LTA to file /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta... mri_concatenate_lta successful. mri_concatenate_lta -invert2 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/reg.1.0mm.to.1.0mm.cropped.lta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert the second LTA before applying it Read individual LTAs Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2... Writing combined LTA to file /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta... mri_concatenate_lta successful. lta_convert --invert --inlta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --outlta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta 8.0.0 --invert: will invert transform. --inlta: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta input LTA transform. --outlta: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta output LTA. LTA read, type : 1 0.93435 -0.02191 -0.03235 -3.29515; 0.03260 0.85679 -0.06028 4.19370; 0.03366 0.09703 0.80996 -3.53145; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta... lta_convert successful. lta_convert --inlta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta --outmni /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.xfm 8.0.0 --inlta: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta input LTA transform. --outmni: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.xfm output MNI/XFM matrix. LTA read, type : 1 1.06789 0.02229 0.04432 3.58187; -0.04338 1.15649 0.08434 -4.69507; -0.03918 -0.13947 1.22268 4.77363; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. To check affine registration tkregisterfv --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz --reg /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta mri_synthmorph -m deform -t /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz -i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.cropped.nii.gz -j 1 -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz #@# mri_synthmorph: deform, threads: 1, VmPeak: 19904596 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io mri_warp_convert --inras /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz --insrcgeom /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz --outm3z /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz --vg-thresh 1e-5 --lta1-inv /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta --lta2 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/reg.1.0mm.cropped.to.1.0mm.lta 8.0.0 --inras: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz input RAS warp. --insrcgeom: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz atlas/source image (used for geometry). --outm3z: /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz output M3Z. Setting vg_isEqual_Threshold to 0.000010 Applying LTAs to the GCAM GCAMwrite(/scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz) [INFO] Warpfield::convert(): converting GCAM ... [INFO] Warpfield::convert(): gcam [193 x 229 x 193] [INFO] Warpfield::convert(): gcam image [256 x 256 x 256] [INFO] Warpfield::convert(): gcam atlas [193 x 229 x 193] [INFO] Warpfield::convert(): total out of range voxel count: 0 [INFO] niiWrite(): MGZ_INTENT_WARPMAP => NIFTI_INTENT_DISPVECT, intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [INFO] niiWrite(): convert displacement from 0 to 3 mri_warp_convert successful. mri_ca_register -invert-and-save /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz INFO: using NIfTI-1 sform (sform_code=1) Loading gcam [INFO] niiRead(): intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [DEBUG] Warpfield::read() gcam->status = GCAM_LABELED setting orig areas to linear transform determinant scaled 1.00 Computing inverse of GCAM Filling inverse of GCAM Allocating inv_gcam...(256, 256, 256) Saving inverse to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz GCAMwrite(/scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz) [INFO] Warpfield::convert(): converting GCAM ... [INFO] Warpfield::convert(): gcam [256 x 256 x 256] [INFO] Warpfield::convert(): gcam image [193 x 229 x 193] [INFO] Warpfield::convert(): gcam atlas [256 x 256 x 256] [INFO] Warpfield::convert(): total out of range voxel count: 0 [INFO] niiWrite(): MGZ_INTENT_WARPMAP => NIFTI_INTENT_DISPVECT, intent_code = 1006, dimensions = {5, 256, 256, 256, 1, 3, 1, 1} [INFO] niiWrite(): convert displacement from 0 to 3 mri_vol2vol --regheader --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz movvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz targvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz outvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1759593769 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -0.50000; 0.00000 1.00000 0.00000 13.50000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -20.00000; 0.00000 1.00000 0.00000 -20.00000; 0.00000 0.00000 1.00000 -2.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_convert -rt nearest /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz -at /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz mri_convert -rt nearest /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz -at /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz INFO: using NIfTI-1 sform (sform_code=1) reading from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: Reading transformation from file /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz... INFO: Applying transformation from file /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz... Applying morph_3d ... [INFO] niiRead(): intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [DEBUG] Warpfield::read() gcam->status = GCAM_LABELED setting orig areas to linear transform determinant scaled 1.00 morphing to atlas with resample type 0 writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz... mri_diff --po /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz mri_diff --po /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz diffcount 4653609 Volumes differ in pixel data maxdiff 147.54197693 at 126 54 142 0 tkmeditfv -f /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz -aux /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz Started at Sun Sep 28 17:50:12 CDT 2025 Ended at Sun Sep 28 18:04:24 CDT 2025 Fs-Synthmorph-Reg-Run-Time-Sec 852 Fs-Synthmorph-Reg-Run-Time-Min 14.20 Fs-Synthmorph-Reg-Run-Time-Hours 0.24 fs-synthmorph-reg Done #-------------------------------------------- #@# Nu Intensity Correction Sun Sep 28 18:04:24 CDT 2025 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 8.0.0 Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux Sun Sep 28 18:04:24 CDT 2025 tmpdir is ./tmp.mri_nu_correct.mni.1838466 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.1838466/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_binarize --i ./tmp.mri_nu_correct.mni.1838466/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.1838466/ones.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.1838466/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.1838466/ones.mgz sysname Linux hostname c-01-05 machine x86_64 user dal247378 input ./tmp.mri_nu_correct.mni.1838466/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.1838466/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777216 voxels in final mask Writing output to ./tmp.mri_nu_correct.mni.1838466/ones.mgz Count: 16777216 16777216.000000 16777216 100.000000 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1838466/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.1838466/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1838466/input.mean.dat 8.0.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1838466/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.1838466/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1838466/input.mean.dat sysname Linux hostname c-01-05 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.1838466/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.1838466/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1838466/ones.mgz --i ./tmp.mri_nu_correct.mni.1838466/nu0.mgz --sum ./tmp.mri_nu_correct.mni.1838466/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1838466/output.mean.dat 8.0.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1838466/ones.mgz --i ./tmp.mri_nu_correct.mni.1838466/nu0.mgz --sum ./tmp.mri_nu_correct.mni.1838466/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1838466/output.mean.dat sysname Linux hostname c-01-05 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.1838466/ones.mgz Loading ./tmp.mri_nu_correct.mni.1838466/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.1838466/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.1838466/nu0.mgz ./tmp.mri_nu_correct.mni.1838466/nu0.mgz mul 1.38018664706851328577 Packing Done packing Unpacking Saving result to './tmp.mri_nu_correct.mni.1838466/nu0.mgz' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 208164 mri_convert ./tmp.mri_nu_correct.mni.1838466/nu0.mgz nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.1838466/nu0.mgz nu.mgz --like orig.mgz reading from ./tmp.mri_nu_correct.mni.1838466/nu0.mgz... TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 3 seconds. FIRST_PERCENTILE 0.010000 WM_PERCENTILE 0.900000 MAX_R 50.000000 i1 = 5, i2 = 62 #mri_make_uchar# mapping 13 160 to 3 110 : b -6.87544 m 0.731858 : thresh 9.3945 maxsat 357.823 : nzero 12319164 nsat 0 Sun Sep 28 18:07:01 CDT 2025 mri_nu_correct.mni done mri_add_xform_to_header -c /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Sun Sep 28 18:07:02 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 1.02182 0.03004 0.03010 4.03056; -0.05145 1.11621 0.12681 -5.39721; -0.03988 -0.11778 1.15155 5.11604; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 17 Starting OpenSpline(): npoints = 17 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 70 (70), valley at 50 (50) csf peak at 36, setting threshold to 58 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 67 (67), valley at 46 (46) csf peak at 34, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 1 minutes and 13 seconds. #-------------------------------------- #@# MCADura Segmentation Sun Sep 28 18:08:15 CDT 2025 mri_mcadura_seg --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/mca-dura.mgz --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm Sun Sep 28 18:08:15 CDT 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_mcadura_seg --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/mca-dura.mgz --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm -rwxr-x--- 1 root kdamme 13384 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_mcadura_seg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1841770 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_vol2vol --reg /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --mov /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.lh.nii.gz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/mcadura.prior.lh.nii.gz regio_read_register: loading lta Matrix from regfile: -1.06789 -0.02229 -0.04432 -2.79880; -0.03918 -0.13947 1.22268 -52.13264; 0.04338 -1.15649 -0.08434 -34.62363; 0.00000 0.00000 0.00000 1.00000; Getting target volume geom from lta destination movvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.lh.nii.gz outvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/mcadura.prior.lh.nii.gz regfile /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1759900390 Final tkRAS-to-tkRAS Matrix is: -1.06789 -0.02229 -0.04432 -2.79880; -0.03918 -0.13947 1.22268 -52.13264; 0.04338 -1.15649 -0.08434 -34.62363; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.06789 -0.04432 0.02229 238.80765; 0.04338 -0.08434 1.15649 6.33545; 0.03918 -1.22268 -0.13947 213.70805; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop-to-fov-mm 80 80 80 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/mcadura.prior.lh.nii.gz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/lh.crop.nii.gz CropToFoVmm 80 80 80 DoAbs = 0 Found 5813 voxels in mask (pct= 0.03) MRIcropToFoV(): thresh=0.001 FoV = (80,80,80) nhits=5813 centroid = (169.134,119.32,130.8) min = (140,98,115) max = (190,136,145) delta = (51,39,31) Region 129 79 91 80 80 80 129 79 91 80 80 80 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/lh.crop.nii.gz...done. mri_vol2vol --regheader --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz --targ /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/lh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.lh.crop.nii.gz movvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz targvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/lh.crop.nii.gz outvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.lh.crop.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1759197275 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -41.00000; 0.00000 1.00000 0.00000 3.00000; 0.00000 0.00000 1.00000 9.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 129.00000; 0.00000 1.00000 0.00000 79.00000; 0.00000 0.00000 1.00000 91.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.lh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.lh.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.lh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.lh.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/dumca.lh.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 2 inshape (72, 72, 72) features 24 (None, 72, 72, 72, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 Segmenting image 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.lh.crop.nii.gz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 1s 1s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.lh.mgz vmpcma: 7319844 done mri_vol2vol --regheader --interp nearest --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.lh.mgz --targ /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.lh.uncropped.mgz movvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.lh.mgz targvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.lh.uncropped.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1759881999 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 41.00000; 0.00000 1.00000 0.00000 -3.00000; 0.00000 0.00000 1.00000 -9.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -129.00000; 0.00000 1.00000 0.00000 -79.00000; 0.00000 0.00000 1.00000 -91.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --reg /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --mov /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.rh.nii.gz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/mcadura.prior.rh.nii.gz regio_read_register: loading lta Matrix from regfile: -1.06789 -0.02229 -0.04432 -2.79880; -0.03918 -0.13947 1.22268 -52.13264; 0.04338 -1.15649 -0.08434 -34.62363; 0.00000 0.00000 0.00000 1.00000; Getting target volume geom from lta destination movvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.rh.nii.gz outvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/mcadura.prior.rh.nii.gz regfile /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1759406292 Final tkRAS-to-tkRAS Matrix is: -1.06789 -0.02229 -0.04432 -2.79880; -0.03918 -0.13947 1.22268 -52.13264; 0.04338 -1.15649 -0.08434 -34.62363; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.06789 -0.04432 0.02229 238.80765; 0.04338 -0.08434 1.15649 6.33545; 0.03918 -1.22268 -0.13947 213.70805; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop-to-fov-mm 80 80 80 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/mcadura.prior.rh.nii.gz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/rh.crop.nii.gz CropToFoVmm 80 80 80 DoAbs = 0 Found 6129 voxels in mask (pct= 0.04) MRIcropToFoV(): thresh=0.001 FoV = (80,80,80) nhits=6129 centroid = (95.5332,116.721,134.532) min = (75,94,119) max = (120,135,152) delta = (46,42,34) Region 56 77 95 80 80 80 56 77 95 80 80 80 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/rh.crop.nii.gz...done. mri_vol2vol --regheader --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz --targ /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/rh.crop.nii.gz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.rh.crop.nii.gz movvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz targvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/rh.crop.nii.gz outvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.rh.crop.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1759761976 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 32.00000; 0.00000 1.00000 0.00000 7.00000; 0.00000 0.00000 1.00000 11.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 56.00000; 0.00000 1.00000 0.00000 77.00000; 0.00000 0.00000 1.00000 95.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.rh.crop.nii.gz --left-right-reverse-pix /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.rh.crop.lrrev.nii.gz mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.rh.crop.nii.gz --left-right-reverse-pix /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.rh.crop.lrrev.nii.gz reading from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.rh.crop.nii.gz... WARNING: applying left-right reversal to the input pixels without changing geometry. This will likely make the volume geometry WRONG, so make sure you know what you are doing. Reversing pixels for the columns TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.rh.crop.lrrev.nii.gz... mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.rh.crop.lrrev.nii.gz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.lrrev.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.rh.crop.lrrev.nii.gz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.lrrev.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/dumca.lh.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 2 inshape (72, 72, 72) features 24 (None, 72, 72, 72, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 Segmenting image 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/invol.rh.crop.lrrev.nii.gz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 1s 1s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.lrrev.mgz vmpcma: 7319820 done mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.lrrev.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.mgz --left-right-swap-label-table /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/dumca.lh.index /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/dumca.rh.index --left-right-reverse-pix mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.lrrev.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.mgz --left-right-swap-label-table /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/dumca.lh.index /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/dumca.rh.index --left-right-reverse-pix reading from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.lrrev.mgz... Performing left-right swap of labels MRIlrswapSeg(): nswaps 591 WARNING: applying left-right reversal to the input pixels without changing geometry. This will likely make the volume geometry WRONG, so make sure you know what you are doing. Reversing pixels for the columns TR=2500.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.mgz... mri_vol2vol --regheader --interp nearest --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.mgz --targ /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.uncropped.mgz movvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.mgz targvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.uncropped.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1759825380 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -32.00000; 0.00000 1.00000 0.00000 -7.00000; 0.00000 0.00000 1.00000 -11.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -56.00000; 0.00000 1.00000 0.00000 -77.00000; 0.00000 0.00000 1.00000 -95.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_concat /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.lh.uncropped.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.mri_mcadura_seg.1841770/seg.rh.uncropped.mgz --sum --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/models/mca-dura.ctab --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/mca-dura.mgz ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing sum across frames Writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/mca-dura.mgz fsvglrun freeview -neuro-view --hide-3d-slices --view coronal /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/mca-dura.mgz:isosurface=1:outline=1 Started at Sun Sep 28 18:08:15 CDT 2025 Ended at Sun Sep 28 18:08:38 CDT 2025 mri_mcadura_seg-Run-Time-Sec 23 mri_mcadura_seg Done #-------------------------------------- #@# VSinus Segmentation Sun Sep 28 18:08:38 CDT 2025 mri_vsinus_seg --s sub-04P0G6LK_ses-00A --rca-synthseg --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm Sun Sep 28 18:08:38 CDT 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_vsinus_seg --s sub-04P0G6LK_ses-00A --rca-synthseg --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm -rwxr-x--- 1 root kdamme 20960 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_vsinus_seg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1845774 mri_vol2vol --mov /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz --lta /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --targ /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz Matrix from LTA: -1.06789 -0.02229 -0.04432 -2.79883; -0.03918 -0.13947 1.22268 -52.13263; 0.04338 -1.15649 -0.08434 -34.62364; 0.00000 0.00000 0.00000 1.00000; /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz movvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz targvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz regfile /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1759466808 Final tkRAS-to-tkRAS Matrix is: -1.06789 -0.02229 -0.04432 -2.79880; -0.03918 -0.13947 1.22269 -52.13270; 0.04338 -1.15649 -0.08434 -34.62363; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.06789 -0.04432 0.02229 238.80768; 0.04338 -0.08434 1.15649 6.33543; 0.03918 -1.22269 -0.13947 213.70804; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop 0 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz threshold mask volume at 0.001 cropping npad = 0 DoAbs = 0 Found 79013 voxels in mask (pct= 0.47) Computing bounding box, npad = 0, 0, 0, 0, 0, 0 65 25 16 129 118 85 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz...done. mri_binarize --crop-around-ras /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz nolta cras /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz 0 144 144 144 Getting cras from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz final ras2vox matrix -1.00000 -0.00000 -0.00000 128.50000; -0.00000 -0.00000 -1.00000 99.00000; -0.00000 1.00000 -0.00000 107.00000; -0.00000 -0.00000 -0.00000 1.00000; -------------------------- ostr LIA (144 144 144) (144 144 144) rasCenter -1 -48.5 15 crsCenter 129.5 84 58.5 MRIcropAroundCRS() vol size 256 256 256 center 129.5 84 58.5 fov 144 144 144 limits 59 202 13 156 -13 130 P0 69.5 -120 86 c_ras of new volume -2.5 -48 14 mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 --ctab /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab --keep_ac --conform --percentile 99.9 --vmp --output-base vsinus --logfile mri_vsinus_seg.log --fov 144 --threads 1 --no-cite-sclimbic --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 --ctab /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab --keep_ac --conform --percentile 99.9 --vmp --output-base vsinus --logfile mri_vsinus_seg.log --fov 144 --threads 1 --no-cite-sclimbic --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 6 inshape (144, 144, 144) features 24 (None, 144, 144, 144, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 Segmenting image 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 8s 8s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz vmpcma: 11232648 done mri_binarize --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/synthseg.rca.mgz --match 3 42 --inv --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri cmdline mri_binarize --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/synthseg.rca.mgz --match 3 42 --inv --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz sysname Linux hostname c-01-05 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/synthseg.rca.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz Binarizing based on matching values nMatch 2 0 3 1 42 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 586462 values in range Counting number of voxels in first frame Found 586462 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz Count: 586462 586462.000000 16777216 3.495586 mri_binarize done mri_vol2vol --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz --targ /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz --interp nearest --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/vsinus.mgz --regheader movvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz targvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/vsinus.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1759932131 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 3.00000; 0.00000 1.00000 0.00000 69.00000; 0.00000 0.00000 1.00000 -43.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -59.00000; 0.00000 1.00000 0.00000 -13.00000; 0.00000 0.00000 1.00000 13.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/vsinus.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/vsinus.mgz DoAbs = 0 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/vsinus.mgz...done. mri_segstats --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz --seg /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/vsinus.mgz --sum /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/vsinus.stats --subject sub-04P0G6LK_ses-00A --etiv 8.0.0 cwd cmdline mri_segstats --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz --seg /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/vsinus.mgz --sum /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/vsinus.stats --subject sub-04P0G6LK_ses-00A --etiv sysname Linux hostname c-01-05 machine x86_64 user dal247378 whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/vsinus.mgz Using embedded color table (and excluding seg 0) Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 6 segmentations Computing statistics for each segmentation Reporting on 5 segmentations Using PrintSegStat mri_segstats done fsvglrun freeview --hide-3d-slices --view coronal -neuro-view /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz:lock=1 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/vsinus.mgz:isosurface=1:outline=1 Started at Sun Sep 28 18:08:38 CDT 2025 Ended at Sun Sep 28 18:09:01 CDT 2025 Mri_Vsinus_Seg-Run-Time-Sec 23 Mri_Vsinus_Seg-Run-Time-Min 0.38 Mri_Vsinus_Seg-Run-Time-Hours 0.01 mri_vsinus_seg Done mri_mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/T1.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/synthstrip.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/brainmask.mgz DoAbs = 0 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/brainmask.mgz...done. #------------------------------------- #@# EM Registration Sun Sep 28 18:09:01 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca'... GCAread took 0 minutes and 1 seconds. average std = 7.2 using min determinant for regularization = 5.2 0 singular and 884 ill-conditioned covariance matrices regularized reading 'nu.mgz'... MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 5.9 or > 519.0 total sample mean = 79.1 (1017 zeros) ************************************************ spacing=8, using 2841 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2841, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=30.9 skull bounding box = (61, 40, 22) --> (199, 157, 176) finding center of left hemi white matter using (107, 79, 99) as brain centroid of Right_Cerebral_White_Matter... MRImask(): AllowDiffGeom = 1 mean wm in atlas = 107, using box (90,65,80) --> (123, 93,117) to find MRI wm before smoothing, mri peak at 108 robust fit to distribution - 107 +- 5.8 after smoothing, mri peak at 108, scaling input intensities by 0.991 scaling channel 0 by 0.990741 initial log_p = -4.538 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.005468 @ (-10.526, 10.526, 10.526) max log p = -3.840983 @ (5.263, 15.789, 5.263) max log p = -3.798329 @ (-2.632, -7.895, -2.632) max log p = -3.765182 @ (1.316, 1.316, 3.947) max log p = -3.765182 @ (0.000, 0.000, 0.000) max log p = -3.761260 @ (-0.329, 0.987, -0.329) max log p = -3.761260 @ (0.000, 0.000, 0.000) max log p = -3.761260 @ (0.000, 0.000, 0.000) Found translation: (-6.9, 20.7, 16.8): log p = -3.761 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.550, old_max_log_p =-3.761 (thresh=-3.8) 1.07500 0.00000 0.00000 -16.93616; 0.00000 1.15000 0.00000 5.93870; 0.00000 0.00000 1.06375 3.62522; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 44 seconds. **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.550, old_max_log_p =-3.550 (thresh=-3.5) 1.07500 0.00000 0.00000 -16.93616; 0.00000 1.15000 0.00000 5.93870; 0.00000 0.00000 1.06375 3.62522; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 iteration took 0 minutes and 43 seconds. **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.416, old_max_log_p =-3.550 (thresh=-3.5) 1.01421 0.04020 -0.03197 -7.95960; -0.03716 1.15523 0.17655 -4.50762; 0.03608 -0.19042 1.08878 18.92081; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 42 seconds. **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.416, old_max_log_p =-3.416 (thresh=-3.4) 1.01421 0.04020 -0.03197 -7.95960; -0.03716 1.15523 0.17655 -4.50762; 0.03608 -0.19042 1.08878 18.92081; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 iteration took 0 minutes and 42 seconds. **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.393, old_max_log_p =-3.416 (thresh=-3.4) 1.01706 0.02134 -0.03494 -6.22707; -0.02058 1.15708 0.17621 -6.84327; 0.03617 -0.19087 1.09133 18.71807; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 40 seconds. **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.381, old_max_log_p =-3.393 (thresh=-3.4) 1.01652 -0.00097 -0.02028 -6.27241; -0.00335 1.15800 0.19442 -11.82186; 0.01987 -0.21034 1.09000 22.88498; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 40 seconds. **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.374, old_max_log_p =-3.381 (thresh=-3.4) 1.01652 -0.00097 -0.02028 -6.27241; -0.00335 1.16071 0.19488 -12.12916; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 39 seconds. **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.374, old_max_log_p =-3.374 (thresh=-3.4) 1.01652 -0.00097 -0.02028 -6.27241; -0.00335 1.16071 0.19488 -12.12916; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2841 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.01652 -0.00097 -0.02028 -6.27241; -0.00335 1.16071 0.19488 -12.12916; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; nsamples 2841 Quasinewton: input matrix 1.01652 -0.00097 -0.02028 -6.27241; -0.00335 1.16071 0.19488 -12.12916; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 4 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.01652 -0.00097 -0.02028 -6.27241; -0.00335 1.16071 0.19488 -12.12916; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.374 (old=-4.538) transform before final EM align: 1.01652 -0.00097 -0.02028 -6.27241; -0.00335 1.16071 0.19488 -12.12916; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315638 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.01652 -0.00097 -0.02028 -6.27241; -0.00335 1.16071 0.19488 -12.12916; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; nsamples 315638 Quasinewton: input matrix 1.01652 -0.00097 -0.02028 -6.27241; -0.00335 1.16071 0.19488 -12.12916; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 012: -log(p) = 3.9 tol 0.000000 final transform: 1.01652 -0.00097 -0.02028 -6.27241; -0.00335 1.16071 0.19488 -12.12916; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... #VMPC# mri_em_register VmPeak 768344 FSRUNTIME@ mri_em_register 0.1004 hours 1 threads registration took 6 minutes and 1 seconds. #-------------------------------------- #@# CA Normalize Sun Sep 28 18:15:03 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/opt/ohpc/pub/apps/freesurfer/8.0.0/average/RB_all_2020-01-02.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=27.0 skull bounding box = (61, 40, 21) --> (200, 157, 176) finding center of left hemi white matter using (107, 79, 99) as brain centroid of Right_Cerebral_White_Matter... mean wm in atlas = 107, using box (90,65,80) --> (124, 93,118) to find MRI wm before smoothing, mri peak at 108 robust fit to distribution - 107 +- 5.9 after smoothing, mri peak at 108, scaling input intensities by 0.991 scaling channel 0 by 0.990741 using 246437 sample points... INFO: compute sample coordinates transform 1.01652 -0.00097 -0.02028 -6.27241; -0.00335 1.16071 0.19488 -12.12916; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (131, 41, 22) --> (197, 138, 173) Left_Cerebral_White_Matter: limiting intensities to 94.0 --> 132.0 0 of 202 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (69, 43, 22) --> (135, 139, 174) Right_Cerebral_White_Matter: limiting intensities to 95.0 --> 132.0 0 of 83 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (133, 115, 47) --> (181, 155, 96) Left_Cerebellum_White_Matter: limiting intensities to 101.0 --> 132.0 3 of 11 (27.3%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 115, 46) --> (132, 153, 98) Right_Cerebellum_White_Matter: limiting intensities to 93.0 --> 132.0 0 of 25 (0.0%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (116, 108, 81) --> (150, 166, 107) Brain_Stem: limiting intensities to 100.0 --> 132.0 5 of 11 (45.5%) samples deleted using 332 total control points for intensity normalization... bias field = 0.976 +- 0.078 0 of 324 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (131, 41, 22) --> (197, 138, 173) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 314 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (69, 43, 22) --> (135, 139, 174) Right_Cerebral_White_Matter: limiting intensities to 90.0 --> 132.0 0 of 189 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (133, 115, 47) --> (181, 155, 96) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 1 of 43 (2.3%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 115, 46) --> (132, 153, 98) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 1 of 50 (2.0%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (116, 108, 81) --> (150, 166, 107) Brain_Stem: limiting intensities to 88.0 --> 132.0 14 of 72 (19.4%) samples deleted using 668 total control points for intensity normalization... bias field = 1.005 +- 0.078 1 of 639 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (131, 41, 22) --> (197, 138, 173) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 388 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (69, 43, 22) --> (135, 139, 174) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 309 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (133, 115, 47) --> (181, 155, 96) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 39 of 98 (39.8%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 115, 46) --> (132, 153, 98) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 28 of 58 (48.3%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (116, 108, 81) --> (150, 166, 107) Brain_Stem: limiting intensities to 88.0 --> 132.0 37 of 98 (37.8%) samples deleted using 951 total control points for intensity normalization... bias field = 1.005 +- 0.060 2 of 837 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 0 minutes and 58 seconds. #-------------------------------------- #@# EntoWM Segmentation Sun Sep 28 18:16:00 CDT 2025 mri_entowm_seg --s sub-04P0G6LK_ses-00A --conform --threads 1 mri_sclimbic_seg --no-cite-sclimbic --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 --keep_ac --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.ctab --percentile 99.9 --vmp --output-base entowm --s sub-04P0G6LK_ses-00A --conform --threads 1 /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --no-cite-sclimbic --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 --keep_ac --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.ctab --percentile 99.9 --vmp --output-base entowm --s sub-04P0G6LK_ses-00A --conform --threads 1 Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 5 inshape (160, 160, 160) features 24 (None, 160, 160, 160, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 Using subject directory /scratch/juno/dal247378/batches/batch_012 Computed eTIV from talairach Segmenting subject sub-04P0G6LK_ses-00A 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/nu.mgz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 11s 11s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/entowm.mgz Wrote volume stats to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/entowm.stats vmpcma: 11264756 done Started at Sun Sep 28 18:16:00 CDT 2025 Started at Sun Sep 28 18:16:00 CDT 2025 Ended at Sun Sep 28 18:16:19 CDT 2025 Ended at Sun Sep 28 18:16:19 CDT 2025 mri_entowm_seg-Run-Time-Sec 19 mri_entowm_seg-Run-Time-Sec 19 mri_entowm_seg-Run-Time-Min 0.38 mri_entowm_seg-Run-Time-Min 0.38 mri_entowm_seg-Run-Time-Hours 0.01 mri_entowm_seg-Run-Time-Hours 0.01 mri_entowm_seg Done mri_entowm_seg Done 1 3006 651 670.9117 wm-lh-entorhinal 2 3201 218 225.3284 wm-lh-gyrus-ambiens 3 4006 909 930.0598 wm-rh-entorhinal 4 4201 279 287.6851 wm-rh-gyrus-ambiens #-------------------------------------- #@# CC Seg Sun Sep 28 18:16:19 CDT 2025 seg2cc --s sub-04P0G6LK_ses-00A Sun Sep 28 18:16:19 CDT 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/seg2cc --s sub-04P0G6LK_ses-00A freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a seg2cc 8.0.0 Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri IsConformed yes Sun Sep 28 18:16:20 CDT 2025 mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta transforms/cc_up.lta sub-04P0G6LK_ses-00A will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as transforms/cc_up.lta reading aseg from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/aseg.auto_noCCseg.mgz reading norm from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/norm.mgz 18282 voxels in left wm, 42051 in right wm, xrange [128, 135] searching rotation angles z=[-9 5], y=[-9 5] searching scale 1 Z rot -8.9 searching scale 1 Z rot -8.7 searching scale 1 Z rot -8.4 searching scale 1 Z rot -8.2 searching scale 1 Z rot -7.9 searching scale 1 Z rot -7.7 searching scale 1 Z rot -7.4 searching scale 1 Z rot -7.2 searching scale 1 Z rot -6.9 searching scale 1 Z rot -6.7 searching scale 1 Z rot -6.4 searching scale 1 Z rot -6.2 searching scale 1 Z rot -5.9 searching scale 1 Z rot -5.7 searching scale 1 Z rot -5.4 searching scale 1 Z rot -5.2 searching scale 1 Z rot -4.9 searching scale 1 Z rot -4.7 searching scale 1 Z rot -4.4 searching scale 1 Z rot -4.2 searching scale 1 Z rot -3.9 searching scale 1 Z rot -3.7 searching scale 1 Z rot -3.4 searching scale 1 Z rot -3.2 searching scale 1 Z rot -2.9 searching scale 1 Z rot -2.7 searching scale 1 Z rot -2.4 searching scale 1 Z rot -2.2 searching scale 1 Z rot -1.9 searching scale 1 Z rot -1.7 searching scale 1 Z rot -1.4 searching scale 1 Z rot -1.2 searching scale 1 Z rot -0.9 searching scale 1 Z rot -0.7 searching scale 1 Z rot -0.4 searching scale 1 Z rot -0.2 searching scale 1 Z rot 0.1 searching scale 1 Z rot 0.3 searching scale 1 Z rot 0.6 searching scale 1 Z rot 0.8 searching scale 1 Z rot 1.1 searching scale 1 Z rot 1.3 searching scale 1 Z rot 1.6 searching scale 1 Z rot 1.8 searching scale 1 Z rot 2.1 searching scale 1 Z rot 2.3 searching scale 1 Z rot 2.6 searching scale 1 Z rot 2.8 searching scale 1 Z rot 3.1 searching scale 1 Z rot 3.3 searching scale 1 Z rot 3.6 searching scale 1 Z rot 3.8 searching scale 1 Z rot 4.1 searching scale 1 Z rot 4.3 searching scale 1 Z rot 4.6 searching scale 1 Z rot 4.8 global minimum found at slice 132.5, rotations (-1.63, -1.93) final transformation (x=132.5, yr=-1.635, zr=-1.931): 0.99903 0.03370 -0.02851 -4.17715; -0.03368 0.99943 0.00096 50.40986; 0.02853 0.00000 0.99959 22.26294; 0.00000 0.00000 0.00000 1.00000; updating x range to be [126, 129] in xformed coordinates best xformed slice 128 min_x_fornix = 131 WARNING: min_x_fornix not set WARNING: min_x_fornix not set WARNING: min_x_fornix not set WARNING: min_x_fornix not set cc center is found at 128 82 102 eigenvectors: 0.00055 -0.01255 0.99992; 0.00712 -0.99990 -0.01255; 0.99997 0.00713 -0.00046; error in mid anterior detected - correcting... writing aseg with callosum to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/aseg.auto.mgz... corpus callosum segmentation took 0.3 minutes #VMPC# mri_cc VmPeak 431616 mri_cc done Sun Sep 28 18:16:36 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri Started at Sun Sep 28 18:16:19 CDT 2025 Ended at Sun Sep 28 18:16:36 CDT 2025 Seg2cc-Run-Time-Sec 17 Seg2cc-Run-Time-Hours 0.00 seg2cc Done #-------------------------------------- #@# Merge ASeg Sun Sep 28 18:16:36 CDT 2025 cp aseg.auto.mgz aseg.presurf.mgz #-------------------------------------------- #@# Intensity Normalization2 Sun Sep 28 18:16:36 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_normalize -seed 1234 -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading mri_src from norm.mgz... Reading aseg aseg.presurf.mgz aseg read with width 256 (src width 256) normalizing image... NOT doing gentle normalization with control points/label processing with aseg removing outliers in the aseg WM... 1959 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 68 (68), valley at 28 (28) csf peak at 34, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 68 (68), valley at 28 (28) csf peak at 35, setting threshold to 57 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 1 minutes and 39 seconds. #-------------------------------------------- #@# Mask BFS Sun Sep 28 18:18:16 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1413935 voxels in mask (pct= 8.43) maskval=0, outval=0 Writing masked volume to brain.finalsurfs.mgz...done. mri_mask -oval 1 -invert brain.finalsurfs.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/mca-dura.mgz brain.finalsurfs.mgz setting masked output voxels to 1.0 instead of 0 Inverting and binarizing mask thresh = 0.5 count 16776009 Resetting threshold to 0.5 DoAbs = 0 Found 16776009 voxels in mask (pct= 99.99) maskval=0, outval=1 Writing masked volume to brain.finalsurfs.mgz...done. mri_mask -oval 1 -invert brain.finalsurfs.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/vsinus.mgz brain.finalsurfs.mgz setting masked output voxels to 1.0 instead of 0 Inverting and binarizing mask thresh = 0.5 count 16768816 Resetting threshold to 0.5 DoAbs = 0 Found 16768816 voxels in mask (pct= 99.95) maskval=0, outval=1 Writing masked volume to brain.finalsurfs.mgz...done. mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 2 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 2 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz Fixing entowm 2 255 255 MRIfixEntoWM(): 255 255 Level=2 MRIfixEntoWM(): nchanged = 497 mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_wit supposed to be reproducible but seed not set LabelAmygalaCortalJunction((): nhits = 4093 Fixing ACJ 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 774 cp brain.finalsurfs.mgz brain.finalsurfs.manedit.mgz #-------------------------------------------- #@# WM Segmentation Sun Sep 28 18:18:20 CDT 2025 AntsDenoiseImageFs -i brain.mgz -o antsdn.brain.mgz mri_segment -wsizemm 13 -mprage antsdn.brain.mgz wm.seg.mgz wsizemm = 13, voxres = 1, wsize = 13 Widening wm low from 89 to 79 assuming input volume is MGH (Van der Kouwe) MP-RAGE wm mean: 110 wsize: 13 wm low: 79 wm hi: 125 gray low: 30 gray hi: 99 Doing initial trinary intensity segmentation MRIintensitySegmentation() wm_low=79, wm_hi=125, gray_hi=99 white = 317544, nonwhite = 16192063, ambig = 267609, nmask = 0 Using local statistics to label ambiguous voxels Autodetecting stats Computing class statistics for intensity windows... CCS WM (104.0): 103.7 +- 5.1 [79.0 --> 125.0] CCS GM (72.0) : 72.0 +- 8.7 [30.0 --> 95.0] white_mean 103.708 white_sigma 5.1317 gray_mean 72.048 gray_sigma 8.68374 setting bottom of white matter range wm_low to 80.7 setting top of gray matter range gray_hi to 89.4 wm_low 80.7317 wm_hi 125 gray_low 30 gray_hi 89.4155 Redoing initial intensity segmentation... MRIintensitySegmentation() wm_low=80.7317, wm_hi=125, gray_hi=89.4155 white = 431989, nonwhite = 16227269, ambig = 117958, nmask = 0 Recomputing local statistics to label ambiguous voxels... wm_low 80.7317 wm_hi 125 gray_low 30 gray_hi 89.4155 using local geometry to label remaining ambiguous voxels... polvwsize = 5, polvlen = 3, gray_hi = 89.4155, wm_low = 80.7317 MRIcpolvMedianCurveSegment(): wsize=5, len=3, gmhi=89.4155, wmlow=80.7317 112394 voxels processed (0.67%) 46035 voxels white (0.27%) 66359 voxels non-white (0.40%) Reclassifying voxels using Gaussian border classifier niter=1 MRIreclassify(): wm_low=75.7317, gray_hi=89.4155, wsize=13 215413 voxels tested (1.28%) 44592 voxels changed (0.27%) 51626 multi-scale searches (0.31%) Recovering bright white MRIrecoverBrightWhite() wm_low 80.7317 wm_hi 125 slack 5.1317 pct_thresh 0.33 intensity_thresh 130.132 nvox_thresh 8.58 12 voxels tested (0.00%) 11 voxels changed (0.00%) removing voxels with positive offset direction... MRIremoveWrongDirection() wsize=3, lowthr=75.7317, hithr=89.4155 smoothing input volume with sigma = 0.250 56515 voxels tested (0.34%) 12290 voxels changed (0.07%) thicken = 1 removing 1-dimensional structures... MRIremove1dStructures(): max_iter=10000, thresh=2, WM_MIN_VAL=5 4849 sparsely connected voxels removed in 1 iterations thickening thin strands.... thickness 4 nsegments 20 wm_hi 125 3361 diagonally connected voxels added... MRIthickenThinWMStrands(): thickness=4, nsegments=20 20 segments, 5768 filled MRIfindBrightNonWM(): 3 bright non-wm voxels segmented. MRIfilterMorphology() WM_MIN_VAL=5, DIAGONAL_FILL=230 white matter segmentation took 0.7 minutes writing output to wm.seg.mgz... mri_edit_wm_with_aseg -keep-in -fix-ento-wm entowm.mgz 3 255 255 -fix-acj aseg.presurf.mgz 255 255 -fill-seg-wm -fix-scm-ha 1 wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz mri_edit_wm_with_aseg -keep-in -fix-ento-wm entowm.mgz 3 255 255 -fix-acj aseg.presurf.mgz 255 255 -fill-seg-wm -fix-scm-ha 1 wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz preserving editing changes in input volume... mri_edit_wm_wit supposed to be reproducible but seed not set auto filling took 0.39 minutes Fixing entowm 3 255 255 LabelAmygalaCortalJunction((): nhits = 4093 Fixing ACJ 255 255 FixSCM HA 1 reading wm segmentation from wm.seg.mgz... 0 voxels added to wm to prevent paths from MTL structures to cortex 7002 additional wm voxels added 0 additional wm voxels added SEG EDIT: 220380 voxels turned on, 44046 voxels turned off. Dilating 1 voxels in 3d propagating editing to output volume from wm.seg.mgz MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 2057 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 774 writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 36 found - 36 modified | TOTAL: 36 pass 2 (xy+): 0 found - 36 modified | TOTAL: 36 pass 1 (xy-): 28 found - 28 modified | TOTAL: 64 pass 2 (xy-): 0 found - 28 modified | TOTAL: 64 pass 1 (yz+): 22 found - 22 modified | TOTAL: 86 pass 2 (yz+): 0 found - 22 modified | TOTAL: 86 pass 1 (yz-): 32 found - 32 modified | TOTAL: 118 pass 2 (yz-): 0 found - 32 modified | TOTAL: 118 pass 1 (xz+): 29 found - 29 modified | TOTAL: 147 pass 2 (xz+): 0 found - 29 modified | TOTAL: 147 pass 1 (xz-): 23 found - 23 modified | TOTAL: 170 pass 2 (xz-): 0 found - 23 modified | TOTAL: 170 Iteration Number : 1 pass 1 (+++): 10 found - 10 modified | TOTAL: 10 pass 2 (+++): 0 found - 10 modified | TOTAL: 10 pass 1 (+++): 17 found - 17 modified | TOTAL: 27 pass 2 (+++): 0 found - 17 modified | TOTAL: 27 pass 1 (+++): 14 found - 14 modified | TOTAL: 41 pass 2 (+++): 0 found - 14 modified | TOTAL: 41 pass 1 (+++): 10 found - 10 modified | TOTAL: 51 pass 2 (+++): 0 found - 10 modified | TOTAL: 51 Iteration Number : 1 pass 1 (++): 191 found - 191 modified | TOTAL: 191 pass 2 (++): 0 found - 191 modified | TOTAL: 191 pass 1 (+-): 191 found - 191 modified | TOTAL: 382 pass 2 (+-): 0 found - 191 modified | TOTAL: 382 pass 1 (--): 222 found - 222 modified | TOTAL: 604 pass 2 (--): 0 found - 222 modified | TOTAL: 604 pass 1 (-+): 195 found - 195 modified | TOTAL: 799 pass 2 (-+): 0 found - 195 modified | TOTAL: 799 Iteration Number : 2 pass 1 (xy+): 4 found - 4 modified | TOTAL: 4 pass 2 (xy+): 0 found - 4 modified | TOTAL: 4 pass 1 (xy-): 2 found - 2 modified | TOTAL: 6 pass 2 (xy-): 0 found - 2 modified | TOTAL: 6 pass 1 (yz+): 5 found - 5 modified | TOTAL: 11 pass 2 (yz+): 0 found - 5 modified | TOTAL: 11 pass 1 (yz-): 5 found - 5 modified | TOTAL: 16 pass 2 (yz-): 0 found - 5 modified | TOTAL: 16 pass 1 (xz+): 4 found - 4 modified | TOTAL: 20 pass 2 (xz+): 0 found - 4 modified | TOTAL: 20 pass 1 (xz-): 3 found - 3 modified | TOTAL: 23 pass 2 (xz-): 0 found - 3 modified | TOTAL: 23 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 1 found - 1 modified | TOTAL: 3 pass 2 (+++): 0 found - 1 modified | TOTAL: 3 Iteration Number : 2 pass 1 (++): 4 found - 4 modified | TOTAL: 4 pass 2 (++): 0 found - 4 modified | TOTAL: 4 pass 1 (+-): 1 found - 1 modified | TOTAL: 5 pass 2 (+-): 0 found - 1 modified | TOTAL: 5 pass 1 (--): 1 found - 1 modified | TOTAL: 6 pass 2 (--): 0 found - 1 modified | TOTAL: 6 pass 1 (-+): 1 found - 1 modified | TOTAL: 7 pass 2 (-+): 0 found - 1 modified | TOTAL: 7 Iteration Number : 3 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 0 found - 0 modified | TOTAL: 1 pass 1 (yz-): 1 found - 1 modified | TOTAL: 2 pass 2 (yz-): 0 found - 1 modified | TOTAL: 2 pass 1 (xz+): 0 found - 0 modified | TOTAL: 2 pass 1 (xz-): 0 found - 0 modified | TOTAL: 2 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 0 found - 0 modified | TOTAL: 1 pass 1 (--): 1 found - 1 modified | TOTAL: 2 pass 2 (--): 0 found - 1 modified | TOTAL: 2 pass 1 (-+): 1 found - 1 modified | TOTAL: 3 pass 2 (-+): 0 found - 1 modified | TOTAL: 3 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 1058 (out of 477815: 0.221425) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done Fixing entowm in wm.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 3 255 255 wm.mgz wm.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 3 255 255 wm.mgz wm.mgz Fixing entowm 3 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 2057 Fixing ACJ in wm.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 wm.mgz wm.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 wm.mgz wm.mgz mri_edit_wm_wit supposed to be reproducible but seed not set LabelAmygalaCortalJunction((): nhits = 4093 Fixing ACJ 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 774 #-------------------------------------------- #@# Fill Sun Sep 28 18:19:50 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.presurf.mgz -ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/SubCorticalMassLUT.txt wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.presurf.mgz... done. searching for cutting planes...voxel to talairach voxel transform 1.01652 -0.00097 -0.02028 -6.27240; -0.00335 1.16071 0.19488 -12.12918; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; reading input volume... wm.mgzvoxel to talairach voxel transform 1.01652 -0.00097 -0.02028 -6.27240; -0.00335 1.16071 0.19488 -12.12918; 0.01983 -0.20985 1.08745 23.07843; 0.00000 0.00000 0.00000 1.00000; reading segmented volume aseg.presurf.mgz removing CC from segmentation Looking for area (min, max) = (350, 1400) area[0] = 2589 (min = 350, max = 1400), aspect = 1.09 (min = 0.10, max = 0.75) need search nearby using seed (126, 122, 148), TAL = (2.0, 20.0, 6.0) talairach voxel to voxel transform 0.98342 0.00401 0.01762 5.81042; 0.00567 0.83452 -0.14944 13.60658; -0.01684 0.16097 0.89042 -18.70277; 0.00000 0.00000 0.00000 1.00000; segmentation indicates cc at (126, 122, 148) --> (2.0, 20.0, 6.0) done. filling took 0.5 minutes talairach cc position changed to (2.00, 20.00, 6.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(20.00, 20.00, 6.00) SRC: (115.12, 93.91, 130.90) search lh wm seed point around talairach space (-16.00, 20.00, 6.00), SRC: (150.52, 94.12, 130.29) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram for separating WM into two hemispheres ... Find the largest connected component for each hemisphere ... Embedding colortable mri_fill done, writing output to filled.mgz... cp filled.mgz filled.auto.mgz #-------------------------------------------- #@# Tessellate lh Sun Sep 28 18:20:22 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 6 found - 6 modified | TOTAL: 6 pass 2 (xy+): 0 found - 6 modified | TOTAL: 6 pass 1 (xy-): 2 found - 2 modified | TOTAL: 8 pass 2 (xy-): 0 found - 2 modified | TOTAL: 8 pass 1 (yz+): 11 found - 11 modified | TOTAL: 19 pass 2 (yz+): 0 found - 11 modified | TOTAL: 19 pass 1 (yz-): 10 found - 10 modified | TOTAL: 29 pass 2 (yz-): 0 found - 10 modified | TOTAL: 29 pass 1 (xz+): 2 found - 2 modified | TOTAL: 31 pass 2 (xz+): 0 found - 2 modified | TOTAL: 31 pass 1 (xz-): 2 found - 2 modified | TOTAL: 33 pass 2 (xz-): 0 found - 2 modified | TOTAL: 33 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 2 found - 2 modified | TOTAL: 2 pass 2 (+-): 0 found - 2 modified | TOTAL: 2 pass 1 (--): 2 found - 2 modified | TOTAL: 4 pass 2 (--): 0 found - 2 modified | TOTAL: 4 pass 1 (-+): 1 found - 1 modified | TOTAL: 5 pass 2 (-+): 0 found - 1 modified | TOTAL: 5 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 38 (out of 233025: 0.016307) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix 8.0.0 8.0.0 slice 30: 3622 vertices, 3829 faces slice 40: 11165 vertices, 11489 faces slice 50: 20913 vertices, 21261 faces slice 60: 31316 vertices, 31708 faces slice 70: 43212 vertices, 43579 faces slice 80: 55262 vertices, 55684 faces slice 90: 67408 vertices, 67800 faces slice 100: 79256 vertices, 79650 faces slice 110: 91117 vertices, 91547 faces slice 120: 102313 vertices, 102693 faces slice 130: 111220 vertices, 111539 faces slice 140: 118670 vertices, 118916 faces slice 150: 125306 vertices, 125589 faces slice 160: 130523 vertices, 130722 faces slice 170: 134030 vertices, 134126 faces slice 180: 134284 vertices, 134326 faces slice 190: 134284 vertices, 134326 faces slice 200: 134284 vertices, 134326 faces slice 210: 134284 vertices, 134326 faces slice 220: 134284 vertices, 134326 faces slice 230: 134284 vertices, 134326 faces slice 240: 134284 vertices, 134326 faces slice 250: 134284 vertices, 134326 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 134284 voxel in cpt #1: X=-42 [v=134284,e=402978,f=268652] located at (-32.654652, -37.771439, 35.726990) For the whole surface: X=-42 [v=134284,e=402978,f=268652] One single component has been found nothing to do done #-------------------------------------------- #@# Tessellate rh Sun Sep 28 18:20:25 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 11 found - 11 modified | TOTAL: 12 pass 2 (yz+): 0 found - 11 modified | TOTAL: 12 pass 1 (yz-): 5 found - 5 modified | TOTAL: 17 pass 2 (yz-): 0 found - 5 modified | TOTAL: 17 pass 1 (xz+): 3 found - 3 modified | TOTAL: 20 pass 2 (xz+): 0 found - 3 modified | TOTAL: 20 pass 1 (xz-): 2 found - 2 modified | TOTAL: 22 pass 2 (xz-): 0 found - 2 modified | TOTAL: 22 Iteration Number : 1 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 1 found - 1 modified | TOTAL: 1 pass 2 (yz-): 0 found - 1 modified | TOTAL: 1 pass 1 (xz+): 1 found - 1 modified | TOTAL: 2 pass 2 (xz+): 0 found - 1 modified | TOTAL: 2 pass 1 (xz-): 0 found - 0 modified | TOTAL: 2 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 2 found - 2 modified | TOTAL: 2 pass 2 (--): 0 found - 2 modified | TOTAL: 2 pass 1 (-+): 0 found - 0 modified | TOTAL: 2 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 28 (out of 228382: 0.012260) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix 8.0.0 8.0.0 slice 30: 1516 vertices, 1674 faces slice 40: 7425 vertices, 7653 faces slice 50: 15962 vertices, 16298 faces slice 60: 26568 vertices, 26985 faces slice 70: 38452 vertices, 38842 faces slice 80: 50466 vertices, 50840 faces slice 90: 62832 vertices, 63253 faces slice 100: 75071 vertices, 75488 faces slice 110: 86949 vertices, 87332 faces slice 120: 99024 vertices, 99406 faces slice 130: 107722 vertices, 108035 faces slice 140: 115305 vertices, 115595 faces slice 150: 122353 vertices, 122631 faces slice 160: 128145 vertices, 128377 faces slice 170: 131963 vertices, 132108 faces slice 180: 132554 vertices, 132594 faces slice 190: 132554 vertices, 132594 faces slice 200: 132554 vertices, 132594 faces slice 210: 132554 vertices, 132594 faces slice 220: 132554 vertices, 132594 faces slice 230: 132554 vertices, 132594 faces slice 240: 132554 vertices, 132594 faces slice 250: 132554 vertices, 132594 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 132554 voxel in cpt #1: X=-40 [v=132554,e=397782,f=265188] located at (24.616926, -34.696003, 38.483540) For the whole surface: X=-40 [v=132554,e=397782,f=265188] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 lh Sun Sep 28 18:20:27 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Smooth1 rh Sun Sep 28 18:20:29 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Sun Sep 28 18:20:31 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix Not saving sulc Reading ../surf/lh.smoothwm.nofix avg radius = 44.4 mm, total surface area = 71436 mm^2 step 000: RMS=0.154 (target=0.015) step 005: RMS=0.117 (target=0.015) step 010: RMS=0.087 (target=0.015) step 015: RMS=0.073 (target=0.015) step 020: RMS=0.063 (target=0.015) step 025: RMS=0.055 (target=0.015) step 030: RMS=0.049 (target=0.015) step 035: RMS=0.045 (target=0.015) step 040: RMS=0.041 (target=0.015) step 045: RMS=0.039 (target=0.015) step 050: RMS=0.036 (target=0.015) step 055: RMS=0.035 (target=0.015) step 060: RMS=0.035 (target=0.015) writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.2 minutes inflation complete. Not saving sulc mris_inflate utimesec 12.417586 mris_inflate stimesec 0.732971 mris_inflate ru_maxrss 214652 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 459841 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 9448 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 139 mris_inflate ru_nivcsw 23 #-------------------------------------------- #@# Inflation1 rh Sun Sep 28 18:20:45 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 43.9 mm, total surface area = 70778 mm^2 step 000: RMS=0.151 (target=0.015) step 005: RMS=0.116 (target=0.015) step 010: RMS=0.086 (target=0.015) step 015: RMS=0.072 (target=0.015) step 020: RMS=0.062 (target=0.015) step 025: RMS=0.054 (target=0.015) step 030: RMS=0.048 (target=0.015) step 035: RMS=0.044 (target=0.015) step 040: RMS=0.041 (target=0.015) step 045: RMS=0.038 (target=0.015) step 050: RMS=0.036 (target=0.015) step 055: RMS=0.035 (target=0.015) step 060: RMS=0.035 (target=0.015) writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.2 minutes inflation complete. Not saving sulc mris_inflate utimesec 12.461827 mris_inflate stimesec 0.630450 mris_inflate ru_maxrss 212096 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 372362 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 9328 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 139 mris_inflate ru_nivcsw 24 #-------------------------------------------- #@# QSphere lh Sun Sep 28 18:20:58 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 scaling brain by 0.321... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 1.01 +- 0.57 (0.00-->10.15) (max @ vno 49511 --> 49512) face area 0.03 +- 0.03 (-0.40-->1.08) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.160, avgs=0 005/300: dt: 0.9000, rms radial error=175.903, avgs=0 010/300: dt: 0.9000, rms radial error=175.351, avgs=0 015/300: dt: 0.9000, rms radial error=174.626, avgs=0 020/300: dt: 0.9000, rms radial error=173.800, avgs=0 025/300: dt: 0.9000, rms radial error=172.915, avgs=0 030/300: dt: 0.9000, rms radial error=171.998, avgs=0 035/300: dt: 0.9000, rms radial error=171.064, avgs=0 040/300: dt: 0.9000, rms radial error=170.123, avgs=0 045/300: dt: 0.9000, rms radial error=169.180, avgs=0 050/300: dt: 0.9000, rms radial error=168.237, avgs=0 055/300: dt: 0.9000, rms radial error=167.297, avgs=0 060/300: dt: 0.9000, rms radial error=166.360, avgs=0 065/300: dt: 0.9000, rms radial error=165.428, avgs=0 070/300: dt: 0.9000, rms radial error=164.501, avgs=0 075/300: dt: 0.9000, rms radial error=163.578, avgs=0 080/300: dt: 0.9000, rms radial error=162.660, avgs=0 085/300: dt: 0.9000, rms radial error=161.747, avgs=0 090/300: dt: 0.9000, rms radial error=160.839, avgs=0 095/300: dt: 0.9000, rms radial error=159.935, avgs=0 100/300: dt: 0.9000, rms radial error=159.037, avgs=0 105/300: dt: 0.9000, rms radial error=158.143, avgs=0 110/300: dt: 0.9000, rms radial error=157.254, avgs=0 115/300: dt: 0.9000, rms radial error=156.370, avgs=0 120/300: dt: 0.9000, rms radial error=155.491, avgs=0 125/300: dt: 0.9000, rms radial error=154.616, avgs=0 130/300: dt: 0.9000, rms radial error=153.747, avgs=0 135/300: dt: 0.9000, rms radial error=152.882, avgs=0 140/300: dt: 0.9000, rms radial error=152.022, avgs=0 145/300: dt: 0.9000, rms radial error=151.167, avgs=0 150/300: dt: 0.9000, rms radial error=150.316, avgs=0 155/300: dt: 0.9000, rms radial error=149.470, avgs=0 160/300: dt: 0.9000, rms radial error=148.629, avgs=0 165/300: dt: 0.9000, rms radial error=147.792, avgs=0 170/300: dt: 0.9000, rms radial error=146.960, avgs=0 175/300: dt: 0.9000, rms radial error=146.133, avgs=0 180/300: dt: 0.9000, rms radial error=145.310, avgs=0 185/300: dt: 0.9000, rms radial error=144.491, avgs=0 190/300: dt: 0.9000, rms radial error=143.677, avgs=0 195/300: dt: 0.9000, rms radial error=142.868, avgs=0 200/300: dt: 0.9000, rms radial error=142.063, avgs=0 205/300: dt: 0.9000, rms radial error=141.262, avgs=0 210/300: dt: 0.9000, rms radial error=140.466, avgs=0 215/300: dt: 0.9000, rms radial error=139.674, avgs=0 220/300: dt: 0.9000, rms radial error=138.887, avgs=0 225/300: dt: 0.9000, rms radial error=138.104, avgs=0 230/300: dt: 0.9000, rms radial error=137.326, avgs=0 235/300: dt: 0.9000, rms radial error=136.552, avgs=0 240/300: dt: 0.9000, rms radial error=135.782, avgs=0 245/300: dt: 0.9000, rms radial error=135.017, avgs=0 250/300: dt: 0.9000, rms radial error=134.255, avgs=0 255/300: dt: 0.9000, rms radial error=133.498, avgs=0 260/300: dt: 0.9000, rms radial error=132.745, avgs=0 265/300: dt: 0.9000, rms radial error=131.997, avgs=0 270/300: dt: 0.9000, rms radial error=131.253, avgs=0 275/300: dt: 0.9000, rms radial error=130.512, avgs=0 280/300: dt: 0.9000, rms radial error=129.776, avgs=0 285/300: dt: 0.9000, rms radial error=129.044, avgs=0 290/300: dt: 0.9000, rms radial error=128.316, avgs=0 295/300: dt: 0.9000, rms radial error=127.593, avgs=0 300/300: dt: 0.9000, rms radial error=126.873, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 15514.70 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/13 = 0.00026 epoch 2 (K=40.0), pass 1, starting sse = 2469.89 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00053 epoch 3 (K=160.0), pass 1, starting sse = 212.56 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.05/13 = 0.00407 epoch 4 (K=640.0), pass 1, starting sse = 13.87 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.10/16 = 0.00637 final distance error %100000.00 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.0203 hours FSRUNTIME@ mris_sphere 0.0203 hours 1 threads #VMPC# mris_sphere VmPeak 469104 mris_sphere done #-------------------------------------------- #@# QSphere rh Sun Sep 28 18:22:11 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 scaling brain by 0.324... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 1.02 +- 0.55 (0.00-->6.82) (max @ vno 52637 --> 53907) face area 0.03 +- 0.03 (-0.23-->0.70) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.091, avgs=0 005/300: dt: 0.9000, rms radial error=175.832, avgs=0 010/300: dt: 0.9000, rms radial error=175.277, avgs=0 015/300: dt: 0.9000, rms radial error=174.548, avgs=0 020/300: dt: 0.9000, rms radial error=173.718, avgs=0 025/300: dt: 0.9000, rms radial error=172.830, avgs=0 030/300: dt: 0.9000, rms radial error=171.910, avgs=0 035/300: dt: 0.9000, rms radial error=170.973, avgs=0 040/300: dt: 0.9000, rms radial error=170.028, avgs=0 045/300: dt: 0.9000, rms radial error=169.080, avgs=0 050/300: dt: 0.9000, rms radial error=168.132, avgs=0 055/300: dt: 0.9000, rms radial error=167.193, avgs=0 060/300: dt: 0.9000, rms radial error=166.258, avgs=0 065/300: dt: 0.9000, rms radial error=165.326, avgs=0 070/300: dt: 0.9000, rms radial error=164.400, avgs=0 075/300: dt: 0.9000, rms radial error=163.478, avgs=0 080/300: dt: 0.9000, rms radial error=162.561, avgs=0 085/300: dt: 0.9000, rms radial error=161.648, avgs=0 090/300: dt: 0.9000, rms radial error=160.741, avgs=0 095/300: dt: 0.9000, rms radial error=159.839, avgs=0 100/300: dt: 0.9000, rms radial error=158.942, avgs=0 105/300: dt: 0.9000, rms radial error=158.050, avgs=0 110/300: dt: 0.9000, rms radial error=157.162, avgs=0 115/300: dt: 0.9000, rms radial error=156.280, avgs=0 120/300: dt: 0.9000, rms radial error=155.402, avgs=0 125/300: dt: 0.9000, rms radial error=154.529, avgs=0 130/300: dt: 0.9000, rms radial error=153.661, avgs=0 135/300: dt: 0.9000, rms radial error=152.797, avgs=0 140/300: dt: 0.9000, rms radial error=151.938, avgs=0 145/300: dt: 0.9000, rms radial error=151.084, avgs=0 150/300: dt: 0.9000, rms radial error=150.234, avgs=0 155/300: dt: 0.9000, rms radial error=149.390, avgs=0 160/300: dt: 0.9000, rms radial error=148.550, avgs=0 165/300: dt: 0.9000, rms radial error=147.714, avgs=0 170/300: dt: 0.9000, rms radial error=146.883, avgs=0 175/300: dt: 0.9000, rms radial error=146.057, avgs=0 180/300: dt: 0.9000, rms radial error=145.236, avgs=0 185/300: dt: 0.9000, rms radial error=144.419, avgs=0 190/300: dt: 0.9000, rms radial error=143.606, avgs=0 195/300: dt: 0.9000, rms radial error=142.798, avgs=0 200/300: dt: 0.9000, rms radial error=141.994, avgs=0 205/300: dt: 0.9000, rms radial error=141.196, avgs=0 210/300: dt: 0.9000, rms radial error=140.401, avgs=0 215/300: dt: 0.9000, rms radial error=139.612, avgs=0 220/300: dt: 0.9000, rms radial error=138.826, avgs=0 225/300: dt: 0.9000, rms radial error=138.045, avgs=0 230/300: dt: 0.9000, rms radial error=137.268, avgs=0 235/300: dt: 0.9000, rms radial error=136.495, avgs=0 240/300: dt: 0.9000, rms radial error=135.727, avgs=0 245/300: dt: 0.9000, rms radial error=134.963, avgs=0 250/300: dt: 0.9000, rms radial error=134.203, avgs=0 255/300: dt: 0.9000, rms radial error=133.448, avgs=0 260/300: dt: 0.9000, rms radial error=132.696, avgs=0 265/300: dt: 0.9000, rms radial error=131.949, avgs=0 270/300: dt: 0.9000, rms radial error=131.206, avgs=0 275/300: dt: 0.9000, rms radial error=130.467, avgs=0 280/300: dt: 0.9000, rms radial error=129.732, avgs=0 285/300: dt: 0.9000, rms radial error=129.002, avgs=0 290/300: dt: 0.9000, rms radial error=128.275, avgs=0 295/300: dt: 0.9000, rms radial error=127.552, avgs=0 300/300: dt: 0.9000, rms radial error=126.834, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 15225.34 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00042 epoch 2 (K=40.0), pass 1, starting sse = 2348.67 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/13 = 0.00018 epoch 3 (K=160.0), pass 1, starting sse = 201.57 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.14/17 = 0.00853 epoch 4 (K=640.0), pass 1, starting sse = 10.33 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.11/21 = 0.00505 final distance error %100000.00 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.0222 hours FSRUNTIME@ mris_sphere 0.0222 hours 1 threads #VMPC# mris_sphere VmPeak 466320 mris_sphere done #@# Fix Topology lh Sun Sep 28 18:23:31 CDT 2025 mris_fix_topology -threads 1 -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 -threads 1 sub-04P0G6LK_ses-00A lh Setting OMP_NUM_THREADS=1 reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 Setting OMP_NUM_THREADS=1 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 8.0.0 8.0.0 before topology correction, eno=-42 (nv=134284, nf=268652, ne=402978, g=22) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 8 iterations marking ambiguous vertices... 5550 ambiguous faces found in tessellation segmenting defects... 22 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 0 into 4 -merging segment 9 into 8 20 defects to be corrected 0 vertices coincident reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.8352 (-4.9176) -vertex loglikelihood: -6.7193 (-3.3596) -normal dot loglikelihood: -3.6014 (-3.6014) -quad curv loglikelihood: -6.1718 (-3.0859) Total Loglikelihood : -26.3277 CORRECTING DEFECT 0 (vertices=392, convex hull=175, v0=517) After retessellation of defect 0 (v0=517), euler #=-17 (131175,392600,261408) : difference with theory (-17) = 0 CORRECTING DEFECT 1 (vertices=392, convex hull=217, v0=939) After retessellation of defect 1 (v0=939), euler #=-16 (131277,393017,261724) : difference with theory (-16) = 0 CORRECTING DEFECT 2 (vertices=30, convex hull=34, v0=1675) After retessellation of defect 2 (v0=1675), euler #=-15 (131278,393032,261739) : difference with theory (-15) = 0 CORRECTING DEFECT 3 (vertices=997, convex hull=321, v0=6717) After retessellation of defect 3 (v0=6717), euler #=-13 (131401,393569,262155) : difference with theory (-14) = -1 CORRECTING DEFECT 4 (vertices=134, convex hull=135, v0=47116) After retessellation of defect 4 (v0=47116), euler #=-12 (131457,393799,262330) : difference with theory (-13) = -1 CORRECTING DEFECT 5 (vertices=7, convex hull=29, v0=48313) After retessellation of defect 5 (v0=48313), euler #=-11 (131461,393818,262346) : difference with theory (-12) = -1 CORRECTING DEFECT 6 (vertices=6, convex hull=38, v0=52363) After retessellation of defect 6 (v0=52363), euler #=-10 (131464,393838,262364) : difference with theory (-11) = -1 CORRECTING DEFECT 7 (vertices=387, convex hull=366, v0=63839) After retessellation of defect 7 (v0=63839), euler #=-8 (131563,394312,262741) : difference with theory (-10) = -2 CORRECTING DEFECT 8 (vertices=167, convex hull=202, v0=94172) After retessellation of defect 8 (v0=94172), euler #=-7 (131636,394620,262977) : difference with theory (-9) = -2 CORRECTING DEFECT 9 (vertices=268, convex hull=62, v0=97489) After retessellation of defect 9 (v0=97489), euler #=-6 (131651,394690,263033) : difference with theory (-8) = -2 CORRECTING DEFECT 10 (vertices=25, convex hull=44, v0=100860) After retessellation of defect 10 (v0=100860), euler #=-6 (131663,394749,263080) : difference with theory (-7) = -1 CORRECTING DEFECT 11 (vertices=47, convex hull=76, v0=102272) After retessellation of defect 11 (v0=102272), euler #=-5 (131694,394874,263175) : difference with theory (-6) = -1 CORRECTING DEFECT 12 (vertices=139, convex hull=115, v0=104023) After retessellation of defect 12 (v0=104023), euler #=-5 (131751,395103,263347) : difference with theory (-5) = 0 CORRECTING DEFECT 13 (vertices=20, convex hull=76, v0=118901) After retessellation of defect 13 (v0=118901), euler #=-4 (131761,395159,263394) : difference with theory (-4) = 0 CORRECTING DEFECT 14 (vertices=24, convex hull=21, v0=123206) After retessellation of defect 14 (v0=123206), euler #=-3 (131762,395168,263403) : difference with theory (-3) = 0 CORRECTING DEFECT 15 (vertices=39, convex hull=60, v0=123890) After retessellation of defect 15 (v0=123890), euler #=-2 (131780,395243,263461) : difference with theory (-2) = 0 CORRECTING DEFECT 16 (vertices=34, convex hull=58, v0=129056) After retessellation of defect 16 (v0=129056), euler #=-1 (131794,395308,263513) : difference with theory (-1) = 0 CORRECTING DEFECT 17 (vertices=28, convex hull=36, v0=131201) After retessellation of defect 17 (v0=131201), euler #=0 (131798,395334,263536) : difference with theory (0) = 0 CORRECTING DEFECT 18 (vertices=26, convex hull=56, v0=133133) After retessellation of defect 18 (v0=133133), euler #=1 (131812,395399,263588) : difference with theory (1) = 0 CORRECTING DEFECT 19 (vertices=54, convex hull=75, v0=133599) After retessellation of defect 19 (v0=133599), euler #=2 (131830,395484,263656) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.23 (0.10-->14.96) (max @ vno 1089 --> 7303) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.23 (0.10-->14.96) (max @ vno 1089 --> 7303) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 65 mutations (32.8%), 133 crossovers (67.2%), 178 vertices were eliminated building final representation... 2454 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=131830, nf=263656, ne=395484, g=0) writing corrected surface to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 212 intersecting 001: 27 intersecting 002: 2 intersecting terminating search with 0 intersecting topology fixing took 1.8 minutes FSRUNTIME@ mris_fix_topology lh 0.0296 hours 1 threads #VMPC# mris_fix_topology VmPeak 748548 #@# Fix Topology rh Sun Sep 28 18:25:17 CDT 2025 mris_fix_topology -threads 1 -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 -threads 1 sub-04P0G6LK_ses-00A rh Setting OMP_NUM_THREADS=1 reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 Setting OMP_NUM_THREADS=1 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 8.0.0 8.0.0 before topology correction, eno=-40 (nv=132554, nf=265188, ne=397782, g=21) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 8 iterations marking ambiguous vertices... 4054 ambiguous faces found in tessellation segmenting defects... 25 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 13 into 9 24 defects to be corrected 0 vertices coincident reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.8643 (-4.9321) -vertex loglikelihood: -6.6986 (-3.3493) -normal dot loglikelihood: -3.6344 (-3.6344) -quad curv loglikelihood: -5.9421 (-2.9710) Total Loglikelihood : -26.1394 CORRECTING DEFECT 0 (vertices=979, convex hull=333, v0=157) After retessellation of defect 0 (v0=157), euler #=-22 (130298,390229,259909) : difference with theory (-21) = 1 CORRECTING DEFECT 1 (vertices=107, convex hull=103, v0=615) After retessellation of defect 1 (v0=615), euler #=-21 (130328,390363,260014) : difference with theory (-20) = 1 CORRECTING DEFECT 2 (vertices=211, convex hull=242, v0=16631) After retessellation of defect 2 (v0=16631), euler #=-20 (130439,390822,260363) : difference with theory (-19) = 1 CORRECTING DEFECT 3 (vertices=243, convex hull=164, v0=46420) After retessellation of defect 3 (v0=46420), euler #=-19 (130462,390969,260488) : difference with theory (-18) = 1 CORRECTING DEFECT 4 (vertices=16, convex hull=28, v0=56173) After retessellation of defect 4 (v0=56173), euler #=-18 (130465,390985,260502) : difference with theory (-17) = 1 CORRECTING DEFECT 5 (vertices=7, convex hull=16, v0=66274) After retessellation of defect 5 (v0=66274), euler #=-17 (130466,390991,260508) : difference with theory (-16) = 1 CORRECTING DEFECT 6 (vertices=22, convex hull=48, v0=78482) After retessellation of defect 6 (v0=78482), euler #=-16 (130478,391046,260552) : difference with theory (-15) = 1 CORRECTING DEFECT 7 (vertices=7, convex hull=31, v0=82495) After retessellation of defect 7 (v0=82495), euler #=-15 (130480,391061,260566) : difference with theory (-14) = 1 CORRECTING DEFECT 8 (vertices=8, convex hull=28, v0=85642) After retessellation of defect 8 (v0=85642), euler #=-14 (130482,391075,260579) : difference with theory (-13) = 1 CORRECTING DEFECT 9 (vertices=281, convex hull=170, v0=86509) After retessellation of defect 9 (v0=86509), euler #=-12 (130513,391249,260724) : difference with theory (-12) = 0 CORRECTING DEFECT 10 (vertices=49, convex hull=82, v0=87971) After retessellation of defect 10 (v0=87971), euler #=-11 (130531,391336,260794) : difference with theory (-11) = 0 CORRECTING DEFECT 11 (vertices=61, convex hull=36, v0=90272) After retessellation of defect 11 (v0=90272), euler #=-10 (130542,391382,260830) : difference with theory (-10) = 0 CORRECTING DEFECT 12 (vertices=28, convex hull=66, v0=93887) After retessellation of defect 12 (v0=93887), euler #=-9 (130552,391438,260877) : difference with theory (-9) = 0 CORRECTING DEFECT 13 (vertices=61, convex hull=61, v0=96452) After retessellation of defect 13 (v0=96452), euler #=-8 (130561,391493,260924) : difference with theory (-8) = 0 CORRECTING DEFECT 14 (vertices=16, convex hull=39, v0=103005) After retessellation of defect 14 (v0=103005), euler #=-7 (130570,391535,260958) : difference with theory (-7) = 0 CORRECTING DEFECT 15 (vertices=16, convex hull=54, v0=107600) After retessellation of defect 15 (v0=107600), euler #=-6 (130579,391582,260997) : difference with theory (-6) = 0 CORRECTING DEFECT 16 (vertices=63, convex hull=60, v0=113003) After retessellation of defect 16 (v0=113003), euler #=-5 (130597,391659,261057) : difference with theory (-5) = 0 CORRECTING DEFECT 17 (vertices=39, convex hull=78, v0=119601) After retessellation of defect 17 (v0=119601), euler #=-4 (130621,391766,261141) : difference with theory (-4) = 0 CORRECTING DEFECT 18 (vertices=17, convex hull=41, v0=124094) After retessellation of defect 18 (v0=124094), euler #=-3 (130629,391804,261172) : difference with theory (-3) = 0 CORRECTING DEFECT 19 (vertices=66, convex hull=75, v0=128781) After retessellation of defect 19 (v0=128781), euler #=-2 (130646,391887,261239) : difference with theory (-2) = 0 CORRECTING DEFECT 20 (vertices=53, convex hull=44, v0=130315) After retessellation of defect 20 (v0=130315), euler #=-1 (130656,391935,261278) : difference with theory (-1) = 0 CORRECTING DEFECT 21 (vertices=11, convex hull=28, v0=131739) After retessellation of defect 21 (v0=131739), euler #=0 (130659,391955,261296) : difference with theory (0) = 0 CORRECTING DEFECT 22 (vertices=12, convex hull=26, v0=132063) After retessellation of defect 22 (v0=132063), euler #=1 (130661,391970,261310) : difference with theory (1) = 0 CORRECTING DEFECT 23 (vertices=19, convex hull=20, v0=132334) After retessellation of defect 23 (v0=132334), euler #=2 (130664,391986,261324) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.23 (0.13-->11.87) (max @ vno 46398 --> 49926) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.23 (0.13-->11.87) (max @ vno 46398 --> 49926) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 108 mutations (36.0%), 192 crossovers (64.0%), 199 vertices were eliminated building final representation... 1890 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=130664, nf=261324, ne=391986, g=0) writing corrected surface to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 247 intersecting 001: 21 intersecting 002: 5 intersecting terminating search with 0 intersecting topology fixing took 1.8 minutes FSRUNTIME@ mris_fix_topology rh 0.0292 hours 1 threads #VMPC# mris_fix_topology VmPeak 746736 mris_euler_number ../surf/lh.orig.premesh euler # = v-e+f = 2g-2: 131830 - 395484 + 263656 = 2 --> 0 holes F =2V-4: 263656 = 263660-4 (0) 2E=3F: 790968 = 790968 (0) total defect index = 0 mris_euler_number ../surf/rh.orig.premesh euler # = v-e+f = 2g-2: 130664 - 391986 + 261324 = 2 --> 0 holes F =2V-4: 261324 = 261328-4 (0) 2E=3F: 783972 = 783972 (0) total defect index = 0 Sun Sep 28 18:27:03 CDT 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/defect2seg --s sub-04P0G6LK_ses-00A --cortex freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a defect2seg 8.0.0 Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1869245 mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.orig.nofix /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.nofix.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 15 non-cortical segments detected only using segment with 7137 vertices erasing segment 1 (vno[0] = 68978) erasing segment 2 (vno[0] = 74327) erasing segment 3 (vno[0] = 74346) erasing segment 4 (vno[0] = 83566) erasing segment 5 (vno[0] = 94167) erasing segment 6 (vno[0] = 95261) erasing segment 7 (vno[0] = 96276) erasing segment 8 (vno[0] = 96331) erasing segment 9 (vno[0] = 97438) erasing segment 10 (vno[0] = 98545) erasing segment 11 (vno[0] = 98639) erasing segment 12 (vno[0] = 99654) erasing segment 13 (vno[0] = 106690) erasing segment 14 (vno[0] = 111004) mri_label2vol --defects /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.orig.nofix /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.defect_labels /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz 1000 0 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/surface.defects.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.nofix.cortex.label mri_label2vol supposed to be reproducible but seed not set Contraining to label /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.nofix.cortex.label Changing input type 0 to MRI_INT Converting defects to volume: offset=1000, merge=0 Writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/surface.defects.mgz mris_defects_pointset -s /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.orig.nofix -d /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.defect_labels -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.defects.pointset --label /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.nofix.cortex.label Reading in surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.orig.nofix Reading in defect segmentation /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.defect_labels Reading in label /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.nofix.cortex.label #VMPC# mris_defects_pointset 177016 mris_defects_pointset done mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.orig.nofix /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.nofix.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 9 non-cortical segments detected only using segment with 7278 vertices erasing segment 0 (vno[0] = 16631) erasing segment 2 (vno[0] = 54939) erasing segment 3 (vno[0] = 55060) erasing segment 4 (vno[0] = 75848) erasing segment 5 (vno[0] = 88997) erasing segment 6 (vno[0] = 93840) erasing segment 7 (vno[0] = 93901) erasing segment 8 (vno[0] = 95195) mri_label2vol --defects /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.orig.nofix /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.defect_labels /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/surface.defects.mgz 2000 1 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/surface.defects.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.nofix.cortex.label mri_label2vol supposed to be reproducible but seed not set Contraining to label /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.nofix.cortex.label Converting defects to volume: offset=2000, merge=1 Writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/surface.defects.mgz mris_defects_pointset -s /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.orig.nofix -d /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.defect_labels -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.defects.pointset --label /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.nofix.cortex.label Reading in surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.orig.nofix Reading in defect segmentation /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.defect_labels Reading in label /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.nofix.cortex.label #VMPC# mris_defects_pointset 174928 mris_defects_pointset done Started at Sun Sep 28 18:27:03 CDT 2025 Ended at Sun Sep 28 18:27:22 CDT 2025 Defect2seg-Run-Time-Sec 19 Defect2seg-Run-Time-Min 0.38 Defect2seg-Run-Time-Hours 0.01 tkmeditfv sub-04P0G6LK_ses-00A brain.finalsurfs.mgz -defect defect2seg Done mris_remesh --remesh --iters 3 --input /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.orig.premesh --output /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.orig iters = 3 standard remeshing without target adjusted l: 0.709274 remeshing to edge length 0.709274 with 3 iterations avg qual before : 0.890126 after: 0.971113 Removing intersections Remeshed surface quality stats nv0 = 131830 nv = 137288 1.0414 Area 274572 0.30134 0.03358 0.075412 0.4641 Corner 823716 60.00000 8.81124 16.537579 145.0835 Edge 411858 0.84218 0.08232 0.448126 1.2539 Hinge 411858 9.80724 10.74514 0.000000 151.4779 mris_remesh done mris_remesh --remesh --iters 3 --input /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.orig.premesh --output /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.orig iters = 3 standard remeshing without target adjusted l: 0.708997 remeshing to edge length 0.708997 with 3 iterations avg qual before : 0.890334 after: 0.971383 Removing intersections Remeshed surface quality stats nv0 = 130664 nv = 135904 1.0401 Area 271804 0.30115 0.03350 0.072865 0.4924 Corner 815412 60.00000 8.76965 11.432831 147.5520 Edge 407706 0.84184 0.08196 0.300677 1.2280 Hinge 407706 9.67078 10.69300 0.000008 146.1887 mris_remesh done /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.00 hours Found 0 intersections writing corrected surface to ../surf/lh.orig rm -f ../surf/lh.inflated /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours Found 0 intersections writing corrected surface to ../surf/rh.orig rm -f ../surf/rh.inflated #-------------------------------------------- #@# AutoDetGWStats lh Sun Sep 28 18:28:08 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh 8.0.0 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh border white: 231159 voxels (1.38%) border gray 272771 voxels (1.63%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/lh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=34616, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (100.0): 99.2 +- 9.3 [70.0 --> 110.0] CCS GM (71.0) : 71.4 +- 9.7 [30.0 --> 110.0] white_mean = 99.224 +/- 9.34479, gray_mean = 71.4306 +/- 9.70937 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=149 nbins=150 intensity peaks found at WM=104+-5.2, GM=68+-6.1 white_mode = 104, gray_mode = 68 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 58.3 (was 70.000000) setting MAX_BORDER_WHITE to 113.3 (was 105.000000) setting MIN_BORDER_WHITE to 68.0 (was 85.000000) setting MAX_CSF to 48.6 (was 40.000000) setting MAX_GRAY to 94.7 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 58.3 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 38.9 (was 40.000000) When placing the white surface white_border_hi = 113.345; white_border_low = 68; white_outside_low = 58.2906; white_inside_hi = 120; white_outside_hi = 113.345; When placing the pial surface pial_border_hi = 58.2906; pial_border_low = 38.8719; pial_outside_low = 10; pial_inside_hi = 94.6552; pial_outside_hi = 53.4359; #VMPC# mris_autodet_gwstats VmPeak 248804 mris_autodet_gwstats done #-------------------------------------------- #@# AutoDetGWStats rh Sun Sep 28 18:28:10 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh 8.0.0 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh border white: 231159 voxels (1.38%) border gray 272771 voxels (1.63%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/rh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=34616, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (100.0): 99.2 +- 9.3 [70.0 --> 110.0] CCS GM (71.0) : 71.4 +- 9.7 [30.0 --> 110.0] white_mean = 99.224 +/- 9.34479, gray_mean = 71.4306 +/- 9.70937 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=149 nbins=150 intensity peaks found at WM=105+-6.1, GM=68+-6.1 white_mode = 105, gray_mode = 68 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 58.3 (was 70.000000) setting MAX_BORDER_WHITE to 114.3 (was 105.000000) setting MIN_BORDER_WHITE to 68.0 (was 85.000000) setting MAX_CSF to 48.6 (was 40.000000) setting MAX_GRAY to 95.7 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 58.3 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 38.9 (was 40.000000) When placing the white surface white_border_hi = 114.345; white_border_low = 68; white_outside_low = 58.2906; white_inside_hi = 120; white_outside_hi = 114.345; When placing the pial surface pial_border_hi = 58.2906; pial_border_low = 38.8719; pial_outside_low = 10; pial_inside_hi = 95.6552; pial_outside_hi = 53.4359; #VMPC# mris_autodet_gwstats VmPeak 247192 mris_autodet_gwstats done #-------------------------------------------- #@# WhitePreAparc lh Sun Sep 28 18:28:13 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz Reading in input surface ../surf/lh.orig Smoothing surface before ripping with 5 iterations Area 274572 0.26452 0.06471 0.006829 0.5790 Corner 823716 60.00000 9.86476 10.778955 144.4191 Edge 411858 0.78545 0.11787 0.082633 1.2976 Hinge 411858 6.51127 6.91513 0.000001 135.2854 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1221 MRIclipBrightWM(): nthresh=34616, wmmin=5, clip=110 MRIfindBrightNonWM(): 90 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1221 Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 #FML# MRISripMidline(): nmarked=5841, nmarked2=0, nripped=5841 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 84 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 68644: xyz = (-39.0686,-26.8333,12.2206) oxyz = (-39.0686,-26.8333,12.2206) wxzy = (-39.0686,-26.8333,12.2206) pxyz = (0,0,0) CBVO Creating mask 137288 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5925 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=5976, nmarked2=0, nripped=5976 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 0 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 113.3447950; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 771712 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=2 had to be increased for 326 vertices, nripped=5976 mean border=80.5, 94 (94) missing vertices, mean dist 0.2 [0.5 (%41.7)->0.7 (%58.3))] %81 local maxima, %14 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1328 min Finding expansion regions mean absolute distance = 0.63 +- 0.74 4907 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-01-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=3380113.8, rms=11.090 001: dt: 0.5000, sse=1784973.6, rms=7.902 (28.751%) 002: dt: 0.5000, sse=1158975.1, rms=6.199 (21.552%) 003: dt: 0.5000, sse=877645.0, rms=5.271 (14.974%) 004: dt: 0.5000, sse=734656.8, rms=4.726 (10.328%) 005: dt: 0.5000, sse=663250.2, rms=4.406 (6.772%) 006: dt: 0.5000, sse=626968.9, rms=4.226 (4.100%) 007: dt: 0.5000, sse=606954.3, rms=4.125 (2.380%) 008: dt: 0.5000, sse=590567.1, rms=4.054 (1.711%) rms = 4.0126/4.0544, sse=582218.4/590567.0, time step reduction 1 of 3 to 0.250 0 0 1 009: dt: 0.5000, sse=582218.4, rms=4.013 (1.030%) 010: dt: 0.2500, sse=353114.1, rms=2.663 (33.641%) 011: dt: 0.2500, sse=301959.6, rms=2.288 (14.073%) 012: dt: 0.2500, sse=287476.2, rms=2.180 (4.717%) 013: dt: 0.2500, sse=277081.2, rms=2.099 (3.741%) rms = 2.0558/2.0985, sse=275698.1/277081.3, time step reduction 2 of 3 to 0.125 0 0 1 014: dt: 0.2500, sse=275698.1, rms=2.056 (2.037%) 015: dt: 0.1250, sse=264466.9, rms=1.942 (5.557%) rms = 1.9169/1.9416, sse=263015.2/264466.9, time step reduction 3 of 3 to 0.062 0 0 1 016: dt: 0.1250, sse=263015.2, rms=1.917 (1.273%) maximum number of reductions reached, breaking from loop positioning took 1.0 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5976 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6126, nmarked2=0, nripped=6126 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 29 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 113.3447950; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 1737884 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=1 had to be increased for 363 vertices, nripped=6155 mean border=84.0, 113 (13) missing vertices, mean dist -0.2 [0.3 (%78.2)->0.3 (%21.8))] %89 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0895 min Finding expansion regions mean absolute distance = 0.29 +- 0.43 3028 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-01-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=854785.3, rms=4.928 017: dt: 0.5000, sse=545704.4, rms=3.480 (29.378%) rms = 3.8725/3.4800, sse=612215.2/545704.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 018: dt: 0.2500, sse=392012.2, rms=2.528 (27.346%) 019: dt: 0.2500, sse=334651.0, rms=2.070 (18.110%) 020: dt: 0.2500, sse=322501.7, rms=1.858 (10.275%) 021: dt: 0.2500, sse=306506.0, rms=1.778 (4.266%) rms = 1.7287/1.7785, sse=302391.9/306506.0, time step reduction 2 of 3 to 0.125 0 0 1 022: dt: 0.2500, sse=302391.9, rms=1.729 (2.798%) 023: dt: 0.1250, sse=291791.6, rms=1.625 (5.996%) rms = 1.6032/1.6250, sse=291937.5/291791.6, time step reduction 3 of 3 to 0.062 0 1 1 024: dt: 0.1250, sse=291937.5, rms=1.603 (1.344%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6155 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6211, nmarked2=0, nripped=6211 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 18 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 113.3447950; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 1854176 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 361 vertices, nripped=6229 mean border=85.9, 140 (4) missing vertices, mean dist -0.1 [0.2 (%70.6)->0.2 (%29.4))] %92 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0485 min Finding expansion regions mean absolute distance = 0.20 +- 0.31 3252 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-01-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=441361.6, rms=2.898 rms = 3.2566/2.8983, sse=522057.9/441361.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=330890.0, rms=2.046 (29.412%) 026: dt: 0.2500, sse=300189.9, rms=1.590 (22.296%) 027: dt: 0.2500, sse=279601.9, rms=1.516 (4.620%) rms = 1.4956/1.5163, sse=283715.8/279601.9, time step reduction 2 of 3 to 0.125 0 1 1 028: dt: 0.2500, sse=283715.8, rms=1.496 (1.362%) 029: dt: 0.1250, sse=267941.7, rms=1.388 (7.210%) rms = 1.3720/1.3878, sse=269122.6/267941.7, time step reduction 3 of 3 to 0.062 0 1 1 030: dt: 0.1250, sse=269122.6, rms=1.372 (1.140%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6229 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6254, nmarked2=0, nripped=6254 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 3 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 113.3447950; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 1960812 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 348 vertices, nripped=6257 mean border=86.5, 265 (2) missing vertices, mean dist -0.0 [0.2 (%55.0)->0.2 (%45.0))] %92 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0309 min Finding expansion regions mean absolute distance = 0.17 +- 0.26 2984 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-01-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=282215.4, rms=1.564 rms = 1.9722/1.5642, sse=329458.9/282215.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 031: dt: 0.2500, sse=257078.8, rms=1.188 (24.025%) rms = 1.0889/1.1884, sse=260842.2/257078.8, time step reduction 2 of 3 to 0.125 0 1 0 032: dt: 0.2500, sse=260842.2, rms=1.089 (8.369%) rms = 1.0636/1.0889, sse=245719.9/260842.2, time step reduction 3 of 3 to 0.062 0 0 1 033: dt: 0.1250, sse=245719.9, rms=1.064 (2.324%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.39 minutes Writing output to ../surf/lh.white.preaparc #VMPC# mris_place_surfaces VmPeak 2029752 mris_place_surface done #-------------------------------------------- #@# WhitePreAparc rh Sun Sep 28 18:30:41 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz Reading in input surface ../surf/rh.orig Smoothing surface before ripping with 5 iterations Area 271804 0.26492 0.06449 0.001545 0.5739 Corner 815412 60.00000 9.84292 8.107546 138.9766 Edge 407706 0.78606 0.11727 0.047170 1.3136 Hinge 407706 6.43232 6.87610 0.000012 141.2090 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1221 MRIclipBrightWM(): nthresh=34616, wmmin=5, clip=110 MRIfindBrightNonWM(): 90 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1221 Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 #FML# MRISripMidline(): nmarked=5866, nmarked2=0, nripped=5866 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 68 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 67952: xyz = (55.326,-24.616,42.8663) oxyz = (55.326,-24.616,42.8663) wxzy = (55.326,-24.616,42.8663) pxyz = (0,0,0) CBVO Creating mask 135904 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5934 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=5963, nmarked2=0, nripped=5963 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 0 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 114.3447950; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 799468 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=2 had to be increased for 241 vertices, nripped=5963 mean border=80.2, 57 (57) missing vertices, mean dist 0.2 [0.5 (%39.7)->0.7 (%60.3))] %80 local maxima, %16 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1288 min Finding expansion regions mean absolute distance = 0.61 +- 0.72 5147 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-01-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=3429267.5, rms=11.235 001: dt: 0.5000, sse=1832969.1, rms=8.062 (28.247%) 002: dt: 0.5000, sse=1215046.9, rms=6.413 (20.444%) 003: dt: 0.5000, sse=935985.0, rms=5.517 (13.978%) 004: dt: 0.5000, sse=791415.4, rms=4.967 (9.965%) 005: dt: 0.5000, sse=702626.1, rms=4.611 (7.174%) 006: dt: 0.5000, sse=661475.9, rms=4.421 (4.107%) 007: dt: 0.5000, sse=635134.2, rms=4.273 (3.352%) 008: dt: 0.5000, sse=613059.4, rms=4.188 (2.000%) 009: dt: 0.5000, sse=593359.6, rms=4.098 (2.145%) rms = 4.0527/4.0980, sse=586403.7/593359.5, time step reduction 1 of 3 to 0.250 0 0 1 010: dt: 0.5000, sse=586403.6, rms=4.053 (1.105%) 011: dt: 0.2500, sse=347289.9, rms=2.683 (33.785%) 012: dt: 0.2500, sse=294116.0, rms=2.263 (15.664%) 013: dt: 0.2500, sse=281474.7, rms=2.143 (5.308%) 014: dt: 0.2500, sse=269404.2, rms=2.043 (4.678%) rms = 1.9953/2.0428, sse=266943.7/269404.2, time step reduction 2 of 3 to 0.125 0 0 1 015: dt: 0.2500, sse=266943.7, rms=1.995 (2.323%) 016: dt: 0.1250, sse=253330.2, rms=1.864 (6.577%) rms = 1.8365/1.8641, sse=251136.3/253330.2, time step reduction 3 of 3 to 0.062 0 0 1 017: dt: 0.1250, sse=251136.2, rms=1.837 (1.477%) maximum number of reductions reached, breaking from loop positioning took 1.0 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5963 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6066, nmarked2=0, nripped=6066 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 14 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 114.3447950; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 1750504 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=1 had to be increased for 234 vertices, nripped=6080 mean border=83.8, 93 (4) missing vertices, mean dist -0.2 [0.3 (%77.9)->0.3 (%22.1))] %88 local maxima, % 8 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0871 min Finding expansion regions mean absolute distance = 0.29 +- 0.43 3168 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-01-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=868243.8, rms=5.016 018: dt: 0.5000, sse=536868.8, rms=3.489 (30.451%) rms = 3.9195/3.4886, sse=617614.1/536868.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=372643.9, rms=2.464 (29.359%) 020: dt: 0.2500, sse=317716.4, rms=1.988 (19.322%) 021: dt: 0.2500, sse=296515.7, rms=1.778 (10.589%) 022: dt: 0.2500, sse=287792.2, rms=1.707 (3.976%) rms = 1.6615/1.7070, sse=283707.8/287792.2, time step reduction 2 of 3 to 0.125 0 0 1 023: dt: 0.2500, sse=283707.8, rms=1.661 (2.667%) 024: dt: 0.1250, sse=273601.1, rms=1.549 (6.790%) rms = 1.5311/1.5487, sse=271782.1/273601.1, time step reduction 3 of 3 to 0.062 0 0 1 025: dt: 0.1250, sse=271782.2, rms=1.531 (1.137%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6080 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 1 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6129, nmarked2=0, nripped=6129 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 9 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 114.3447950; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 1863368 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 267 vertices, nripped=6138 mean border=85.7, 131 (0) missing vertices, mean dist -0.1 [0.2 (%69.5)->0.2 (%30.5))] %91 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0473 min Finding expansion regions mean absolute distance = 0.20 +- 0.31 3395 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-01-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=424026.8, rms=2.885 rms = 3.2653/2.8851, sse=496732.2/424026.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 026: dt: 0.2500, sse=314590.1, rms=2.019 (30.008%) 027: dt: 0.2500, sse=273513.3, rms=1.557 (22.892%) 028: dt: 0.2500, sse=268116.6, rms=1.481 (4.878%) rms = 1.4513/1.4811, sse=265896.1/268116.5, time step reduction 2 of 3 to 0.125 0 0 1 029: dt: 0.2500, sse=265896.1, rms=1.451 (2.011%) 030: dt: 0.1250, sse=257491.7, rms=1.340 (7.699%) rms = 1.3214/1.3396, sse=256580.6/257491.7, time step reduction 3 of 3 to 0.062 0 0 1 031: dt: 0.1250, sse=256580.6, rms=1.321 (1.359%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6138 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 1 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6150, nmarked2=0, nripped=6150 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 1 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 114.3447950; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 1966672 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 345 vertices, nripped=6151 mean border=86.2, 195 (0) missing vertices, mean dist -0.0 [0.2 (%54.6)->0.2 (%45.4))] %92 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0302 min Finding expansion regions mean absolute distance = 0.18 +- 0.27 3217 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-01-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=269790.8, rms=1.521 rms = 1.9567/1.5213, sse=314449.5/269790.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 032: dt: 0.2500, sse=243500.5, rms=1.132 (25.586%) 033: dt: 0.2500, sse=237681.8, rms=1.016 (10.212%) rms = 1.0350/1.0164, sse=238431.1/237681.8, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step rms = 1.0025/1.0164, sse=236580.5/237681.8, time step reduction 3 of 3 to 0.062 0 0 1 034: dt: 0.1250, sse=236580.5, rms=1.002 (1.371%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.50 minutes Writing output to ../surf/rh.white.preaparc #VMPC# mris_place_surfaces VmPeak 2023916 mris_place_surface done #-------------------------------------------- #@# CortexLabel lh Sun Sep 28 18:33:16 CDT 2025 Sun Sep 28 18:33:16 CDT 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex --s sub-04P0G6LK_ses-00A --lh --fix-ga -rwxr-x--- 1 root kdamme 14140 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1878476 mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white.preaparc /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.cortex-no-ga.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 9 non-cortical segments detected only using segment with 7674 vertices erasing segment 0 (vno[0] = 15166) erasing segment 2 (vno[0] = 56886) erasing segment 3 (vno[0] = 69600) erasing segment 4 (vno[0] = 79699) erasing segment 5 (vno[0] = 82429) erasing segment 6 (vno[0] = 112590) erasing segment 7 (vno[0] = 113205) erasing segment 8 (vno[0] = 130047) mri_binarize --match 3201 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/gyrus-ambiens.lh.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri cmdline mri_binarize --match 3201 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/gyrus-ambiens.lh.mgz sysname Linux hostname c-01-05 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/entowm.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/gyrus-ambiens.lh.mgz Binarizing based on matching values nMatch 1 0 3201 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 218 values in range Counting number of voxels in first frame Found 218 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/gyrus-ambiens.lh.mgz Count: 218 218.000000 16777216 0.001299 mri_binarize done mri_vol2surf --regheader sub-04P0G6LK_ses-00A --hemi lh --surf white.preaparc --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/gyrus-ambiens.lh.mgz --projdist-max -1 0 .1 --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.mgz INFO: Delta=0.1 > Max=0, may be ok, maybe not srcvol = /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/gyrus-ambiens.lh.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white.preaparc hemi = lh ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 1 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white.preaparc Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 0 0.1 1 -1 -1 0 using old 2 -0.9 -1 0 using old 3 -0.8 -1 0 using old 4 -0.7 -1 0 using old 5 -0.6 -1 0 using old 6 -0.5 -1 0 using old 7 -0.4 -1 0 using old 8 -0.3 -1 0 using old 9 -0.2 -1 0 using old 10 -0.0999999 -1 0 using old Done mapping volume to surface Number of source voxels hit = 92010 Writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.mgz Dim: 137288 1 1 mri_vol2surf done mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white.preaparc /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.white.preaparc.nxyz.mgz mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white.preaparc /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.white.preaparc.nxyz.mgz Reading in /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white.preaparc Converting surface XYZ coordinates from tkr to scanner space. Outputting normals /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.white.preaparc.nxyz.mgz mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nx.mask.mgz --min +0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri cmdline mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nx.mask.mgz --min +0.01 sysname Linux hostname c-01-05 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.white.preaparc.nxyz.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nx.mask.mgz Binarizing based on threshold min 0.01 max +infinity binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.mgz fstart = 0, fend = 0, nframes = 1 Found 313 values in range Counting number of voxels in first frame Found 313 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nx.mask.mgz Count: 313 313.000000 137288 0.227988 mri_binarize done mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nz.mask.mgz --max -0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri cmdline mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nz.mask.mgz --max -0.01 sysname Linux hostname c-01-05 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.white.preaparc.nxyz.mgz frame 2 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nz.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.mgz fstart = 2, fend = 2, nframes = 1 Found 264 values in range Counting number of voxels in first frame Found 264 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nz.mask.mgz Count: 264 264.000000 137288 0.192296 mri_binarize done fscalc /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.lat.mask.mgz Sun Sep 28 18:33:28 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fscalc /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.lat.mask.mgz freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/tmp.Qr16Vj/tmp.mgh mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/tmp.Qr16Vj/tmp.mgh reading from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nx.mask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/tmp.Qr16Vj/tmp.mgh... ---------------------- mris_calc -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/tmp.Qr16Vj/tmp.mgh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/tmp.Qr16Vj/tmp.mgh and /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.nz.mask.mgz Packing Done packing Packing Done packing Unpacking Saving result to '/scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/tmp.Qr16Vj/tmp.mgh' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 13216 ---------------------- mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/tmp.Qr16Vj/tmp.mgh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.lat.mask.mgz mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/tmp.Qr16Vj/tmp.mgh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.lat.mask.mgz reading from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/tmp.Qr16Vj/tmp.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.lat.mask.mgz... mri_cor2label --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.lat.mask.mgz --l /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.med.label --surf-path /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white.preaparc --id 1 --thresh 0.5 Loading mri /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.lat.mask.mgz 8.0.0 ------- Vox2RAS of input volume ----------- -1.00000 0.00000 0.00000 68644.00000; 0.00000 0.00000 1.00000 -0.50000; 0.00000 -1.00000 0.00000 0.50000; 0.00000 0.00000 0.00000 1.00000; Scanning the volume mri_cor2label completed SUCCESSFULLY Loading surf /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white.preaparc Found 250 label voxels Writing label file /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.med.label Centroid: -20.64 -20.80 -4.09 mri_mergelabels -i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.cortex-no-ga.label -i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1878476/lh.gyrus-ambiens.med.label -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Done To view results, run fsvglrun freeview -f /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white.preaparc:label=/scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Started at Sun Sep 28 18:33:16 CDT 2025 Ended at Sun Sep 28 18:33:28 CDT 2025 Label-Cortex-Run-Time-Sec 12 Label-Cortex-Run-Time-Min 0.20 Label-Cortex-Run-Time-Hours 0.00 label-cortex Done #-------------------------------------------- #@# CortexLabel+HipAmyg lh Sun Sep 28 18:33:28 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_label2label --label-cortex ../surf/lh.white.preaparc aseg.presurf.mgz 1 ../label/lh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 10 non-cortical segments detected only using segment with 5059 vertices erasing segment 0 (vno[0] = 15166) erasing segment 2 (vno[0] = 44205) erasing segment 3 (vno[0] = 45310) erasing segment 4 (vno[0] = 56849) erasing segment 5 (vno[0] = 69600) erasing segment 6 (vno[0] = 79699) erasing segment 7 (vno[0] = 82429) erasing segment 8 (vno[0] = 113141) erasing segment 9 (vno[0] = 113205) #-------------------------------------------- #@# CortexLabel rh Sun Sep 28 18:33:37 CDT 2025 Sun Sep 28 18:33:37 CDT 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex --s sub-04P0G6LK_ses-00A --rh --fix-ga -rwxr-x--- 1 root kdamme 14140 May 28 09:17 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/label-cortex freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1879603 mri_label2label --label-cortex /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white.preaparc /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/aseg.presurf.mgz 0 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.cortex-no-ga.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 6 non-cortical segments detected only using segment with 7556 vertices erasing segment 0 (vno[0] = 12145) erasing segment 2 (vno[0] = 70558) erasing segment 3 (vno[0] = 80388) erasing segment 4 (vno[0] = 80480) erasing segment 5 (vno[0] = 80503) mri_binarize --match 4201 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/gyrus-ambiens.rh.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri cmdline mri_binarize --match 4201 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/entowm.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/gyrus-ambiens.rh.mgz sysname Linux hostname c-01-05 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/entowm.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/gyrus-ambiens.rh.mgz Binarizing based on matching values nMatch 1 0 4201 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 279 values in range Counting number of voxels in first frame Found 279 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/gyrus-ambiens.rh.mgz Count: 279 279.000000 16777216 0.001663 mri_binarize done mri_vol2surf --regheader sub-04P0G6LK_ses-00A --hemi rh --surf white.preaparc --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/gyrus-ambiens.rh.mgz --projdist-max -1 0 .1 --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.mgz INFO: Delta=0.1 > Max=0, may be ok, maybe not srcvol = /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/gyrus-ambiens.rh.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white.preaparc hemi = rh ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 1 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white.preaparc Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 0 0.1 1 -1 -1 0 using old 2 -0.9 -1 0 using old 3 -0.8 -1 0 using old 4 -0.7 -1 0 using old 5 -0.6 -1 0 using old 6 -0.5 -1 0 using old 7 -0.4 -1 0 using old 8 -0.3 -1 0 using old 9 -0.2 -1 0 using old 10 -0.0999999 -1 0 using old Done mapping volume to surface Number of source voxels hit = 91890 Writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.mgz Dim: 135904 1 1 mri_vol2surf done mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white.preaparc /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.white.preaparc.nxyz.mgz mris_convert --to-scanner -n /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white.preaparc /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.white.preaparc.nxyz.mgz Reading in /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white.preaparc Converting surface XYZ coordinates from tkr to scanner space. Outputting normals /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.white.preaparc.nxyz.mgz mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nx.mask.mgz --max -0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri cmdline mri_binarize --frame 0 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nx.mask.mgz --max -0.01 sysname Linux hostname c-01-05 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.white.preaparc.nxyz.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nx.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.mgz fstart = 0, fend = 0, nframes = 1 Found 361 values in range Counting number of voxels in first frame Found 361 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nx.mask.mgz Count: 361 361.000000 135904 0.265629 mri_binarize done mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nz.mask.mgz --max -0.01 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri cmdline mri_binarize --frame 2 --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.white.preaparc.nxyz.mgz --mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.mgz --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nz.mask.mgz --max -0.01 sysname Linux hostname c-01-05 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.white.preaparc.nxyz.mgz frame 2 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nz.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.mgz fstart = 2, fend = 2, nframes = 1 Found 277 values in range Counting number of voxels in first frame Found 277 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nz.mask.mgz Count: 277 277.000000 135904 0.203820 mri_binarize done fscalc /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.lat.mask.mgz Sun Sep 28 18:33:49 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fscalc /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nx.mask.mgz and /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nz.mask.mgz -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.lat.mask.mgz freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/tmp.0ndOaW/tmp.mgh mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nx.mask.mgz /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/tmp.0ndOaW/tmp.mgh reading from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nx.mask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/tmp.0ndOaW/tmp.mgh... ---------------------- mris_calc -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/tmp.0ndOaW/tmp.mgh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/tmp.0ndOaW/tmp.mgh and /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.nz.mask.mgz Packing Done packing Packing Done packing Unpacking Saving result to '/scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/tmp.0ndOaW/tmp.mgh' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 13192 ---------------------- mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/tmp.0ndOaW/tmp.mgh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.lat.mask.mgz mri_convert /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/tmp.0ndOaW/tmp.mgh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.lat.mask.mgz reading from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/tmp.0ndOaW/tmp.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.lat.mask.mgz... mri_cor2label --i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.lat.mask.mgz --l /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.med.label --surf-path /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white.preaparc --id 1 --thresh 0.5 Loading mri /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.lat.mask.mgz 8.0.0 ------- Vox2RAS of input volume ----------- -1.00000 0.00000 0.00000 67952.00000; 0.00000 0.00000 1.00000 -0.50000; 0.00000 -1.00000 0.00000 0.50000; 0.00000 0.00000 0.00000 1.00000; Scanning the volume mri_cor2label completed SUCCESSFULLY Loading surf /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white.preaparc Found 276 label voxels Writing label file /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.med.label Centroid: 14.22 -20.81 -2.88 mri_mergelabels -i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.cortex-no-ga.label -i /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/tmpdir.label-cortex.1879603/rh.gyrus-ambiens.med.label -o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Done To view results, run fsvglrun freeview -f /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white.preaparc:label=/scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Started at Sun Sep 28 18:33:37 CDT 2025 Ended at Sun Sep 28 18:33:50 CDT 2025 Label-Cortex-Run-Time-Sec 13 Label-Cortex-Run-Time-Min 0.22 Label-Cortex-Run-Time-Hours 0.00 label-cortex Done #-------------------------------------------- #@# CortexLabel+HipAmyg rh Sun Sep 28 18:33:50 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_label2label --label-cortex ../surf/rh.white.preaparc aseg.presurf.mgz 1 ../label/rh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 10 non-cortical segments detected only using segment with 4613 vertices erasing segment 0 (vno[0] = 12145) erasing segment 2 (vno[0] = 40671) erasing segment 3 (vno[0] = 44880) erasing segment 4 (vno[0] = 44918) erasing segment 5 (vno[0] = 46991) erasing segment 6 (vno[0] = 55691) erasing segment 7 (vno[0] = 72460) erasing segment 8 (vno[0] = 80388) erasing segment 9 (vno[0] = 80503) #-------------------------------------------- #@# Smooth2 lh Sun Sep 28 18:33:58 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Smooth2 rh Sun Sep 28 18:34:00 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 lh Sun Sep 28 18:34:02 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated Reading ../surf/lh.smoothwm avg radius = 44.1 mm, total surface area = 84672 mm^2 step 000: RMS=0.176 (target=0.015) step 005: RMS=0.118 (target=0.015) step 010: RMS=0.090 (target=0.015) step 015: RMS=0.076 (target=0.015) step 020: RMS=0.063 (target=0.015) step 025: RMS=0.052 (target=0.015) step 030: RMS=0.043 (target=0.015) step 035: RMS=0.036 (target=0.015) step 040: RMS=0.030 (target=0.015) step 045: RMS=0.025 (target=0.015) step 050: RMS=0.022 (target=0.015) step 055: RMS=0.020 (target=0.015) step 060: RMS=0.019 (target=0.015) writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc inflation complete. inflation took 0.2 minutes mris_inflate utimesec 13.611115 mris_inflate stimesec 0.764873 mris_inflate ru_maxrss 212284 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 462297 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 10744 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 156 mris_inflate ru_nivcsw 22 #-------------------------------------------- #@# Inflation2 rh Sun Sep 28 18:34:17 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated Reading ../surf/rh.smoothwm avg radius = 43.8 mm, total surface area = 84528 mm^2 step 000: RMS=0.175 (target=0.015) step 005: RMS=0.118 (target=0.015) step 010: RMS=0.090 (target=0.015) step 015: RMS=0.075 (target=0.015) step 020: RMS=0.062 (target=0.015) step 025: RMS=0.052 (target=0.015) step 030: RMS=0.043 (target=0.015) step 035: RMS=0.036 (target=0.015) step 040: RMS=0.031 (target=0.015) step 045: RMS=0.026 (target=0.015) step 050: RMS=0.023 (target=0.015) step 055: RMS=0.022 (target=0.015) step 060: RMS=0.020 (target=0.015) writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc inflation complete. inflation took 0.2 minutes mris_inflate utimesec 13.354981 mris_inflate stimesec 0.069701 mris_inflate ru_maxrss 209832 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 31837 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 10624 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 155 mris_inflate ru_nivcsw 20 #-------------------------------------------- #@# Curv .H and .K lh Sun Sep 28 18:34:30 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf mris_curvature -w -seed 1234 lh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 13.422*4pi (168.668) --> -12 handles ICI = 168.9, FI = 1741.6, variation=27357.119 writing Gaussian curvature to ./lh.white.preaparc.K... done. writing mean curvature to ./lh.white.preaparc.H... lh.white.preaparc.H mris_curvature done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 234 vertices thresholded to be in k1 ~ [-0.19 0.27], k2 ~ [-0.08 0.05] total integrated curvature = 0.680*4pi (8.544) --> 0 handles ICI = 1.5, FI = 9.3, variation=156.183 115 vertices thresholded to be in [-0.00 0.01] writing Gaussian curvature to ./lh.inflated.K... thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 157 vertices thresholded to be in [-0.11 0.14] done. writing mean curvature to ./lh.inflated.H... curvature mean = -0.016, std = 0.022 lh.inflated.H mris_curvature done. #-------------------------------------------- #@# Curv .H and .K rh Sun Sep 28 18:35:05 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf mris_curvature -w -seed 1234 rh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 7.910*4pi (99.397) --> -7 handles ICI = 161.7, FI = 1692.6, variation=26610.944 writing Gaussian curvature to ./rh.white.preaparc.K... done. writing mean curvature to ./rh.white.preaparc.H... rh.white.preaparc.H mris_curvature done. rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 169 vertices thresholded to be in k1 ~ [-0.23 0.31], k2 ~ [-0.13 0.11] total integrated curvature = 0.565*4pi (7.105) --> 0 handles ICI = 1.5, FI = 9.5, variation=163.463 146 vertices thresholded to be in [-0.02 0.01] writing Gaussian curvature to ./rh.inflated.K... thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 132 vertices thresholded to be in [-0.13 0.14] done. writing mean curvature to ./rh.inflated.H... curvature mean = -0.016, std = 0.023 rh.inflated.H mris_curvature done. #-------------------------------------------- #@# Sphere lh Sun Sep 28 18:35:39 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_sphere -threads 1 -seed 1234 ../surf/lh.inflated ../surf/lh.sphere Setting OMP_NUM_THREADS=1 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.292... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=c-01-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.50 pass 1: epoch 2 of 3 starting distance error %19.48 unfolding complete - removing small folds... starting distance error %19.40 removing remaining folds... final distance error %19.44 MRISunfold() return, current seed 1234 -01: dt=0.0000, 4 negative triangles VmPeak 533156 208: dt=0.9900, 4 negative triangles 209: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/lh.sphere spherical transformation took 0.1174 hours FSRUNTIME@ mris_sphere 0.1174 hours 1 threads #VMPC# mris_sphere VmPeak 533156 mris_sphere done #-------------------------------------------- #@# Sphere rh Sun Sep 28 18:42:41 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_sphere -threads 1 -seed 1234 ../surf/rh.inflated ../surf/rh.sphere Setting OMP_NUM_THREADS=1 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.294... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=c-01-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.56 pass 1: epoch 2 of 3 starting distance error %19.51 unfolding complete - removing small folds... starting distance error %19.42 removing remaining folds... final distance error %19.45 MRISunfold() return, current seed 1234 -01: dt=0.0000, 13 negative triangles VmPeak 530304 209: dt=0.9900, 13 negative triangles 210: dt=0.9900, 2 negative triangles 211: dt=0.9900, 1 negative triangles 212: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.1162 hours FSRUNTIME@ mris_sphere 0.1162 hours 1 threads #VMPC# mris_sphere VmPeak 530304 mris_sphere done #-------------------------------------------- #@# Surf Reg lh Sun Sep 28 18:49:40 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_register -curv -threads 1 ../surf/lh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts cmdline mris_register -curv -threads 1 ../surf/lh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 8.0.0 8.0.0 reading surface from ../surf/lh.sphere... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=c-01-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=c-01-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc tol=1.0e+00, sigma=0.5, host=c-01-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = 0.000, std = 5.743 curvature mean = 0.043, std = 0.817 curvature mean = 0.012, std = 0.864 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (2.50, -12.00, 6.50) sse = 260856.4, elapsed since starting=0.2186 min MRISrigidBodyAlignGlobal() done 0.22 min curvature mean = 0.019, std = 0.830 curvature mean = 0.006, std = 0.946 curvature mean = 0.015, std = 0.840 curvature mean = 0.003, std = 0.979 curvature mean = 0.015, std = 0.843 curvature mean = 0.000, std = 0.992 2 Reading smoothwm curvature mean = -0.022, std = 0.306 curvature mean = 0.043, std = 0.246 curvature mean = 0.064, std = 0.320 curvature mean = 0.037, std = 0.304 curvature mean = 0.039, std = 0.498 curvature mean = 0.036, std = 0.331 curvature mean = 0.022, std = 0.639 curvature mean = 0.036, std = 0.343 curvature mean = 0.007, std = 0.757 MRISregister() return, current seed 0 -01: dt=0.0000, 20 negative triangles VmPeak 514964 108: dt=0.9900, 20 negative triangles 109: dt=0.9900, 13 negative triangles 110: dt=0.9900, 11 negative triangles 111: dt=0.9900, 10 negative triangles 112: dt=0.9900, 6 negative triangles 113: dt=0.9900, 5 negative triangles 114: dt=0.9900, 5 negative triangles 115: dt=0.9900, 4 negative triangles writing registered surface to ../surf/lh.sphere.reg... registration took 0.08 hours #VMPC# mris_register VmPeak 514964 FSRUNTIME@ mris_register 0.0758 hours 1 threads ln -sf lh.sphere.reg lh.fsaverage.sphere.reg #-------------------------------------------- #@# Surf Reg rh Sun Sep 28 18:54:13 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_register -curv -threads 1 ../surf/rh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts cmdline mris_register -curv -threads 1 ../surf/rh.sphere /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 8.0.0 8.0.0 reading surface from ../surf/rh.sphere... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=c-01-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=c-01-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc tol=1.0e+00, sigma=0.5, host=c-01-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = 0.000, std = 5.685 curvature mean = 0.040, std = 0.812 curvature mean = 0.012, std = 0.862 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (9.50, -8.50, 11.00) sse = 234587.8, elapsed since starting=0.2149 min MRISrigidBodyAlignGlobal() done 0.21 min curvature mean = 0.026, std = 0.820 curvature mean = 0.005, std = 0.946 curvature mean = 0.024, std = 0.830 curvature mean = 0.002, std = 0.978 curvature mean = 0.023, std = 0.833 curvature mean = 0.000, std = 0.991 2 Reading smoothwm curvature mean = -0.019, std = 0.301 curvature mean = 0.040, std = 0.239 curvature mean = 0.060, std = 0.326 curvature mean = 0.035, std = 0.297 curvature mean = 0.036, std = 0.507 curvature mean = 0.035, std = 0.323 curvature mean = 0.019, std = 0.647 curvature mean = 0.034, std = 0.335 curvature mean = 0.004, std = 0.764 MRISregister() return, current seed 0 -01: dt=0.0000, 18 negative triangles VmPeak 512644 117: dt=0.9900, 18 negative triangles expanding nbhd size to 1 118: dt=0.9900, 20 negative triangles 119: dt=0.9900, 15 negative triangles 120: dt=0.9900, 14 negative triangles 121: dt=0.9900, 14 negative triangles 122: dt=0.9900, 17 negative triangles 123: dt=0.9900, 14 negative triangles 124: dt=0.9900, 12 negative triangles 125: dt=0.9900, 10 negative triangles 126: dt=0.9900, 10 negative triangles 127: dt=0.9900, 12 negative triangles 128: dt=0.9900, 9 negative triangles 129: dt=0.9900, 10 negative triangles 130: dt=0.9900, 9 negative triangles 131: dt=0.9900, 7 negative triangles 132: dt=0.9900, 7 negative triangles 133: dt=0.9900, 7 negative triangles 134: dt=0.9900, 5 negative triangles 135: dt=0.9900, 4 negative triangles 136: dt=0.9900, 2 negative triangles 137: dt=0.9900, 2 negative triangles 138: dt=0.9900, 2 negative triangles 139: dt=0.9900, 3 negative triangles 140: dt=0.9900, 4 negative triangles 141: dt=0.9900, 2 negative triangles 142: dt=0.9900, 1 negative triangles writing registered surface to ../surf/rh.sphere.reg... registration took 0.08 hours #VMPC# mris_register VmPeak 512644 FSRUNTIME@ mris_register 0.0805 hours 1 threads ln -sf rh.sphere.reg rh.fsaverage.sphere.reg #-------------------------------------------- #@# Jacobian white lh Sun Sep 28 18:59:03 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white.preaparc... writing curvature file ../surf/lh.jacobian_white type -1 #-------------------------------------------- #@# Jacobian white rh Sun Sep 28 18:59:03 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white.preaparc... writing curvature file ../surf/rh.jacobian_white type -1 #-------------------------------------------- #@# AvgCurv lh Sun Sep 28 18:59:04 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mrisp_paint -a 5 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/lh.avg_curv... #-------------------------------------------- #@# AvgCurv rh Sun Sep 28 18:59:05 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mrisp_paint -a 5 /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc lh Sun Sep 28 18:59:05 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-04P0G6LK_ses-00A lh ../surf/lh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.8 using min determinant for regularization = 0.006 0 singular and 342 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1223 labels changed using aseg relabeling using gibbs priors... 000: 3140 changed, 137288 examined... 001: 667 changed, 13274 examined... 002: 160 changed, 3822 examined... 003: 44 changed, 963 examined... 004: 14 changed, 278 examined... 005: 8 changed, 92 examined... 006: 5 changed, 47 examined... 007: 1 changed, 33 examined... 008: 0 changed, 7 examined... 239 labels changed using aseg 000: 119 total segments, 76 labels (420 vertices) changed 001: 44 total segments, 1 labels (1 vertices) changed 002: 43 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 9 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1646 vertices marked for relabeling... 1646 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 7 seconds. #----------------------------------------- #@# Cortical Parc rh Sun Sep 28 18:59:12 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-04P0G6LK_ses-00A rh ../surf/rh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1374 labels changed using aseg relabeling using gibbs priors... 000: 2859 changed, 135904 examined... 001: 631 changed, 12281 examined... 002: 141 changed, 3552 examined... 003: 49 changed, 872 examined... 004: 21 changed, 287 examined... 005: 2 changed, 132 examined... 006: 1 changed, 14 examined... 007: 0 changed, 7 examined... 188 labels changed using aseg 000: 95 total segments, 58 labels (421 vertices) changed 001: 40 total segments, 3 labels (3 vertices) changed 002: 37 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 5 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1656 vertices marked for relabeling... 1656 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 6 seconds. #-------------------------------------------- #@# WhiteSurfs lh Sun Sep 28 18:59:19 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof Reading in input surface ../surf/lh.white.preaparc Not smoothing input surface Area 274572 0.34342 0.13488 0.000481 2.2270 Corner 823716 60.00000 15.92175 0.259795 179.0879 Edge 411858 0.90485 0.22268 0.015777 3.4325 Hinge 411858 12.18312 13.72618 0.000029 179.9386 Reading in aparc ../label/lh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1221 MRIclipBrightWM(): nthresh=34616, wmmin=5, clip=110 MRIfindBrightNonWM(): 90 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1221 Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex.label MRISripNotLabel() ripped 7923/137288 vertices (129365 unripped) Reading in ripping surface ../surf/lh.white.preaparc Reading in aparc ../label/lh.aparc.annot for ripsurf [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Ripping BG MRISripBasalGanglia(): 1 -2 2 0.5 Ripping lateralorbitofrontal MRISripBasalGanglia(): 1 -2 2 0.5 ripped 820 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 68644: xyz = (-38.9904,-27.0085,11.9186) oxyz = (-38.9904,-27.0085,11.9186) wxzy = (-38.9904,-27.0085,11.9186) pxyz = (0,0,0) CBVO Creating mask 137288 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 113.3447950; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 846904 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=2 had to be increased for 394 vertices, nripped=8743 mean border=79.7, 116 (116) missing vertices, mean dist 0.4 [0.6 (%11.6)->0.5 (%88.4))] %76 local maxima, %18 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1217 min Finding expansion regions mean absolute distance = 0.52 +- 0.71 4230 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-01-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=1889431.4, rms=8.093 001: dt: 0.5000, sse=736956.4, rms=4.565 (43.587%) 002: dt: 0.5000, sse=576144.0, rms=3.821 (16.308%) rms = 3.8126/3.8209, sse=573752.8/576144.0, time step reduction 1 of 3 to 0.250 0 0 1 003: dt: 0.5000, sse=573752.8, rms=3.813 (0.217%) 004: dt: 0.2500, sse=341310.4, rms=2.326 (38.998%) 005: dt: 0.2500, sse=310760.8, rms=2.035 (12.498%) 006: dt: 0.2500, sse=306221.1, rms=1.960 (3.699%) 007: dt: 0.2500, sse=296036.5, rms=1.886 (3.744%) rms = 1.8664/1.8865, sse=294684.5/296036.5, time step reduction 2 of 3 to 0.125 0 0 1 008: dt: 0.2500, sse=294684.5, rms=1.866 (1.066%) 009: dt: 0.1250, sse=288963.8, rms=1.784 (4.417%) rms = 1.7687/1.7839, sse=289188.0/288963.8, time step reduction 3 of 3 to 0.062 0 1 1 010: dt: 0.1250, sse=289188.0, rms=1.769 (0.852%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 113.3447950; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 1630820 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=1 had to be increased for 292 vertices, nripped=8743 mean border=83.7, 86 (21) missing vertices, mean dist -0.2 [0.3 (%81.2)->0.3 (%18.8))] %87 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0876 min Finding expansion regions mean absolute distance = 0.30 +- 0.43 2743 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-01-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=838270.6, rms=4.897 011: dt: 0.5000, sse=514075.5, rms=3.328 (32.040%) rms = 3.7113/3.3280, sse=575404.8/514075.5, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 012: dt: 0.2500, sse=368887.2, rms=2.368 (28.840%) 013: dt: 0.2500, sse=325181.2, rms=1.870 (21.035%) 014: dt: 0.2500, sse=291555.5, rms=1.644 (12.098%) 015: dt: 0.2500, sse=285052.4, rms=1.572 (4.346%) rms = 1.5424/1.5724, sse=282547.5/285052.4, time step reduction 2 of 3 to 0.125 0 0 1 016: dt: 0.2500, sse=282547.5, rms=1.542 (1.904%) 017: dt: 0.1250, sse=275820.8, rms=1.455 (5.697%) rms = 1.4465/1.4546, sse=275952.1/275820.9, time step reduction 3 of 3 to 0.062 0 1 1 018: dt: 0.1250, sse=275952.1, rms=1.446 (0.554%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 113.3447950; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 1778344 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 265 vertices, nripped=8743 mean border=85.7, 162 (10) missing vertices, mean dist -0.1 [0.2 (%71.2)->0.2 (%28.8))] %90 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0476 min Finding expansion regions mean absolute distance = 0.20 +- 0.31 3152 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-01-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=425545.8, rms=2.859 rms = 3.1741/2.8588, sse=495003.9/425545.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=319090.3, rms=1.986 (30.515%) 020: dt: 0.2500, sse=281969.4, rms=1.495 (24.716%) 021: dt: 0.2500, sse=272448.3, rms=1.414 (5.426%) rms = 1.4032/1.4144, sse=271644.8/272448.3, time step reduction 2 of 3 to 0.125 0 0 1 022: dt: 0.2500, sse=271644.8, rms=1.403 (0.787%) 023: dt: 0.1250, sse=266360.1, rms=1.316 (6.198%) rms = 1.3093/1.3162, sse=263323.5/266360.1, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=263323.6, rms=1.309 (0.528%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 113.3447950; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 1850496 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 315 vertices, nripped=8743 mean border=86.3, 284 (8) missing vertices, mean dist -0.0 [0.2 (%55.1)->0.2 (%44.9))] %91 local maxima, % 2 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0304 min Finding expansion regions mean absolute distance = 0.18 +- 0.26 2916 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-01-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=275466.8, rms=1.510 rms = 1.8922/1.5100, sse=331299.0/275466.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=252616.2, rms=1.143 (24.308%) 026: dt: 0.2500, sse=251254.2, rms=1.040 (8.984%) rms = 1.0547/1.0402, sse=249854.6/251254.2, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 1.0296/1.0402, sse=250022.5/251254.2, time step reduction 3 of 3 to 0.062 0 0 1 027: dt: 0.1250, sse=250022.5, rms=1.030 (1.021%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.17 minutes Writing output to ../surf/lh.white #VMPC# mris_place_surfaces VmPeak 1920672 mris_place_surface done #-------------------------------------------- #@# WhiteSurfs rh Sun Sep 28 19:01:34 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof Reading in input surface ../surf/rh.white.preaparc Not smoothing input surface Area 271804 0.34540 0.13767 0.001336 2.3051 Corner 815412 60.00000 16.18199 0.202153 179.3497 Edge 407706 0.90806 0.22713 0.014448 3.3504 Hinge 407706 12.13161 13.88731 0.000001 179.9551 Reading in aparc ../label/rh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 1221 MRIclipBrightWM(): nthresh=34616, wmmin=5, clip=110 MRIfindBrightNonWM(): 90 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 1221 Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex.label MRISripNotLabel() ripped 7767/135904 vertices (128137 unripped) Reading in ripping surface ../surf/rh.white.preaparc Reading in aparc ../label/rh.aparc.annot for ripsurf [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Ripping BG MRISripBasalGanglia(): 1 -2 2 0.5 Ripping lateralorbitofrontal MRISripBasalGanglia(): 1 -2 2 0.5 ripped 731 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 67952: xyz = (55.3338,-24.9877,43.0442) oxyz = (55.3338,-24.9877,43.0442) wxzy = (55.3338,-24.9877,43.0442) pxyz = (0,0,0) CBVO Creating mask 135904 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 114.3447950; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 841808 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=2 had to be increased for 223 vertices, nripped=8498 mean border=79.5, 67 (67) missing vertices, mean dist 0.4 [0.6 (%12.2)->0.5 (%87.8))] %74 local maxima, %20 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1185 min Finding expansion regions mean absolute distance = 0.51 +- 0.69 3636 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-01-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=1887114.8, rms=8.124 001: dt: 0.5000, sse=728730.0, rms=4.536 (44.173%) 002: dt: 0.5000, sse=586051.3, rms=3.839 (15.363%) rms = 3.8563/3.8387, sse=579489.3/586051.3, time step reduction 1 of 3 to 0.250 0 0 1 RMS increased, rejecting step 003: dt: 0.2500, sse=407940.1, rms=2.821 (26.513%) 004: dt: 0.2500, sse=340050.7, rms=2.300 (18.461%) 005: dt: 0.2500, sse=310595.6, rms=2.051 (10.853%) 006: dt: 0.2500, sse=300323.1, rms=1.950 (4.910%) 007: dt: 0.2500, sse=293712.8, rms=1.882 (3.487%) rms = 1.8405/1.8819, sse=291446.3/293712.8, time step reduction 2 of 3 to 0.125 0 0 1 008: dt: 0.2500, sse=291446.3, rms=1.841 (2.196%) 009: dt: 0.1250, sse=283051.5, rms=1.759 (4.434%) rms = 1.7370/1.7589, sse=281662.2/283051.5, time step reduction 3 of 3 to 0.062 0 0 1 010: dt: 0.1250, sse=281662.2, rms=1.737 (1.245%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 114.3447950; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 1584172 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=1 had to be increased for 202 vertices, nripped=8498 mean border=83.4, 62 (10) missing vertices, mean dist -0.2 [0.3 (%80.4)->0.3 (%19.6))] %85 local maxima, % 8 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0855 min Finding expansion regions mean absolute distance = 0.29 +- 0.42 2730 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-01-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=844316.2, rms=4.965 011: dt: 0.5000, sse=499700.2, rms=3.311 (33.318%) rms = 3.7475/3.3107, sse=575424.4/499700.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 012: dt: 0.2500, sse=350513.8, rms=2.270 (31.447%) 013: dt: 0.2500, sse=300227.7, rms=1.758 (22.524%) 014: dt: 0.2500, sse=278197.1, rms=1.541 (12.375%) 015: dt: 0.2500, sse=274002.5, rms=1.484 (3.700%) rms = 1.4562/1.4838, sse=272514.1/274002.5, time step reduction 2 of 3 to 0.125 0 0 1 016: dt: 0.2500, sse=272514.1, rms=1.456 (1.857%) 017: dt: 0.1250, sse=264416.4, rms=1.352 (7.145%) rms = 1.3397/1.3522, sse=263728.4/264416.4, time step reduction 3 of 3 to 0.062 0 0 1 018: dt: 0.1250, sse=263728.4, rms=1.340 (0.920%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 114.3447950; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 1735540 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 232 vertices, nripped=8498 mean border=85.4, 117 (4) missing vertices, mean dist -0.1 [0.2 (%69.9)->0.2 (%30.1))] %90 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0465 min Finding expansion regions mean absolute distance = 0.20 +- 0.31 3006 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-01-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=414903.4, rms=2.821 rms = 3.1696/2.8209, sse=484440.0/414903.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=306714.6, rms=1.914 (32.157%) 020: dt: 0.2500, sse=267097.6, rms=1.406 (26.524%) 021: dt: 0.2500, sse=261053.8, rms=1.326 (5.726%) rms = 1.3151/1.3257, sse=260611.5/261053.8, time step reduction 2 of 3 to 0.125 0 0 1 022: dt: 0.2500, sse=260611.5, rms=1.315 (0.795%) 023: dt: 0.1250, sse=253702.2, rms=1.207 (8.257%) rms = 1.1961/1.2065, sse=253084.8/253702.2, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=253084.8, rms=1.196 (0.864%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.3447950; border_low = 68.0000000; outside_low = 58.2906300; outside_hi = 114.3447950; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 1835052 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 309 vertices, nripped=8498 mean border=86.0, 206 (3) missing vertices, mean dist -0.0 [0.2 (%54.7)->0.2 (%45.3))] %90 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0293 min Finding expansion regions mean absolute distance = 0.18 +- 0.27 2994 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-01-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=265824.7, rms=1.420 rms = 1.8782/1.4197, sse=323065.3/265824.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=242517.0, rms=1.019 (28.231%) 026: dt: 0.2500, sse=242505.7, rms=0.921 (9.631%) rms = 0.9499/0.9208, sse=240076.8/242505.7, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 0.9104/0.9208, sse=240923.5/242505.7, time step reduction 3 of 3 to 0.062 0 0 1 027: dt: 0.1250, sse=240923.5, rms=0.910 (1.126%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.08 minutes Writing output to ../surf/rh.white #VMPC# mris_place_surfaces VmPeak 1909968 mris_place_surface done #-------------------------------------------- #@# T1PialSurf lh Sun Sep 28 19:03:45 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white --restore-255 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white --restore-255 Reading in input surface ../surf/lh.white Not smoothing input surface Area 274572 0.34896 0.15270 0.000464 2.3854 Corner 823716 60.00000 17.67424 0.075916 179.2383 Edge 411858 0.91457 0.24678 0.007357 3.7394 Hinge 411858 12.49497 14.51665 0.000029 179.9481 Reading white surface coordinates from ../surf/lh.white Reading repulsion surface coordinates from ../surf/lh.white Reading in aparc ../label/lh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=34616, wmmin=5, clip=110 MRIfindBrightNonWM(): 90 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 66.7635 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex+hipamyg.label MRISripNotLabel() ripped 5365/137288 vertices (131923 unripped) INFO: rip surface needed but not specified, so using input surface Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=0 nspr=0.3 curv=1 vertex 68644: xyz = (-38.9815,-27.0111,11.8988) oxyz = (-38.9815,-27.0111,11.8988) wxzy = (-38.9815,-27.0111,11.8988) pxyz = (-38.9815,-27.0111,11.8988) CBVO Creating mask 137288 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.6552050; border_hi = 58.2906300; border_low = 38.8718950; outside_low = 10.0000000; outside_hi = 53.4359440; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 783352 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=2 had to be increased for 515 vertices, nripped=5365 mean border=56.9, 187 (187) missing vertices, mean dist 1.4 [1.2 (%0.0)->3.3 (%100.0))] % 9 local maxima, %33 large gradients and %54 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1166 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-01-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=23846888.0, rms=29.953 001: dt: 0.5000, sse=15298950.0, rms=23.931 (20.102%) 002: dt: 0.5000, sse=10071648.0, rms=19.346 (19.161%) 003: dt: 0.5000, sse=7339576.0, rms=16.446 (14.989%) 004: dt: 0.5000, sse=5902714.0, rms=14.691 (10.671%) 005: dt: 0.5000, sse=5007793.0, rms=13.481 (8.234%) 006: dt: 0.5000, sse=4267736.0, rms=12.391 (8.088%) 007: dt: 0.5000, sse=3576350.5, rms=11.277 (8.991%) 008: dt: 0.5000, sse=2986504.2, rms=10.231 (9.279%) 009: dt: 0.5000, sse=2497733.8, rms=9.274 (9.351%) 010: dt: 0.5000, sse=2095232.8, rms=8.404 (9.383%) 011: dt: 0.5000, sse=1747551.9, rms=7.571 (9.903%) 012: dt: 0.5000, sse=1461726.0, rms=6.810 (10.053%) 013: dt: 0.5000, sse=1231921.4, rms=6.130 (9.988%) 014: dt: 0.5000, sse=1077456.5, rms=5.625 (8.238%) 015: dt: 0.5000, sse=982360.2, rms=5.289 (5.981%) 016: dt: 0.5000, sse=929945.3, rms=5.091 (3.730%) 017: dt: 0.5000, sse=897011.2, rms=4.962 (2.542%) 018: dt: 0.5000, sse=879510.6, rms=4.890 (1.458%) 019: dt: 0.5000, sse=863384.5, rms=4.822 (1.378%) rms = 4.7819/4.8223, sse=854200.9/863384.5, time step reduction 1 of 3 to 0.250 0 0 1 020: dt: 0.5000, sse=854200.9, rms=4.782 (0.839%) 021: dt: 0.2500, sse=727576.8, rms=4.228 (11.582%) 022: dt: 0.2500, sse=695287.1, rms=4.078 (3.553%) rms = 4.0900/4.0778, sse=698526.6/695287.1, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 023: dt: 0.1250, sse=678561.7, rms=3.997 (1.971%) 024: dt: 0.1250, sse=655732.5, rms=3.883 (2.853%) rms = 3.8525/3.8834, sse=649821.0/655732.5, time step reduction 3 of 3 to 0.062 0 0 1 025: dt: 0.1250, sse=649821.0, rms=3.853 (0.793%) maximum number of reductions reached, breaking from loop positioning took 1.5 minutes done positioning surface Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.6552050; border_hi = 58.2906300; border_low = 38.8718950; outside_low = 10.0000000; outside_hi = 53.4359440; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 1213848 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=1 had to be increased for 16599 vertices, nripped=5365 mean border=56.0, 2329 (21) missing vertices, mean dist 0.1 [0.2 (%49.4)->0.6 (%50.6))] %18 local maxima, %27 large gradients and %49 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0278 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-01-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=801750.5, rms=4.267 rms = 4.6682/4.2674, sse=895056.0/801750.5, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 026: dt: 0.2500, sse=743647.4, rms=3.998 (6.316%) 027: dt: 0.2500, sse=729452.1, rms=3.930 (1.704%) rms = 3.9839/3.9297, sse=740350.3/729452.1, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 028: dt: 0.1250, sse=715656.7, rms=3.861 (1.740%) 029: dt: 0.1250, sse=696718.2, rms=3.765 (2.487%) rms = 3.7229/3.7653, sse=688387.4/696718.2, time step reduction 3 of 3 to 0.062 0 0 1 030: dt: 0.1250, sse=688387.4, rms=3.723 (1.127%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.6552050; border_hi = 58.2906300; border_low = 38.8718950; outside_low = 10.0000000; outside_hi = 53.4359440; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 1236640 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 17133 vertices, nripped=5365 mean border=55.6, 2650 (15) missing vertices, mean dist 0.1 [0.2 (%46.2)->0.5 (%53.8))] %29 local maxima, %16 large gradients and %50 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0163 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-01-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=717321.8, rms=3.858 rms = 4.3880/3.8578, sse=829254.5/717321.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 031: dt: 0.2500, sse=693952.3, rms=3.741 (3.026%) rms = 3.7472/3.7411, sse=694067.3/693952.3, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step rms = 3.7170/3.7411, sse=689243.9/693952.3, time step reduction 3 of 3 to 0.062 0 0 1 032: dt: 0.1250, sse=689243.9, rms=3.717 (0.643%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.6552050; border_hi = 58.2906300; border_low = 38.8718950; outside_low = 10.0000000; outside_hi = 53.4359440; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=137288 Gdiag_no=-1 VMPeak = 1248944 vno start=0, stop=137288 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 14147 vertices, nripped=5365 mean border=55.2, 6079 (14) missing vertices, mean dist 0.1 [0.2 (%44.7)->0.3 (%55.3))] %30 local maxima, %14 large gradients and %48 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0102 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-01-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=713014.5, rms=3.837 rms = 4.1941/3.8365, sse=783889.9/713014.5, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 033: dt: 0.2500, sse=687894.1, rms=3.712 (3.243%) 034: dt: 0.2500, sse=672886.4, rms=3.645 (1.797%) rms = 3.6914/3.6454, sse=680575.7/672886.4, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 035: dt: 0.1250, sse=663093.4, rms=3.593 (1.428%) 036: dt: 0.1250, sse=647751.1, rms=3.512 (2.258%) rms = 3.4741/3.5122, sse=640300.3/647751.1, time step reduction 3 of 3 to 0.062 0 0 1 037: dt: 0.1250, sse=640300.3, rms=3.474 (1.086%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Pinning medial wall to white surface Removing intersections removing intersecting faces 000: 7 intersecting terminating search with 0 intersecting #ET# mris_place_surface 2.69 minutes Writing output to ../surf/lh.pial.T1 #VMPC# mris_place_surfaces VmPeak 1271796 mris_place_surface done #-------------------------------------------- #@# T1PialSurf rh Sun Sep 28 19:06:31 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white --restore-255 8.0.0 8.0.0 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white --restore-255 Reading in input surface ../surf/rh.white Not smoothing input surface Area 271804 0.35014 0.15206 0.000197 2.3042 Corner 815412 60.00000 17.56917 0.117897 179.2725 Edge 407706 0.91615 0.24658 0.014448 3.5198 Hinge 407706 12.38792 14.49359 0.000029 179.9980 Reading white surface coordinates from ../surf/rh.white Reading repulsion surface coordinates from ../surf/rh.white Reading in aparc ../label/rh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=34616, wmmin=5, clip=110 MRIfindBrightNonWM(): 90 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 67.2635 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex+hipamyg.label MRISripNotLabel() ripped 4907/135904 vertices (130997 unripped) INFO: rip surface needed but not specified, so using input surface Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=0 nspr=0.3 curv=1 vertex 67952: xyz = (55.3123,-24.9694,43.0738) oxyz = (55.3123,-24.9694,43.0738) wxzy = (55.3123,-24.9694,43.0738) pxyz = (55.3123,-24.9694,43.0738) CBVO Creating mask 135904 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6552050; border_hi = 58.2906300; border_low = 38.8718950; outside_low = 10.0000000; outside_hi = 53.4359440; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 795568 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=2 had to be increased for 336 vertices, nripped=4907 mean border=56.8, 126 (126) missing vertices, mean dist 1.5 [0.4 (%0.0)->3.1 (%100.0))] % 9 local maxima, %38 large gradients and %49 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1121 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=c-01-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=23474646.0, rms=29.814 001: dt: 0.5000, sse=14812038.0, rms=23.620 (20.775%) 002: dt: 0.5000, sse=9561740.0, rms=18.902 (19.977%) 003: dt: 0.5000, sse=6866669.0, rms=15.944 (15.648%) 004: dt: 0.5000, sse=5472442.5, rms=14.171 (11.116%) 005: dt: 0.5000, sse=4623592.5, rms=12.973 (8.460%) 006: dt: 0.5000, sse=3936039.8, rms=11.912 (8.175%) 007: dt: 0.5000, sse=3305475.8, rms=10.848 (8.931%) 008: dt: 0.5000, sse=2770105.8, rms=9.855 (9.158%) 009: dt: 0.5000, sse=2337036.0, rms=8.970 (8.976%) 010: dt: 0.5000, sse=1964210.4, rms=8.131 (9.356%) 011: dt: 0.5000, sse=1654719.5, rms=7.361 (9.468%) 012: dt: 0.5000, sse=1391317.9, rms=6.635 (9.861%) 013: dt: 0.5000, sse=1185548.1, rms=6.008 (9.459%) 014: dt: 0.5000, sse=1037531.9, rms=5.510 (8.282%) 015: dt: 0.5000, sse=951228.2, rms=5.196 (5.702%) 016: dt: 0.5000, sse=894741.6, rms=4.979 (4.183%) 017: dt: 0.5000, sse=864184.2, rms=4.855 (2.490%) 018: dt: 0.5000, sse=838656.8, rms=4.749 (2.178%) rms = 4.7041/4.7488, sse=828674.9/838656.7, time step reduction 1 of 3 to 0.250 0 0 1 019: dt: 0.5000, sse=828674.9, rms=4.704 (0.941%) 020: dt: 0.2500, sse=697909.6, rms=4.116 (12.498%) 021: dt: 0.2500, sse=665440.8, rms=3.959 (3.807%) rms = 3.9411/3.9595, sse=662186.4/665440.7, time step reduction 2 of 3 to 0.125 0 0 1 022: dt: 0.2500, sse=662186.4, rms=3.941 (0.465%) 023: dt: 0.1250, sse=629398.7, rms=3.774 (4.240%) rms = 3.7391/3.7740, sse=622780.8/629398.7, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=622780.8, rms=3.739 (0.923%) maximum number of reductions reached, breaking from loop positioning took 1.4 minutes done positioning surface Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6552050; border_hi = 58.2906300; border_low = 38.8718950; outside_low = 10.0000000; outside_hi = 53.4359440; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 1202992 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=1 had to be increased for 14573 vertices, nripped=4907 mean border=55.8, 2181 (11) missing vertices, mean dist 0.1 [0.1 (%49.5)->0.6 (%50.5))] %20 local maxima, %30 large gradients and %45 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0277 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=c-01-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=780378.5, rms=4.196 rms = 4.5238/4.1964, sse=854410.2/780378.5, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=725347.2, rms=3.935 (6.238%) 026: dt: 0.2500, sse=707078.9, rms=3.844 (2.314%) rms = 3.8686/3.8435, sse=711698.8/707078.9, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 027: dt: 0.1250, sse=696229.6, rms=3.788 (1.442%) 028: dt: 0.1250, sse=680454.0, rms=3.706 (2.164%) rms = 3.6674/3.7061, sse=673014.7/680454.0, time step reduction 3 of 3 to 0.062 0 0 1 029: dt: 0.1250, sse=673014.7, rms=3.667 (1.046%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6552050; border_hi = 58.2906300; border_low = 38.8718950; outside_low = 10.0000000; outside_hi = 53.4359440; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 1226156 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 15022 vertices, nripped=4907 mean border=55.2, 2447 (7) missing vertices, mean dist 0.1 [0.2 (%43.4)->0.4 (%56.6))] %33 local maxima, %17 large gradients and %45 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0162 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=c-01-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=712463.1, rms=3.858 rms = 4.3067/3.8582, sse=805719.3/712463.1, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 030: dt: 0.2500, sse=683111.4, rms=3.709 (3.859%) rms = 3.6867/3.7093, sse=677863.7/683111.4, time step reduction 2 of 3 to 0.125 0 0 1 031: dt: 0.2500, sse=677863.7, rms=3.687 (0.610%) 032: dt: 0.1250, sse=660738.2, rms=3.595 (2.492%) rms = 3.5490/3.5948, sse=651948.8/660738.3, time step reduction 3 of 3 to 0.062 0 0 1 033: dt: 0.1250, sse=651948.8, rms=3.549 (1.273%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.6552050; border_hi = 58.2906300; border_low = 38.8718950; outside_low = 10.0000000; outside_hi = 53.4359440; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=135904 Gdiag_no=-1 VMPeak = 1245676 vno start=0, stop=135904 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 12563 vertices, nripped=4907 mean border=54.7, 5620 (3) missing vertices, mean dist 0.0 [0.2 (%46.4)->0.3 (%53.6))] %35 local maxima, %14 large gradients and %43 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0104 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=c-01-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=669118.3, rms=3.633 rms = 4.0412/3.6328, sse=747116.0/669118.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 034: dt: 0.2500, sse=652219.1, rms=3.544 (2.459%) rms = 3.5090/3.5435, sse=644230.7/652219.1, time step reduction 2 of 3 to 0.125 0 0 1 035: dt: 0.2500, sse=644230.7, rms=3.509 (0.973%) 036: dt: 0.1250, sse=628568.1, rms=3.422 (2.490%) 037: dt: 0.1250, sse=618381.9, rms=3.367 (1.607%) rms = 3.3452/3.3666, sse=614234.6/618381.9, time step reduction 3 of 3 to 0.062 0 0 1 038: dt: 0.1250, sse=614234.6, rms=3.345 (0.636%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Pinning medial wall to white surface Removing intersections removing intersecting faces 000: 4 intersecting terminating search with 0 intersecting #ET# mris_place_surface 2.56 minutes Writing output to ../surf/rh.pial.T1 #VMPC# mris_place_surfaces VmPeak 1267580 mris_place_surface done #@# white curv lh Sun Sep 28 19:09:10 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv insurf ../surf/lh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv type -1 #@# white area lh Sun Sep 28 19:09:11 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area writing curvature file ../surf/lh.area type -1 #@# pial curv lh Sun Sep 28 19:09:12 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial insurf ../surf/lh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv.pial type -1 #@# pial area lh Sun Sep 28 19:09:13 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial writing curvature file ../surf/lh.area.pial type -1 #@# thickness lh Sun Sep 28 19:09:14 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness 0 of 137288 vertices processed 25000 of 137288 vertices processed 50000 of 137288 vertices processed 75000 of 137288 vertices processed 100000 of 137288 vertices processed 125000 of 137288 vertices processed 0 of 137288 vertices processed 25000 of 137288 vertices processed 50000 of 137288 vertices processed 75000 of 137288 vertices processed 100000 of 137288 vertices processed 125000 of 137288 vertices processed thickness calculation complete, 110:647 truncations. 48309 vertices at 0 distance 105151 vertices at 1 distance 76370 vertices at 2 distance 29027 vertices at 3 distance 9749 vertices at 4 distance 3420 vertices at 5 distance 1265 vertices at 6 distance 498 vertices at 7 distance 224 vertices at 8 distance 120 vertices at 9 distance 67 vertices at 10 distance 71 vertices at 11 distance 74 vertices at 12 distance 65 vertices at 13 distance 46 vertices at 14 distance 28 vertices at 15 distance 24 vertices at 16 distance 28 vertices at 17 distance 16 vertices at 18 distance 9 vertices at 19 distance 15 vertices at 20 distance writing curvature file ../surf/lh.thickness type -1 #@# area and vertex vol lh Sun Sep 28 19:09:33 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12504 mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12496 mris_convert --volume sub-04P0G6LK_ses-00A lh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.volume mris_convert --volume sub-04P0G6LK_ses-00A lh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.volume masking with /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Total face volume 280240 Total vertex volume 280081 (mask=0) #@# sub-04P0G6LK_ses-00A lh 280081 vertexvol Done #@# white curv rh Sun Sep 28 19:09:34 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv insurf ../surf/rh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv type -1 #@# white area rh Sun Sep 28 19:09:35 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area writing curvature file ../surf/rh.area type -1 #@# pial curv rh Sun Sep 28 19:09:36 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial insurf ../surf/rh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv.pial type -1 #@# pial area rh Sun Sep 28 19:09:37 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial writing curvature file ../surf/rh.area.pial type -1 #@# thickness rh Sun Sep 28 19:09:38 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness 0 of 135904 vertices processed 25000 of 135904 vertices processed 50000 of 135904 vertices processed 75000 of 135904 vertices processed 100000 of 135904 vertices processed 125000 of 135904 vertices processed 0 of 135904 vertices processed 25000 of 135904 vertices processed 50000 of 135904 vertices processed 75000 of 135904 vertices processed 100000 of 135904 vertices processed 125000 of 135904 vertices processed thickness calculation complete, 176:765 truncations. 48312 vertices at 0 distance 106684 vertices at 1 distance 74803 vertices at 2 distance 27557 vertices at 3 distance 9088 vertices at 4 distance 3155 vertices at 5 distance 1125 vertices at 6 distance 423 vertices at 7 distance 175 vertices at 8 distance 120 vertices at 9 distance 76 vertices at 10 distance 72 vertices at 11 distance 51 vertices at 12 distance 28 vertices at 13 distance 33 vertices at 14 distance 20 vertices at 15 distance 17 vertices at 16 distance 9 vertices at 17 distance 12 vertices at 18 distance 21 vertices at 19 distance 27 vertices at 20 distance writing curvature file ../surf/rh.thickness type -1 #@# area and vertex vol rh Sun Sep 28 19:09:59 CDT 2025 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12484 mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12472 mris_convert --volume sub-04P0G6LK_ses-00A rh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.volume mris_convert --volume sub-04P0G6LK_ses-00A rh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.volume masking with /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Total face volume 278714 Total vertex volume 278551 (mask=0) #@# sub-04P0G6LK_ses-00A rh 278551 vertexvol Done #----------------------------------------- #@# Curvature Stats lh Sun Sep 28 19:10:00 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm sub-04P0G6LK_ses-00A lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-04P0G6LK_ses-00A/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 239 ] Gb_filter = 0 #----------------------------------------- #@# Curvature Stats rh Sun Sep 28 19:10:02 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm sub-04P0G6LK_ses-00A rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-04P0G6LK_ses-00A/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 259 ] Gb_filter = 0 #-------------------------------------------- #@# Cortical ribbon mask Sun Sep 28 19:10:03 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon sub-04P0G6LK_ses-00A SUBJECTS_DIR is /scratch/juno/dal247378/batches/batch_012 loading input data... Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/aseg.presurf.mgz Running hemis serially Processing left hemi computing distance to left white surface computing distance to left pial surface Processing right hemi computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 220 writing volume /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/ribbon.mgz mris_volmask took 5.27 minutes writing ribbon files #----------------------------------------- #@# Cortical Parc 2 lh Sun Sep 28 19:15:19 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-04P0G6LK_ses-00A lh ../surf/lh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 3.0 using min determinant for regularization = 0.088 0 singular and 0 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 76 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 22 labels changed using aseg relabeling using gibbs priors... 000: 9259 changed, 137288 examined... 001: 2076 changed, 36026 examined... 002: 650 changed, 11111 examined... 003: 287 changed, 3755 examined... 004: 149 changed, 1678 examined... 005: 92 changed, 878 examined... 006: 53 changed, 505 examined... 007: 21 changed, 299 examined... 008: 8 changed, 127 examined... 009: 7 changed, 53 examined... 010: 3 changed, 37 examined... 011: 0 changed, 17 examined... 10 labels changed using aseg 000: 248 total segments, 163 labels (2432 vertices) changed 001: 95 total segments, 12 labels (67 vertices) changed 002: 83 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 24 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... relabeling unknown label... 1095 vertices marked for relabeling... 1095 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 8 seconds. #----------------------------------------- #@# Cortical Parc 2 rh Sun Sep 28 19:15:28 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-04P0G6LK_ses-00A rh ../surf/rh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.021 0 singular and 0 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 76 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 21 labels changed using aseg relabeling using gibbs priors... 000: 9218 changed, 135904 examined... 001: 2129 changed, 35934 examined... 002: 607 changed, 11297 examined... 003: 292 changed, 3550 examined... 004: 147 changed, 1701 examined... 005: 78 changed, 886 examined... 006: 24 changed, 460 examined... 007: 18 changed, 163 examined... 008: 9 changed, 107 examined... 009: 8 changed, 62 examined... 010: 6 changed, 48 examined... 011: 3 changed, 38 examined... 012: 2 changed, 17 examined... 013: 1 changed, 10 examined... 014: 1 changed, 8 examined... 015: 0 changed, 7 examined... 6 labels changed using aseg 000: 233 total segments, 150 labels (2280 vertices) changed 001: 92 total segments, 11 labels (114 vertices) changed 002: 81 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 40 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... relabeling unknown label... 1233 vertices marked for relabeling... 1233 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 9 seconds. #----------------------------------------- #@# Cortical Parc 3 lh Sun Sep 28 19:15:36 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-04P0G6LK_ses-00A lh ../surf/lh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 383 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1486 labels changed using aseg relabeling using gibbs priors... 000: 1981 changed, 137288 examined... 001: 436 changed, 9402 examined... 002: 132 changed, 2555 examined... 003: 59 changed, 778 examined... 004: 34 changed, 334 examined... 005: 26 changed, 192 examined... 006: 15 changed, 140 examined... 007: 13 changed, 80 examined... 008: 7 changed, 69 examined... 009: 10 changed, 46 examined... 010: 9 changed, 52 examined... 011: 6 changed, 49 examined... 012: 12 changed, 31 examined... 013: 8 changed, 42 examined... 014: 8 changed, 42 examined... 015: 7 changed, 44 examined... 016: 4 changed, 34 examined... 017: 3 changed, 26 examined... 018: 3 changed, 20 examined... 019: 4 changed, 21 examined... 020: 4 changed, 20 examined... 021: 3 changed, 22 examined... 022: 3 changed, 16 examined... 023: 1 changed, 17 examined... 024: 1 changed, 7 examined... 025: 1 changed, 6 examined... 026: 2 changed, 7 examined... 027: 2 changed, 12 examined... 028: 0 changed, 11 examined... 319 labels changed using aseg 000: 53 total segments, 20 labels (326 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 3 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 814 vertices marked for relabeling... 814 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas.annot... classification took 0 minutes and 6 seconds. #----------------------------------------- #@# Cortical Parc 3 rh Sun Sep 28 19:15:43 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-04P0G6LK_ses-00A rh ../surf/rh.sphere.reg /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /opt/ohpc/pub/apps/freesurfer/8.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.009 0 singular and 325 ill-conditioned covariance matrices regularized reading surface from /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1549 labels changed using aseg relabeling using gibbs priors... 000: 2023 changed, 135904 examined... 001: 447 changed, 9355 examined... 002: 131 changed, 2591 examined... 003: 44 changed, 800 examined... 004: 19 changed, 262 examined... 005: 11 changed, 129 examined... 006: 6 changed, 72 examined... 007: 2 changed, 42 examined... 008: 3 changed, 13 examined... 009: 0 changed, 17 examined... 105 labels changed using aseg 000: 56 total segments, 23 labels (247 vertices) changed 001: 34 total segments, 1 labels (1 vertices) changed 002: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 1 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1182 vertices marked for relabeling... 1182 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas.annot... classification took 0 minutes and 6 seconds. #----------------------------------------- #@# WM/GM Contrast lh Sun Sep 28 19:15:49 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts pctsurfcon --s sub-04P0G6LK_ses-00A --lh-only Log file is /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts/pctsurfcon.log Sun Sep 28 19:15:50 CDT 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/pctsurfcon pctsurfcon 8.0.0 Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905325/lh.wm.mgh --regheader sub-04P0G6LK_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 -1 1 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 79343 Masking with /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905325/lh.wm.mgh Dim: 137288 1 1 mri_vol2surf done mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905325/lh.gm.mgh --projfrac 0.3 --regheader sub-04P0G6LK_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Done reading source surface Reading thickness /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface Projecting 0.3 0.3 1 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 95236 Masking with /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905325/lh.gm.mgh Dim: 137288 1 1 mri_vol2surf done mri_concat /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905325/lh.wm.mgh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905325/lh.gm.mgh --paired-diff-norm --mul 100 --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.w-g.pct.mgh mri_segstats --in /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.w-g.pct.mgh --annot sub-04P0G6LK_ses-00A lh aparc --sum /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/lh.w-g.pct.stats --snr 8.0.0 cwd cmdline mri_segstats --in /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.w-g.pct.mgh --annot sub-04P0G6LK_ses-00A lh aparc --sum /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/lh.w-g.pct.stats --snr sysname Linux hostname c-01-05 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.aparc.annot Seg base 1000 MRISannot2seg(): nhits = 129365 Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.w-g.pct.mgh Vertex Area is 0.697918 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up #----------------------------------------- #@# WM/GM Contrast rh Sun Sep 28 19:15:52 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts pctsurfcon --s sub-04P0G6LK_ses-00A --rh-only Log file is /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts/pctsurfcon.log Sun Sep 28 19:15:52 CDT 2025 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 cd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/pctsurfcon pctsurfcon 8.0.0 Linux c-01-05 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905441/rh.wm.mgh --regheader sub-04P0G6LK_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 -1 1 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 78987 Masking with /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905441/rh.wm.mgh Dim: 135904 1 1 mri_vol2surf done mri_vol2surf --mov /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905441/rh.gm.mgh --projfrac 0.3 --regheader sub-04P0G6LK_ses-00A --cortex srcvol = /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Reading surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Done reading source surface Reading thickness /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface Projecting 0.3 0.3 1 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 94947 Masking with /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905441/rh.gm.mgh Dim: 135904 1 1 mri_vol2surf done mri_concat /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905441/rh.wm.mgh /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/tmp.pctsurfcon.1905441/rh.gm.mgh --paired-diff-norm --mul 100 --o /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.w-g.pct.mgh mri_segstats --in /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.w-g.pct.mgh --annot sub-04P0G6LK_ses-00A rh aparc --sum /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/rh.w-g.pct.stats --snr 8.0.0 cwd cmdline mri_segstats --in /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.w-g.pct.mgh --annot sub-04P0G6LK_ses-00A rh aparc --sum /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/rh.w-g.pct.stats --snr sysname Linux hostname c-01-05 machine x86_64 user dal247378 whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.aparc.annot Seg base 2000 MRISannot2seg(): nhits = 128137 Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.w-g.pct.mgh Vertex Area is 0.700271 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up #----------------------------------------- #@# Relabel Hypointensities Sun Sep 28 19:15:54 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz reading input surface ../surf/lh.white... relabeling lh hypointensities... 1462 voxels changed to hypointensity... reading input surface ../surf/rh.white... relabeling rh hypointensities... 1130 voxels changed to hypointensity... 2021 hypointense voxels neighboring cortex changed #----------------------------------------- #@# APas-to-ASeg Sun Sep 28 19:16:04 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_surf2volseg --o aseg.mgz --i aseg.presurf.hypos.mgz --fix-presurf-with-ribbon /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/ribbon.mgz --threads 1 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial --rh-cortex-mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 outvol aseg.mgz 64 avail.processors, using 1 Loading aseg.presurf.hypos.mgz Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri/ribbon.mgz Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 0 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 919484 mri_surf2volseg done mri_brainvol_stats --subject sub-04P0G6LK_ses-00A ComputeBrainVolumeStats2 VoxelVol=1, KeepCSF=1 #CBVS2 MaskVol 1420727.0 #CBVS2 BrainSegVol 1370281.0 #CBVS2 BrainSegVolNotVent 1134963.0 #CBVS2 SupraTentVol 1226296.0 #CBVS2 SupraTentVolNotVent 990978.0 #CBVS2 lhWhiteVol 227617.6 #CBVS2 lhPialVol 507648.6 #CBVS2 lhCtxGM 280031.1 #CBVS2 rhWhiteVol 224691.7 #CBVS2 rhPialVol 503080.9 #CBVS2 rhCtxGM 278389.1 #CBVS2 lhCerebralWM 198530.5 #CBVS2 rhCerebralWM 196190.5 #CBVS2 SubCortGMVol 62647.0 #CBVS2 CerebellumVol 143985.0 #CBVS2 CerebellumGMVol 120842.0 #CBVS2 VentChorVol 7640.0 #CBVS2 3rd4th5thCSF 227678.0 #CBVS2 AllCSF 235318.0 #CBVS2 CCVol 3463.0 #----------------------------------------- #@# AParc-to-ASeg aparc Sun Sep 28 19:16:10 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_surf2volseg --o aparc+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.aparc.annot 1000 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.aparc.annot 2000 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 outvol aparc+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 7923 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.aparc.annot Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 7767 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 39347 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 900616 mri_surf2volseg done #----------------------------------------- #@# AParc-to-ASeg aparc.a2009s Sun Sep 28 19:18:11 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_surf2volseg --o aparc.a2009s+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.aparc.a2009s.annot 11100 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.aparc.a2009s.annot 12100 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 outvol aparc.a2009s+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 7923 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.aparc.a2009s.annot Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 7767 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.aparc.a2009s.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 39347 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 900704 mri_surf2volseg done #----------------------------------------- #@# AParc-to-ASeg aparc.DKTatlas Sun Sep 28 19:20:03 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_surf2volseg --o aparc.DKTatlas+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.aparc.DKTatlas.annot 1000 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.aparc.DKTatlas.annot 2000 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 outvol aparc.DKTatlas+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 7923 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.aparc.DKTatlas.annot Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 7767 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.aparc.DKTatlas.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 39347 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 900628 mri_surf2volseg done #----------------------------------------- #@# WMParc Sun Sep 28 19:21:39 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/mri mri_surf2volseg --o wmparc.mgz --label-wm --i aparc+aseg.mgz --threads 1 --lh-annot /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.aparc.annot 3000 --lh-cortex-mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label --lh-white /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white --lh-pial /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial --rh-annot /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.aparc.annot 4000 --rh-cortex-mask /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label --rh-white /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white --rh-pial /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 outvol wmparc.mgz 64 avail.processors, using 1 Loading aparc+aseg.mgz Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 7923 vertices from lh hemi Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.aparc.annot Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 7767 vertices from rh hemi Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 4492 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 900616 mri_surf2volseg done mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-04P0G6LK_ses-00A --surf-wm-vol --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/WMParcStatsLUT.txt --etiv --stiv /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/synthseg.tiv.dat setting seed for random number genererator to 1234 8.0.0 cwd cmdline mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-04P0G6LK_ses-00A --surf-wm-vol --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/WMParcStatsLUT.txt --etiv --stiv /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/synthseg.tiv.dat sysname Linux hostname c-01-05 machine x86_64 user dal247378 whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation Reporting on 70 segmentations Using PrintSegStat mri_segstats done #----------------------------------------- #@# Parcellation Stats lh Sun Sep 28 19:24:59 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-04P0G6LK_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 280240 Total vertex volume 280081 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 1532 1018 2585 2.651 0.419 0.092 0.017 10 0.9 bankssts 836 591 1862 2.619 1.010 0.127 0.029 11 1.0 caudalanteriorcingulate 4359 3027 9606 2.777 0.538 0.110 0.023 41 4.1 caudalmiddlefrontal 1944 1393 3139 2.167 0.473 0.144 0.036 27 2.6 cuneus 692 437 1896 3.165 0.732 0.093 0.029 4 0.7 entorhinal 4519 3113 9523 2.793 0.575 0.117 0.027 49 4.7 fusiform 6523 4646 14398 2.798 0.461 0.123 0.026 84 6.6 inferiorparietal 5377 3762 13290 2.990 0.633 0.114 0.027 65 5.2 inferiortemporal 1409 1023 2911 2.610 0.803 0.129 0.031 19 1.9 isthmuscingulate 9291 6296 14559 2.218 0.610 0.142 0.038 136 14.8 lateraloccipital 3605 2633 8943 2.957 0.615 0.137 0.034 54 5.4 lateralorbitofrontal 3767 2752 6962 2.369 0.592 0.149 0.042 58 5.9 lingual 2311 1687 4628 2.397 0.604 0.129 0.041 47 3.9 medialorbitofrontal 5771 3973 15489 3.064 0.631 0.113 0.024 78 5.5 middletemporal 938 603 2104 2.881 0.780 0.113 0.035 20 1.1 parahippocampal 1915 1336 4043 2.683 0.497 0.117 0.030 19 2.0 paracentral 2432 1813 5898 2.780 0.438 0.116 0.026 31 2.4 parsopercularis 1103 838 3111 2.823 0.551 0.133 0.034 20 1.3 parsorbitalis 2114 1574 5074 2.744 0.535 0.129 0.031 29 2.5 parstriangularis 1254 997 1639 1.920 0.478 0.156 0.046 18 2.3 pericalcarine 6344 4154 9934 2.146 0.593 0.106 0.024 62 6.0 postcentral 1467 1152 3219 2.612 0.806 0.131 0.030 20 2.0 posteriorcingulate 7983 5220 15950 2.678 0.521 0.105 0.021 70 6.7 precentral 5469 3899 11436 2.651 0.505 0.129 0.030 75 6.2 precuneus 1203 921 3131 2.947 0.859 0.152 0.046 32 2.4 rostralanteriorcingulate 9125 6907 20961 2.579 0.555 0.141 0.038 182 13.8 rostralmiddlefrontal 11291 8138 29040 3.013 0.591 0.123 0.029 125 12.5 superiorfrontal 7968 5474 15603 2.528 0.466 0.120 0.025 88 8.1 superiorparietal 6873 4530 16576 3.106 0.630 0.098 0.020 60 5.7 superiortemporal 5278 3674 11487 2.805 0.518 0.116 0.025 64 4.9 supramarginal 311 259 1118 3.040 0.522 0.173 0.069 13 0.5 frontalpole 448 367 1665 3.164 0.779 0.135 0.038 9 0.6 temporalpole 750 512 1613 2.943 0.446 0.129 0.029 9 0.8 transversetemporal 3163 2215 6688 2.969 0.849 0.129 0.040 50 4.9 insula mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-04P0G6LK_ses-00A lh pial computing statistics for each annotation in ../label/lh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 280240 Total vertex volume 280081 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 1532 949 2585 2.651 0.419 0.120 0.031 37 1.7 bankssts 836 805 1862 2.619 1.010 0.192 0.066 22 1.9 caudalanteriorcingulate 4359 3730 9606 2.777 0.538 0.152 0.063 303 6.7 caudalmiddlefrontal 1944 1616 3139 2.167 0.473 0.167 0.052 51 3.9 cuneus 692 881 1896 3.165 0.732 0.279 0.088 21 3.4 entorhinal 4519 3761 9523 2.793 0.575 0.164 0.050 109 9.1 fusiform 6523 5779 14398 2.798 0.461 0.156 0.040 153 10.6 inferiorparietal 5377 5130 13290 2.990 0.633 0.186 0.055 151 11.4 inferiortemporal 1409 1313 2911 2.610 0.803 0.208 0.066 66 3.7 isthmuscingulate 9291 7016 14559 2.218 0.610 0.133 0.037 198 13.4 lateraloccipital 3605 3416 8943 2.957 0.615 0.191 0.058 166 7.4 lateralorbitofrontal 3767 3441 6962 2.369 0.592 0.172 0.051 106 7.1 lingual 2311 2255 4628 2.397 0.604 0.192 0.057 59 5.5 medialorbitofrontal 5771 5916 15489 3.064 0.631 0.174 0.047 142 12.1 middletemporal 938 911 2104 2.881 0.780 0.201 0.059 22 2.4 parahippocampal 1915 1670 4043 2.683 0.497 0.150 0.040 45 3.3 paracentral 2432 2434 5898 2.780 0.438 0.176 0.042 40 4.3 parsopercularis 1103 1344 3111 2.823 0.551 0.190 0.036 17 1.8 parsorbitalis 2114 2041 5074 2.744 0.535 0.179 0.044 48 3.6 parstriangularis 1254 825 1639 1.920 0.478 0.131 0.043 30 1.7 pericalcarine 6344 5251 9934 2.146 0.593 0.148 0.037 87 9.9 postcentral 1467 1426 3219 2.612 0.806 0.208 0.075 129 3.8 posteriorcingulate 7983 6420 15950 2.678 0.521 0.135 0.033 153 10.9 precentral 5469 4658 11436 2.651 0.505 0.174 0.052 171 10.6 precuneus 1203 1206 3131 2.947 0.859 0.211 0.066 44 3.7 rostralanteriorcingulate 9125 9191 20961 2.579 0.555 0.192 0.047 218 17.9 rostralmiddlefrontal 11291 10747 29040 3.013 0.591 0.166 0.044 253 19.0 superiorfrontal 7968 6749 15603 2.528 0.466 0.157 0.041 194 13.3 superiorparietal 6873 6084 16576 3.106 0.630 0.157 0.046 138 12.1 superiortemporal 5278 4403 11487 2.805 0.518 0.155 0.041 128 8.4 supramarginal 311 479 1118 3.040 0.522 0.268 0.060 5 0.9 frontalpole 448 685 1665 3.164 0.779 0.240 0.047 12 0.9 temporalpole 750 623 1613 2.943 0.446 0.173 0.053 27 1.6 transversetemporal 3163 2268 6688 2.969 0.849 0.190 0.066 141 8.5 insula mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats rh Sun Sep 28 19:25:11 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-04P0G6LK_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 278714 Total vertex volume 278551 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 1596 1048 2697 2.611 0.376 0.092 0.019 14 1.2 bankssts 1277 1004 3203 2.646 0.864 0.142 0.034 18 2.2 caudalanteriorcingulate 3717 2702 8481 2.700 0.522 0.114 0.027 44 4.0 caudalmiddlefrontal 1982 1431 3274 2.125 0.528 0.141 0.036 27 2.6 cuneus 703 423 2006 3.263 0.881 0.099 0.029 6 0.7 entorhinal 4592 3226 10053 2.836 0.500 0.119 0.027 56 4.7 fusiform 8589 5981 19579 2.812 0.548 0.110 0.023 98 8.0 inferiorparietal 4818 3371 12333 2.945 0.620 0.112 0.025 61 4.4 inferiortemporal 1681 1243 3387 2.362 0.873 0.138 0.041 28 2.5 isthmuscingulate 7557 5183 12454 2.267 0.605 0.146 0.037 118 11.6 lateraloccipital 3511 2457 7776 2.903 0.638 0.121 0.029 41 3.8 lateralorbitofrontal 4385 3151 7616 2.282 0.629 0.138 0.035 56 5.8 lingual 2533 1783 5591 2.581 0.703 0.112 0.032 35 2.9 medialorbitofrontal 5337 3717 14339 3.149 0.637 0.106 0.023 57 4.5 middletemporal 984 639 1968 2.687 0.604 0.095 0.023 8 0.7 parahippocampal 1800 1211 3380 2.571 0.449 0.105 0.025 13 1.6 paracentral 1966 1338 4503 3.052 0.436 0.108 0.022 19 1.8 parsopercularis 1349 1034 3942 2.929 0.536 0.139 0.031 23 1.5 parsorbitalis 2403 1764 5790 2.837 0.544 0.125 0.028 34 2.6 parstriangularis 1611 1351 2195 1.890 0.584 0.173 0.054 22 3.9 pericalcarine 5929 3951 9466 2.136 0.638 0.107 0.023 60 5.2 postcentral 1537 1231 3291 2.496 0.676 0.147 0.036 27 2.4 posteriorcingulate 8106 5440 16436 2.738 0.510 0.108 0.024 67 7.8 precentral 6351 4473 12748 2.576 0.538 0.117 0.029 73 6.7 precuneus 887 681 2459 3.067 0.678 0.146 0.038 19 1.3 rostralanteriorcingulate 9575 7157 22189 2.585 0.555 0.130 0.030 142 11.9 rostralmiddlefrontal 9291 6697 23804 2.954 0.547 0.120 0.027 103 9.9 superiorfrontal 8603 6034 16231 2.400 0.482 0.118 0.027 103 8.8 superiorparietal 5939 3880 14715 3.239 0.616 0.096 0.021 47 4.8 superiortemporal 4673 3323 10631 2.841 0.543 0.122 0.026 56 5.2 supramarginal 473 407 1609 2.828 0.688 0.196 0.065 13 1.3 frontalpole 595 476 2596 3.257 1.028 0.145 0.037 10 1.0 temporalpole 560 385 1236 2.885 0.473 0.138 0.033 9 0.6 transversetemporal 3227 2179 6572 2.938 0.983 0.129 0.044 52 6.6 insula mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-04P0G6LK_ses-00A rh pial computing statistics for each annotation in ../label/rh.aparc.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 278714 Total vertex volume 278551 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 1596 1029 2697 2.611 0.376 0.138 0.040 221 2.3 bankssts 1277 1382 3203 2.646 0.864 0.195 0.051 35 2.5 caudalanteriorcingulate 3717 3411 8481 2.700 0.522 0.157 0.040 114 5.9 caudalmiddlefrontal 1982 1747 3274 2.125 0.528 0.166 0.049 57 3.8 cuneus 703 878 2006 3.263 0.881 0.265 0.090 28 2.6 entorhinal 4592 3939 10053 2.836 0.500 0.165 0.060 142 8.3 fusiform 8589 7714 19579 2.812 0.548 0.154 0.064 628 13.1 inferiorparietal 4818 4968 12333 2.945 0.620 0.178 0.045 111 9.1 inferiortemporal 1681 1659 3387 2.362 0.873 0.215 0.069 73 4.3 isthmuscingulate 7557 5979 12454 2.267 0.605 0.142 0.039 203 11.3 lateraloccipital 3511 2924 7776 2.903 0.638 0.176 0.054 128 7.0 lateralorbitofrontal 4385 3776 7616 2.282 0.629 0.161 0.044 102 7.8 lingual 2533 2542 5591 2.581 0.703 0.186 0.052 53 5.5 medialorbitofrontal 5337 5175 14339 3.149 0.637 0.159 0.037 83 8.5 middletemporal 984 842 1968 2.687 0.604 0.184 0.057 21 2.5 parahippocampal 1800 1402 3380 2.571 0.449 0.145 0.044 40 3.1 paracentral 1966 1607 4503 3.052 0.436 0.150 0.040 34 3.0 parsopercularis 1349 1635 3942 2.929 0.536 0.196 0.039 22 2.6 parsorbitalis 2403 2280 5790 2.837 0.544 0.169 0.042 88 4.3 parstriangularis 1611 1158 2195 1.890 0.584 0.143 0.042 49 2.3 pericalcarine 5929 4991 9466 2.136 0.638 0.146 0.035 82 8.9 postcentral 1537 1482 3291 2.496 0.676 0.196 0.058 56 3.7 posteriorcingulate 8106 6367 16436 2.738 0.510 0.133 0.034 154 10.6 precentral 6351 5298 12748 2.576 0.538 0.157 0.044 147 11.1 precuneus 887 939 2459 3.067 0.678 0.200 0.055 32 1.7 rostralanteriorcingulate 9575 9690 22189 2.585 0.555 0.180 0.044 214 17.5 rostralmiddlefrontal 9291 9046 23804 2.954 0.547 0.174 0.046 270 16.4 superiorfrontal 8603 7405 16231 2.400 0.482 0.150 0.038 157 12.9 superiorparietal 5939 5134 14715 3.239 0.616 0.146 0.038 104 9.4 superiortemporal 4673 4077 10631 2.841 0.543 0.163 0.047 131 8.3 supramarginal 473 769 1609 2.828 0.688 0.287 0.061 11 1.3 frontalpole 595 1022 2596 3.257 1.028 0.291 0.064 23 1.9 temporalpole 560 498 1236 2.885 0.473 0.158 0.053 13 1.0 transversetemporal 3227 2271 6572 2.938 0.983 0.188 0.070 140 9.7 insula mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 2 lh Sun Sep 28 19:25:22 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-04P0G6LK_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 280240 Total vertex volume 280081 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 1338 1064 2875 2.438 0.503 0.153 0.044 29 2.3 G_and_S_frontomargin 1916 1289 3769 2.553 0.538 0.126 0.030 27 2.3 G_and_S_occipital_inf 1870 1318 4124 2.605 0.458 0.131 0.034 22 2.3 G_and_S_paracentral 1530 1061 3500 2.793 0.532 0.130 0.029 21 1.6 G_and_S_subcentral 588 497 2019 2.874 0.582 0.157 0.048 18 0.9 G_and_S_transv_frontopol 2057 1533 4980 2.922 0.649 0.128 0.032 34 2.9 G_and_S_cingul-Ant 1111 777 2516 3.061 0.623 0.107 0.024 8 1.1 G_and_S_cingul-Mid-Ant 1324 904 2563 2.797 0.443 0.108 0.024 11 1.2 G_and_S_cingul-Mid-Post 580 442 1894 3.231 0.678 0.147 0.041 9 0.9 G_cingul-Post-dorsal 273 196 695 2.764 0.660 0.144 0.032 6 0.3 G_cingul-Post-ventral 1787 1289 2992 2.099 0.486 0.162 0.044 33 2.8 G_cuneus 1312 1019 4065 2.940 0.466 0.131 0.031 26 1.5 G_front_inf-Opercular 501 428 1905 3.124 0.372 0.160 0.043 11 0.9 G_front_inf-Orbital 1307 1004 3856 2.921 0.542 0.137 0.033 22 1.5 G_front_inf-Triangul 4584 3504 13491 2.858 0.590 0.146 0.042 116 6.9 G_front_middle 7077 5265 21568 3.181 0.610 0.136 0.034 98 9.1 G_front_sup 681 509 1477 2.868 0.985 0.146 0.049 13 1.2 G_Ins_lg_and_S_cent_ins 622 489 2313 3.402 0.879 0.166 0.058 17 1.4 G_insular_short 2538 1702 6022 2.714 0.573 0.131 0.036 42 3.0 G_occipital_middle 1579 1070 2889 2.233 0.574 0.129 0.029 20 2.0 G_occipital_sup 1824 1266 4907 2.991 0.547 0.124 0.031 29 2.1 G_oc-temp_lat-fusifor 2850 2066 5498 2.291 0.638 0.155 0.047 52 4.8 G_oc-temp_med-Lingual 1360 851 3412 2.913 0.876 0.111 0.036 24 1.7 G_oc-temp_med-Parahip 2189 1775 7379 3.054 0.610 0.161 0.047 58 4.2 G_orbital 2420 1754 6632 2.878 0.489 0.136 0.033 46 2.6 G_pariet_inf-Angular 2569 1820 7032 3.050 0.495 0.127 0.032 45 2.8 G_pariet_inf-Supramar 3190 2249 7891 2.677 0.518 0.133 0.030 49 3.9 G_parietal_sup 2524 1609 4126 2.085 0.521 0.112 0.025 33 2.7 G_postcentral 3042 1942 7756 2.903 0.509 0.111 0.025 37 2.8 G_precentral 3060 2266 7665 2.701 0.521 0.142 0.034 58 3.8 G_precuneus 930 737 2502 2.627 0.482 0.158 0.048 29 1.8 G_rectus 624 390 642 1.712 0.702 0.157 0.084 16 2.0 G_subcallosal 553 372 1317 2.876 0.470 0.115 0.028 6 0.5 G_temp_sup-G_T_transv 2378 1521 7994 3.546 0.598 0.119 0.028 35 2.5 G_temp_sup-Lateral 669 425 1625 3.253 0.660 0.071 0.015 2 0.4 G_temp_sup-Plan_polar 1113 765 2350 2.773 0.556 0.083 0.014 5 0.6 G_temp_sup-Plan_tempo 2712 1935 8240 3.154 0.643 0.129 0.034 48 3.2 G_temporal_inf 3208 2225 10612 3.249 0.617 0.123 0.029 61 3.3 G_temporal_middle 387 253 540 2.408 0.396 0.094 0.018 2 0.3 Lat_Fis-ant-Horizont 310 205 516 2.641 0.444 0.083 0.012 1 0.1 Lat_Fis-ant-Vertical 1228 800 1672 2.648 0.366 0.098 0.017 6 1.0 Lat_Fis-post 2675 1853 3115 1.744 0.595 0.181 0.060 55 7.3 Pole_occipital 1378 1070 4800 3.189 0.671 0.133 0.039 22 1.8 Pole_temporal 1540 1197 2195 2.272 0.596 0.136 0.032 14 2.2 S_calcarine 2956 1936 3371 1.992 0.477 0.090 0.017 13 2.1 S_central 1078 761 1710 2.483 0.388 0.115 0.024 9 1.1 S_cingul-Marginalis 516 342 952 3.235 0.426 0.091 0.018 2 0.4 S_circular_insula_ant 1445 949 2463 3.153 0.534 0.087 0.019 10 1.3 S_circular_insula_inf 1513 990 2256 2.845 0.382 0.102 0.020 7 1.4 S_circular_insula_sup 1302 858 1983 2.754 0.509 0.092 0.017 6 1.0 S_collat_transv_ant 536 417 758 2.040 0.329 0.160 0.030 7 0.7 S_collat_transv_post 2953 2054 4924 2.501 0.458 0.119 0.027 24 3.8 S_front_inf 1753 1301 3745 2.541 0.553 0.125 0.026 21 1.9 S_front_middle 3958 2712 7031 2.660 0.429 0.103 0.020 26 3.4 S_front_sup 249 184 455 2.649 0.471 0.131 0.025 3 0.4 S_interm_prim-Jensen 2666 1804 4121 2.521 0.374 0.111 0.020 20 2.5 S_intrapariet_and_P_trans 1410 952 1953 2.386 0.419 0.112 0.020 10 1.2 S_oc_middle_and_Lunatus 1525 1018 2156 2.415 0.377 0.105 0.019 10 1.3 S_oc_sup_and_transversal 934 641 1331 2.545 0.437 0.115 0.023 8 0.9 S_occipital_ant 1263 847 1763 2.558 0.448 0.110 0.020 8 1.2 S_oc-temp_lat 1567 1091 2725 2.792 0.477 0.109 0.025 9 1.5 S_oc-temp_med_and_Lingual 379 278 711 2.337 0.547 0.124 0.032 3 0.4 S_orbital_lateral 455 316 716 2.272 0.563 0.122 0.025 4 0.5 S_orbital_med-olfact 1595 1101 3073 2.797 0.619 0.123 0.027 17 1.8 S_orbital-H_Shaped 1687 1144 2558 2.488 0.451 0.106 0.019 11 1.5 S_parieto_occipital 1164 898 1265 1.747 0.650 0.139 0.031 20 1.8 S_pericallosal 3058 2017 4265 2.324 0.379 0.091 0.016 17 2.1 S_postcentral 1905 1266 3078 2.635 0.394 0.099 0.019 14 1.5 S_precentral-inf-part 1595 1040 2342 2.493 0.420 0.087 0.015 7 1.1 S_precentral-sup-part 741 528 1234 2.446 0.498 0.110 0.024 11 0.9 S_suborbital 1179 811 2022 2.628 0.486 0.111 0.023 8 1.1 S_subparietal 1647 1170 2820 2.773 0.500 0.105 0.019 12 1.3 S_temporal_inf 6607 4507 11607 2.719 0.440 0.101 0.019 45 5.3 S_temporal_sup 421 294 764 2.919 0.377 0.118 0.018 3 0.4 S_temporal_transverse mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 2 rh Sun Sep 28 19:25:28 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-04P0G6LK_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 278714 Total vertex volume 278551 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 979 761 2396 2.566 0.645 0.150 0.036 15 1.6 G_and_S_frontomargin 1367 986 3045 2.712 0.504 0.143 0.034 22 1.7 G_and_S_occipital_inf 1191 837 2505 2.366 0.522 0.128 0.038 15 1.4 G_and_S_paracentral 1316 902 3278 3.043 0.517 0.127 0.027 15 1.5 G_and_S_subcentral 1108 887 3391 2.839 0.609 0.152 0.039 22 1.9 G_and_S_transv_frontopol 2901 2091 6578 2.799 0.605 0.121 0.028 36 3.3 G_and_S_cingul-Ant 1434 1070 3352 2.861 0.548 0.129 0.031 17 2.2 G_and_S_cingul-Mid-Ant 1384 969 2814 2.751 0.415 0.114 0.024 13 1.5 G_and_S_cingul-Mid-Post 572 425 1700 2.957 0.660 0.156 0.045 12 0.9 G_cingul-Post-dorsal 331 238 945 2.767 0.751 0.156 0.045 7 0.6 G_cingul-Post-ventral 1938 1419 3131 2.020 0.603 0.162 0.045 33 3.5 G_cuneus 1339 949 4098 3.238 0.406 0.119 0.026 18 1.5 G_front_inf-Opercular 596 469 2011 3.198 0.509 0.156 0.042 16 0.9 G_front_inf-Orbital 917 689 2753 2.984 0.526 0.139 0.033 18 1.1 G_front_inf-Triangul 4225 3369 12974 2.797 0.579 0.143 0.037 84 5.9 G_front_middle 5418 4056 16805 3.108 0.555 0.132 0.034 80 6.8 G_front_sup 640 411 1500 3.138 1.009 0.134 0.055 13 1.9 G_Ins_lg_and_S_cent_ins 625 467 1986 3.219 0.992 0.143 0.053 13 1.1 G_insular_short 2255 1579 5945 2.844 0.566 0.138 0.033 41 2.7 G_occipital_middle 1858 1245 3674 2.397 0.582 0.133 0.036 32 2.5 G_occipital_sup 2207 1537 5661 2.891 0.508 0.128 0.031 39 2.4 G_oc-temp_lat-fusifor 2681 1969 5169 2.283 0.656 0.150 0.042 43 4.0 G_oc-temp_med-Lingual 1324 823 3279 2.904 0.898 0.104 0.032 16 1.2 G_oc-temp_med-Parahip 2603 2002 8158 3.024 0.632 0.152 0.040 52 3.8 G_orbital 2747 2016 8264 3.055 0.557 0.128 0.031 50 3.2 G_pariet_inf-Angular 2353 1723 6792 3.059 0.513 0.128 0.029 38 2.6 G_pariet_inf-Supramar 2779 2070 6741 2.479 0.540 0.138 0.036 51 3.3 G_parietal_sup 2120 1397 3545 2.007 0.536 0.114 0.026 30 1.9 G_postcentral 3087 2106 8231 2.933 0.508 0.114 0.028 34 3.0 G_precentral 3058 2239 7705 2.713 0.567 0.134 0.038 49 3.7 G_precuneus 788 594 2380 2.870 0.692 0.154 0.052 22 1.5 G_rectus 526 329 607 1.753 0.829 0.136 0.060 14 1.6 G_subcallosal 431 271 990 2.839 0.423 0.114 0.028 8 0.3 G_temp_sup-G_T_transv 1961 1270 6543 3.530 0.587 0.117 0.032 29 2.2 G_temp_sup-Lateral 870 571 2047 3.187 0.884 0.089 0.025 5 1.1 G_temp_sup-Plan_polar 900 594 1824 2.831 0.458 0.081 0.014 5 0.6 G_temp_sup-Plan_tempo 2581 1831 8081 3.144 0.579 0.122 0.028 44 2.5 G_temporal_inf 2857 2066 10134 3.419 0.623 0.126 0.031 50 2.9 G_temporal_middle 445 303 683 2.734 0.481 0.100 0.019 2 0.4 Lat_Fis-ant-Horizont 196 144 403 2.819 0.409 0.110 0.018 1 0.2 Lat_Fis-ant-Vertical 1274 834 1854 2.796 0.440 0.100 0.018 6 1.0 Lat_Fis-post 3137 2164 3951 1.839 0.585 0.159 0.050 57 6.5 Pole_occipital 1546 1212 6292 3.429 0.812 0.142 0.038 25 2.3 Pole_temporal 2000 1595 2685 2.065 0.500 0.141 0.035 18 3.4 S_calcarine 2919 1918 3375 2.047 0.538 0.098 0.020 14 2.6 S_central 969 665 1588 2.544 0.393 0.095 0.020 5 0.8 S_cingul-Marginalis 544 368 948 3.183 0.413 0.095 0.017 2 0.4 S_circular_insula_ant 1264 813 2129 3.311 0.664 0.085 0.016 5 1.0 S_circular_insula_inf 1264 842 2052 2.877 0.440 0.097 0.018 5 1.1 S_circular_insula_sup 1020 672 1618 2.799 0.435 0.092 0.016 4 0.7 S_collat_transv_ant 288 203 646 2.814 0.778 0.136 0.021 3 0.3 S_collat_transv_post 2265 1551 3771 2.500 0.405 0.105 0.018 14 1.9 S_front_inf 2959 2100 5238 2.416 0.471 0.115 0.025 30 2.9 S_front_middle 2917 2041 5451 2.634 0.480 0.105 0.024 30 2.9 S_front_sup 271 184 366 2.340 0.261 0.098 0.018 1 0.2 S_interm_prim-Jensen 3422 2340 5437 2.414 0.392 0.098 0.018 21 2.7 S_intrapariet_and_P_trans 877 602 1156 2.229 0.387 0.127 0.025 8 1.0 S_oc_middle_and_Lunatus 1451 1012 2124 2.329 0.378 0.133 0.028 16 1.6 S_oc_sup_and_transversal 807 542 1232 2.540 0.405 0.110 0.021 6 0.7 S_occipital_ant 1218 852 1951 2.539 0.403 0.111 0.026 11 1.2 S_oc-temp_lat 2209 1514 3540 2.653 0.403 0.100 0.019 11 1.8 S_oc-temp_med_and_Lingual 524 373 860 2.363 0.386 0.115 0.021 4 0.5 S_orbital_lateral 509 338 1006 2.788 0.887 0.092 0.018 3 0.3 S_orbital_med-olfact 1605 1113 2970 2.765 0.555 0.116 0.026 14 1.6 S_orbital-H_Shaped 2152 1442 3067 2.342 0.401 0.095 0.018 12 1.6 S_parieto_occipital 1632 1298 1952 1.785 0.652 0.140 0.035 28 2.6 S_pericallosal 2734 1803 3617 2.288 0.372 0.101 0.020 16 2.4 S_postcentral 2070 1354 3262 2.746 0.393 0.091 0.017 10 1.4 S_precentral-inf-part 1942 1323 2898 2.510 0.371 0.108 0.022 13 1.8 S_precentral-sup-part 312 210 539 2.402 0.585 0.071 0.014 1 0.2 S_suborbital 1777 1212 3124 2.581 0.508 0.106 0.021 13 1.5 S_subparietal 1434 970 2159 2.577 0.425 0.094 0.016 7 1.1 S_temporal_inf 7598 5001 13071 2.760 0.458 0.089 0.016 40 5.3 S_temporal_sup 319 238 503 2.567 0.414 0.132 0.024 2 0.4 S_temporal_transverse mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 3 lh Sun Sep 28 19:25:34 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-04P0G6LK_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 280240 Total vertex volume 280081 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 1709 1187 3955 2.865 0.833 0.126 0.031 21 2.2 caudalanteriorcingulate 4649 3231 10327 2.780 0.541 0.110 0.023 44 4.4 caudalmiddlefrontal 2619 1865 4212 2.207 0.458 0.137 0.032 35 3.2 cuneus 632 390 1748 3.139 0.785 0.091 0.028 3 0.6 entorhinal 4243 2910 8716 2.773 0.557 0.116 0.026 46 4.2 fusiform 6474 4595 14154 2.790 0.458 0.124 0.026 85 6.6 inferiorparietal 5299 3717 13616 3.025 0.634 0.117 0.028 67 5.4 inferiortemporal 1384 1003 2865 2.629 0.784 0.130 0.031 19 1.9 isthmuscingulate 9285 6287 14668 2.224 0.606 0.141 0.037 133 14.8 lateraloccipital 3972 2952 9751 2.788 0.747 0.148 0.042 82 6.7 lateralorbitofrontal 3883 2831 7122 2.358 0.592 0.148 0.042 59 6.0 lingual 1980 1430 4044 2.388 0.585 0.129 0.042 41 3.1 medialorbitofrontal 7462 5132 18313 2.965 0.613 0.110 0.022 90 6.7 middletemporal 971 625 2206 2.896 0.791 0.114 0.035 21 1.1 parahippocampal 2331 1622 4974 2.740 0.521 0.120 0.030 25 2.5 paracentral 2248 1669 5346 2.784 0.424 0.118 0.027 30 2.3 parsopercularis 998 750 2667 2.918 0.475 0.122 0.024 11 1.1 parsorbitalis 2708 2001 6585 2.739 0.557 0.125 0.030 33 3.3 parstriangularis 1287 1017 1665 1.895 0.479 0.159 0.047 19 2.4 pericalcarine 7224 4758 11403 2.186 0.589 0.109 0.024 71 7.0 postcentral 1640 1267 3464 2.605 0.789 0.126 0.029 21 2.0 posteriorcingulate 7767 5076 15619 2.698 0.515 0.105 0.021 69 6.5 precentral 5447 3902 11719 2.664 0.499 0.132 0.031 78 6.4 precuneus 1752 1313 4446 2.909 0.806 0.147 0.045 40 3.5 rostralanteriorcingulate 6972 5287 16293 2.580 0.549 0.143 0.040 149 10.9 rostralmiddlefrontal 11664 8534 29494 2.928 0.621 0.125 0.029 139 13.2 superiorfrontal 6299 4318 12498 2.553 0.477 0.117 0.024 66 6.1 superiorparietal 8328 5573 19864 3.049 0.656 0.101 0.022 75 7.1 superiortemporal 4850 3384 10723 2.830 0.512 0.115 0.026 60 4.6 supramarginal 744 508 1590 2.946 0.450 0.129 0.029 9 0.8 transversetemporal 2544 1799 6034 3.224 0.648 0.121 0.034 36 3.5 insula mris_anatomical_stats done #----------------------------------------- #@# Parcellation Stats 3 rh Sun Sep 28 19:25:39 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-04P0G6LK_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 278714 Total vertex volume 278551 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 1398 1090 3378 2.614 0.866 0.140 0.034 19 2.3 caudalanteriorcingulate 3961 2877 9013 2.699 0.519 0.115 0.027 46 4.4 caudalmiddlefrontal 2550 1805 4202 2.148 0.518 0.136 0.035 33 3.5 cuneus 642 392 1725 3.110 0.963 0.101 0.027 7 0.7 entorhinal 4300 3001 9299 2.833 0.487 0.118 0.027 53 4.3 fusiform 8367 5818 19024 2.807 0.538 0.110 0.023 93 7.8 inferiorparietal 5120 3598 13282 2.963 0.625 0.115 0.025 66 4.9 inferiortemporal 1699 1255 3500 2.386 0.875 0.137 0.040 30 2.5 isthmuscingulate 7570 5236 12371 2.243 0.600 0.146 0.038 120 11.5 lateraloccipital 4068 2964 9986 2.858 0.694 0.135 0.035 58 5.6 lateralorbitofrontal 4277 3067 7402 2.281 0.624 0.138 0.035 54 5.7 lingual 2054 1441 4504 2.497 0.825 0.130 0.043 41 3.6 medialorbitofrontal 6673 4596 16803 3.065 0.632 0.105 0.022 68 5.5 middletemporal 1082 711 2191 2.704 0.598 0.098 0.024 9 0.8 parahippocampal 1921 1302 3754 2.596 0.460 0.105 0.025 14 1.7 paracentral 2274 1584 5378 3.030 0.467 0.112 0.023 24 2.2 parsopercularis 1158 845 3058 2.984 0.537 0.130 0.030 17 1.2 parsorbitalis 2359 1709 5382 2.762 0.539 0.120 0.027 31 2.4 parstriangularis 1556 1323 2144 1.906 0.587 0.173 0.052 21 3.6 pericalcarine 6609 4415 10518 2.159 0.632 0.110 0.024 67 6.2 postcentral 1621 1283 3523 2.551 0.650 0.146 0.036 29 2.6 posteriorcingulate 7795 5220 15994 2.750 0.512 0.108 0.024 65 7.4 precentral 6480 4564 12961 2.557 0.546 0.118 0.030 74 7.0 precuneus 1072 811 2685 2.896 0.759 0.127 0.032 18 1.3 rostralanteriorcingulate 6896 5197 16233 2.588 0.548 0.131 0.031 106 8.3 rostralmiddlefrontal 12191 8835 29956 2.854 0.576 0.122 0.028 144 13.8 superiorfrontal 7207 5056 13918 2.424 0.476 0.117 0.027 88 7.2 superiorparietal 7509 4991 18771 3.133 0.716 0.102 0.025 74 7.6 superiortemporal 4448 3165 10192 2.849 0.533 0.121 0.026 54 4.8 supramarginal 562 382 1249 2.925 0.489 0.136 0.032 9 0.6 transversetemporal 2718 1842 6152 3.251 0.718 0.112 0.032 29 3.9 insula mris_anatomical_stats done #-------------------------------------------- #@# ASeg Stats Sun Sep 28 19:25:45 CDT 2025 /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --stiv /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/synthseg.tiv.dat --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/ASegStatsLUT.txt --subject sub-04P0G6LK_ses-00A setting seed for random number genererator to 1234 8.0.0 cwd cmdline mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --stiv /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/stats/synthseg.tiv.dat --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/ASegStatsLUT.txt --subject sub-04P0G6LK_ses-00A sysname Linux hostname c-01-05 machine x86_64 user dal247378 whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) Computing euler number orig.nofix lheno = -42, rheno = -40 orig.nofix lhholes = 22, rhholes = 21 Loading mri/aseg.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation Reporting on 45 segmentations Using PrintSegStat mri_segstats done /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label #-------------------------------------------- #@# BA_exvivo Labels lh Sun Sep 28 19:27:24 CDT 2025 mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA1_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 212 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.label 4341 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA2_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 314 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.label 8223 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA3a_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA3a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 18 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.label 4095 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA3b_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA3b_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 132 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.label 6115 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA4a_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA4a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 220 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.label 6004 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA4p_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA4p_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 66 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.label 4136 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA6_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA6_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 1113 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.label 14702 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA44_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA44_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 247 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.label 4428 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA45_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA45_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 806 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.label 4228 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.V1_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.V1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 761 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.label 5402 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.V2_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.V2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 2809 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.label 10923 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.MT_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.MT_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 516 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.label 2534 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.entorhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1290 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1290 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 58 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.label 1348 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.perirhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 42 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.label 1241 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.FG1.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.FG1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.FG1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 414 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 414 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 84 Checking for and removing duplicates Writing label file ./lh.FG1.mpm.vpnl.label 498 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.FG2.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.FG2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.FG2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 703 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 703 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 212 Checking for and removing duplicates Writing label file ./lh.FG2.mpm.vpnl.label 915 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.FG3.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.FG3.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.FG3.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1873 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1873 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 62 Checking for and removing duplicates Writing label file ./lh.FG3.mpm.vpnl.label 1935 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.FG4.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.FG4.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.FG4.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2101 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2101 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 547 Checking for and removing duplicates Writing label file ./lh.FG4.mpm.vpnl.label 2648 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.hOc1.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.hOc1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.hOc1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3877 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3877 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 398 Checking for and removing duplicates Writing label file ./lh.hOc1.mpm.vpnl.label 4275 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.hOc2.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.hOc2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.hOc2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2919 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2919 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 1192 Checking for and removing duplicates Writing label file ./lh.hOc2.mpm.vpnl.label 4111 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.hOc3v.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.hOc3v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1286 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1286 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 696 Checking for and removing duplicates Writing label file ./lh.hOc3v.mpm.vpnl.label 1982 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.hOc4v.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.hOc4v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1006 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1006 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 442 Checking for and removing duplicates Writing label file ./lh.hOc4v.mpm.vpnl.label 1448 mri_label2label: Done mris_label2annot --s sub-04P0G6LK_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt Number of ctab entries 9 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label cmdline mris_label2annot --s sub-04P0G6LK_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label sysname Linux hostname c-01-05 machine x86_64 user dal247378 subject sub-04P0G6LK_ses-00A hemi lh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.orig set_atable_from_ctable(): 9 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.FG1.mpm.vpnl.label 1 1376057 FG1.mpm.vpnl (57 255 20 255) 1 reading lh.FG2.mpm.vpnl.label 2 16711935 FG2.mpm.vpnl (255 0 255 255) 2 reading lh.FG3.mpm.vpnl.label 3 16711680 FG3.mpm.vpnl (0 0 255 255) 3 reading lh.FG4.mpm.vpnl.label 4 1705837 FG4.mpm.vpnl (109 7 26 255) 4 reading lh.hOc1.mpm.vpnl.label 5 25600 hOc1.mpm.vpnl (0 100 0 255) 5 reading lh.hOc2.mpm.vpnl.label 6 255 hOc2.mpm.vpnl (255 0 0 255) 6 reading lh.hOc3v.mpm.vpnl.label 7 16776960 hOc3v.mpm.vpnl (0 255 255 255) 7 reading lh.hOc4v.mpm.vpnl.label 8 65535 hOc4v.mpm.vpnl (255 255 0 255) ****** Vertices Mapped To Multiple Labels ****** Found 121828 unmapped vertices out of 137288 ********************************************** Mapping unhit to unknown Found 121828 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.mpm.vpnl.annot mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 111 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.thresh.label 1125 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 71 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.thresh.label 2163 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA3a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 7 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.thresh.label 1511 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA3b_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 28 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.thresh.label 2024 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA4a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 58 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.thresh.label 2377 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA4p_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 2 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.thresh.label 1551 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA6_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 376 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.thresh.label 7411 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA44_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 86 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.thresh.label 1998 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.BA45_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 336 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.thresh.label 1487 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.V1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 354 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.thresh.label 3759 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.V2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 1271 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.thresh.label 4605 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.MT_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 125 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.thresh.label 638 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 470 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 470 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 12 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.thresh.label 482 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/lh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./lh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 450 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 450 nlabel points Performing mapping from target back to the source label 137288 Number of reverse mapping hits = 22 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.thresh.label 472 mri_label2label: Done mris_label2annot --s sub-04P0G6LK_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label cmdline mris_label2annot --s sub-04P0G6LK_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname c-01-05 machine x86_64 user dal247378 subject sub-04P0G6LK_ses-00A hemi lh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.BA1_exvivo.label 1 1530880 BA1_exvivo (0 92 23 255) 1 reading lh.BA2_exvivo.label 2 16749699 BA2_exvivo (131 148 255 255) 2 reading lh.BA3a_exvivo.label 3 16711680 BA3a_exvivo (0 0 255 255) 3 reading lh.BA3b_exvivo.label 4 3368703 BA3b_exvivo (255 102 51 255) 4 reading lh.BA4a_exvivo.label 5 1376196 BA4a_exvivo (196 255 20 255) 5 reading lh.BA4p_exvivo.label 6 13382655 BA4p_exvivo (255 51 204 255) 6 reading lh.BA6_exvivo.label 7 10036737 BA6_exvivo (1 38 153 255) 7 reading lh.BA44_exvivo.label 8 2490521 BA44_exvivo (153 0 38 255) 8 reading lh.BA45_exvivo.label 9 39283 BA45_exvivo (115 153 0 255) 9 reading lh.V1_exvivo.label 10 3993 V1_exvivo (153 15 0 255) 10 reading lh.V2_exvivo.label 11 8508928 V2_exvivo (0 214 129 255) 11 reading lh.MT_exvivo.label 12 10027163 MT_exvivo (155 0 153 255) 12 reading lh.perirhinal_exvivo.label 13 16422433 perirhinal_exvivo (33 150 250 255) 13 reading lh.entorhinal_exvivo.label 14 16392598 entorhinal_exvivo (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 95139 unmapped vertices out of 137288 ********************************************** Mapping unhit to unknown Found 95139 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.BA_exvivo.annot mris_label2annot --s sub-04P0G6LK_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label cmdline mris_label2annot --s sub-04P0G6LK_ses-00A --hemi lh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname c-01-05 machine x86_64 user dal247378 subject sub-04P0G6LK_ses-00A hemi lh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.BA1_exvivo.thresh.label 1 1530880 BA1_exvivo.thresh (0 92 23 255) 1 reading lh.BA2_exvivo.thresh.label 2 16749699 BA2_exvivo.thresh (131 148 255 255) 2 reading lh.BA3a_exvivo.thresh.label 3 16711680 BA3a_exvivo.thresh (0 0 255 255) 3 reading lh.BA3b_exvivo.thresh.label 4 3368703 BA3b_exvivo.thresh (255 102 51 255) 4 reading lh.BA4a_exvivo.thresh.label 5 1376196 BA4a_exvivo.thresh (196 255 20 255) 5 reading lh.BA4p_exvivo.thresh.label 6 13382655 BA4p_exvivo.thresh (255 51 204 255) 6 reading lh.BA6_exvivo.thresh.label 7 10036737 BA6_exvivo.thresh (1 38 153 255) 7 reading lh.BA44_exvivo.thresh.label 8 2490521 BA44_exvivo.thresh (153 0 38 255) 8 reading lh.BA45_exvivo.thresh.label 9 39283 BA45_exvivo.thresh (115 153 0 255) 9 reading lh.V1_exvivo.thresh.label 10 3993 V1_exvivo.thresh (153 15 0 255) 10 reading lh.V2_exvivo.thresh.label 11 8508928 V2_exvivo.thresh (0 214 129 255) 11 reading lh.MT_exvivo.thresh.label 12 10027163 MT_exvivo.thresh (155 0 153 255) 12 reading lh.perirhinal_exvivo.thresh.label 13 16422433 perirhinal_exvivo.thresh (33 150 250 255) 13 reading lh.entorhinal_exvivo.thresh.label 14 16392598 entorhinal_exvivo.thresh (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 113411 unmapped vertices out of 137288 ********************************************** Mapping unhit to unknown Found 113411 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/lh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-04P0G6LK_ses-00A lh white computing statistics for each annotation in ./lh.BA_exvivo.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 280240 Total vertex volume 280081 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 1287 814 2266 2.160 0.530 0.134 0.034 21 1.8 BA1_exvivo 3952 2622 6381 2.372 0.461 0.098 0.018 28 3.1 BA2_exvivo 1002 667 994 1.934 0.352 0.127 0.026 8 1.0 BA3a_exvivo 2342 1558 3467 2.010 0.670 0.098 0.023 21 1.9 BA3b_exvivo 1548 1018 3687 2.844 0.447 0.103 0.027 13 1.5 BA4a_exvivo 1154 751 1840 2.448 0.369 0.088 0.018 5 0.9 BA4p_exvivo 10392 7134 25031 2.886 0.586 0.114 0.025 105 10.1 BA6_exvivo 2399 1729 5475 2.757 0.400 0.109 0.022 30 2.1 BA44_exvivo 3365 2535 8661 2.764 0.566 0.132 0.033 46 4.5 BA45_exvivo 2622 2025 3498 1.828 0.553 0.175 0.054 44 6.1 V1_exvivo 8550 5954 13249 2.167 0.578 0.150 0.040 131 13.8 V2_exvivo 2321 1574 4602 2.653 0.467 0.115 0.022 28 2.1 MT_exvivo 646 469 1876 3.235 0.593 0.125 0.037 6 0.7 perirhinal_exvivo 569 347 1486 3.009 0.971 0.077 0.022 3 0.5 entorhinal_exvivo mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-04P0G6LK_ses-00A lh white computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 280240 Total vertex volume 280081 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 875 524 1479 2.085 0.525 0.132 0.034 15 1.3 BA1_exvivo.thresh 1603 1055 2468 2.248 0.435 0.087 0.015 9 1.1 BA2_exvivo.thresh 845 559 759 1.887 0.307 0.129 0.026 7 0.9 BA3a_exvivo.thresh 1400 925 1560 1.620 0.340 0.080 0.016 8 0.9 BA3b_exvivo.thresh 1518 999 3386 2.776 0.467 0.099 0.024 11 1.4 BA4a_exvivo.thresh 922 616 1377 2.377 0.331 0.095 0.019 5 0.7 BA4p_exvivo.thresh 5554 3706 12995 2.894 0.562 0.111 0.024 54 5.2 BA6_exvivo.thresh 1504 1112 3565 2.713 0.387 0.112 0.023 22 1.3 BA44_exvivo.thresh 1391 1067 4123 2.924 0.571 0.138 0.034 23 1.7 BA45_exvivo.thresh 2807 2183 3802 1.839 0.555 0.174 0.054 47 6.5 V1_exvivo.thresh 4207 2957 5788 1.985 0.561 0.160 0.046 69 8.0 V2_exvivo.thresh 605 413 1377 2.782 0.497 0.123 0.027 7 0.6 MT_exvivo.thresh 301 210 1025 3.531 0.524 0.117 0.034 2 0.3 perirhinal_exvivo.thresh 345 220 1064 3.478 0.522 0.071 0.018 1 0.2 entorhinal_exvivo.thresh mris_anatomical_stats done #-------------------------------------------- #@# BA_exvivo Labels rh Sun Sep 28 19:29:04 CDT 2025 mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA1_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 105 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.label 4067 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA2_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 218 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.label 6905 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA3a_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA3a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 18 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.label 3998 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA3b_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA3b_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 58 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.label 4580 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA4a_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA4a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 163 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.label 5910 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA4p_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA4p_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 50 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.label 4523 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA6_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA6_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 859 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.label 13115 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA44_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA44_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 504 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.label 7416 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA45_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA45_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 756 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.label 6111 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.V1_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.V1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 685 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.label 5412 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.V2_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.V2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 1955 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.label 9971 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.MT_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.MT_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 343 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.label 2275 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.entorhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1038 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1038 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 119 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.label 1157 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.perirhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 62 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.label 814 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.FG1.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.FG1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.FG1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 541 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 541 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 243 Checking for and removing duplicates Writing label file ./rh.FG1.mpm.vpnl.label 784 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.FG2.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.FG2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.FG2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 721 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 721 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 284 Checking for and removing duplicates Writing label file ./rh.FG2.mpm.vpnl.label 1005 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.FG3.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.FG3.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.FG3.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1523 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1523 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 276 Checking for and removing duplicates Writing label file ./rh.FG3.mpm.vpnl.label 1799 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.FG4.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.FG4.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.FG4.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1586 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1586 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 402 Checking for and removing duplicates Writing label file ./rh.FG4.mpm.vpnl.label 1988 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.hOc1.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.hOc1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.hOc1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3667 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3667 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 435 Checking for and removing duplicates Writing label file ./rh.hOc1.mpm.vpnl.label 4102 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.hOc2.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.hOc2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.hOc2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2719 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2719 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 656 Checking for and removing duplicates Writing label file ./rh.hOc2.mpm.vpnl.label 3375 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.hOc3v.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.hOc3v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1228 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1228 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 438 Checking for and removing duplicates Writing label file ./rh.hOc3v.mpm.vpnl.label 1666 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.hOc4v.mpm.vpnl.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.hOc4v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1025 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1025 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 373 Checking for and removing duplicates Writing label file ./rh.hOc4v.mpm.vpnl.label 1398 mri_label2label: Done mris_label2annot --s sub-04P0G6LK_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt Number of ctab entries 9 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label cmdline mris_label2annot --s sub-04P0G6LK_ses-00A --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label sysname Linux hostname c-01-05 machine x86_64 user dal247378 subject sub-04P0G6LK_ses-00A hemi rh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.orig set_atable_from_ctable(): 9 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.FG1.mpm.vpnl.label 1 1376057 FG1.mpm.vpnl (57 255 20 255) 1 reading rh.FG2.mpm.vpnl.label 2 16711935 FG2.mpm.vpnl (255 0 255 255) 2 reading rh.FG3.mpm.vpnl.label 3 16711680 FG3.mpm.vpnl (0 0 255 255) 3 reading rh.FG4.mpm.vpnl.label 4 1705837 FG4.mpm.vpnl (109 7 26 255) 4 reading rh.hOc1.mpm.vpnl.label 5 25600 hOc1.mpm.vpnl (0 100 0 255) 5 reading rh.hOc2.mpm.vpnl.label 6 255 hOc2.mpm.vpnl (255 0 0 255) 6 reading rh.hOc3v.mpm.vpnl.label 7 16776960 hOc3v.mpm.vpnl (0 255 255 255) 7 reading rh.hOc4v.mpm.vpnl.label 8 65535 hOc4v.mpm.vpnl (255 255 0 255) ****** Vertices Mapped To Multiple Labels ****** Found 121356 unmapped vertices out of 135904 ********************************************** Mapping unhit to unknown Found 121356 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.mpm.vpnl.annot mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 49 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.thresh.label 925 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 63 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.thresh.label 2751 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA3a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 9 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.thresh.label 1707 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA3b_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 23 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.thresh.label 2206 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA4a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 5 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.thresh.label 1393 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA4p_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 11 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.thresh.label 1500 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA6_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 574 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.thresh.label 7533 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA44_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 58 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.thresh.label 1070 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.BA45_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 96 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.thresh.label 1274 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.V1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 344 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.thresh.label 3576 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.V2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 871 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.thresh.label 4308 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.MT_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 38 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.thresh.label 306 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 694 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 694 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 65 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.thresh.label 759 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject sub-04P0G6LK_ses-00A --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /scratch/juno/dal247378/batches/batch_012/fsaverage/label/rh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-04P0G6LK_ses-00A trglabel = ./rh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Loading source label. Found 291 points in source label. Starting surface-based mapping Reading source registration /scratch/juno/dal247378/batches/batch_012/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white Reading target registration /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 291 nlabel points Performing mapping from target back to the source label 135904 Number of reverse mapping hits = 23 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.thresh.label 314 mri_label2label: Done mris_label2annot --s sub-04P0G6LK_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label cmdline mris_label2annot --s sub-04P0G6LK_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname c-01-05 machine x86_64 user dal247378 subject sub-04P0G6LK_ses-00A hemi rh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.BA1_exvivo.label 1 1530880 BA1_exvivo (0 92 23 255) 1 reading rh.BA2_exvivo.label 2 16749699 BA2_exvivo (131 148 255 255) 2 reading rh.BA3a_exvivo.label 3 16711680 BA3a_exvivo (0 0 255 255) 3 reading rh.BA3b_exvivo.label 4 3368703 BA3b_exvivo (255 102 51 255) 4 reading rh.BA4a_exvivo.label 5 1376196 BA4a_exvivo (196 255 20 255) 5 reading rh.BA4p_exvivo.label 6 13382655 BA4p_exvivo (255 51 204 255) 6 reading rh.BA6_exvivo.label 7 10036737 BA6_exvivo (1 38 153 255) 7 reading rh.BA44_exvivo.label 8 2490521 BA44_exvivo (153 0 38 255) 8 reading rh.BA45_exvivo.label 9 39283 BA45_exvivo (115 153 0 255) 9 reading rh.V1_exvivo.label 10 3993 V1_exvivo (153 15 0 255) 10 reading rh.V2_exvivo.label 11 8508928 V2_exvivo (0 214 129 255) 11 reading rh.MT_exvivo.label 12 10027163 MT_exvivo (155 0 153 255) 12 reading rh.perirhinal_exvivo.label 13 16422433 perirhinal_exvivo (33 150 250 255) 13 reading rh.entorhinal_exvivo.label 14 16392598 entorhinal_exvivo (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 95865 unmapped vertices out of 135904 ********************************************** Mapping unhit to unknown Found 95865 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.BA_exvivo.annot mris_label2annot --s sub-04P0G6LK_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt Number of ctab entries 15 8.0.0 cwd /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label cmdline mris_label2annot --s sub-04P0G6LK_ses-00A --hemi rh --ctab /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname c-01-05 machine x86_64 user dal247378 subject sub-04P0G6LK_ses-00A hemi rh SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_012 ColorTable /opt/ohpc/pub/apps/freesurfer/8.0.0/average/colortable_BA_thresh.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.BA1_exvivo.thresh.label 1 1530880 BA1_exvivo.thresh (0 92 23 255) 1 reading rh.BA2_exvivo.thresh.label 2 16749699 BA2_exvivo.thresh (131 148 255 255) 2 reading rh.BA3a_exvivo.thresh.label 3 16711680 BA3a_exvivo.thresh (0 0 255 255) 3 reading rh.BA3b_exvivo.thresh.label 4 3368703 BA3b_exvivo.thresh (255 102 51 255) 4 reading rh.BA4a_exvivo.thresh.label 5 1376196 BA4a_exvivo.thresh (196 255 20 255) 5 reading rh.BA4p_exvivo.thresh.label 6 13382655 BA4p_exvivo.thresh (255 51 204 255) 6 reading rh.BA6_exvivo.thresh.label 7 10036737 BA6_exvivo.thresh (1 38 153 255) 7 reading rh.BA44_exvivo.thresh.label 8 2490521 BA44_exvivo.thresh (153 0 38 255) 8 reading rh.BA45_exvivo.thresh.label 9 39283 BA45_exvivo.thresh (115 153 0 255) 9 reading rh.V1_exvivo.thresh.label 10 3993 V1_exvivo.thresh (153 15 0 255) 10 reading rh.V2_exvivo.thresh.label 11 8508928 V2_exvivo.thresh (0 214 129 255) 11 reading rh.MT_exvivo.thresh.label 12 10027163 MT_exvivo.thresh (155 0 153 255) 12 reading rh.perirhinal_exvivo.thresh.label 13 16422433 perirhinal_exvivo.thresh (33 150 250 255) 13 reading rh.entorhinal_exvivo.thresh.label 14 16392598 entorhinal_exvivo.thresh (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 114129 unmapped vertices out of 135904 ********************************************** Mapping unhit to unknown Found 114129 unhit vertices Writing annot to /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/label/rh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-04P0G6LK_ses-00A rh white computing statistics for each annotation in ./rh.BA_exvivo.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 278714 Total vertex volume 278551 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 943 620 1807 2.158 0.593 0.142 0.037 18 1.1 BA1_exvivo 3405 2254 5004 2.235 0.399 0.102 0.021 28 2.9 BA2_exvivo 1034 693 1038 2.016 0.433 0.127 0.028 8 1.2 BA3a_exvivo 1869 1235 2477 1.771 0.539 0.094 0.021 14 1.4 BA3b_exvivo 1409 935 3057 2.651 0.407 0.106 0.025 11 1.3 BA4a_exvivo 1137 755 1942 2.549 0.366 0.092 0.022 5 1.0 BA4p_exvivo 8212 5739 19653 2.879 0.528 0.114 0.026 80 8.3 BA6_exvivo 3780 2550 8123 2.964 0.466 0.101 0.019 28 3.2 BA44_exvivo 4378 3230 10864 2.807 0.543 0.129 0.030 66 4.9 BA45_exvivo 3048 2440 4401 1.904 0.630 0.165 0.052 45 7.1 V1_exvivo 7741 5396 11982 2.107 0.575 0.148 0.040 121 12.3 V2_exvivo 2035 1413 3781 2.591 0.459 0.123 0.025 22 2.2 MT_exvivo 371 264 1110 3.295 0.623 0.118 0.030 4 0.4 perirhinal_exvivo 677 413 1817 3.156 0.905 0.088 0.022 5 0.5 entorhinal_exvivo mris_anatomical_stats done mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-04P0G6LK_ses-00A rh white computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot. reading input surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white... reading input pial surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.pial... reading input white surface /scratch/juno/dal247378/batches/batch_012/sub-04P0G6LK_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 278714 Total vertex volume 278551 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1462729 mm^3 (det: 1.331829 ) 685 436 1143 1.956 0.619 0.133 0.033 14 0.8 BA1_exvivo.thresh 1830 1208 2854 2.185 0.428 0.096 0.018 14 1.3 BA2_exvivo.thresh 932 619 834 1.981 0.383 0.129 0.027 7 1.2 BA3a_exvivo.thresh 1464 990 1632 1.607 0.336 0.082 0.015 6 0.9 BA3b_exvivo.thresh 769 533 1705 2.533 0.447 0.126 0.034 9 0.9 BA4a_exvivo.thresh 970 650 1563 2.505 0.338 0.091 0.020 4 0.8 BA4p_exvivo.thresh 5462 3756 12944 2.890 0.538 0.117 0.027 56 5.7 BA6_exvivo.thresh 885 611 2379 3.230 0.440 0.109 0.020 9 0.8 BA44_exvivo.thresh 1042 804 3060 2.951 0.514 0.137 0.033 17 1.2 BA45_exvivo.thresh 2846 2320 4093 1.913 0.631 0.170 0.052 43 6.9 V1_exvivo.thresh 3958 2765 5350 1.897 0.543 0.151 0.044 63 7.0 V2_exvivo.thresh 281 206 538 2.407 0.363 0.110 0.021 3 0.2 MT_exvivo.thresh 33 30 141 3.571 0.643 0.124 0.031 0 0.0 perirhinal_exvivo.thresh 618 405 1930 3.451 0.651 0.094 0.023 5 0.5 entorhinal_exvivo.thresh mris_anatomical_stats done Started at Sun Sep 28 17:46:17 CDT 2025 Ended at Sun Sep 28 19:30:41 CDT 2025 #@#%# recon-all-run-time-hours 1.740 recon-all -s sub-04P0G6LK_ses-00A finished without error at Sun Sep 28 19:30:41 CDT 2025 #New# invocation of recon-all Tue Apr 21 13:09:40 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/recon-all -s sub-04P0G6LK_ses-00A -localGI subjid sub-04P0G6LK_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Actual FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 build-stamp.txt: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-03-14 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 8192 kbytes maxproc 1545830 maxlocks unlimited maxsignal 1545830 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 377Gi 34Gi 180Gi 19Gi 184Gi 343Gi Swap: 0B 0B 0B SLURM_JOB_ID 174833 ######################################## program versions used 8.0.0 (freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a) 8.0.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mris_convert -all-info ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:40-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_motion_correct.fsl 8.0.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:41-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-03-14 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ####################################### GCADIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### Tue Apr 21 13:09:41 CDT 2026 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg --i /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri/synthstrip.mgz --t /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --affine-only --o /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305 --threads 1 -rwxr-x--- 1 root kdamme 30890 May 28 2025 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-03-14 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 2439622 /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305 /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A To check affine registration tkregisterfv --mov /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri/synthstrip.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --reg /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri/transforms/synthmorph.mni305/aff.lta AffineOnly specified, so exiting now Started at Tue Apr 21 13:09:41 CDT 2026 Ended at Tue Apr 21 13:09:41 CDT 2026 Fs-Synthmorph-Reg-Run-Time-Sec 0 Fs-Synthmorph-Reg-Run-Time-Min 0.00 Fs-Synthmorph-Reg-Run-Time-Hours 0.00 fs-synthmorph-reg Done 8.0.0 --ltavox2vox: output LTA as VOX_TO_VOX transform. --inlta: synthmorph.mni305/aff.lta input LTA transform. --outlta: talairach.xfm.lta output LTA. LTA read, type : 1 1.02182 0.03004 0.03010 4.03056; -0.05145 1.11621 0.12681 -5.39721; -0.03988 -0.11778 1.15155 5.11603; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file talairach.xfm.lta... lta_convert successful. 8.0.0 --inlta: talairach.xfm.lta input LTA transform. --outmni: talairach.xfm output MNI/XFM matrix. LTA read, type : 1 1.02182 0.03004 0.03010 4.03056; -0.05145 1.11621 0.12681 -5.39721; -0.03988 -0.11778 1.15155 5.11604; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. fs-synthmorph-reg --s sub-04P0G6LK_ses-00A --threads 1 --i /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri/orig.mgz --test fs-synthmorph-reg: update not needed #-------------------------------------- #@# MCADura Segmentation Tue Apr 21 13:09:41 CDT 2026 MCADura Segmentation does not need to be updated #-------------------------------------- #@# VSinus Segmentation Tue Apr 21 13:09:41 CDT 2026 VSinus Segmentation does not need to be updated #-------------------------------------- #@# EntoWM Segmentation Tue Apr 21 13:09:41 CDT 2026 EntoWM Segmentation does not need to be updated 1 3006 651 670.9117 wm-lh-entorhinal 2 3201 218 225.3284 wm-lh-gyrus-ambiens 3 4006 909 930.0598 wm-rh-entorhinal 4 4201 279 287.6851 wm-rh-gyrus-ambiens #-------------------------------------- #@# CC Seg Tue Apr 21 13:09:41 CDT 2026 seg2cc --s sub-04P0G6LK_ses-00A Tue Apr 21 13:09:42 CDT 2026 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/seg2cc --s sub-04P0G6LK_ses-00A freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a seg2cc 8.0.0 Linux c-03-14 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A IsConformed yes Tue Apr 21 13:09:42 CDT 2026 mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta transforms/cc_up.lta sub-04P0G6LK_ses-00A will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as transforms/cc_up.lta reading aseg from /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri/aseg.auto_noCCseg.mgz reading norm from /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri/norm.mgz 18282 voxels in left wm, 42051 in right wm, xrange [128, 135] searching rotation angles z=[-9 5], y=[-9 5] searching scale 1 Z rot -8.9 searching scale 1 Z rot -8.7 searching scale 1 Z rot -8.4 searching scale 1 Z rot -8.2 searching scale 1 Z rot -7.9 searching scale 1 Z rot -7.7 searching scale 1 Z rot -7.4 searching scale 1 Z rot -7.2 searching scale 1 Z rot -6.9 searching scale 1 Z rot -6.7 searching scale 1 Z rot -6.4 searching scale 1 Z rot -6.2 searching scale 1 Z rot -5.9 searching scale 1 Z rot -5.7 searching scale 1 Z rot -5.4 searching scale 1 Z rot -5.2 searching scale 1 Z rot -4.9 searching scale 1 Z rot -4.7 searching scale 1 Z rot -4.4 searching scale 1 Z rot -4.2 searching scale 1 Z rot -3.9 searching scale 1 Z rot -3.7 searching scale 1 Z rot -3.4 searching scale 1 Z rot -3.2 searching scale 1 Z rot -2.9 searching scale 1 Z rot -2.7 searching scale 1 Z rot -2.4 searching scale 1 Z rot -2.2 searching scale 1 Z rot -1.9 searching scale 1 Z rot -1.7 searching scale 1 Z rot -1.4 searching scale 1 Z rot -1.2 searching scale 1 Z rot -0.9 searching scale 1 Z rot -0.7 searching scale 1 Z rot -0.4 searching scale 1 Z rot -0.2 searching scale 1 Z rot 0.1 searching scale 1 Z rot 0.3 searching scale 1 Z rot 0.6 searching scale 1 Z rot 0.8 searching scale 1 Z rot 1.1 searching scale 1 Z rot 1.3 searching scale 1 Z rot 1.6 searching scale 1 Z rot 1.8 searching scale 1 Z rot 2.1 searching scale 1 Z rot 2.3 searching scale 1 Z rot 2.6 searching scale 1 Z rot 2.8 searching scale 1 Z rot 3.1 searching scale 1 Z rot 3.3 searching scale 1 Z rot 3.6 searching scale 1 Z rot 3.8 searching scale 1 Z rot 4.1 searching scale 1 Z rot 4.3 searching scale 1 Z rot 4.6 searching scale 1 Z rot 4.8 global minimum found at slice 132.5, rotations (-1.63, -1.93) final transformation (x=132.5, yr=-1.635, zr=-1.931): 0.99903 0.03370 -0.02851 -4.17715; -0.03368 0.99943 0.00096 50.40986; 0.02853 0.00000 0.99959 22.26294; 0.00000 0.00000 0.00000 1.00000; updating x range to be [126, 129] in xformed coordinates best xformed slice 128 min_x_fornix = 131 WARNING: min_x_fornix not set WARNING: min_x_fornix not set WARNING: min_x_fornix not set WARNING: min_x_fornix not set cc center is found at 128 82 102 eigenvectors: 0.00055 -0.01255 0.99992; 0.00712 -0.99990 -0.01255; 0.99997 0.00713 -0.00046; error in mid anterior detected - correcting... writing aseg with callosum to /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri/aseg.auto.mgz... corpus callosum segmentation took 0.3 minutes #VMPC# mri_cc VmPeak 431616 mri_cc done Tue Apr 21 13:09:58 CDT 2026 /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A Started at Tue Apr 21 13:09:42 CDT 2026 Ended at Tue Apr 21 13:09:58 CDT 2026 Seg2cc-Run-Time-Sec 16 Seg2cc-Run-Time-Hours 0.00 seg2cc Done #-------------------------------------- #@# Merge ASeg Tue Apr 21 13:09:58 CDT 2026 cp aseg.auto.mgz aseg.presurf.mgz #@# white curv lh Tue Apr 21 13:09:58 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv Update not needed #@# white area lh Tue Apr 21 13:09:58 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area writing curvature file ../surf/lh.area type -1 #@# pial curv lh Tue Apr 21 13:09:59 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial insurf ../surf/lh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv.pial type -1 #@# pial area lh Tue Apr 21 13:10:00 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial writing curvature file ../surf/lh.area.pial type -1 #@# thickness lh Tue Apr 21 13:10:01 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness Update not needed #@# area and vertex vol lh Tue Apr 21 13:10:01 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12496 mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12496 mris_convert --volume sub-04P0G6LK_ses-00A lh /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/lh.volume mris_convert --volume sub-04P0G6LK_ses-00A lh /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/lh.volume masking with /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/label/lh.cortex.label Total face volume 280240 Total vertex volume 280081 (mask=0) #@# sub-04P0G6LK_ses-00A lh 280081 vertexvol Done #@# white curv rh Tue Apr 21 13:10:02 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv Update not needed #@# white area rh Tue Apr 21 13:10:02 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area Update not needed #@# pial curv rh Tue Apr 21 13:10:02 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial insurf ../surf/rh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv.pial type -1 #@# pial area rh Tue Apr 21 13:10:03 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial writing curvature file ../surf/rh.area.pial type -1 #@# thickness rh Tue Apr 21 13:10:04 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness Update not needed #@# area and vertex vol rh Tue Apr 21 13:10:04 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/mri /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12472 mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12476 mris_convert --volume sub-04P0G6LK_ses-00A rh /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/rh.volume mris_convert --volume sub-04P0G6LK_ses-00A rh /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/rh.volume masking with /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/label/rh.cortex.label Total face volume 278714 Total vertex volume 278551 (mask=0) #@# sub-04P0G6LK_ses-00A rh 278551 vertexvol Done /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf #-------------------------------------------- #@# Local Gyrification Index lh Tue Apr 21 13:10:05 CDT 2026 mris_compute_lgi --i lh.pial ================= rm -Rf /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= MATLAB is selecting SOFTWARE rendering. Command `client-v1` threw an exception fl:filesystem:FileExistsError < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 61954 voxel in cpt #1: X=2 [v=61954,e=185856,f=123904] located at (-30.957895, -31.808598, 36.085789) For the whole surface: X=2 [v=61954,e=185856,f=123904] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 61954 - 185856 + 123904 = 2 --> 0 holes F =2V-4: 123904 = 123908-4 (0) 2E=3F: 371712 = 371712 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= mris_convert -n lh.pial-outer-smoothed /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc Reading in lh.pial-outer-smoothed Outputting normals /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial','/tmp/tmp.qjOX0i.m'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.05 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 20.8900 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial','/tmp/tmp.FJ0fZs.m'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.04 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 123904 face 10000 / 123904 face 15000 / 123904 face 20000 / 123904 face 25000 / 123904 face 30000 / 123904 face 35000 / 123904 face 40000 / 123904 face 45000 / 123904 face 50000 / 123904 face 55000 / 123904 face 60000 / 123904 face 65000 / 123904 face 70000 / 123904 face 75000 / 123904 face 80000 / 123904 face 85000 / 123904 face 90000 / 123904 face 95000 / 123904 face 100000 / 123904 face 105000 / 123904 face 110000 / 123904 face 115000 / 123904 face 120000 / 123904 mesh_outer = struct with fields: vertices: [61954x3 double] faces: [123904x3 double] facesOfVertex: [61954x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (58.03 sec). ... creating path file for vertex 1 / 61954 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 61954 ... creating path file for vertex 201 / 61954 ... creating path file for vertex 301 / 61954 ... creating path file for vertex 401 / 61954 ... creating path file for vertex 501 / 61954 ... creating path file for vertex 601 / 61954 ... creating path file for vertex 701 / 61954 ... creating path file for vertex 801 / 61954 ... creating path file for vertex 901 / 61954 ... creating path file for vertex 1001 / 61954 ... creating path file for vertex 1101 / 61954 ... creating path file for vertex 1201 / 61954 ... creating path file for vertex 1301 / 61954 ... creating path file for vertex 1401 / 61954 ... creating path file for vertex 1501 / 61954 ... creating path file for vertex 1601 / 61954 ... creating path file for vertex 1701 / 61954 ... creating path file for vertex 1801 / 61954 ... creating path file for vertex 1901 / 61954 ... creating path file for vertex 2001 / 61954 ... creating path file for vertex 2101 / 61954 ... creating path file for vertex 2201 / 61954 ... creating path file for vertex 2301 / 61954 ... creating path file for vertex 2401 / 61954 ... creating path file for vertex 2501 / 61954 ... creating path file for vertex 2601 / 61954 ... creating path file for vertex 2701 / 61954 ... creating path file for vertex 2801 / 61954 ... creating path file for vertex 2901 / 61954 ... creating path file for vertex 3001 / 61954 ... creating path file for vertex 3101 / 61954 ... creating path file for vertex 3201 / 61954 ... creating path file for vertex 3301 / 61954 ... creating path file for vertex 3401 / 61954 ... creating path file for vertex 3501 / 61954 ... creating path file for vertex 3601 / 61954 ... creating path file for vertex 3701 / 61954 ... creating path file for vertex 3801 / 61954 ... creating path file for vertex 3901 / 61954 ... creating path file for vertex 4001 / 61954 ... creating path file for vertex 4101 / 61954 ... creating path file for vertex 4201 / 61954 ... creating path file for vertex 4301 / 61954 ... creating path file for vertex 4401 / 61954 ... creating path file for vertex 4501 / 61954 ... creating path file for vertex 4601 / 61954 ... creating path file for vertex 4701 / 61954 ... creating path file for vertex 4801 / 61954 ... creating path file for vertex 4901 / 61954 ... creating path file for vertex 5001 / 61954 area file for outer ROIs saved at 5001 ... creating path file for vertex 5101 / 61954 ... creating path file for vertex 5201 / 61954 ... creating path file for vertex 5301 / 61954 ... creating path file for vertex 5401 / 61954 ... creating path file for vertex 5501 / 61954 ... creating path file for vertex 5601 / 61954 ... creating path file for vertex 5701 / 61954 ... creating path file for vertex 5801 / 61954 ... creating path file for vertex 5901 / 61954 ... creating path file for vertex 6001 / 61954 ... creating path file for vertex 6101 / 61954 ... creating path file for vertex 6201 / 61954 ... creating path file for vertex 6301 / 61954 ... creating path file for vertex 6401 / 61954 ... creating path file for vertex 6501 / 61954 ... creating path file for vertex 6601 / 61954 ... creating path file for vertex 6701 / 61954 ... creating path file for vertex 6801 / 61954 ... creating path file for vertex 6901 / 61954 ... creating path file for vertex 7001 / 61954 ... creating path file for vertex 7101 / 61954 ... creating path file for vertex 7201 / 61954 ... creating path file for vertex 7301 / 61954 ... creating path file for vertex 7401 / 61954 ... creating path file for vertex 7501 / 61954 ... creating path file for vertex 7601 / 61954 ... creating path file for vertex 7701 / 61954 ... creating path file for vertex 7801 / 61954 ... creating path file for vertex 7901 / 61954 ... creating path file for vertex 8001 / 61954 ... creating path file for vertex 8101 / 61954 ... creating path file for vertex 8201 / 61954 ... creating path file for vertex 8301 / 61954 ... creating path file for vertex 8401 / 61954 ... creating path file for vertex 8501 / 61954 ... creating path file for vertex 8601 / 61954 ... creating path file for vertex 8701 / 61954 ... creating path file for vertex 8801 / 61954 ... creating path file for vertex 8901 / 61954 ... creating path file for vertex 9001 / 61954 ... creating path file for vertex 9101 / 61954 ... creating path file for vertex 9201 / 61954 ... creating path file for vertex 9301 / 61954 ... creating path file for vertex 9401 / 61954 ... creating path file for vertex 9501 / 61954 ... creating path file for vertex 9601 / 61954 ... creating path file for vertex 9701 / 61954 ... creating path file for vertex 9801 / 61954 ... creating path file for vertex 9901 / 61954 ... creating path file for vertex 10001 / 61954 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 61954 ... creating path file for vertex 10201 / 61954 ... creating path file for vertex 10301 / 61954 ... creating path file for vertex 10401 / 61954 ... creating path file for vertex 10501 / 61954 ... creating path file for vertex 10601 / 61954 ... creating path file for vertex 10701 / 61954 ... creating path file for vertex 10801 / 61954 ... creating path file for vertex 10901 / 61954 ... creating path file for vertex 11001 / 61954 ... creating path file for vertex 11101 / 61954 ... creating path file for vertex 11201 / 61954 ... creating path file for vertex 11301 / 61954 ... creating path file for vertex 11401 / 61954 ... creating path file for vertex 11501 / 61954 ... creating path file for vertex 11601 / 61954 ... creating path file for vertex 11701 / 61954 ... creating path file for vertex 11801 / 61954 ... creating path file for vertex 11901 / 61954 ... creating path file for vertex 12001 / 61954 ... creating path file for vertex 12101 / 61954 ... creating path file for vertex 12201 / 61954 ... creating path file for vertex 12301 / 61954 ... creating path file for vertex 12401 / 61954 ... creating path file for vertex 12501 / 61954 ... creating path file for vertex 12601 / 61954 ... creating path file for vertex 12701 / 61954 ... creating path file for vertex 12801 / 61954 ... creating path file for vertex 12901 / 61954 ... creating path file for vertex 13001 / 61954 ... creating path file for vertex 13101 / 61954 ... creating path file for vertex 13201 / 61954 ... creating path file for vertex 13301 / 61954 ... creating path file for vertex 13401 / 61954 ... creating path file for vertex 13501 / 61954 ... creating path file for vertex 13601 / 61954 ... creating path file for vertex 13701 / 61954 ... creating path file for vertex 13801 / 61954 ... creating path file for vertex 13901 / 61954 ... creating path file for vertex 14001 / 61954 ... creating path file for vertex 14101 / 61954 ... creating path file for vertex 14201 / 61954 ... creating path file for vertex 14301 / 61954 ... creating path file for vertex 14401 / 61954 ... creating path file for vertex 14501 / 61954 ... creating path file for vertex 14601 / 61954 ... creating path file for vertex 14701 / 61954 ... creating path file for vertex 14801 / 61954 ... creating path file for vertex 14901 / 61954 ... creating path file for vertex 15001 / 61954 area file for outer ROIs saved at 15001 ... creating path file for vertex 15101 / 61954 ... creating path file for vertex 15201 / 61954 ... creating path file for vertex 15301 / 61954 ... creating path file for vertex 15401 / 61954 ... creating path file for vertex 15501 / 61954 ... creating path file for vertex 15601 / 61954 ... creating path file for vertex 15701 / 61954 ... creating path file for vertex 15801 / 61954 ... creating path file for vertex 15901 / 61954 ... creating path file for vertex 16001 / 61954 ... creating path file for vertex 16101 / 61954 ... creating path file for vertex 16201 / 61954 ... creating path file for vertex 16301 / 61954 ... creating path file for vertex 16401 / 61954 ... creating path file for vertex 16501 / 61954 ... creating path file for vertex 16601 / 61954 ... creating path file for vertex 16701 / 61954 ... creating path file for vertex 16801 / 61954 ... creating path file for vertex 16901 / 61954 ... creating path file for vertex 17001 / 61954 ... creating path file for vertex 17101 / 61954 ... creating path file for vertex 17201 / 61954 ... creating path file for vertex 17301 / 61954 ... creating path file for vertex 17401 / 61954 ... creating path file for vertex 17501 / 61954 ... creating path file for vertex 17601 / 61954 ... creating path file for vertex 17701 / 61954 ... creating path file for vertex 17801 / 61954 ... creating path file for vertex 17901 / 61954 ... creating path file for vertex 18001 / 61954 ... creating path file for vertex 18101 / 61954 ... creating path file for vertex 18201 / 61954 ... creating path file for vertex 18301 / 61954 ... creating path file for vertex 18401 / 61954 ... creating path file for vertex 18501 / 61954 ... creating path file for vertex 18601 / 61954 ... creating path file for vertex 18701 / 61954 ... creating path file for vertex 18801 / 61954 ... creating path file for vertex 18901 / 61954 ... creating path file for vertex 19001 / 61954 ... creating path file for vertex 19101 / 61954 ... creating path file for vertex 19201 / 61954 ... creating path file for vertex 19301 / 61954 ... creating path file for vertex 19401 / 61954 ... creating path file for vertex 19501 / 61954 ... creating path file for vertex 19601 / 61954 ... creating path file for vertex 19701 / 61954 ... creating path file for vertex 19801 / 61954 ... creating path file for vertex 19901 / 61954 ... creating path file for vertex 20001 / 61954 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 61954 ... creating path file for vertex 20201 / 61954 ... creating path file for vertex 20301 / 61954 ... creating path file for vertex 20401 / 61954 ... creating path file for vertex 20501 / 61954 ... creating path file for vertex 20601 / 61954 ... creating path file for vertex 20701 / 61954 ... creating path file for vertex 20801 / 61954 ... creating path file for vertex 20901 / 61954 ... creating path file for vertex 21001 / 61954 ... creating path file for vertex 21101 / 61954 ... creating path file for vertex 21201 / 61954 ... creating path file for vertex 21301 / 61954 ... creating path file for vertex 21401 / 61954 ... creating path file for vertex 21501 / 61954 ... creating path file for vertex 21601 / 61954 ... creating path file for vertex 21701 / 61954 ... creating path file for vertex 21801 / 61954 ... creating path file for vertex 21901 / 61954 ... creating path file for vertex 22001 / 61954 ... creating path file for vertex 22101 / 61954 ... creating path file for vertex 22201 / 61954 ... creating path file for vertex 22301 / 61954 ... creating path file for vertex 22401 / 61954 ... creating path file for vertex 22501 / 61954 ... creating path file for vertex 22601 / 61954 ... creating path file for vertex 22701 / 61954 ... creating path file for vertex 22801 / 61954 ... creating path file for vertex 22901 / 61954 ... creating path file for vertex 23001 / 61954 ... creating path file for vertex 23101 / 61954 ... creating path file for vertex 23201 / 61954 ... creating path file for vertex 23301 / 61954 ... creating path file for vertex 23401 / 61954 ... creating path file for vertex 23501 / 61954 ... creating path file for vertex 23601 / 61954 ... creating path file for vertex 23701 / 61954 ... creating path file for vertex 23801 / 61954 ... creating path file for vertex 23901 / 61954 ... creating path file for vertex 24001 / 61954 ... creating path file for vertex 24101 / 61954 ... creating path file for vertex 24201 / 61954 ... creating path file for vertex 24301 / 61954 ... creating path file for vertex 24401 / 61954 ... creating path file for vertex 24501 / 61954 ... creating path file for vertex 24601 / 61954 ... creating path file for vertex 24701 / 61954 ... creating path file for vertex 24801 / 61954 ... creating path file for vertex 24901 / 61954 ... creating path file for vertex 25001 / 61954 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 61954 ... creating path file for vertex 25201 / 61954 ... creating path file for vertex 25301 / 61954 ... creating path file for vertex 25401 / 61954 ... creating path file for vertex 25501 / 61954 ... creating path file for vertex 25601 / 61954 ... creating path file for vertex 25701 / 61954 ... creating path file for vertex 25801 / 61954 ... creating path file for vertex 25901 / 61954 ... creating path file for vertex 26001 / 61954 ... creating path file for vertex 26101 / 61954 ... creating path file for vertex 26201 / 61954 ... creating path file for vertex 26301 / 61954 ... creating path file for vertex 26401 / 61954 ... creating path file for vertex 26501 / 61954 ... creating path file for vertex 26601 / 61954 ... creating path file for vertex 26701 / 61954 ... creating path file for vertex 26801 / 61954 ... creating path file for vertex 26901 / 61954 ... creating path file for vertex 27001 / 61954 ... creating path file for vertex 27101 / 61954 ... creating path file for vertex 27201 / 61954 ... creating path file for vertex 27301 / 61954 ... creating path file for vertex 27401 / 61954 ... creating path file for vertex 27501 / 61954 ... creating path file for vertex 27601 / 61954 ... creating path file for vertex 27701 / 61954 ... creating path file for vertex 27801 / 61954 ... creating path file for vertex 27901 / 61954 ... creating path file for vertex 28001 / 61954 ... creating path file for vertex 28101 / 61954 ... creating path file for vertex 28201 / 61954 ... creating path file for vertex 28301 / 61954 ... creating path file for vertex 28401 / 61954 ... creating path file for vertex 28501 / 61954 ... creating path file for vertex 28601 / 61954 ... creating path file for vertex 28701 / 61954 ... creating path file for vertex 28801 / 61954 ... creating path file for vertex 28901 / 61954 ... creating path file for vertex 29001 / 61954 ... creating path file for vertex 29101 / 61954 ... creating path file for vertex 29201 / 61954 ... creating path file for vertex 29301 / 61954 ... creating path file for vertex 29401 / 61954 ... creating path file for vertex 29501 / 61954 ... creating path file for vertex 29601 / 61954 ... creating path file for vertex 29701 / 61954 ... creating path file for vertex 29801 / 61954 ... creating path file for vertex 29901 / 61954 ... creating path file for vertex 30001 / 61954 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 61954 ... creating path file for vertex 30201 / 61954 ... creating path file for vertex 30301 / 61954 ... creating path file for vertex 30401 / 61954 ... creating path file for vertex 30501 / 61954 ... creating path file for vertex 30601 / 61954 ... creating path file for vertex 30701 / 61954 ... creating path file for vertex 30801 / 61954 ... creating path file for vertex 30901 / 61954 ... creating path file for vertex 31001 / 61954 ... creating path file for vertex 31101 / 61954 ... creating path file for vertex 31201 / 61954 ... creating path file for vertex 31301 / 61954 ... creating path file for vertex 31401 / 61954 ... creating path file for vertex 31501 / 61954 ... creating path file for vertex 31601 / 61954 ... creating path file for vertex 31701 / 61954 ... creating path file for vertex 31801 / 61954 ... creating path file for vertex 31901 / 61954 ... creating path file for vertex 32001 / 61954 ... creating path file for vertex 32101 / 61954 ... creating path file for vertex 32201 / 61954 ... creating path file for vertex 32301 / 61954 ... creating path file for vertex 32401 / 61954 ... creating path file for vertex 32501 / 61954 ... creating path file for vertex 32601 / 61954 ... creating path file for vertex 32701 / 61954 ... creating path file for vertex 32801 / 61954 ... creating path file for vertex 32901 / 61954 ... creating path file for vertex 33001 / 61954 ... creating path file for vertex 33101 / 61954 ... creating path file for vertex 33201 / 61954 ... creating path file for vertex 33301 / 61954 ... creating path file for vertex 33401 / 61954 ... creating path file for vertex 33501 / 61954 ... creating path file for vertex 33601 / 61954 ... creating path file for vertex 33701 / 61954 ... creating path file for vertex 33801 / 61954 ... creating path file for vertex 33901 / 61954 ... creating path file for vertex 34001 / 61954 ... creating path file for vertex 34101 / 61954 ... creating path file for vertex 34201 / 61954 ... creating path file for vertex 34301 / 61954 ... creating path file for vertex 34401 / 61954 ... creating path file for vertex 34501 / 61954 ... creating path file for vertex 34601 / 61954 ... creating path file for vertex 34701 / 61954 ... creating path file for vertex 34801 / 61954 Launching updater executable ... creating path file for vertex 34901 / 61954 ... creating path file for vertex 35001 / 61954 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 61954 ... creating path file for vertex 35201 / 61954 ... creating path file for vertex 35301 / 61954 ... creating path file for vertex 35401 / 61954 ... creating path file for vertex 35501 / 61954 ... creating path file for vertex 35601 / 61954 ... creating path file for vertex 35701 / 61954 ... creating path file for vertex 35801 / 61954 ... creating path file for vertex 35901 / 61954 ... creating path file for vertex 36001 / 61954 ... creating path file for vertex 36101 / 61954 ... creating path file for vertex 36201 / 61954 ... creating path file for vertex 36301 / 61954 ... creating path file for vertex 36401 / 61954 ... creating path file for vertex 36501 / 61954 ... creating path file for vertex 36601 / 61954 ... creating path file for vertex 36701 / 61954 ... creating path file for vertex 36801 / 61954 ... creating path file for vertex 36901 / 61954 ... creating path file for vertex 37001 / 61954 ... creating path file for vertex 37101 / 61954 ... creating path file for vertex 37201 / 61954 ... creating path file for vertex 37301 / 61954 ... creating path file for vertex 37401 / 61954 ... creating path file for vertex 37501 / 61954 ... creating path file for vertex 37601 / 61954 ... creating path file for vertex 37701 / 61954 ... creating path file for vertex 37801 / 61954 ... creating path file for vertex 37901 / 61954 ... creating path file for vertex 38001 / 61954 ... creating path file for vertex 38101 / 61954 ... creating path file for vertex 38201 / 61954 ... creating path file for vertex 38301 / 61954 ... creating path file for vertex 38401 / 61954 ... creating path file for vertex 38501 / 61954 ... creating path file for vertex 38601 / 61954 ... creating path file for vertex 38701 / 61954 ... creating path file for vertex 38801 / 61954 ... creating path file for vertex 38901 / 61954 ... creating path file for vertex 39001 / 61954 ... creating path file for vertex 39101 / 61954 ... creating path file for vertex 39201 / 61954 ... creating path file for vertex 39301 / 61954 ... creating path file for vertex 39401 / 61954 ... creating path file for vertex 39501 / 61954 ... creating path file for vertex 39601 / 61954 ... creating path file for vertex 39701 / 61954 ... creating path file for vertex 39801 / 61954 ... creating path file for vertex 39901 / 61954 ... creating path file for vertex 40001 / 61954 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 61954 ... creating path file for vertex 40201 / 61954 ... creating path file for vertex 40301 / 61954 ... creating path file for vertex 40401 / 61954 ... creating path file for vertex 40501 / 61954 ... creating path file for vertex 40601 / 61954 ... creating path file for vertex 40701 / 61954 ... creating path file for vertex 40801 / 61954 ... creating path file for vertex 40901 / 61954 ... creating path file for vertex 41001 / 61954 ... creating path file for vertex 41101 / 61954 ... creating path file for vertex 41201 / 61954 ... creating path file for vertex 41301 / 61954 ... creating path file for vertex 41401 / 61954 ... creating path file for vertex 41501 / 61954 ... creating path file for vertex 41601 / 61954 ... creating path file for vertex 41701 / 61954 ... creating path file for vertex 41801 / 61954 ... creating path file for vertex 41901 / 61954 ... creating path file for vertex 42001 / 61954 ... creating path file for vertex 42101 / 61954 ... creating path file for vertex 42201 / 61954 ... creating path file for vertex 42301 / 61954 ... creating path file for vertex 42401 / 61954 ... creating path file for vertex 42501 / 61954 ... creating path file for vertex 42601 / 61954 ... creating path file for vertex 42701 / 61954 ... creating path file for vertex 42801 / 61954 ... creating path file for vertex 42901 / 61954 ... creating path file for vertex 43001 / 61954 ... creating path file for vertex 43101 / 61954 ... creating path file for vertex 43201 / 61954 ... creating path file for vertex 43301 / 61954 ... creating path file for vertex 43401 / 61954 ... creating path file for vertex 43501 / 61954 ... creating path file for vertex 43601 / 61954 ... creating path file for vertex 43701 / 61954 ... creating path file for vertex 43801 / 61954 ... creating path file for vertex 43901 / 61954 ... creating path file for vertex 44001 / 61954 ... creating path file for vertex 44101 / 61954 ... creating path file for vertex 44201 / 61954 ... creating path file for vertex 44301 / 61954 ... creating path file for vertex 44401 / 61954 ... creating path file for vertex 44501 / 61954 ... creating path file for vertex 44601 / 61954 ... creating path file for vertex 44701 / 61954 ... creating path file for vertex 44801 / 61954 ... creating path file for vertex 44901 / 61954 ... creating path file for vertex 45001 / 61954 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 61954 ... creating path file for vertex 45201 / 61954 ... creating path file for vertex 45301 / 61954 ... creating path file for vertex 45401 / 61954 ... creating path file for vertex 45501 / 61954 ... creating path file for vertex 45601 / 61954 ... creating path file for vertex 45701 / 61954 ... creating path file for vertex 45801 / 61954 ... creating path file for vertex 45901 / 61954 ... creating path file for vertex 46001 / 61954 ... creating path file for vertex 46101 / 61954 ... creating path file for vertex 46201 / 61954 ... creating path file for vertex 46301 / 61954 ... creating path file for vertex 46401 / 61954 ... creating path file for vertex 46501 / 61954 ... creating path file for vertex 46601 / 61954 ... creating path file for vertex 46701 / 61954 ... creating path file for vertex 46801 / 61954 ... creating path file for vertex 46901 / 61954 ... creating path file for vertex 47001 / 61954 ... creating path file for vertex 47101 / 61954 ... creating path file for vertex 47201 / 61954 ... creating path file for vertex 47301 / 61954 ... creating path file for vertex 47401 / 61954 ... creating path file for vertex 47501 / 61954 ... creating path file for vertex 47601 / 61954 ... creating path file for vertex 47701 / 61954 ... creating path file for vertex 47801 / 61954 ... creating path file for vertex 47901 / 61954 ... creating path file for vertex 48001 / 61954 ... creating path file for vertex 48101 / 61954 ... creating path file for vertex 48201 / 61954 ... creating path file for vertex 48301 / 61954 ... creating path file for vertex 48401 / 61954 ... creating path file for vertex 48501 / 61954 ... creating path file for vertex 48601 / 61954 ... creating path file for vertex 48701 / 61954 ... creating path file for vertex 48801 / 61954 ... creating path file for vertex 48901 / 61954 ... creating path file for vertex 49001 / 61954 ... creating path file for vertex 49101 / 61954 ... creating path file for vertex 49201 / 61954 ... creating path file for vertex 49301 / 61954 ... creating path file for vertex 49401 / 61954 ... creating path file for vertex 49501 / 61954 ... creating path file for vertex 49601 / 61954 ... creating path file for vertex 49701 / 61954 ... creating path file for vertex 49801 / 61954 ... creating path file for vertex 49901 / 61954 ... creating path file for vertex 50001 / 61954 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 61954 ... creating path file for vertex 50201 / 61954 ... creating path file for vertex 50301 / 61954 ... creating path file for vertex 50401 / 61954 ... creating path file for vertex 50501 / 61954 ... creating path file for vertex 50601 / 61954 ... creating path file for vertex 50701 / 61954 ... creating path file for vertex 50801 / 61954 ... creating path file for vertex 50901 / 61954 ... creating path file for vertex 51001 / 61954 ... creating path file for vertex 51101 / 61954 non geodesic regions removed from the patch ... creating path file for vertex 51201 / 61954 ... creating path file for vertex 51301 / 61954 ... creating path file for vertex 51401 / 61954 ... creating path file for vertex 51501 / 61954 ... creating path file for vertex 51601 / 61954 ... creating path file for vertex 51701 / 61954 ... creating path file for vertex 51801 / 61954 ... creating path file for vertex 51901 / 61954 ... creating path file for vertex 52001 / 61954 ... creating path file for vertex 52101 / 61954 ... creating path file for vertex 52201 / 61954 ... creating path file for vertex 52301 / 61954 ... creating path file for vertex 52401 / 61954 ... creating path file for vertex 52501 / 61954 ... creating path file for vertex 52601 / 61954 ... creating path file for vertex 52701 / 61954 ... creating path file for vertex 52801 / 61954 ... creating path file for vertex 52901 / 61954 ... creating path file for vertex 53001 / 61954 ... creating path file for vertex 53101 / 61954 ... creating path file for vertex 53201 / 61954 ... creating path file for vertex 53301 / 61954 ... creating path file for vertex 53401 / 61954 ... creating path file for vertex 53501 / 61954 ... creating path file for vertex 53601 / 61954 ... creating path file for vertex 53701 / 61954 ... creating path file for vertex 53801 / 61954 ... creating path file for vertex 53901 / 61954 ... creating path file for vertex 54001 / 61954 ... creating path file for vertex 54101 / 61954 ... creating path file for vertex 54201 / 61954 ... creating path file for vertex 54301 / 61954 ... creating path file for vertex 54401 / 61954 ... creating path file for vertex 54501 / 61954 ... creating path file for vertex 54601 / 61954 ... creating path file for vertex 54701 / 61954 ... creating path file for vertex 54801 / 61954 ... creating path file for vertex 54901 / 61954 ... creating path file for vertex 55001 / 61954 area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 61954 non geodesic regions removed from the patch ... creating path file for vertex 55201 / 61954 ... creating path file for vertex 55301 / 61954 ... creating path file for vertex 55401 / 61954 ... creating path file for vertex 55501 / 61954 ... creating path file for vertex 55601 / 61954 ... creating path file for vertex 55701 / 61954 ... creating path file for vertex 55801 / 61954 ... creating path file for vertex 55901 / 61954 ... creating path file for vertex 56001 / 61954 ... creating path file for vertex 56101 / 61954 ... creating path file for vertex 56201 / 61954 ... creating path file for vertex 56301 / 61954 ... creating path file for vertex 56401 / 61954 ... creating path file for vertex 56501 / 61954 ... creating path file for vertex 56601 / 61954 ... creating path file for vertex 56701 / 61954 ... creating path file for vertex 56801 / 61954 ... creating path file for vertex 56901 / 61954 ... creating path file for vertex 57001 / 61954 ... creating path file for vertex 57101 / 61954 ... creating path file for vertex 57201 / 61954 ... creating path file for vertex 57301 / 61954 ... creating path file for vertex 57401 / 61954 ... creating path file for vertex 57501 / 61954 ... creating path file for vertex 57601 / 61954 ... creating path file for vertex 57701 / 61954 ... creating path file for vertex 57801 / 61954 ... creating path file for vertex 57901 / 61954 ... creating path file for vertex 58001 / 61954 ... creating path file for vertex 58101 / 61954 ... creating path file for vertex 58201 / 61954 ... creating path file for vertex 58301 / 61954 ... creating path file for vertex 58401 / 61954 ... creating path file for vertex 58501 / 61954 ... creating path file for vertex 58601 / 61954 ... creating path file for vertex 58701 / 61954 ... creating path file for vertex 58801 / 61954 ... creating path file for vertex 58901 / 61954 ... creating path file for vertex 59001 / 61954 ... creating path file for vertex 59101 / 61954 ... creating path file for vertex 59201 / 61954 ... creating path file for vertex 59301 / 61954 ... creating path file for vertex 59401 / 61954 ... creating path file for vertex 59501 / 61954 ... creating path file for vertex 59601 / 61954 ... creating path file for vertex 59701 / 61954 ... creating path file for vertex 59801 / 61954 ... creating path file for vertex 59901 / 61954 ... creating path file for vertex 60001 / 61954 area file for outer ROIs saved at 60001 ... creating path file for vertex 60101 / 61954 ... creating path file for vertex 60201 / 61954 ... creating path file for vertex 60301 / 61954 ... creating path file for vertex 60401 / 61954 ... creating path file for vertex 60501 / 61954 ... creating path file for vertex 60601 / 61954 ... creating path file for vertex 60701 / 61954 ... creating path file for vertex 60801 / 61954 ... creating path file for vertex 60901 / 61954 ... creating path file for vertex 61001 / 61954 ... creating path file for vertex 61101 / 61954 ... creating path file for vertex 61201 / 61954 ... creating path file for vertex 61301 / 61954 ... creating path file for vertex 61401 / 61954 ... creating path file for vertex 61501 / 61954 ... creating path file for vertex 61601 / 61954 ... creating path file for vertex 61701 / 61954 ... creating path file for vertex 61801 / 61954 ... creating path file for vertex 61901 / 61954 saving area file in matlab format... DONE. deltaT = 5.2063e+03 ================= mri_path2label --confillxfn lh.pial /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input ================= Reading lh.pial Connecting and filling vertices in path at fillseed 387 Finding path.......................................................................................................................................................................................................... done Filling 387 nlabel 4861 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000001.label Connecting and filling vertices in path at fillseed 124451 Finding path........................................................................................................................................................................................... done Filling 124451 nlabel 6528 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000101.label Connecting and filling vertices in path at fillseed 22 Finding path................................................................................................................................................................................................ done Filling 22 nlabel 7245 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000201.label Connecting and filling vertices in path at fillseed 647 Finding path............................................................................................................................................................................................................................................... done Filling 647 nlabel 5135 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000301.label Connecting and filling vertices in path at fillseed 124698 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 124698 nlabel 7979 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000401.label Connecting and filling vertices in path at fillseed 491 Finding path............................................................................................................................................ done Filling 491 nlabel 6153 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000501.label Connecting and filling vertices in path at fillseed 414 Finding path............................................................................................................................................................................................................. done Filling 414 nlabel 7589 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000601.label Connecting and filling vertices in path at fillseed 132734 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 132734 nlabel 8143 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000701.label Connecting and filling vertices in path at fillseed 113017 Finding path.................................................................................................................................................. done Filling 113017 nlabel 5818 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000801.label Connecting and filling vertices in path at fillseed 394 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 394 nlabel 8047 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000901.label Connecting and filling vertices in path at fillseed 882 Finding path.............................................................................................................................................................................................. done Filling 882 nlabel 4926 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001001.label Connecting and filling vertices in path at fillseed 125818 Finding path........................................................................................................................................................ done Filling 125818 nlabel 5211 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001101.label Connecting and filling vertices in path at fillseed 1056 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1056 nlabel 7735 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001201.label Connecting and filling vertices in path at fillseed 112240 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 112240 nlabel 7997 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001301.label Connecting and filling vertices in path at fillseed 1275 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 1275 nlabel 7653 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001401.label Connecting and filling vertices in path at fillseed 1823 Finding path.............................................................................................................. done Filling 1823 nlabel 5140 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001501.label Connecting and filling vertices in path at fillseed 1585 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1585 nlabel 8172 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001601.label Connecting and filling vertices in path at fillseed 1424 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 1424 nlabel 8160 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001701.label Connecting and filling vertices in path at fillseed 1257 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 1257 nlabel 7725 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001801.label Connecting and filling vertices in path at fillseed 1820 Finding path.......................................................................................................................... done Filling 1820 nlabel 5318 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001901.label Connecting and filling vertices in path at fillseed 1719 Finding path................................................................................................................................................................................................................................................................................... done Filling 1719 nlabel 7534 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002001.label Connecting and filling vertices in path at fillseed 1771 Finding path.............................................................................................................................................................................. done Filling 1771 nlabel 5437 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002101.label Connecting and filling vertices in path at fillseed 1863 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1863 nlabel 8770 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002201.label Connecting and filling vertices in path at fillseed 1653 Finding path.............................................................................................................................................................................................................................................................................................................................................................................. done Filling 1653 nlabel 7731 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002301.label Connecting and filling vertices in path at fillseed 2315 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 2315 nlabel 7341 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002401.label Connecting and filling vertices in path at fillseed 2176 Finding path............................................................................................................. done Filling 2176 nlabel 5214 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002501.label Connecting and filling vertices in path at fillseed 2243 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 2243 nlabel 9346 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002601.label Connecting and filling vertices in path at fillseed 2908 Finding path............................................................................................................................................................................................................ done Filling 2908 nlabel 7518 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002701.label Connecting and filling vertices in path at fillseed 2513 Finding path............................................................................................................................................................................................... done Filling 2513 nlabel 5938 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002801.label Connecting and filling vertices in path at fillseed 2583 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 2583 nlabel 10149 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002901.label Connecting and filling vertices in path at fillseed 123944 Finding path...................................................................................................................................................................................................................... done Filling 123944 nlabel 6942 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003001.label Connecting and filling vertices in path at fillseed 117498 Finding path........................................................................................................................................................................................................................................................... done Filling 117498 nlabel 10989 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003101.label Connecting and filling vertices in path at fillseed 3473 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 3473 nlabel 9962 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003201.label Connecting and filling vertices in path at fillseed 3450 Finding path.................................................................................................................................................................................. done Filling 3450 nlabel 5575 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003301.label Connecting and filling vertices in path at fillseed 2803 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2803 nlabel 9355 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003401.label Connecting and filling vertices in path at fillseed 114155 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 114155 nlabel 8453 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003501.label Connecting and filling vertices in path at fillseed 4499 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4499 nlabel 9724 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003601.label Connecting and filling vertices in path at fillseed 3949 Finding path............................................................................................................................................................................................................................................................................................ done Filling 3949 nlabel 8680 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003701.label Connecting and filling vertices in path at fillseed 4749 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 4749 nlabel 8431 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003801.label Connecting and filling vertices in path at fillseed 3413 Finding path............................................................................................................................................................................ done Filling 3413 nlabel 5930 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003901.label Connecting and filling vertices in path at fillseed 5064 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 5064 nlabel 9608 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004001.label Connecting and filling vertices in path at fillseed 116087 Finding path.................................................................................................................................................................................................................................................................................... done Filling 116087 nlabel 8603 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004101.label Connecting and filling vertices in path at fillseed 4273 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 4273 nlabel 8001 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004201.label Connecting and filling vertices in path at fillseed 3940 Finding path............................................................................................................................................ done Filling 3940 nlabel 6137 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004301.label Connecting and filling vertices in path at fillseed 6507 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 6507 nlabel 10846 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004401.label Connecting and filling vertices in path at fillseed 5431 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 5431 nlabel 9872 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004501.label Connecting and filling vertices in path at fillseed 118419 Finding path.................................................................................................................................................................................................................. done Filling 118419 nlabel 6302 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004601.label Connecting and filling vertices in path at fillseed 7116 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 7116 nlabel 9242 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004701.label Connecting and filling vertices in path at fillseed 6545 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 6545 nlabel 10921 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004801.label Connecting and filling vertices in path at fillseed 5372 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 5372 nlabel 8350 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004901.label Connecting and filling vertices in path at fillseed 7129 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 7129 nlabel 9750 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005001.label Connecting and filling vertices in path at fillseed 6401 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6401 nlabel 8709 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005101.label Connecting and filling vertices in path at fillseed 7270 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 7270 nlabel 11600 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005201.label Connecting and filling vertices in path at fillseed 5958 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 5958 nlabel 7568 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005301.label Connecting and filling vertices in path at fillseed 7918 Finding path.......................................................................................................................................................................................................................................................................................................................................... done Filling 7918 nlabel 8470 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005401.label Connecting and filling vertices in path at fillseed 5707 Finding path.............................................................................................................................................................................................................................................. done Filling 5707 nlabel 6432 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005501.label Connecting and filling vertices in path at fillseed 8082 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 8082 nlabel 11907 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005601.label Connecting and filling vertices in path at fillseed 5526 Finding path................................................................................................................................................................................................................... done Filling 5526 nlabel 5688 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005701.label Connecting and filling vertices in path at fillseed 7033 Finding path.......................................................................................................................................................................... done Filling 7033 nlabel 7678 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005801.label Connecting and filling vertices in path at fillseed 124057 Finding path............................................................................................................................................................................................................................................................................... done Filling 124057 nlabel 7922 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005901.label Connecting and filling vertices in path at fillseed 130139 Finding path................................................................................................................................................................................................................................................................................ done Filling 130139 nlabel 10494 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006001.label Connecting and filling vertices in path at fillseed 126451 Finding path............................................................................................................................................................................................................................................................................................ done Filling 126451 nlabel 8697 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006101.label Connecting and filling vertices in path at fillseed 9409 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 9409 nlabel 9848 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006201.label Connecting and filling vertices in path at fillseed 8638 Finding path.................................................................................................................................................................................................................... done Filling 8638 nlabel 7605 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006301.label Connecting and filling vertices in path at fillseed 7474 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 7474 nlabel 10292 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006401.label Connecting and filling vertices in path at fillseed 127345 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 127345 nlabel 7666 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006501.label Connecting and filling vertices in path at fillseed 10176 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 10176 nlabel 9294 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006601.label Connecting and filling vertices in path at fillseed 8741 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 8741 nlabel 10204 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006701.label Connecting and filling vertices in path at fillseed 130883 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 130883 nlabel 11001 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006801.label Connecting and filling vertices in path at fillseed 7754 Finding path...................................................................................................................................................................................................... done Filling 7754 nlabel 6665 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006901.label Connecting and filling vertices in path at fillseed 7073 Finding path............................................................................................................................................................................................................. done Filling 7073 nlabel 7922 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007001.label Connecting and filling vertices in path at fillseed 9368 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 9368 nlabel 7793 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007101.label Connecting and filling vertices in path at fillseed 9855 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 9855 nlabel 11126 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007201.label Connecting and filling vertices in path at fillseed 7771 Finding path............................................................................................................................................................................................................................................................................................ done Filling 7771 nlabel 8519 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007301.label Connecting and filling vertices in path at fillseed 10999 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 10999 nlabel 9202 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007401.label Connecting and filling vertices in path at fillseed 10085 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 10085 nlabel 9398 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007501.label Connecting and filling vertices in path at fillseed 9893 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 9893 nlabel 11358 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007601.label Connecting and filling vertices in path at fillseed 8499 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 8499 nlabel 7100 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007701.label Connecting and filling vertices in path at fillseed 10145 Finding path.................................................................................................................................................................................................................. done Filling 10145 nlabel 8164 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007801.label Connecting and filling vertices in path at fillseed 13818 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13818 nlabel 11082 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007901.label Connecting and filling vertices in path at fillseed 10688 Finding path..................................................................................................................................................................................................................................... done Filling 10688 nlabel 8154 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008001.label Connecting and filling vertices in path at fillseed 9309 Finding path....................................................................................................................................................................................................... done Filling 9309 nlabel 7584 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008101.label Connecting and filling vertices in path at fillseed 10962 Finding path.................................................................................................................................................................................................. done Filling 10962 nlabel 8223 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008201.label Connecting and filling vertices in path at fillseed 12074 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 12074 nlabel 11023 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008301.label Connecting and filling vertices in path at fillseed 10606 Finding path.................................................................................................................................................................................................................................................................................................. done Filling 10606 nlabel 9100 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008401.label Connecting and filling vertices in path at fillseed 10062 Finding path.......................................................................................................................................................................................................................................... done Filling 10062 nlabel 8506 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008501.label Connecting and filling vertices in path at fillseed 123894 Finding path................................................................................................................................................................................................................................. done Filling 123894 nlabel 7910 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008601.label Connecting and filling vertices in path at fillseed 13028 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 13028 nlabel 9939 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008701.label Connecting and filling vertices in path at fillseed 10709 Finding path.............................................................................................................................................................................................. done Filling 10709 nlabel 7724 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008801.label Connecting and filling vertices in path at fillseed 16230 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16230 nlabel 7711 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008901.label Connecting and filling vertices in path at fillseed 13700 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13700 nlabel 10604 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009001.label Connecting and filling vertices in path at fillseed 15041 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 15041 nlabel 10628 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009101.label Connecting and filling vertices in path at fillseed 12852 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 12852 nlabel 9086 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009201.label Connecting and filling vertices in path at fillseed 12683 Finding path.................................................................................................................................................................................................................................... done Filling 12683 nlabel 7532 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009301.label Connecting and filling vertices in path at fillseed 14562 Finding path............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 14562 nlabel 8411 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009401.label Connecting and filling vertices in path at fillseed 17456 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 17456 nlabel 10328 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009501.label Connecting and filling vertices in path at fillseed 13537 Finding path.......................................................................................................................................................................................................................... done Filling 13537 nlabel 8120 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009601.label Connecting and filling vertices in path at fillseed 17864 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17864 nlabel 9259 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009701.label Connecting and filling vertices in path at fillseed 16465 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16465 nlabel 10056 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009801.label Connecting and filling vertices in path at fillseed 14823 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 14823 nlabel 8081 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009901.label Connecting and filling vertices in path at fillseed 15354 Finding path...................................................................................................................................................................................................................................................................... done Filling 15354 nlabel 9028 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010001.label Connecting and filling vertices in path at fillseed 13625 Finding path..................................................................................................................................................................................................................................................... done Filling 13625 nlabel 7225 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010101.label Connecting and filling vertices in path at fillseed 19181 Finding path........................................................................................................................................................................................................................................................................................................................................................................... done Filling 19181 nlabel 10266 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010201.label Connecting and filling vertices in path at fillseed 15992 Finding path........................................................................................................................................................................................................................................ done Filling 15992 nlabel 7934 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010301.label Connecting and filling vertices in path at fillseed 17827 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 17827 nlabel 6348 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010401.label Connecting and filling vertices in path at fillseed 13616 Finding path............................................................................................................................................................................................................... done Filling 13616 nlabel 7799 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010501.label Connecting and filling vertices in path at fillseed 12496 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 12496 nlabel 11921 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010601.label Connecting and filling vertices in path at fillseed 16846 Finding path.................................................................................................................................................................................................................................................... done Filling 16846 nlabel 7500 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010701.label Connecting and filling vertices in path at fillseed 14451 Finding path..................................................................................................................................................................................................................... done Filling 14451 nlabel 7481 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010801.label Connecting and filling vertices in path at fillseed 18626 Finding path..................................................................................................................................................................................................................................................... done Filling 18626 nlabel 7361 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010901.label Connecting and filling vertices in path at fillseed 17200 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17200 nlabel 9803 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011001.label Connecting and filling vertices in path at fillseed 18244 Finding path.......................................................................................................................................................................................................................................................................................................................................... done Filling 18244 nlabel 10239 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011101.label Connecting and filling vertices in path at fillseed 17069 Finding path............................................................................................................................................................................................................................................................................................. done Filling 17069 nlabel 7538 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011201.label Connecting and filling vertices in path at fillseed 20368 Finding path....................................................................................................................................................................................................................................... done Filling 20368 nlabel 9436 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011301.label Connecting and filling vertices in path at fillseed 17201 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17201 nlabel 9824 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011401.label Connecting and filling vertices in path at fillseed 19155 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 19155 nlabel 10279 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011501.label Connecting and filling vertices in path at fillseed 18493 Finding path................................................................................................................................................................................................................................................................ done Filling 18493 nlabel 8451 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011601.label Connecting and filling vertices in path at fillseed 20404 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 20404 nlabel 8991 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011701.label Connecting and filling vertices in path at fillseed 19662 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 19662 nlabel 10000 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011801.label Connecting and filling vertices in path at fillseed 22059 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 22059 nlabel 10948 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011901.label Connecting and filling vertices in path at fillseed 20201 Finding path.............................................................................................................................................................................................................................................................................. done Filling 20201 nlabel 7485 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012001.label Connecting and filling vertices in path at fillseed 19456 Finding path.............................................................................................................................................................................................................................. done Filling 19456 nlabel 6964 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012101.label Connecting and filling vertices in path at fillseed 23299 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 23299 nlabel 11313 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012201.label Connecting and filling vertices in path at fillseed 18902 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 18902 nlabel 9765 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012301.label Connecting and filling vertices in path at fillseed 18339 Finding path...................................................................................................................................................................................................................................................................... done Filling 18339 nlabel 9265 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012401.label Connecting and filling vertices in path at fillseed 20395 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20395 nlabel 6964 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012501.label Connecting and filling vertices in path at fillseed 24168 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24168 nlabel 11097 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012601.label Connecting and filling vertices in path at fillseed 25490 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 25490 nlabel 9661 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012701.label Connecting and filling vertices in path at fillseed 21981 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21981 nlabel 7785 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012801.label Connecting and filling vertices in path at fillseed 115305 Finding path.................................................................................................................................................................................... done Filling 115305 nlabel 7947 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012901.label Connecting and filling vertices in path at fillseed 25077 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 25077 nlabel 11208 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013001.label Connecting and filling vertices in path at fillseed 26001 Finding path......................................................................................................................................................................................................................................................................... done Filling 26001 nlabel 6402 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013101.label Connecting and filling vertices in path at fillseed 21981 Finding path............................................................................................................................................................................................................................................................... done Filling 21981 nlabel 8221 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013201.label Connecting and filling vertices in path at fillseed 124830 Finding path........................................................................................................................................................................................ done Filling 124830 nlabel 7831 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013301.label Connecting and filling vertices in path at fillseed 22257 Finding path.............................................................................................................................................................................................................................. done Filling 22257 nlabel 6913 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013401.label Connecting and filling vertices in path at fillseed 24038 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24038 nlabel 9273 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013501.label Connecting and filling vertices in path at fillseed 123753 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 123753 nlabel 9363 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013601.label Connecting and filling vertices in path at fillseed 22171 Finding path................................................................................................................................................................................................... done Filling 22171 nlabel 7866 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013701.label Connecting and filling vertices in path at fillseed 25054 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25054 nlabel 10918 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013801.label Connecting and filling vertices in path at fillseed 24987 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 24987 nlabel 10126 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013901.label Connecting and filling vertices in path at fillseed 23824 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23824 nlabel 8056 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014001.label Connecting and filling vertices in path at fillseed 23080 Finding path....................................................................................................................................................................................................................... done Filling 23080 nlabel 7242 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014101.label Connecting and filling vertices in path at fillseed 24094 Finding path........................................................................................................................................................................................................... done Filling 24094 nlabel 7329 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014201.label Connecting and filling vertices in path at fillseed 132449 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 132449 nlabel 12921 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014301.label Connecting and filling vertices in path at fillseed 25413 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 25413 nlabel 8113 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014401.label Connecting and filling vertices in path at fillseed 23079 Finding path....................................................................................................................................................................................... done Filling 23079 nlabel 7628 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014501.label Connecting and filling vertices in path at fillseed 26988 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 26988 nlabel 10651 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014601.label Connecting and filling vertices in path at fillseed 27933 Finding path................................................................................................................................................................................................................................................................. done Filling 27933 nlabel 6601 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014701.label Connecting and filling vertices in path at fillseed 28596 Finding path.............................................................................................................................................................................................................................................................................. done Filling 28596 nlabel 8638 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014801.label Connecting and filling vertices in path at fillseed 123990 Finding path.................................................................................................................................................................................................................................................. done Filling 123990 nlabel 6273 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014901.label Connecting and filling vertices in path at fillseed 29122 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29122 nlabel 10992 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015001.label Connecting and filling vertices in path at fillseed 29030 Finding path.................................................................................................................................................................... done Filling 29030 nlabel 6150 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015101.label Connecting and filling vertices in path at fillseed 28539 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28539 nlabel 9639 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015201.label Connecting and filling vertices in path at fillseed 24792 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 24792 nlabel 7586 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015301.label Connecting and filling vertices in path at fillseed 29045 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29045 nlabel 8936 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015401.label Connecting and filling vertices in path at fillseed 136756 Finding path............................................................................................................................................................................................................................................................................................. done Filling 136756 nlabel 7351 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015501.label Connecting and filling vertices in path at fillseed 27193 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27193 nlabel 9965 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015601.label Connecting and filling vertices in path at fillseed 28556 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 28556 nlabel 8496 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015701.label Connecting and filling vertices in path at fillseed 26737 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 26737 nlabel 7883 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015801.label Connecting and filling vertices in path at fillseed 27879 Finding path......................................................................................................................................................................................................................... done Filling 27879 nlabel 6526 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015901.label Connecting and filling vertices in path at fillseed 31233 Finding path.................................................................................................................................................................................................... done Filling 31233 nlabel 6097 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016001.label Connecting and filling vertices in path at fillseed 29946 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 29946 nlabel 11504 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016101.label Connecting and filling vertices in path at fillseed 25068 Finding path.......................................................................................................................................................................................................................... done Filling 25068 nlabel 7071 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016201.label Connecting and filling vertices in path at fillseed 31254 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 31254 nlabel 10113 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016301.label Connecting and filling vertices in path at fillseed 31230 Finding path...................................................................................................................................................... done Filling 31230 nlabel 6003 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016401.label Connecting and filling vertices in path at fillseed 29856 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 29856 nlabel 11286 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016501.label Connecting and filling vertices in path at fillseed 28062 Finding path................................................................................................................................................................................................. done Filling 28062 nlabel 7486 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016601.label Connecting and filling vertices in path at fillseed 31255 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 31255 nlabel 9885 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016701.label Connecting and filling vertices in path at fillseed 31230 Finding path.......................................................................................................................................... done Filling 31230 nlabel 5993 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016801.label Connecting and filling vertices in path at fillseed 31021 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 31021 nlabel 11628 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016901.label Connecting and filling vertices in path at fillseed 32395 Finding path............................................................................................................................................................................................. done Filling 32395 nlabel 7010 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017001.label Connecting and filling vertices in path at fillseed 33325 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 33325 nlabel 8010 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017101.label Connecting and filling vertices in path at fillseed 31395 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 31395 nlabel 10221 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017201.label Connecting and filling vertices in path at fillseed 122553 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 122553 nlabel 12062 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017301.label Connecting and filling vertices in path at fillseed 32323 Finding path.......................................................................................................................................................................................................................................................... done Filling 32323 nlabel 5272 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017401.label Connecting and filling vertices in path at fillseed 32201 Finding path........................................................................................................................................................................................................................................................ done Filling 32201 nlabel 6960 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017501.label Connecting and filling vertices in path at fillseed 33287 Finding path............................................................................................................................................................................... done Filling 33287 nlabel 6130 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017601.label Connecting and filling vertices in path at fillseed 31860 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 31860 nlabel 11982 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017701.label Connecting and filling vertices in path at fillseed 33393 Finding path.......................................................................................................................................................................................................... done Filling 33393 nlabel 7030 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017801.label Connecting and filling vertices in path at fillseed 34242 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 34242 nlabel 7291 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017901.label Connecting and filling vertices in path at fillseed 33283 Finding path................................................................................................................................................................................................... done Filling 33283 nlabel 5509 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018001.label Connecting and filling vertices in path at fillseed 33930 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 33930 nlabel 11372 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018101.label Connecting and filling vertices in path at fillseed 122614 Finding path.................................................................................................................................................................................................................................................. done Filling 122614 nlabel 6354 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018201.label Connecting and filling vertices in path at fillseed 136825 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 136825 nlabel 9390 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018301.label Connecting and filling vertices in path at fillseed 35202 Finding path...................................................................................................................................................................................................... done Filling 35202 nlabel 7105 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018401.label Connecting and filling vertices in path at fillseed 33761 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 33761 nlabel 9612 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018501.label Connecting and filling vertices in path at fillseed 34424 Finding path............................................................................................................................................................................................. done Filling 34424 nlabel 6985 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018601.label Connecting and filling vertices in path at fillseed 33177 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 33177 nlabel 8376 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018701.label Connecting and filling vertices in path at fillseed 36215 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36215 nlabel 10991 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018801.label Connecting and filling vertices in path at fillseed 33749 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 33749 nlabel 9041 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018901.label Connecting and filling vertices in path at fillseed 36575 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 36575 nlabel 7743 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019001.label Connecting and filling vertices in path at fillseed 35214 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 35214 nlabel 5813 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019101.label Connecting and filling vertices in path at fillseed 36087 Finding path.................................................................................................................................................................................................................. done Filling 36087 nlabel 8718 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019201.label Connecting and filling vertices in path at fillseed 37003 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37003 nlabel 8083 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019301.label Connecting and filling vertices in path at fillseed 36596 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 36596 nlabel 8686 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019401.label Connecting and filling vertices in path at fillseed 34126 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 34126 nlabel 7400 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019501.label Connecting and filling vertices in path at fillseed 39804 Finding path....................................................................................................................................................................................... done Filling 39804 nlabel 6723 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019601.label Connecting and filling vertices in path at fillseed 117842 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 117842 nlabel 10274 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019701.label Connecting and filling vertices in path at fillseed 37749 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37749 nlabel 10645 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019801.label Connecting and filling vertices in path at fillseed 40152 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 40152 nlabel 7102 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019901.label Connecting and filling vertices in path at fillseed 36126 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 36126 nlabel 7092 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020001.label Connecting and filling vertices in path at fillseed 38863 Finding path.............................................................................................................................................................................................................................................................. done Filling 38863 nlabel 6390 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020101.label Connecting and filling vertices in path at fillseed 33818 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 33818 nlabel 9523 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020201.label Connecting and filling vertices in path at fillseed 39929 Finding path............................................................................................................................................................................................................................ done Filling 39929 nlabel 6827 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020301.label Connecting and filling vertices in path at fillseed 44309 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 44309 nlabel 8839 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020401.label Connecting and filling vertices in path at fillseed 38978 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 38978 nlabel 11649 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020501.label Connecting and filling vertices in path at fillseed 39828 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 39828 nlabel 6650 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020601.label Connecting and filling vertices in path at fillseed 40249 Finding path............................................................................................................................................................................ done Filling 40249 nlabel 7105 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020701.label Connecting and filling vertices in path at fillseed 39870 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39870 nlabel 6733 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020801.label Connecting and filling vertices in path at fillseed 38942 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38942 nlabel 11964 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020901.label Connecting and filling vertices in path at fillseed 39843 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 39843 nlabel 7238 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021001.label Connecting and filling vertices in path at fillseed 119202 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 119202 nlabel 8639 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021101.label Connecting and filling vertices in path at fillseed 133124 Finding path........................................................................................................................................................................................................................................................................ done Filling 133124 nlabel 6768 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021201.label Connecting and filling vertices in path at fillseed 40947 Finding path........................................................................................................................................................................................... done Filling 40947 nlabel 6651 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021301.label Connecting and filling vertices in path at fillseed 131031 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 131031 nlabel 7334 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021401.label Connecting and filling vertices in path at fillseed 41743 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 41743 nlabel 11560 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021501.label Connecting and filling vertices in path at fillseed 41866 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 41866 nlabel 9061 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021601.label Connecting and filling vertices in path at fillseed 42109 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 42109 nlabel 8493 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021701.label Connecting and filling vertices in path at fillseed 41348 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41348 nlabel 11143 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021801.label Connecting and filling vertices in path at fillseed 41561 Finding path................................................................................................................................................................................................................................................................................................................................................................... done Filling 41561 nlabel 7633 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021901.label Connecting and filling vertices in path at fillseed 46762 Finding path..................................................................................................................................................................................................................... done Filling 46762 nlabel 6384 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022001.label Connecting and filling vertices in path at fillseed 43287 Finding path...................................................................................................................................................................... done Filling 43287 nlabel 6632 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022101.label Connecting and filling vertices in path at fillseed 42448 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 42448 nlabel 10916 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022201.label Connecting and filling vertices in path at fillseed 46109 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46109 nlabel 8363 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022301.label Connecting and filling vertices in path at fillseed 43470 Finding path......................................................................................................................................................................................................................................................................... done Filling 43470 nlabel 7616 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022401.label Connecting and filling vertices in path at fillseed 43340 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43340 nlabel 8832 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022501.label Connecting and filling vertices in path at fillseed 44644 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44644 nlabel 12522 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022601.label Connecting and filling vertices in path at fillseed 44001 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44001 nlabel 11712 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022701.label Connecting and filling vertices in path at fillseed 45809 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 45809 nlabel 7500 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022801.label Connecting and filling vertices in path at fillseed 45539 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 45539 nlabel 8430 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022901.label Connecting and filling vertices in path at fillseed 46960 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46960 nlabel 11232 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023001.label Connecting and filling vertices in path at fillseed 45441 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 45441 nlabel 9375 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023101.label Connecting and filling vertices in path at fillseed 45591 Finding path............................................................................................................................................................................................................................................................. done Filling 45591 nlabel 6266 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023201.label Connecting and filling vertices in path at fillseed 47919 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 47919 nlabel 10882 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023301.label Connecting and filling vertices in path at fillseed 42485 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42485 nlabel 10837 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023401.label Connecting and filling vertices in path at fillseed 45960 Finding path............................................................................................................................................................................................................................. done Filling 45960 nlabel 6821 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023501.label Connecting and filling vertices in path at fillseed 47893 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 47893 nlabel 7585 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023601.label Connecting and filling vertices in path at fillseed 46730 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 46730 nlabel 8739 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023701.label Connecting and filling vertices in path at fillseed 44794 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44794 nlabel 9837 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023801.label Connecting and filling vertices in path at fillseed 49943 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 49943 nlabel 10938 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023901.label Connecting and filling vertices in path at fillseed 52401 Finding path.................................................................................................................................................................................................................... done Filling 52401 nlabel 7095 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024001.label Connecting and filling vertices in path at fillseed 46717 Finding path................................................................................................................................................................................................................................................................................................ done Filling 46717 nlabel 10021 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024101.label Connecting and filling vertices in path at fillseed 45565 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 45565 nlabel 8452 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024201.label Connecting and filling vertices in path at fillseed 47751 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 47751 nlabel 9356 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024301.label Connecting and filling vertices in path at fillseed 52401 Finding path................................................................................................................................................................................................................................................................... done Filling 52401 nlabel 7389 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024401.label Connecting and filling vertices in path at fillseed 50208 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 50208 nlabel 7066 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024501.label Connecting and filling vertices in path at fillseed 50280 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 50280 nlabel 11805 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024601.label Connecting and filling vertices in path at fillseed 48883 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 48883 nlabel 9870 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024701.label Connecting and filling vertices in path at fillseed 53425 Finding path............................................................................................................................................................................................................................................................... done Filling 53425 nlabel 6688 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024801.label Connecting and filling vertices in path at fillseed 50206 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 50206 nlabel 6514 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024901.label Connecting and filling vertices in path at fillseed 50256 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50256 nlabel 12211 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025001.label Connecting and filling vertices in path at fillseed 128221 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 128221 nlabel 10018 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025101.label Connecting and filling vertices in path at fillseed 51772 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 51772 nlabel 5873 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025201.label Connecting and filling vertices in path at fillseed 52969 Finding path................................................................................................................................................................................................................................................................................ done Filling 52969 nlabel 9137 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025301.label Connecting and filling vertices in path at fillseed 51325 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 51325 nlabel 12325 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025401.label Connecting and filling vertices in path at fillseed 48283 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 48283 nlabel 10413 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025501.label Connecting and filling vertices in path at fillseed 53659 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 53659 nlabel 5266 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025601.label Connecting and filling vertices in path at fillseed 53072 Finding path................................................................................................................................................................................................................................................................... done Filling 53072 nlabel 8434 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025701.label Connecting and filling vertices in path at fillseed 52331 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52331 nlabel 12688 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025801.label Connecting and filling vertices in path at fillseed 53193 Finding path................................................................................................................................................................................................................................................................................... done Filling 53193 nlabel 8617 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025901.label Connecting and filling vertices in path at fillseed 52639 Finding path................................................................................................................................................................................................................... done Filling 52639 nlabel 6487 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026001.label Connecting and filling vertices in path at fillseed 51297 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 51297 nlabel 6504 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026101.label Connecting and filling vertices in path at fillseed 52290 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 52290 nlabel 9527 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026201.label Connecting and filling vertices in path at fillseed 54355 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 54355 nlabel 11011 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026301.label Connecting and filling vertices in path at fillseed 55983 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55983 nlabel 9575 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026401.label Connecting and filling vertices in path at fillseed 54856 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 54856 nlabel 9725 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026501.label Connecting and filling vertices in path at fillseed 52274 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 52274 nlabel 8512 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026601.label Connecting and filling vertices in path at fillseed 54298 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54298 nlabel 12293 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026701.label Connecting and filling vertices in path at fillseed 51800 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 51800 nlabel 12384 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026801.label Connecting and filling vertices in path at fillseed 51585 Finding path.............................................................................................................................................................................................. done Filling 51585 nlabel 6818 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026901.label Connecting and filling vertices in path at fillseed 57721 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 57721 nlabel 8957 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027001.label Connecting and filling vertices in path at fillseed 123527 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 123527 nlabel 9776 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027101.label Connecting and filling vertices in path at fillseed 60024 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 60024 nlabel 8989 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027201.label Connecting and filling vertices in path at fillseed 59554 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 59554 nlabel 12510 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027301.label Connecting and filling vertices in path at fillseed 58350 Finding path.................................................................................................................................................................................................................. done Filling 58350 nlabel 6712 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027401.label Connecting and filling vertices in path at fillseed 58756 Finding path............................................................................................................................................................................................................................................................ done Filling 58756 nlabel 8066 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027501.label Connecting and filling vertices in path at fillseed 113125 Finding path.................................................................................................................................................................................................................................................................................................. done Filling 113125 nlabel 10212 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027601.label Connecting and filling vertices in path at fillseed 55258 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55258 nlabel 10779 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027701.label Connecting and filling vertices in path at fillseed 60608 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 60608 nlabel 11951 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027801.label Connecting and filling vertices in path at fillseed 58694 Finding path........................................................................................................................................................................................... done Filling 58694 nlabel 7676 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027901.label Connecting and filling vertices in path at fillseed 121828 Finding path................................................................................................................................................................................................... done Filling 121828 nlabel 8479 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028001.label Connecting and filling vertices in path at fillseed 132356 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 132356 nlabel 9707 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028101.label Connecting and filling vertices in path at fillseed 62944 Finding path............................................................................................................................................................................................................................................................................................ done Filling 62944 nlabel 7487 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028201.label Connecting and filling vertices in path at fillseed 62488 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 62488 nlabel 9600 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028301.label Connecting and filling vertices in path at fillseed 59643 Finding path.................................................................................................................................................................... done Filling 59643 nlabel 8354 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028401.label Connecting and filling vertices in path at fillseed 113403 Finding path....................................................................................................................................................................................................................................................... done Filling 113403 nlabel 7946 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028501.label Connecting and filling vertices in path at fillseed 55161 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 55161 nlabel 11311 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028601.label Connecting and filling vertices in path at fillseed 57222 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 57222 nlabel 9342 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028701.label Connecting and filling vertices in path at fillseed 121080 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 121080 nlabel 15212 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028801.label Connecting and filling vertices in path at fillseed 59487 Finding path................................................................................................................................................................................................. done Filling 59487 nlabel 6116 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028901.label Connecting and filling vertices in path at fillseed 61004 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 61004 nlabel 8774 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029001.label Connecting and filling vertices in path at fillseed 62934 Finding path....................................................................................................................................................................................................................... done Filling 62934 nlabel 6709 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029101.label Connecting and filling vertices in path at fillseed 59324 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 59324 nlabel 10634 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029201.label Connecting and filling vertices in path at fillseed 61785 Finding path......................................................................................................................................... done Filling 61785 nlabel 7774 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029301.label Connecting and filling vertices in path at fillseed 57145 Finding path................................................................................................................................................................................ done Filling 57145 nlabel 6605 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029401.label Connecting and filling vertices in path at fillseed 113094 Finding path.................................................................................................................................................................................................................. done Filling 113094 nlabel 9311 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029501.label Connecting and filling vertices in path at fillseed 62922 Finding path................................................................................................................................................................ done Filling 62922 nlabel 6173 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029601.label Connecting and filling vertices in path at fillseed 60403 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 60403 nlabel 10093 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029701.label Connecting and filling vertices in path at fillseed 63703 Finding path............................................................................................................................................... done Filling 63703 nlabel 7429 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029801.label Connecting and filling vertices in path at fillseed 62063 Finding path.................................................................................................................................................................................................................................................................... done Filling 62063 nlabel 5356 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 116278 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 116278 nlabel 10417 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 64905 Finding path.............................................................................................................................................................................................................................. done Filling 64905 nlabel 6545 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030101.label Connecting and filling vertices in path at fillseed 61724 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 61724 nlabel 15112 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030201.label Connecting and filling vertices in path at fillseed 62370 Finding path......................................................................................................................................................................................................... done Filling 62370 nlabel 6110 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030301.label Connecting and filling vertices in path at fillseed 62057 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 62057 nlabel 6706 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030401.label Connecting and filling vertices in path at fillseed 67909 Finding path..................................................................................................................................................... done Filling 67909 nlabel 6137 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030501.label Connecting and filling vertices in path at fillseed 63204 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 63204 nlabel 7316 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030601.label Connecting and filling vertices in path at fillseed 61874 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 61874 nlabel 12371 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030701.label Connecting and filling vertices in path at fillseed 129817 Finding path................................................................................................................................................................................................... done Filling 129817 nlabel 5775 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030801.label Connecting and filling vertices in path at fillseed 123885 Finding path.............................................................................................................................................................................................................................. done Filling 123885 nlabel 9068 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030901.label Connecting and filling vertices in path at fillseed 119730 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 119730 nlabel 10525 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031001.label Connecting and filling vertices in path at fillseed 63872 Finding path......................................................................................................................................................................................................................................................................................... done Filling 63872 nlabel 5372 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031101.label Connecting and filling vertices in path at fillseed 126169 Finding path........................................................................................................................................................................................................................ done Filling 126169 nlabel 6188 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031201.label Connecting and filling vertices in path at fillseed 136213 Finding path......................................................................................................................................................................................................................................... done Filling 136213 nlabel 5380 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031301.label Connecting and filling vertices in path at fillseed 65901 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 65901 nlabel 7096 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031401.label Connecting and filling vertices in path at fillseed 132416 Finding path........................................................................................................................................................... done Filling 132416 nlabel 5174 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031501.label Connecting and filling vertices in path at fillseed 64421 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64421 nlabel 13587 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031601.label Connecting and filling vertices in path at fillseed 65634 Finding path.................................................................................................. done Filling 65634 nlabel 7480 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031701.label Connecting and filling vertices in path at fillseed 66841 Finding path......................................................................................................................................................................................................... done Filling 66841 nlabel 8153 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031801.label Connecting and filling vertices in path at fillseed 67971 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 67971 nlabel 10649 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031901.label Connecting and filling vertices in path at fillseed 135183 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 135183 nlabel 9031 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032001.label Connecting and filling vertices in path at fillseed 64659 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64659 nlabel 15337 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032101.label Connecting and filling vertices in path at fillseed 67672 Finding path............................................................................................ done Filling 67672 nlabel 7355 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032201.label Connecting and filling vertices in path at fillseed 65946 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65946 nlabel 8964 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032301.label Connecting and filling vertices in path at fillseed 63046 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63046 nlabel 10434 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032401.label Connecting and filling vertices in path at fillseed 64318 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64318 nlabel 13571 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032501.label Connecting and filling vertices in path at fillseed 122476 Finding path.......................................................................................... done Filling 122476 nlabel 7785 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032601.label Connecting and filling vertices in path at fillseed 68947 Finding path.................................................................................................................................................................................................................................................................. done Filling 68947 nlabel 5567 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032701.label Connecting and filling vertices in path at fillseed 132756 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 132756 nlabel 6987 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032801.label Connecting and filling vertices in path at fillseed 70976 Finding path..................................................................................................................................... done Filling 70976 nlabel 5194 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032901.label Connecting and filling vertices in path at fillseed 64800 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 64800 nlabel 6311 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033001.label Connecting and filling vertices in path at fillseed 132027 Finding path............................................................................................................................................................................................................................................................. done Filling 132027 nlabel 5100 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033101.label Connecting and filling vertices in path at fillseed 135686 Finding path...................................................................................................................................... done Filling 135686 nlabel 7535 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033201.label Connecting and filling vertices in path at fillseed 123900 Finding path............................................................................................................................................................................................................................................................................................................ done Filling 123900 nlabel 9176 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033301.label Connecting and filling vertices in path at fillseed 74010 Finding path............................................................................................................................................ done Filling 74010 nlabel 5030 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033401.label Connecting and filling vertices in path at fillseed 68275 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68275 nlabel 17146 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033501.label Connecting and filling vertices in path at fillseed 117178 Finding path...................................................................................................................................................... done Filling 117178 nlabel 4437 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033601.label Connecting and filling vertices in path at fillseed 71014 Finding path............................................................................................................................................................................ done Filling 71014 nlabel 4995 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033701.label Connecting and filling vertices in path at fillseed 71970 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 71970 nlabel 7416 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033801.label Connecting and filling vertices in path at fillseed 72174 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 72174 nlabel 10746 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033901.label Connecting and filling vertices in path at fillseed 69297 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 69297 nlabel 16458 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034001.label Connecting and filling vertices in path at fillseed 71700 Finding path........................................................................................................................................................ done Filling 71700 nlabel 7864 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034101.label Connecting and filling vertices in path at fillseed 73818 Finding path.................................................................................................................................................................................................................................................... done Filling 73818 nlabel 8198 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034201.label Connecting and filling vertices in path at fillseed 72052 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 72052 nlabel 6790 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034301.label Connecting and filling vertices in path at fillseed 70133 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 70133 nlabel 11541 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034401.label Connecting and filling vertices in path at fillseed 69252 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 69252 nlabel 10520 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034501.label Connecting and filling vertices in path at fillseed 72731 Finding path............................................................................................................................................................................................. done Filling 72731 nlabel 7602 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034601.label Connecting and filling vertices in path at fillseed 72072 Finding path.................................................................................................................................................................................................................................................................................... done Filling 72072 nlabel 6047 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034701.label Connecting and filling vertices in path at fillseed 122135 Finding path..................................................................................................................................................................................................................................................... done Filling 122135 nlabel 7999 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034801.label Connecting and filling vertices in path at fillseed 72932 Finding path................................................................................................................................................................................................................................. done Filling 72932 nlabel 6306 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034901.label Connecting and filling vertices in path at fillseed 69398 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 69398 nlabel 17171 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035001.label Connecting and filling vertices in path at fillseed 73072 Finding path................................................................................................................................................................................................................ done Filling 73072 nlabel 4578 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035101.label Connecting and filling vertices in path at fillseed 73079 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 73079 nlabel 8666 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035201.label Connecting and filling vertices in path at fillseed 74164 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 74164 nlabel 10027 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035301.label Connecting and filling vertices in path at fillseed 73630 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 73630 nlabel 15433 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035401.label Connecting and filling vertices in path at fillseed 74289 Finding path................................................................................................................................................................................................................ done Filling 74289 nlabel 5873 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035501.label Connecting and filling vertices in path at fillseed 116105 Finding path............................................................................................................................................................................................................................................................... done Filling 116105 nlabel 8157 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035601.label Connecting and filling vertices in path at fillseed 120972 Finding path........................................................................................ done Filling 120972 nlabel 4222 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035701.label Connecting and filling vertices in path at fillseed 73901 Finding path......................................................................................................................................................................................................... done Filling 73901 nlabel 5983 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035801.label Connecting and filling vertices in path at fillseed 129117 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129117 nlabel 16962 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035901.label Connecting and filling vertices in path at fillseed 72099 Finding path................................................................................................................................................................................................................ done Filling 72099 nlabel 5718 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036001.label Connecting and filling vertices in path at fillseed 76057 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 76057 nlabel 5996 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036101.label Connecting and filling vertices in path at fillseed 74049 Finding path.................................................................................................................................................................................................................... done Filling 74049 nlabel 4318 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036201.label Connecting and filling vertices in path at fillseed 74764 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 74764 nlabel 14823 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036301.label Connecting and filling vertices in path at fillseed 76520 Finding path.............................................................................................................................................................................................................. done Filling 76520 nlabel 5002 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036401.label Connecting and filling vertices in path at fillseed 116105 Finding path........................................................................................................................................................................................................................................................................................... done Filling 116105 nlabel 8205 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036501.label Connecting and filling vertices in path at fillseed 73109 Finding path........................................................................................................................................................................................ done Filling 73109 nlabel 8136 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036601.label Connecting and filling vertices in path at fillseed 74964 Finding path................................................................................................................................................................................................... done Filling 74964 nlabel 6021 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036701.label Connecting and filling vertices in path at fillseed 72584 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72584 nlabel 17353 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036801.label Connecting and filling vertices in path at fillseed 77736 Finding path........................................................................................................................................................................................................................ done Filling 77736 nlabel 8534 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036901.label Connecting and filling vertices in path at fillseed 77979 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 77979 nlabel 7952 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037001.label Connecting and filling vertices in path at fillseed 136222 Finding path..................................................................................................................................................................................... done Filling 136222 nlabel 8302 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037101.label Connecting and filling vertices in path at fillseed 78249 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 78249 nlabel 12335 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037201.label Connecting and filling vertices in path at fillseed 115602 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 115602 nlabel 19339 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037301.label Connecting and filling vertices in path at fillseed 78164 Finding path.................................................................................................................................................................................................. done Filling 78164 nlabel 5872 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037401.label Connecting and filling vertices in path at fillseed 78059 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 78059 nlabel 5475 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037501.label Connecting and filling vertices in path at fillseed 75137 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75137 nlabel 9696 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037601.label Connecting and filling vertices in path at fillseed 75944 Finding path................................................................................................................................................................................ done Filling 75944 nlabel 5588 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037701.label Connecting and filling vertices in path at fillseed 78384 Finding path............................................................................................................................................................................................... done Filling 78384 nlabel 5705 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037801.label Connecting and filling vertices in path at fillseed 80695 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 80695 nlabel 5947 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037901.label Connecting and filling vertices in path at fillseed 114367 Finding path.................................................................................................................................................................................................... done Filling 114367 nlabel 3649 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038001.label Connecting and filling vertices in path at fillseed 79197 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79197 nlabel 11717 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038101.label Connecting and filling vertices in path at fillseed 75605 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75605 nlabel 17786 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038201.label Connecting and filling vertices in path at fillseed 79677 Finding path..................................................................................................................................................................................................................................................................................... done Filling 79677 nlabel 6283 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038301.label Connecting and filling vertices in path at fillseed 79061 Finding path................................................................................................................................................................................................................................................... done Filling 79061 nlabel 6608 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038401.label Connecting and filling vertices in path at fillseed 76159 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76159 nlabel 9553 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038501.label Connecting and filling vertices in path at fillseed 77024 Finding path........................................................................................................................................................................................ done Filling 77024 nlabel 5548 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038601.label Connecting and filling vertices in path at fillseed 77508 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77508 nlabel 15381 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038701.label Connecting and filling vertices in path at fillseed 83904 Finding path................................................................................................................................................ done Filling 83904 nlabel 5212 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038801.label Connecting and filling vertices in path at fillseed 80973 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 80973 nlabel 7458 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038901.label Connecting and filling vertices in path at fillseed 77110 Finding path........................................................................................................................ done Filling 77110 nlabel 4662 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039001.label Connecting and filling vertices in path at fillseed 79363 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79363 nlabel 14350 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039101.label Connecting and filling vertices in path at fillseed 80561 Finding path..................................................................................................................................................................................................................................................................... done Filling 80561 nlabel 6309 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039201.label Connecting and filling vertices in path at fillseed 81610 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 81610 nlabel 5976 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039301.label Connecting and filling vertices in path at fillseed 80960 Finding path............................................................................................................................................................................................................................................ done Filling 80960 nlabel 3416 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039401.label Connecting and filling vertices in path at fillseed 80152 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80152 nlabel 11901 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039501.label Connecting and filling vertices in path at fillseed 80806 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80806 nlabel 13557 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039601.label Connecting and filling vertices in path at fillseed 132301 Finding path............................................................................................................................................................... done Filling 132301 nlabel 5035 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039701.label Connecting and filling vertices in path at fillseed 80862 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 80862 nlabel 6431 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039801.label Connecting and filling vertices in path at fillseed 82794 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 82794 nlabel 4691 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039901.label Connecting and filling vertices in path at fillseed 82033 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82033 nlabel 11390 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040001.label Connecting and filling vertices in path at fillseed 81446 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81446 nlabel 13985 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040101.label Connecting and filling vertices in path at fillseed 114969 Finding path.......................................................................................................................................................... done Filling 114969 nlabel 5835 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040201.label Connecting and filling vertices in path at fillseed 81806 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81806 nlabel 6647 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040301.label Connecting and filling vertices in path at fillseed 83827 Finding path......................................................................................................................................................................................................................................................... done Filling 83827 nlabel 9081 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040401.label Connecting and filling vertices in path at fillseed 82070 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 82070 nlabel 10365 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040501.label Connecting and filling vertices in path at fillseed 79452 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79452 nlabel 16512 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040601.label Connecting and filling vertices in path at fillseed 83081 Finding path.............................................................................................................................................. done Filling 83081 nlabel 5744 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040701.label Connecting and filling vertices in path at fillseed 83742 Finding path................................................................................................................................................................................................................................................................ done Filling 83742 nlabel 5765 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040801.label Connecting and filling vertices in path at fillseed 87967 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 87967 nlabel 4130 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040901.label Connecting and filling vertices in path at fillseed 80304 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 80304 nlabel 9213 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041001.label Connecting and filling vertices in path at fillseed 85197 Finding path.............................................................................................................................................................................................................................................................. done Filling 85197 nlabel 4289 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041101.label Connecting and filling vertices in path at fillseed 112611 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112611 nlabel 6550 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041201.label Connecting and filling vertices in path at fillseed 83744 Finding path.......................................................................................................................................................................................................................... done Filling 83744 nlabel 6888 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041301.label Connecting and filling vertices in path at fillseed 87219 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 87219 nlabel 3785 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041401.label Connecting and filling vertices in path at fillseed 126197 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 126197 nlabel 14479 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041501.label Connecting and filling vertices in path at fillseed 123879 Finding path................................................................................................................................................................... done Filling 123879 nlabel 4586 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041601.label Connecting and filling vertices in path at fillseed 87781 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 87781 nlabel 7133 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041701.label Connecting and filling vertices in path at fillseed 85558 Finding path.................................................................................................................................................................................................................................................................... done Filling 85558 nlabel 6854 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041801.label Connecting and filling vertices in path at fillseed 87210 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 87210 nlabel 4516 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041901.label Connecting and filling vertices in path at fillseed 82165 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82165 nlabel 14450 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042001.label Connecting and filling vertices in path at fillseed 86802 Finding path................................................................................................................................................................ done Filling 86802 nlabel 4414 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042101.label Connecting and filling vertices in path at fillseed 87782 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 87782 nlabel 7248 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042201.label Connecting and filling vertices in path at fillseed 85543 Finding path................................................................................................................................................................................................................. done Filling 85543 nlabel 3878 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042301.label Connecting and filling vertices in path at fillseed 86331 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 86331 nlabel 5006 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042401.label Connecting and filling vertices in path at fillseed 122178 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 122178 nlabel 14424 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042501.label Connecting and filling vertices in path at fillseed 88011 Finding path............................................................................................................... done Filling 88011 nlabel 4334 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042601.label Connecting and filling vertices in path at fillseed 86409 Finding path.......................................................................................................................................................................................................................................................... done Filling 86409 nlabel 7277 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042701.label Connecting and filling vertices in path at fillseed 85737 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 85737 nlabel 10382 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042801.label Connecting and filling vertices in path at fillseed 86140 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86140 nlabel 14010 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042901.label Connecting and filling vertices in path at fillseed 87509 Finding path............................................................................................................................................................... done Filling 87509 nlabel 5566 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043001.label Connecting and filling vertices in path at fillseed 88506 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88506 nlabel 7067 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043101.label Connecting and filling vertices in path at fillseed 112634 Finding path........................................................................................................................................................................................................................... done Filling 112634 nlabel 4085 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043201.label Connecting and filling vertices in path at fillseed 87192 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 87192 nlabel 4934 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043301.label Connecting and filling vertices in path at fillseed 86833 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86833 nlabel 16222 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043401.label Connecting and filling vertices in path at fillseed 88011 Finding path............................................................................................................................................................................ done Filling 88011 nlabel 4246 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043501.label Connecting and filling vertices in path at fillseed 87911 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 87911 nlabel 7444 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043601.label Connecting and filling vertices in path at fillseed 86387 Finding path............................................................................................................................................................................................................................................................ done Filling 86387 nlabel 4419 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043701.label Connecting and filling vertices in path at fillseed 85764 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 85764 nlabel 10233 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043801.label Connecting and filling vertices in path at fillseed 91135 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91135 nlabel 15550 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043901.label Connecting and filling vertices in path at fillseed 88751 Finding path....................................................................................................................................... done Filling 88751 nlabel 4804 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044001.label Connecting and filling vertices in path at fillseed 91287 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91287 nlabel 5771 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044101.label Connecting and filling vertices in path at fillseed 88779 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 88779 nlabel 9223 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044201.label Connecting and filling vertices in path at fillseed 90937 Finding path....................................................................................................................................................................................................................................... done Filling 90937 nlabel 8975 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044301.label Connecting and filling vertices in path at fillseed 90428 Finding path........................................................................................................... done Filling 90428 nlabel 4466 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044401.label Connecting and filling vertices in path at fillseed 87250 Finding path.................................................................................................................................................................................................................... done Filling 87250 nlabel 6470 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044501.label Connecting and filling vertices in path at fillseed 89467 Finding path............................................................................................................................................................................................................................................................ done Filling 89467 nlabel 6845 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044601.label Connecting and filling vertices in path at fillseed 87885 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 87885 nlabel 7682 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044701.label Connecting and filling vertices in path at fillseed 91120 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91120 nlabel 15386 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044801.label Connecting and filling vertices in path at fillseed 94218 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 94218 nlabel 5219 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044901.label Connecting and filling vertices in path at fillseed 88002 Finding path............................................................................................................................................................................................................... done Filling 88002 nlabel 6893 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045001.label Connecting and filling vertices in path at fillseed 89397 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89397 nlabel 4081 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045101.label Connecting and filling vertices in path at fillseed 88418 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88418 nlabel 14106 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045201.label Connecting and filling vertices in path at fillseed 114365 Finding path.................................................................................................................. done Filling 114365 nlabel 5031 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045301.label Connecting and filling vertices in path at fillseed 88700 Finding path................................................................................................................................................................................................................................................. done Filling 88700 nlabel 5825 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045401.label Connecting and filling vertices in path at fillseed 91378 Finding path............................................................................................................................................................................................... done Filling 91378 nlabel 6884 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045501.label Connecting and filling vertices in path at fillseed 88617 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88617 nlabel 7359 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045601.label Connecting and filling vertices in path at fillseed 91675 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91675 nlabel 11864 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045701.label Connecting and filling vertices in path at fillseed 129375 Finding path................................................................................................................................ done Filling 129375 nlabel 5186 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045801.label Connecting and filling vertices in path at fillseed 93618 Finding path....................................................................................................................................................................................................................... done Filling 93618 nlabel 6265 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045901.label Connecting and filling vertices in path at fillseed 90059 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 90059 nlabel 4807 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046001.label Connecting and filling vertices in path at fillseed 90588 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 90588 nlabel 10104 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046101.label Connecting and filling vertices in path at fillseed 92611 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92611 nlabel 15351 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046201.label Connecting and filling vertices in path at fillseed 93164 Finding path.................................................................................................................................... done Filling 93164 nlabel 5397 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046301.label Connecting and filling vertices in path at fillseed 92109 Finding path.................................................................................................................................................................................................. done Filling 92109 nlabel 6934 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046401.label Connecting and filling vertices in path at fillseed 90022 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 90022 nlabel 7137 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046501.label Connecting and filling vertices in path at fillseed 89198 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89198 nlabel 13111 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046601.label Connecting and filling vertices in path at fillseed 93419 Finding path................................................................................................................................................................................................................................................. done Filling 93419 nlabel 4406 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046701.label Connecting and filling vertices in path at fillseed 125227 Finding path............................................................................................................................................................................................................................................ done Filling 125227 nlabel 5498 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046801.label Connecting and filling vertices in path at fillseed 91410 Finding path............................................................................................................................................................................. done Filling 91410 nlabel 7780 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046901.label Connecting and filling vertices in path at fillseed 92802 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 92802 nlabel 8932 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047001.label Connecting and filling vertices in path at fillseed 93124 Finding path........................................................................................................................................................................................................................................ done Filling 93124 nlabel 8890 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047101.label Connecting and filling vertices in path at fillseed 93861 Finding path............................................................................................................................................. done Filling 93861 nlabel 4847 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047201.label Connecting and filling vertices in path at fillseed 95492 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 95492 nlabel 6334 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047301.label Connecting and filling vertices in path at fillseed 134354 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 134354 nlabel 5837 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047401.label Connecting and filling vertices in path at fillseed 91253 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91253 nlabel 12453 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047501.label Connecting and filling vertices in path at fillseed 94137 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 94137 nlabel 5582 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047601.label Connecting and filling vertices in path at fillseed 96160 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 96160 nlabel 5419 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047701.label Connecting and filling vertices in path at fillseed 93608 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93608 nlabel 5963 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047801.label Connecting and filling vertices in path at fillseed 93030 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 93030 nlabel 9821 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047901.label Connecting and filling vertices in path at fillseed 93942 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 93942 nlabel 13941 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048001.label Connecting and filling vertices in path at fillseed 96186 Finding path...................................................................................................................................................................................................................... done Filling 96186 nlabel 5014 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048101.label Connecting and filling vertices in path at fillseed 93648 Finding path......................................................................................................................................................................... done Filling 93648 nlabel 7527 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048201.label Connecting and filling vertices in path at fillseed 92980 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 92980 nlabel 10659 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048301.label Connecting and filling vertices in path at fillseed 94555 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 94555 nlabel 12711 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048401.label Connecting and filling vertices in path at fillseed 96594 Finding path...................................................................................................................................................................... done Filling 96594 nlabel 5236 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048501.label Connecting and filling vertices in path at fillseed 91349 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91349 nlabel 5623 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048601.label Connecting and filling vertices in path at fillseed 93685 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93685 nlabel 8596 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048701.label Connecting and filling vertices in path at fillseed 97852 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 97852 nlabel 12173 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048801.label Connecting and filling vertices in path at fillseed 94528 Finding path.................................................................................................................. done Filling 94528 nlabel 4969 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048901.label Connecting and filling vertices in path at fillseed 96170 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 96170 nlabel 6385 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049001.label Connecting and filling vertices in path at fillseed 92834 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92834 nlabel 5325 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049101.label Connecting and filling vertices in path at fillseed 94288 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 94288 nlabel 7469 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049201.label Connecting and filling vertices in path at fillseed 98256 Finding path....................................................................................................................................................................................................................................................... done Filling 98256 nlabel 9039 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049301.label Connecting and filling vertices in path at fillseed 95791 Finding path..................................................................................................................... done Filling 95791 nlabel 5030 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049401.label Connecting and filling vertices in path at fillseed 96162 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 96162 nlabel 5665 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049501.label Connecting and filling vertices in path at fillseed 94286 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 94286 nlabel 6271 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049601.label Connecting and filling vertices in path at fillseed 94889 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 94889 nlabel 9079 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049701.label Connecting and filling vertices in path at fillseed 97761 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97761 nlabel 14134 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049801.label Connecting and filling vertices in path at fillseed 98924 Finding path.............................................................................................................. done Filling 98924 nlabel 5904 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049901.label Connecting and filling vertices in path at fillseed 94937 Finding path....................................................................................................................................................................................................................... done Filling 94937 nlabel 6193 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050001.label Connecting and filling vertices in path at fillseed 118328 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 118328 nlabel 7205 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050101.label Connecting and filling vertices in path at fillseed 94902 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 94902 nlabel 7022 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050201.label Connecting and filling vertices in path at fillseed 99139 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 99139 nlabel 9322 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050301.label Connecting and filling vertices in path at fillseed 97262 Finding path.......................................................................................................................................................................................................................................................... done Filling 97262 nlabel 5590 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050401.label Connecting and filling vertices in path at fillseed 97427 Finding path........................................................................................................................................................................ done Filling 97427 nlabel 5961 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050501.label Connecting and filling vertices in path at fillseed 98736 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 98736 nlabel 10081 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050601.label Connecting and filling vertices in path at fillseed 98923 Finding path................................................................................................................................................... done Filling 98923 nlabel 5804 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050701.label Connecting and filling vertices in path at fillseed 101577 Finding path..................................................................................................... done Filling 101577 nlabel 5130 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050801.label Connecting and filling vertices in path at fillseed 99289 Finding path.............................................................................................................................................................. done Filling 99289 nlabel 7178 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050901.label Connecting and filling vertices in path at fillseed 100764 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 100764 nlabel 9486 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051001.label Connecting and filling vertices in path at fillseed 101566 Finding path........................................................................................................ done Filling 101566 nlabel 5031 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051101.label Connecting and filling vertices in path at fillseed 98009 Finding path......................................................................................................................................................................... done Filling 98009 nlabel 5450 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051201.label Connecting and filling vertices in path at fillseed 98615 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98615 nlabel 7212 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051301.label Connecting and filling vertices in path at fillseed 100551 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 100551 nlabel 11281 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051401.label Connecting and filling vertices in path at fillseed 99780 Finding path................................................................................................................................................................................................................ done Filling 99780 nlabel 5810 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051501.label Connecting and filling vertices in path at fillseed 100309 Finding path.................................................................................................................................................................. done Filling 100309 nlabel 7131 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051601.label Connecting and filling vertices in path at fillseed 100803 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 100803 nlabel 9750 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051701.label Connecting and filling vertices in path at fillseed 127309 Finding path................................................................................................................................. done Filling 127309 nlabel 5795 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051801.label Connecting and filling vertices in path at fillseed 99763 Finding path...................................................................................................................................................................................... done Filling 99763 nlabel 5503 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051901.label Connecting and filling vertices in path at fillseed 100881 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 100881 nlabel 8110 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052001.label Connecting and filling vertices in path at fillseed 100714 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 100714 nlabel 10096 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052101.label Connecting and filling vertices in path at fillseed 100831 Finding path................................................................................................................................................................. done Filling 100831 nlabel 5571 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052201.label Connecting and filling vertices in path at fillseed 100864 Finding path......................................................................................................................................................................................................... done Filling 100864 nlabel 6676 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052301.label Connecting and filling vertices in path at fillseed 126073 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 126073 nlabel 7922 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052401.label Connecting and filling vertices in path at fillseed 102350 Finding path................................................................................................................. done Filling 102350 nlabel 5616 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052501.label Connecting and filling vertices in path at fillseed 101387 Finding path.................................................................................................................................................................... done Filling 101387 nlabel 7148 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052601.label Connecting and filling vertices in path at fillseed 100389 Finding path................................................................................................................................................................................................................................................................................................ done Filling 100389 nlabel 9294 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052701.label Connecting and filling vertices in path at fillseed 118134 Finding path............................................................................................................................... done Filling 118134 nlabel 4936 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052801.label Connecting and filling vertices in path at fillseed 101368 Finding path....................................................................................................................................................................................... done Filling 101368 nlabel 5402 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052901.label Connecting and filling vertices in path at fillseed 102491 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 102491 nlabel 6849 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053001.label Connecting and filling vertices in path at fillseed 102264 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 102264 nlabel 9354 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053101.label Connecting and filling vertices in path at fillseed 102749 Finding path............................................................................................................................... done Filling 102749 nlabel 5703 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053201.label Connecting and filling vertices in path at fillseed 102567 Finding path............................................................................................................................................................................................................................................. done Filling 102567 nlabel 6600 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053301.label Connecting and filling vertices in path at fillseed 102131 Finding path........................................................................................................................................................................................................................................................... done Filling 102131 nlabel 7202 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053401.label Connecting and filling vertices in path at fillseed 104847 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 104847 nlabel 5745 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053501.label Connecting and filling vertices in path at fillseed 119960 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 119960 nlabel 6794 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053601.label Connecting and filling vertices in path at fillseed 113330 Finding path.................................................................................................................................................................................................................................................................................. done Filling 113330 nlabel 8046 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053701.label Connecting and filling vertices in path at fillseed 102897 Finding path.............................................................................................................................................. done Filling 102897 nlabel 5644 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053801.label Connecting and filling vertices in path at fillseed 104288 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 104288 nlabel 6248 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053901.label Connecting and filling vertices in path at fillseed 103634 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 103634 nlabel 7085 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054001.label Connecting and filling vertices in path at fillseed 103020 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 103020 nlabel 8674 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054101.label Connecting and filling vertices in path at fillseed 103869 Finding path............................................................................................................................. done Filling 103869 nlabel 5311 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054201.label Connecting and filling vertices in path at fillseed 136170 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 136170 nlabel 6700 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054301.label Connecting and filling vertices in path at fillseed 103894 Finding path...................................................................................................................................................................................................... done Filling 103894 nlabel 7232 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054401.label Connecting and filling vertices in path at fillseed 104519 Finding path......................................................................................................................... done Filling 104519 nlabel 5183 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054501.label Connecting and filling vertices in path at fillseed 103692 Finding path.................................................................................................................................................................... done Filling 103692 nlabel 5305 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054601.label Connecting and filling vertices in path at fillseed 104356 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 104356 nlabel 8157 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054701.label Connecting and filling vertices in path at fillseed 104189 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 104189 nlabel 8430 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054801.label Connecting and filling vertices in path at fillseed 105857 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 105857 nlabel 6024 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054901.label Connecting and filling vertices in path at fillseed 127853 Finding path..................................................................................................................................................................................................................................................................................... done Filling 127853 nlabel 8922 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055001.label Connecting and filling vertices in path at fillseed 104623 Finding path............................................................................................. done Filling 104623 nlabel 5118 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055101.label Connecting and filling vertices in path at fillseed 103693 Finding path................................................................................................................................. done Filling 103693 nlabel 4830 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055201.label Connecting and filling vertices in path at fillseed 104902 Finding path........................................................................................................................................................................................................................... done Filling 104902 nlabel 6592 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055301.label Connecting and filling vertices in path at fillseed 117274 Finding path.......................................................................................................................................................................... done Filling 117274 nlabel 6841 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055401.label Connecting and filling vertices in path at fillseed 106658 Finding path...................................................................................................................................... done Filling 106658 nlabel 5615 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055501.label Connecting and filling vertices in path at fillseed 105877 Finding path..................................................................................................................................................................................... done Filling 105877 nlabel 6261 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055601.label Connecting and filling vertices in path at fillseed 118029 Finding path............................................................................................................................................................................................. done Filling 118029 nlabel 7048 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055701.label Connecting and filling vertices in path at fillseed 117073 Finding path.................................................................................................................................. done Filling 117073 nlabel 5474 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055801.label Connecting and filling vertices in path at fillseed 121042 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 121042 nlabel 6429 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055901.label Connecting and filling vertices in path at fillseed 105985 Finding path......................................................................................................................................................................................................................................................... done Filling 105985 nlabel 7986 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056001.label Connecting and filling vertices in path at fillseed 117925 Finding path........................................................................................................................................................................................................................................................... done Filling 117925 nlabel 4862 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056101.label Connecting and filling vertices in path at fillseed 106316 Finding path............................................................................................................................................................................................................ done Filling 106316 nlabel 5149 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056201.label Connecting and filling vertices in path at fillseed 105921 Finding path....................................................................................................................................................................................................... done Filling 105921 nlabel 6943 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056301.label Connecting and filling vertices in path at fillseed 107949 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107949 nlabel 6948 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056401.label Connecting and filling vertices in path at fillseed 136061 Finding path.................................................................................................................................................................................. done Filling 136061 nlabel 4557 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056501.label Connecting and filling vertices in path at fillseed 108398 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108398 nlabel 5531 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056601.label Connecting and filling vertices in path at fillseed 108313 Finding path................................................................................................................................................................................................ done Filling 108313 nlabel 6094 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056701.label Connecting and filling vertices in path at fillseed 109180 Finding path......................................................................................................................... done Filling 109180 nlabel 4945 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056801.label Connecting and filling vertices in path at fillseed 109150 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 109150 nlabel 6340 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056901.label Connecting and filling vertices in path at fillseed 108393 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 108393 nlabel 5736 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057001.label Connecting and filling vertices in path at fillseed 119466 Finding path......................................................................................................................................................................... done Filling 119466 nlabel 4924 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057101.label Connecting and filling vertices in path at fillseed 108866 Finding path.................................................................................................................................................................................................................. done Filling 108866 nlabel 6181 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057201.label Connecting and filling vertices in path at fillseed 108393 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108393 nlabel 6911 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057301.label Connecting and filling vertices in path at fillseed 108451 Finding path................................................................................................................................................................ done Filling 108451 nlabel 4848 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057401.label Connecting and filling vertices in path at fillseed 108796 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 108796 nlabel 6497 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057501.label Connecting and filling vertices in path at fillseed 107879 Finding path......................................................................................................................................... done Filling 107879 nlabel 5627 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057601.label Connecting and filling vertices in path at fillseed 108840 Finding path............................................................................................................................................................................................ done Filling 108840 nlabel 4318 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057701.label Connecting and filling vertices in path at fillseed 108770 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 108770 nlabel 6133 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057801.label Connecting and filling vertices in path at fillseed 109133 Finding path............................................................................................................................................................................................. done Filling 109133 nlabel 5950 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057901.label Connecting and filling vertices in path at fillseed 109187 Finding path............................................................................................................. done Filling 109187 nlabel 4021 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058001.label Connecting and filling vertices in path at fillseed 108874 Finding path................................................................................................................................................................... done Filling 108874 nlabel 6215 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058101.label Connecting and filling vertices in path at fillseed 110633 Finding path...................................................................................................................................................... done Filling 110633 nlabel 4158 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058201.label Connecting and filling vertices in path at fillseed 109549 Finding path....................................................................................................................................... done Filling 109549 nlabel 4502 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058301.label Connecting and filling vertices in path at fillseed 109480 Finding path..................................................................................................................................................................................... done Filling 109480 nlabel 6293 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058401.label Connecting and filling vertices in path at fillseed 109484 Finding path........................................................................................................................................................... done Filling 109484 nlabel 5822 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058501.label Connecting and filling vertices in path at fillseed 109199 Finding path........................................................................................................................................ done Filling 109199 nlabel 3776 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058601.label Connecting and filling vertices in path at fillseed 109596 Finding path............................................................................................................................................................. done Filling 109596 nlabel 6322 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058701.label Connecting and filling vertices in path at fillseed 109848 Finding path................................................................................................................................................................... done Filling 109848 nlabel 5643 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058801.label Connecting and filling vertices in path at fillseed 109952 Finding path...................................................................................................................................... done Filling 109952 nlabel 4116 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058901.label Connecting and filling vertices in path at fillseed 110230 Finding path................................................................................................................................................................ done Filling 110230 nlabel 6286 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059001.label Connecting and filling vertices in path at fillseed 110992 Finding path................................................................................................................................................................... done Filling 110992 nlabel 4326 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059101.label Connecting and filling vertices in path at fillseed 115831 Finding path................................................................................................................................................................................................................... done Filling 115831 nlabel 6042 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059201.label Connecting and filling vertices in path at fillseed 110158 Finding path................................................................................................................. done Filling 110158 nlabel 5992 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059301.label Connecting and filling vertices in path at fillseed 110331 Finding path............................................................................................................................................ done Filling 110331 nlabel 3924 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059401.label Connecting and filling vertices in path at fillseed 109692 Finding path..................................................................................................................... done Filling 109692 nlabel 5617 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059501.label Connecting and filling vertices in path at fillseed 111350 Finding path................................................................................................................................................................ done Filling 111350 nlabel 3974 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059601.label Connecting and filling vertices in path at fillseed 110702 Finding path............................................................................................................................................................................................................... done Filling 110702 nlabel 5657 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059701.label Connecting and filling vertices in path at fillseed 110517 Finding path............................................................................................................... done Filling 110517 nlabel 5747 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059801.label Connecting and filling vertices in path at fillseed 121282 Finding path..................................................................................................................................................................... done Filling 121282 nlabel 4093 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059901.label Connecting and filling vertices in path at fillseed 111038 Finding path............................................................................................................................................................................... done Filling 111038 nlabel 5103 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060001.label Connecting and filling vertices in path at fillseed 129615 Finding path............................................................................................................................................. done Filling 129615 nlabel 4550 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060101.label Connecting and filling vertices in path at fillseed 110101 Finding path..................................................................................................... done Filling 110101 nlabel 5820 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060201.label Connecting and filling vertices in path at fillseed 119569 Finding path..................................................................................................................................... done Filling 119569 nlabel 4042 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060301.label Connecting and filling vertices in path at fillseed 111627 Finding path................................................................................................................................................... done Filling 111627 nlabel 5778 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060401.label Connecting and filling vertices in path at fillseed 117070 Finding path..................................................................................................................................................... done Filling 117070 nlabel 4179 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060501.label Connecting and filling vertices in path at fillseed 112893 Finding path..................................................................................................................................................... done Filling 112893 nlabel 4563 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060601.label Connecting and filling vertices in path at fillseed 111630 Finding path.......................................................................................................................................... done Filling 111630 nlabel 5543 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060701.label Connecting and filling vertices in path at fillseed 111593 Finding path.............................................................................................................................................. done Filling 111593 nlabel 3621 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060801.label Connecting and filling vertices in path at fillseed 111596 Finding path........................................................................................................................................................................................... done Filling 111596 nlabel 5768 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060901.label Connecting and filling vertices in path at fillseed 124706 Finding path.......................................................................................................................... done Filling 124706 nlabel 5681 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061001.label Connecting and filling vertices in path at fillseed 111801 Finding path........................................................................................................................................................... done Filling 111801 nlabel 4774 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061101.label Connecting and filling vertices in path at fillseed 111692 Finding path............................................................................................................................................................................................................... done Filling 111692 nlabel 6331 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061201.label Connecting and filling vertices in path at fillseed 111795 Finding path.............................................................................................................................................................................................................................. done Filling 111795 nlabel 4326 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061301.label Connecting and filling vertices in path at fillseed 111904 Finding path........................................................................................................................................................... done Filling 111904 nlabel 5287 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061401.label Connecting and filling vertices in path at fillseed 129766 Finding path................................................................................................................................... done Filling 129766 nlabel 4358 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061501.label Connecting and filling vertices in path at fillseed 122057 Finding path...................................................................................................................................................... done Filling 122057 nlabel 5247 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061601.label Connecting and filling vertices in path at fillseed 111751 Finding path................................................................................................................................... done Filling 111751 nlabel 5004 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061701.label Connecting and filling vertices in path at fillseed 113517 Finding path.......................................................................................................................................................... done Filling 113517 nlabel 4480 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061801.label Connecting and filling vertices in path at fillseed 112136 Finding path.......................................................................................................................................................................................................................................... done Filling 112136 nlabel 5730 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061901.label ================= compute_lgi('lh.pial','lh.pial-outer-smoothed','/scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc',100,25,'/scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.04 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 123904 face 10000 / 123904 face 15000 / 123904 face 20000 / 123904 face 25000 / 123904 face 30000 / 123904 face 35000 / 123904 face 40000 / 123904 face 45000 / 123904 face 50000 / 123904 face 55000 / 123904 face 60000 / 123904 face 65000 / 123904 face 70000 / 123904 face 75000 / 123904 face 80000 / 123904 face 85000 / 123904 face 90000 / 123904 face 95000 / 123904 face 100000 / 123904 face 105000 / 123904 face 110000 / 123904 face 115000 / 123904 face 120000 / 123904 reading normals info ... mesh_outer = struct with fields: vertices: [61954x3 double] faces: [123904x3 double] facesOfVertex: [61954x1 struct] vertexNormal: [61954x3 double] preparing pial mesh structure ... face 5000 / 274572 face 10000 / 274572 face 15000 / 274572 face 20000 / 274572 face 25000 / 274572 face 30000 / 274572 face 35000 / 274572 face 40000 / 274572 face 45000 / 274572 face 50000 / 274572 face 55000 / 274572 face 60000 / 274572 face 65000 / 274572 face 70000 / 274572 face 75000 / 274572 face 80000 / 274572 face 85000 / 274572 face 90000 / 274572 face 95000 / 274572 face 100000 / 274572 face 105000 / 274572 face 110000 / 274572 face 115000 / 274572 face 120000 / 274572 face 125000 / 274572 face 130000 / 274572 face 135000 / 274572 face 140000 / 274572 face 145000 / 274572 face 150000 / 274572 face 155000 / 274572 face 160000 / 274572 face 165000 / 274572 face 170000 / 274572 face 175000 / 274572 face 180000 / 274572 face 185000 / 274572 face 190000 / 274572 face 195000 / 274572 face 200000 / 274572 face 205000 / 274572 face 210000 / 274572 face 215000 / 274572 face 220000 / 274572 face 225000 / 274572 face 230000 / 274572 face 235000 / 274572 face 240000 / 274572 face 245000 / 274572 face 250000 / 274572 face 255000 / 274572 face 260000 / 274572 face 265000 / 274572 face 270000 / 274572 mesh_total = struct with fields: vertices: [137288x3 double] faces: [274572x3 double] facesOfVertex: [137288x1 struct] ...searching for mesh edges...done (57.01 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 1.8818 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 2.1717 lGI for vertex number 201 of the outer mesh is 2.2308 lGI for vertex number 301 of the outer mesh is 2.0149 lGI for vertex number 401 of the outer mesh is 2.8159 lGI for vertex number 501 of the outer mesh is 2.099 lGI for vertex number 601 of the outer mesh is 2.4427 lGI for vertex number 701 of the outer mesh is 3.2339 lGI for vertex number 801 of the outer mesh is 2.1375 lGI for vertex number 901 of the outer mesh is 2.6599 lGI for vertex number 1001 of the outer mesh is 1.9612 lGI for vertex number 1101 of the outer mesh is 2.1238 lGI for vertex number 1201 of the outer mesh is 2.7112 lGI for vertex number 1301 of the outer mesh is 2.8115 lGI for vertex number 1401 of the outer mesh is 3.0731 lGI for vertex number 1501 of the outer mesh is 2.1558 lGI for vertex number 1601 of the outer mesh is 2.9755 lGI for vertex number 1701 of the outer mesh is 2.8744 lGI for vertex number 1801 of the outer mesh is 3.0792 lGI for vertex number 1901 of the outer mesh is 2.2084 lGI for vertex number 2001 of the outer mesh is 2.7323 lGI for vertex number 2101 of the outer mesh is 2.2956 lGI for vertex number 2201 of the outer mesh is 3.2165 lGI for vertex number 2301 of the outer mesh is 2.8017 lGI for vertex number 2401 of the outer mesh is 2.8314 lGI for vertex number 2501 of the outer mesh is 2.1334 lGI for vertex number 2601 of the outer mesh is 3.522 lGI for vertex number 2701 of the outer mesh is 2.6277 lGI for vertex number 2801 of the outer mesh is 2.4088 lGI for vertex number 2901 of the outer mesh is 3.7384 lGI for vertex number 3001 of the outer mesh is 2.6025 lGI for vertex number 3101 of the outer mesh is 3.7023 lGI for vertex number 3201 of the outer mesh is 3.8834 lGI for vertex number 3301 of the outer mesh is 2.2752 lGI for vertex number 3401 of the outer mesh is 3.4625 lGI for vertex number 3501 of the outer mesh is 3.4357 lGI for vertex number 3601 of the outer mesh is 3.7058 lGI for vertex number 3701 of the outer mesh is 3.3017 lGI for vertex number 3801 of the outer mesh is 3.2416 lGI for vertex number 3901 of the outer mesh is 2.3465 lGI for vertex number 4001 of the outer mesh is 3.8075 lGI for vertex number 4101 of the outer mesh is 3.2015 lGI for vertex number 4201 of the outer mesh is 2.7759 lGI for vertex number 4301 of the outer mesh is 2.2123 lGI for vertex number 4401 of the outer mesh is 4.1958 lGI for vertex number 4501 of the outer mesh is 3.7308 lGI for vertex number 4601 of the outer mesh is 2.3666 lGI for vertex number 4701 of the outer mesh is 3.7884 lGI for vertex number 4801 of the outer mesh is 4.1219 lGI for vertex number 4901 of the outer mesh is 2.894 lGI for vertex number 5001 of the outer mesh is 3.8512 lGI for vertex number 5101 of the outer mesh is 3.5795 lGI for vertex number 5201 of the outer mesh is 4.4589 lGI for vertex number 5301 of the outer mesh is 2.7063 lGI for vertex number 5401 of the outer mesh is 3.5053 lGI for vertex number 5501 of the outer mesh is 2.5201 lGI for vertex number 5601 of the outer mesh is 4.5128 lGI for vertex number 5701 of the outer mesh is 2.175 lGI for vertex number 5801 of the outer mesh is 2.5676 lGI for vertex number 5901 of the outer mesh is 3.1311 lGI for vertex number 6001 of the outer mesh is 3.739 lGI for vertex number 6101 of the outer mesh is 2.9447 lGI for vertex number 6201 of the outer mesh is 3.8978 lGI for vertex number 6301 of the outer mesh is 2.9987 lGI for vertex number 6401 of the outer mesh is 3.9212 lGI for vertex number 6501 of the outer mesh is 2.7715 lGI for vertex number 6601 of the outer mesh is 3.8018 lGI for vertex number 6701 of the outer mesh is 4.102 lGI for vertex number 6801 of the outer mesh is 4.2129 lGI for vertex number 6901 of the outer mesh is 2.5105 lGI for vertex number 7001 of the outer mesh is 2.8868 lGI for vertex number 7101 of the outer mesh is 3.1081 lGI for vertex number 7201 of the outer mesh is 4.1975 lGI for vertex number 7301 of the outer mesh is 3.0076 lGI for vertex number 7401 of the outer mesh is 3.7827 lGI for vertex number 7501 of the outer mesh is 3.5439 lGI for vertex number 7601 of the outer mesh is 4.3034 lGI for vertex number 7701 of the outer mesh is 2.6397 lGI for vertex number 7801 of the outer mesh is 2.8918 lGI for vertex number 7901 of the outer mesh is 4.2779 lGI for vertex number 8001 of the outer mesh is 2.8624 lGI for vertex number 8101 of the outer mesh is 2.7058 lGI for vertex number 8201 of the outer mesh is 2.9578 lGI for vertex number 8301 of the outer mesh is 4.2526 lGI for vertex number 8401 of the outer mesh is 3.1847 lGI for vertex number 8501 of the outer mesh is 2.9012 lGI for vertex number 8601 of the outer mesh is 2.985 lGI for vertex number 8701 of the outer mesh is 3.8011 lGI for vertex number 8801 of the outer mesh is 2.8892 lGI for vertex number 8901 of the outer mesh is 3.3515 lGI for vertex number 9001 of the outer mesh is 4.2293 lGI for vertex number 9101 of the outer mesh is 4.0867 lGI for vertex number 9201 of the outer mesh is 3.7241 lGI for vertex number 9301 of the outer mesh is 2.6358 lGI for vertex number 9401 of the outer mesh is 3.2825 lGI for vertex number 9501 of the outer mesh is 4.0501 lGI for vertex number 9601 of the outer mesh is 3.0066 lGI for vertex number 9701 of the outer mesh is 3.7987 lGI for vertex number 9801 of the outer mesh is 3.8711 lGI for vertex number 9901 of the outer mesh is 3.2526 lGI for vertex number 10001 of the outer mesh is 3.1749 ratio saved at 10001 lGI for vertex number 10101 of the outer mesh is 2.8443 lGI for vertex number 10201 of the outer mesh is 3.9457 lGI for vertex number 10301 of the outer mesh is 3.0385 lGI for vertex number 10401 of the outer mesh is 2.9981 lGI for vertex number 10501 of the outer mesh is 2.9428 lGI for vertex number 10601 of the outer mesh is 4.4189 lGI for vertex number 10701 of the outer mesh is 2.8851 lGI for vertex number 10801 of the outer mesh is 2.8322 lGI for vertex number 10901 of the outer mesh is 2.8333 lGI for vertex number 11001 of the outer mesh is 3.8275 lGI for vertex number 11101 of the outer mesh is 4.0215 lGI for vertex number 11201 of the outer mesh is 3.2383 lGI for vertex number 11301 of the outer mesh is 3.3571 lGI for vertex number 11401 of the outer mesh is 3.7775 lGI for vertex number 11501 of the outer mesh is 4.0581 lGI for vertex number 11601 of the outer mesh is 3.2369 lGI for vertex number 11701 of the outer mesh is 3.604 lGI for vertex number 11801 of the outer mesh is 3.8796 lGI for vertex number 11901 of the outer mesh is 4.2772 lGI for vertex number 12001 of the outer mesh is 2.9061 lGI for vertex number 12101 of the outer mesh is 2.7154 lGI for vertex number 12201 of the outer mesh is 4.2332 lGI for vertex number 12301 of the outer mesh is 3.7545 lGI for vertex number 12401 of the outer mesh is 3.6362 lGI for vertex number 12501 of the outer mesh is 3.0928 lGI for vertex number 12601 of the outer mesh is 4.1581 lGI for vertex number 12701 of the outer mesh is 3.8508 lGI for vertex number 12801 of the outer mesh is 3.0035 lGI for vertex number 12901 of the outer mesh is 2.8892 lGI for vertex number 13001 of the outer mesh is 4.2112 lGI for vertex number 13101 of the outer mesh is 2.9049 lGI for vertex number 13201 of the outer mesh is 3.1761 lGI for vertex number 13301 of the outer mesh is 2.8366 lGI for vertex number 13401 of the outer mesh is 2.8096 lGI for vertex number 13501 of the outer mesh is 3.6002 lGI for vertex number 13601 of the outer mesh is 3.6958 lGI for vertex number 13701 of the outer mesh is 2.8547 lGI for vertex number 13801 of the outer mesh is 4.1436 lGI for vertex number 13901 of the outer mesh is 3.9833 lGI for vertex number 14001 of the outer mesh is 3.1145 lGI for vertex number 14101 of the outer mesh is 2.6709 lGI for vertex number 14201 of the outer mesh is 2.9572 lGI for vertex number 14301 of the outer mesh is 5.0446 lGI for vertex number 14401 of the outer mesh is 3.5251 lGI for vertex number 14501 of the outer mesh is 2.7663 lGI for vertex number 14601 of the outer mesh is 4.0851 lGI for vertex number 14701 of the outer mesh is 3.0052 lGI for vertex number 14801 of the outer mesh is 3.3398 lGI for vertex number 14901 of the outer mesh is 2.7426 lGI for vertex number 15001 of the outer mesh is 4.1913 lGI for vertex number 15101 of the outer mesh is 2.7892 lGI for vertex number 15201 of the outer mesh is 3.8754 lGI for vertex number 15301 of the outer mesh is 2.7894 lGI for vertex number 15401 of the outer mesh is 3.3706 lGI for vertex number 15501 of the outer mesh is 2.9117 lGI for vertex number 15601 of the outer mesh is 3.8005 lGI for vertex number 15701 of the outer mesh is 3.303 lGI for vertex number 15801 of the outer mesh is 2.8829 lGI for vertex number 15901 of the outer mesh is 2.6582 lGI for vertex number 16001 of the outer mesh is 2.7299 lGI for vertex number 16101 of the outer mesh is 4.309 lGI for vertex number 16201 of the outer mesh is 2.912 lGI for vertex number 16301 of the outer mesh is 3.9227 lGI for vertex number 16401 of the outer mesh is 2.8005 lGI for vertex number 16501 of the outer mesh is 4.4551 lGI for vertex number 16601 of the outer mesh is 2.9834 lGI for vertex number 16701 of the outer mesh is 3.8377 lGI for vertex number 16801 of the outer mesh is 2.8089 lGI for vertex number 16901 of the outer mesh is 4.5362 lGI for vertex number 17001 of the outer mesh is 2.8677 lGI for vertex number 17101 of the outer mesh is 3.1844 lGI for vertex number 17201 of the outer mesh is 3.7588 lGI for vertex number 17301 of the outer mesh is 4.723 lGI for vertex number 17401 of the outer mesh is 2.5312 lGI for vertex number 17501 of the outer mesh is 2.862 lGI for vertex number 17601 of the outer mesh is 2.7775 lGI for vertex number 17701 of the outer mesh is 4.6802 lGI for vertex number 17801 of the outer mesh is 2.8689 lGI for vertex number 17901 of the outer mesh is 2.9635 lGI for vertex number 18001 of the outer mesh is 2.439 lGI for vertex number 18101 of the outer mesh is 4.523 lGI for vertex number 18201 of the outer mesh is 2.7487 lGI for vertex number 18301 of the outer mesh is 3.3528 lGI for vertex number 18401 of the outer mesh is 2.916 lGI for vertex number 18501 of the outer mesh is 3.8886 lGI for vertex number 18601 of the outer mesh is 2.8315 lGI for vertex number 18701 of the outer mesh is 3.0831 lGI for vertex number 18801 of the outer mesh is 3.9334 lGI for vertex number 18901 of the outer mesh is 3.5606 lGI for vertex number 19001 of the outer mesh is 3.3721 lGI for vertex number 19101 of the outer mesh is 2.5936 lGI for vertex number 19201 of the outer mesh is 3.1692 lGI for vertex number 19301 of the outer mesh is 3.4687 lGI for vertex number 19401 of the outer mesh is 3.5259 lGI for vertex number 19501 of the outer mesh is 2.4808 lGI for vertex number 19601 of the outer mesh is 2.7119 lGI for vertex number 19701 of the outer mesh is 3.7435 lGI for vertex number 19801 of the outer mesh is 4.2589 lGI for vertex number 19901 of the outer mesh is 2.8178 lGI for vertex number 20001 of the outer mesh is 2.8113 ratio saved at 20001 lGI for vertex number 20101 of the outer mesh is 2.6515 lGI for vertex number 20201 of the outer mesh is 3.9213 lGI for vertex number 20301 of the outer mesh is 2.8529 lGI for vertex number 20401 of the outer mesh is 3.0731 lGI for vertex number 20501 of the outer mesh is 4.0907 lGI for vertex number 20601 of the outer mesh is 2.7295 lGI for vertex number 20701 of the outer mesh is 3.1116 lGI for vertex number 20801 of the outer mesh is 2.6864 lGI for vertex number 20901 of the outer mesh is 4.3127 lGI for vertex number 21001 of the outer mesh is 3.0542 lGI for vertex number 21101 of the outer mesh is 3.1373 lGI for vertex number 21201 of the outer mesh is 2.8493 lGI for vertex number 21301 of the outer mesh is 2.6606 lGI for vertex number 21401 of the outer mesh is 3.0446 lGI for vertex number 21501 of the outer mesh is 4.5434 lGI for vertex number 21601 of the outer mesh is 2.9931 lGI for vertex number 21701 of the outer mesh is 3.1879 lGI for vertex number 21801 of the outer mesh is 4.1182 lGI for vertex number 21901 of the outer mesh is 3.207 lGI for vertex number 22001 of the outer mesh is 2.7172 lGI for vertex number 22101 of the outer mesh is 2.6356 lGI for vertex number 22201 of the outer mesh is 3.9997 lGI for vertex number 22301 of the outer mesh is 3.4539 lGI for vertex number 22401 of the outer mesh is 3.0055 lGI for vertex number 22501 of the outer mesh is 3.2951 lGI for vertex number 22601 of the outer mesh is 4.4925 lGI for vertex number 22701 of the outer mesh is 4.6059 lGI for vertex number 22801 of the outer mesh is 3.0911 lGI for vertex number 22901 of the outer mesh is 3.08 lGI for vertex number 23001 of the outer mesh is 4.1108 lGI for vertex number 23101 of the outer mesh is 3.6654 lGI for vertex number 23201 of the outer mesh is 2.7616 lGI for vertex number 23301 of the outer mesh is 3.9499 lGI for vertex number 23401 of the outer mesh is 4.0514 lGI for vertex number 23501 of the outer mesh is 3.0168 lGI for vertex number 23601 of the outer mesh is 3.1956 lGI for vertex number 23701 of the outer mesh is 3.1785 lGI for vertex number 23801 of the outer mesh is 3.7275 lGI for vertex number 23901 of the outer mesh is 4.3436 lGI for vertex number 24001 of the outer mesh is 2.747 lGI for vertex number 24101 of the outer mesh is 3.5393 lGI for vertex number 24201 of the outer mesh is 2.9652 lGI for vertex number 24301 of the outer mesh is 3.693 lGI for vertex number 24401 of the outer mesh is 2.8044 lGI for vertex number 24501 of the outer mesh is 2.7217 lGI for vertex number 24601 of the outer mesh is 4.268 lGI for vertex number 24701 of the outer mesh is 3.742 lGI for vertex number 24801 of the outer mesh is 2.7488 lGI for vertex number 24901 of the outer mesh is 2.6629 lGI for vertex number 25001 of the outer mesh is 4.3692 lGI for vertex number 25101 of the outer mesh is 3.8378 lGI for vertex number 25201 of the outer mesh is 2.3481 lGI for vertex number 25301 of the outer mesh is 2.8605 lGI for vertex number 25401 of the outer mesh is 4.3771 lGI for vertex number 25501 of the outer mesh is 3.9661 lGI for vertex number 25601 of the outer mesh is 2.1344 lGI for vertex number 25701 of the outer mesh is 2.6811 lGI for vertex number 25801 of the outer mesh is 4.5833 lGI for vertex number 25901 of the outer mesh is 3.333 lGI for vertex number 26001 of the outer mesh is 2.7177 lGI for vertex number 26101 of the outer mesh is 2.7775 lGI for vertex number 26201 of the outer mesh is 3.5097 lGI for vertex number 26301 of the outer mesh is 4.073 lGI for vertex number 26401 of the outer mesh is 3.7253 lGI for vertex number 26501 of the outer mesh is 3.1731 lGI for vertex number 26601 of the outer mesh is 3.0057 lGI for vertex number 26701 of the outer mesh is 4.4617 lGI for vertex number 26801 of the outer mesh is 4.9911 lGI for vertex number 26901 of the outer mesh is 2.8885 lGI for vertex number 27001 of the outer mesh is 2.8147 lGI for vertex number 27101 of the outer mesh is 3.655 lGI for vertex number 27201 of the outer mesh is 3.2633 lGI for vertex number 27301 of the outer mesh is 5.001 lGI for vertex number 27401 of the outer mesh is 2.8676 lGI for vertex number 27501 of the outer mesh is 2.5777 lGI for vertex number 27601 of the outer mesh is 3.6456 lGI for vertex number 27701 of the outer mesh is 3.8805 lGI for vertex number 27801 of the outer mesh is 4.8259 lGI for vertex number 27901 of the outer mesh is 2.4674 lGI for vertex number 28001 of the outer mesh is 2.7141 lGI for vertex number 28101 of the outer mesh is 3.4802 lGI for vertex number 28201 of the outer mesh is 2.8116 lGI for vertex number 28301 of the outer mesh is 3.9507 lGI for vertex number 28401 of the outer mesh is 2.702 lGI for vertex number 28501 of the outer mesh is 2.5543 lGI for vertex number 28601 of the outer mesh is 4.1929 lGI for vertex number 28701 of the outer mesh is 3.6054 lGI for vertex number 28801 of the outer mesh is 6.1155 lGI for vertex number 28901 of the outer mesh is 2.4344 lGI for vertex number 29001 of the outer mesh is 3.0075 lGI for vertex number 29101 of the outer mesh is 2.5498 lGI for vertex number 29201 of the outer mesh is 4.0105 lGI for vertex number 29301 of the outer mesh is 2.4974 lGI for vertex number 29401 of the outer mesh is 2.5555 lGI for vertex number 29501 of the outer mesh is 3.1673 lGI for vertex number 29601 of the outer mesh is 2.4237 lGI for vertex number 29701 of the outer mesh is 3.9083 lGI for vertex number 29801 of the outer mesh is 2.6248 lGI for vertex number 29901 of the outer mesh is 2.3434 lGI for vertex number 30001 of the outer mesh is 3.8946 ratio saved at 30001 lGI for vertex number 30101 of the outer mesh is 2.686 lGI for vertex number 30201 of the outer mesh is 6.1293 lGI for vertex number 30301 of the outer mesh is 2.4513 lGI for vertex number 30401 of the outer mesh is 2.631 lGI for vertex number 30501 of the outer mesh is 2.474 lGI for vertex number 30601 of the outer mesh is 2.8329 lGI for vertex number 30701 of the outer mesh is 4.7298 lGI for vertex number 30801 of the outer mesh is 2.2406 lGI for vertex number 30901 of the outer mesh is 3.1748 lGI for vertex number 31001 of the outer mesh is 3.8557 lGI for vertex number 31101 of the outer mesh is 2.529 lGI for vertex number 31201 of the outer mesh is 2.0537 lGI for vertex number 31301 of the outer mesh is 2.358 lGI for vertex number 31401 of the outer mesh is 2.7809 lGI for vertex number 31501 of the outer mesh is 2.2796 lGI for vertex number 31601 of the outer mesh is 5.465 lGI for vertex number 31701 of the outer mesh is 2.497 lGI for vertex number 31801 of the outer mesh is 2.8379 lGI for vertex number 31901 of the outer mesh is 3.8669 lGI for vertex number 32001 of the outer mesh is 3.5093 lGI for vertex number 32101 of the outer mesh is 5.7801 lGI for vertex number 32201 of the outer mesh is 2.5544 lGI for vertex number 32301 of the outer mesh is 3.506 lGI for vertex number 32401 of the outer mesh is 3.8328 lGI for vertex number 32501 of the outer mesh is 5.2982 lGI for vertex number 32601 of the outer mesh is 2.4557 lGI for vertex number 32701 of the outer mesh is 2.4414 lGI for vertex number 32801 of the outer mesh is 2.7423 lGI for vertex number 32901 of the outer mesh is 2.2612 lGI for vertex number 33001 of the outer mesh is 2.7483 lGI for vertex number 33101 of the outer mesh is 2.0234 lGI for vertex number 33201 of the outer mesh is 2.5878 lGI for vertex number 33301 of the outer mesh is 3.3914 lGI for vertex number 33401 of the outer mesh is 2.2621 lGI for vertex number 33501 of the outer mesh is 6.6591 lGI for vertex number 33601 of the outer mesh is 1.5499 lGI for vertex number 33701 of the outer mesh is 2.3258 lGI for vertex number 33801 of the outer mesh is 2.9379 lGI for vertex number 33901 of the outer mesh is 4.0418 lGI for vertex number 34001 of the outer mesh is 6.4638 lGI for vertex number 34101 of the outer mesh is 2.5657 lGI for vertex number 34201 of the outer mesh is 2.7792 lGI for vertex number 34301 of the outer mesh is 2.8465 lGI for vertex number 34401 of the outer mesh is 4.2613 lGI for vertex number 34501 of the outer mesh is 4.2087 lGI for vertex number 34601 of the outer mesh is 2.497 lGI for vertex number 34701 of the outer mesh is 2.5423 lGI for vertex number 34801 of the outer mesh is 3.1814 lGI for vertex number 34901 of the outer mesh is 2.7601 lGI for vertex number 35001 of the outer mesh is 6.7647 lGI for vertex number 35101 of the outer mesh is 2.2386 lGI for vertex number 35201 of the outer mesh is 3.1047 lGI for vertex number 35301 of the outer mesh is 3.8528 lGI for vertex number 35401 of the outer mesh is 5.9341 lGI for vertex number 35501 of the outer mesh is 2.4845 lGI for vertex number 35601 of the outer mesh is 2.7201 lGI for vertex number 35701 of the outer mesh is 2.0643 lGI for vertex number 35801 of the outer mesh is 2.6096 lGI for vertex number 35901 of the outer mesh is 6.6884 lGI for vertex number 36001 of the outer mesh is 2.3347 lGI for vertex number 36101 of the outer mesh is 2.7692 lGI for vertex number 36201 of the outer mesh is 2.1443 lGI for vertex number 36301 of the outer mesh is 5.5047 lGI for vertex number 36401 of the outer mesh is 1.9534 lGI for vertex number 36501 of the outer mesh is 2.8102 lGI for vertex number 36601 of the outer mesh is 3.22 lGI for vertex number 36701 of the outer mesh is 2.701 lGI for vertex number 36801 of the outer mesh is 6.891 lGI for vertex number 36901 of the outer mesh is 2.6653 lGI for vertex number 37001 of the outer mesh is 2.9175 lGI for vertex number 37101 of the outer mesh is 3.2532 lGI for vertex number 37201 of the outer mesh is 4.6285 lGI for vertex number 37301 of the outer mesh is 7.5808 lGI for vertex number 37401 of the outer mesh is 2.2921 lGI for vertex number 37501 of the outer mesh is 2.5127 lGI for vertex number 37601 of the outer mesh is 3.7407 lGI for vertex number 37701 of the outer mesh is 2.5855 lGI for vertex number 37801 of the outer mesh is 2.2962 lGI for vertex number 37901 of the outer mesh is 2.11 lGI for vertex number 38001 of the outer mesh is 2.0127 lGI for vertex number 38101 of the outer mesh is 4.4304 lGI for vertex number 38201 of the outer mesh is 6.9724 lGI for vertex number 38301 of the outer mesh is 2.104 lGI for vertex number 38401 of the outer mesh is 2.6629 lGI for vertex number 38501 of the outer mesh is 3.652 lGI for vertex number 38601 of the outer mesh is 2.5346 lGI for vertex number 38701 of the outer mesh is 6.1588 lGI for vertex number 38801 of the outer mesh is 2.2537 lGI for vertex number 38901 of the outer mesh is 2.8822 lGI for vertex number 39001 of the outer mesh is 2.2264 lGI for vertex number 39101 of the outer mesh is 5.7077 lGI for vertex number 39201 of the outer mesh is 2.0975 lGI for vertex number 39301 of the outer mesh is 2.1402 lGI for vertex number 39401 of the outer mesh is 1.9806 lGI for vertex number 39501 of the outer mesh is 4.4778 lGI for vertex number 39601 of the outer mesh is 5.3002 lGI for vertex number 39701 of the outer mesh is 2.1831 lGI for vertex number 39801 of the outer mesh is 2.5883 lGI for vertex number 39901 of the outer mesh is 2.2184 lGI for vertex number 40001 of the outer mesh is 4.257 ratio saved at 40001 lGI for vertex number 40101 of the outer mesh is 5.6302 lGI for vertex number 40201 of the outer mesh is 2.3795 lGI for vertex number 40301 of the outer mesh is 2.7699 lGI for vertex number 40401 of the outer mesh is 3.5948 lGI for vertex number 40501 of the outer mesh is 4.0344 lGI for vertex number 40601 of the outer mesh is 6.6127 lGI for vertex number 40701 of the outer mesh is 2.4212 lGI for vertex number 40801 of the outer mesh is 2.4351 lGI for vertex number 40901 of the outer mesh is 2.1208 lGI for vertex number 41001 of the outer mesh is 3.7895 lGI for vertex number 41101 of the outer mesh is 1.5723 lGI for vertex number 41201 of the outer mesh is 2.3445 lGI for vertex number 41301 of the outer mesh is 2.6898 lGI for vertex number 41401 of the outer mesh is 2.0441 lGI for vertex number 41501 of the outer mesh is 5.9631 lGI for vertex number 41601 of the outer mesh is 1.7826 lGI for vertex number 41701 of the outer mesh is 2.5769 lGI for vertex number 41801 of the outer mesh is 2.6874 lGI for vertex number 41901 of the outer mesh is 2.3396 lGI for vertex number 42001 of the outer mesh is 5.8135 lGI for vertex number 42101 of the outer mesh is 1.6829 lGI for vertex number 42201 of the outer mesh is 2.6686 lGI for vertex number 42301 of the outer mesh is 2.188 lGI for vertex number 42401 of the outer mesh is 2.5359 lGI for vertex number 42501 of the outer mesh is 5.9059 lGI for vertex number 42601 of the outer mesh is 1.9646 lGI for vertex number 42701 of the outer mesh is 2.792 lGI for vertex number 42801 of the outer mesh is 4.2942 lGI for vertex number 42901 of the outer mesh is 5.9461 lGI for vertex number 43001 of the outer mesh is 2.2533 lGI for vertex number 43101 of the outer mesh is 2.6822 lGI for vertex number 43201 of the outer mesh is 2.3134 lGI for vertex number 43301 of the outer mesh is 2.5669 lGI for vertex number 43401 of the outer mesh is 6.3317 lGI for vertex number 43501 of the outer mesh is 1.9501 lGI for vertex number 43601 of the outer mesh is 2.7644 lGI for vertex number 43701 of the outer mesh is 2.3761 lGI for vertex number 43801 of the outer mesh is 4.1205 lGI for vertex number 43901 of the outer mesh is 6.2949 lGI for vertex number 44001 of the outer mesh is 2.0764 lGI for vertex number 44101 of the outer mesh is 2.3304 lGI for vertex number 44201 of the outer mesh is 3.781 lGI for vertex number 44301 of the outer mesh is 3.8041 lGI for vertex number 44401 of the outer mesh is 1.8236 lGI for vertex number 44501 of the outer mesh is 2.7314 lGI for vertex number 44601 of the outer mesh is 2.9926 lGI for vertex number 44701 of the outer mesh is 3.448 lGI for vertex number 44801 of the outer mesh is 6.252 lGI for vertex number 44901 of the outer mesh is 2.0596 lGI for vertex number 45001 of the outer mesh is 2.5945 lGI for vertex number 45101 of the outer mesh is 2.2542 lGI for vertex number 45201 of the outer mesh is 5.8044 lGI for vertex number 45301 of the outer mesh is 2.1138 lGI for vertex number 45401 of the outer mesh is 2.52 lGI for vertex number 45501 of the outer mesh is 2.9549 lGI for vertex number 45601 of the outer mesh is 3.4725 lGI for vertex number 45701 of the outer mesh is 4.9653 lGI for vertex number 45801 of the outer mesh is 2.1274 lGI for vertex number 45901 of the outer mesh is 2.5272 lGI for vertex number 46001 of the outer mesh is 2.5807 lGI for vertex number 46101 of the outer mesh is 4.2494 lGI for vertex number 46201 of the outer mesh is 6.1895 lGI for vertex number 46301 of the outer mesh is 2.2202 lGI for vertex number 46401 of the outer mesh is 2.7748 lGI for vertex number 46501 of the outer mesh is 3.3178 lGI for vertex number 46601 of the outer mesh is 5.3665 lGI for vertex number 46701 of the outer mesh is 1.7526 lGI for vertex number 46801 of the outer mesh is 2.4396 lGI for vertex number 46901 of the outer mesh is 3.2882 lGI for vertex number 47001 of the outer mesh is 3.8116 lGI for vertex number 47101 of the outer mesh is 3.8609 lGI for vertex number 47201 of the outer mesh is 2.0566 lGI for vertex number 47301 of the outer mesh is 2.4949 lGI for vertex number 47401 of the outer mesh is 2.7438 lGI for vertex number 47501 of the outer mesh is 5.1627 lGI for vertex number 47601 of the outer mesh is 2.247 lGI for vertex number 47701 of the outer mesh is 2.3393 lGI for vertex number 47801 of the outer mesh is 2.8745 lGI for vertex number 47901 of the outer mesh is 4.0766 lGI for vertex number 48001 of the outer mesh is 5.7329 lGI for vertex number 48101 of the outer mesh is 2.2777 lGI for vertex number 48201 of the outer mesh is 3.0771 lGI for vertex number 48301 of the outer mesh is 4.251 lGI for vertex number 48401 of the outer mesh is 5.3152 lGI for vertex number 48501 of the outer mesh is 2.0908 lGI for vertex number 48601 of the outer mesh is 2.3667 lGI for vertex number 48701 of the outer mesh is 3.5525 lGI for vertex number 48801 of the outer mesh is 5.0897 lGI for vertex number 48901 of the outer mesh is 2.2152 lGI for vertex number 49001 of the outer mesh is 2.4045 lGI for vertex number 49101 of the outer mesh is 2.6747 lGI for vertex number 49201 of the outer mesh is 3.2258 lGI for vertex number 49301 of the outer mesh is 3.9249 lGI for vertex number 49401 of the outer mesh is 2.2217 lGI for vertex number 49501 of the outer mesh is 2.3499 lGI for vertex number 49601 of the outer mesh is 2.8056 lGI for vertex number 49701 of the outer mesh is 3.7452 lGI for vertex number 49801 of the outer mesh is 5.8205 lGI for vertex number 49901 of the outer mesh is 2.5106 lGI for vertex number 50001 of the outer mesh is 2.4459 ratio saved at 50001 lGI for vertex number 50101 of the outer mesh is 3.1434 lGI for vertex number 50201 of the outer mesh is 3.1028 lGI for vertex number 50301 of the outer mesh is 4.0783 lGI for vertex number 50401 of the outer mesh is 2.1597 lGI for vertex number 50501 of the outer mesh is 2.3606 lGI for vertex number 50601 of the outer mesh is 4.1623 lGI for vertex number 50701 of the outer mesh is 2.5496 lGI for vertex number 50801 of the outer mesh is 2.3214 lGI for vertex number 50901 of the outer mesh is 2.9638 lGI for vertex number 51001 of the outer mesh is 4.21 lGI for vertex number 51101 of the outer mesh is 2.288 lGI for vertex number 51201 of the outer mesh is 2.4258 lGI for vertex number 51301 of the outer mesh is 3.1666 lGI for vertex number 51401 of the outer mesh is 4.9128 lGI for vertex number 51501 of the outer mesh is 2.3986 lGI for vertex number 51601 of the outer mesh is 2.7065 lGI for vertex number 51701 of the outer mesh is 4.206 lGI for vertex number 51801 of the outer mesh is 2.3572 lGI for vertex number 51901 of the outer mesh is 2.3954 lGI for vertex number 52001 of the outer mesh is 3.4289 lGI for vertex number 52101 of the outer mesh is 4.3766 lGI for vertex number 52201 of the outer mesh is 2.4814 lGI for vertex number 52301 of the outer mesh is 2.9581 lGI for vertex number 52401 of the outer mesh is 3.6776 lGI for vertex number 52501 of the outer mesh is 2.1981 lGI for vertex number 52601 of the outer mesh is 2.6582 lGI for vertex number 52701 of the outer mesh is 4.09 lGI for vertex number 52801 of the outer mesh is 2.2856 lGI for vertex number 52901 of the outer mesh is 2.4762 lGI for vertex number 53001 of the outer mesh is 3.0719 lGI for vertex number 53101 of the outer mesh is 4.146 lGI for vertex number 53201 of the outer mesh is 2.4204 lGI for vertex number 53301 of the outer mesh is 2.6833 lGI for vertex number 53401 of the outer mesh is 3.4192 lGI for vertex number 53501 of the outer mesh is 2.5572 lGI for vertex number 53601 of the outer mesh is 2.6587 lGI for vertex number 53701 of the outer mesh is 3.7045 lGI for vertex number 53801 of the outer mesh is 2.2404 lGI for vertex number 53901 of the outer mesh is 2.7101 lGI for vertex number 54001 of the outer mesh is 3.2008 lGI for vertex number 54101 of the outer mesh is 4.0813 lGI for vertex number 54201 of the outer mesh is 2.3063 lGI for vertex number 54301 of the outer mesh is 2.668 lGI for vertex number 54401 of the outer mesh is 3.4489 lGI for vertex number 54501 of the outer mesh is 2.311 lGI for vertex number 54601 of the outer mesh is 2.4818 lGI for vertex number 54701 of the outer mesh is 3.6616 lGI for vertex number 54801 of the outer mesh is 3.8669 lGI for vertex number 54901 of the outer mesh is 2.7489 lGI for vertex number 55001 of the outer mesh is 3.9136 lGI for vertex number 55101 of the outer mesh is 2.3999 lGI for vertex number 55201 of the outer mesh is 2.3149 lGI for vertex number 55301 of the outer mesh is 3.0648 lGI for vertex number 55401 of the outer mesh is 3.2775 lGI for vertex number 55501 of the outer mesh is 2.2171 lGI for vertex number 55601 of the outer mesh is 2.5492 lGI for vertex number 55701 of the outer mesh is 3.4247 lGI for vertex number 55801 of the outer mesh is 2.3905 lGI for vertex number 55901 of the outer mesh is 2.5585 lGI for vertex number 56001 of the outer mesh is 3.6779 lGI for vertex number 56101 of the outer mesh is 2.186 lGI for vertex number 56201 of the outer mesh is 2.3026 lGI for vertex number 56301 of the outer mesh is 3.2177 lGI for vertex number 56401 of the outer mesh is 3.3695 lGI for vertex number 56501 of the outer mesh is 2.2646 lGI for vertex number 56601 of the outer mesh is 2.6527 lGI for vertex number 56701 of the outer mesh is 3.0358 lGI for vertex number 56801 of the outer mesh is 2.2412 lGI for vertex number 56901 of the outer mesh is 2.8139 lGI for vertex number 57001 of the outer mesh is 3.015 lGI for vertex number 57101 of the outer mesh is 2.425 lGI for vertex number 57201 of the outer mesh is 2.7693 lGI for vertex number 57301 of the outer mesh is 3.425 lGI for vertex number 57401 of the outer mesh is 2.3823 lGI for vertex number 57501 of the outer mesh is 2.9933 lGI for vertex number 57601 of the outer mesh is 2.829 lGI for vertex number 57701 of the outer mesh is 2.2503 lGI for vertex number 57801 of the outer mesh is 2.844 lGI for vertex number 57901 of the outer mesh is 3.0557 lGI for vertex number 58001 of the outer mesh is 2.2115 lGI for vertex number 58101 of the outer mesh is 3.061 lGI for vertex number 58201 of the outer mesh is 2.0049 lGI for vertex number 58301 of the outer mesh is 2.3281 lGI for vertex number 58401 of the outer mesh is 2.8977 lGI for vertex number 58501 of the outer mesh is 2.9973 lGI for vertex number 58601 of the outer mesh is 2.1371 lGI for vertex number 58701 of the outer mesh is 3.0553 lGI for vertex number 58801 of the outer mesh is 2.9024 lGI for vertex number 58901 of the outer mesh is 2.226 lGI for vertex number 59001 of the outer mesh is 2.9571 lGI for vertex number 59101 of the outer mesh is 2.2715 lGI for vertex number 59201 of the outer mesh is 2.7231 lGI for vertex number 59301 of the outer mesh is 3.0182 lGI for vertex number 59401 of the outer mesh is 2.1263 lGI for vertex number 59501 of the outer mesh is 2.9062 lGI for vertex number 59601 of the outer mesh is 2.1861 lGI for vertex number 59701 of the outer mesh is 2.6263 lGI for vertex number 59801 of the outer mesh is 2.9608 lGI for vertex number 59901 of the outer mesh is 2.2591 lGI for vertex number 60001 of the outer mesh is 2.557 ratio saved at 60001 lGI for vertex number 60101 of the outer mesh is 2.4018 lGI for vertex number 60201 of the outer mesh is 2.9678 lGI for vertex number 60301 of the outer mesh is 2.2097 lGI for vertex number 60401 of the outer mesh is 2.9131 lGI for vertex number 60501 of the outer mesh is 2.3052 lGI for vertex number 60601 of the outer mesh is 2.291 lGI for vertex number 60701 of the outer mesh is 2.8438 lGI for vertex number 60801 of the outer mesh is 2.103 lGI for vertex number 60901 of the outer mesh is 2.8224 lGI for vertex number 61001 of the outer mesh is 2.8319 lGI for vertex number 61101 of the outer mesh is 2.55 lGI for vertex number 61201 of the outer mesh is 2.9349 lGI for vertex number 61301 of the outer mesh is 2.3408 lGI for vertex number 61401 of the outer mesh is 2.4839 lGI for vertex number 61501 of the outer mesh is 2.5044 lGI for vertex number 61601 of the outer mesh is 2.5331 lGI for vertex number 61701 of the outer mesh is 2.4048 lGI for vertex number 61801 of the outer mesh is 2.4692 lGI for vertex number 61901 of the outer mesh is 2.7892 .. Almost finished .. now back-propagating values on the folded mesh .. average_lGI_over_the_hemisphere = 3.5344 DONE. deltaT = 467.4500 ================= mris_convert -c /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc lh.pial lh.pial_lgi ================= mris_convert -c /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc lh.pial lh.pial_lgi Reading in lh.pial ================= rm -Rf /scratch/juno/dal247378/batches/batch_001/sub-04P0G6LK_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= done. Start: Tue Apr 21 13:10:05 CDT 2026 End: Tue Apr 21 14:00:34 CDT 2026