Wed Oct 22 09:54:12 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 /usr/local/freesurfer/8.0.0/bin/recon-all -subjid sub-01EN91PG_ses-00A -i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/sub-01EN91PG/ses-00A/anat/sub-01EN91PG_ses-00A_run-01_T1w.nii.gz -all subjid sub-01EN91PG_ses-00A setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Actual FREESURFER_HOME /usr/local/freesurfer/8.0.0 build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65995764 kbytes maxproc 2061834 maxlocks unlimited maxsignal 2061834 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 503Gi 3.9Gi 410Gi 61Mi 88Gi 495Gi Swap: 1.9Gi 0B 1.9Gi ######################################## program versions used 8.0.0 (freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a) 8.0.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 8.0.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 8.0.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 mris_convert -all-info ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 8.0.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2025/10/22-14:54:12-GMT BuildTime: Feb 4 2025 01:21:05 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a User: kate Machine: bbs96787.local Platform: Linux PlatformVersion: 6.8.0-85-generic CompilerName: GCC CompilerVersion: 8.4.0 ####################################### GCADIR /usr/local/freesurfer/8.0.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/freesurfer/8.0.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/sub-01EN91PG/ses-00A/anat/sub-01EN91PG_ses-00A_run-01_T1w.nii.gz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig/001.mgz mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/sub-01EN91PG/ses-00A/anat/sub-01EN91PG_ses-00A_run-01_T1w.nii.gz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig/001.mgz INFO: using NIfTI-1 sform (sform_code=1) reading from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/sub-01EN91PG/ses-00A/anat/sub-01EN91PG_ses-00A_run-01_T1w.nii.gz... TR=6.66, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig/001.mgz... @#@FSTIME 2025:10:22:09:54:12 mri_convert N 2 e 1.62 S 0.04 U 1.38 P 87% M 65536 F 0 R 14878 W 0 c 2 w 6 I 12336 O 16592 L 2.62 1.29 2.83 @#@FSLOADPOST 2025:10:22:09:54:14 mri_convert N 2 2.62 1.29 2.83 #-------------------------------------------- #@# MotionCor Wed Oct 22 09:54:14 CDT 2025 Found 1 runs /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig/001.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz mri_info /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz rawavg.mgz ======================================== Volume information for /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz type: MGH intent: MRI (0) dimensions: 225 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: FLOAT (3) fov: 256.000 dof: 1 xstart: -112.5, xend: 112.5 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 6.66 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = 1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 4.7471 : x_a = 0.0000, y_a = 1.0000, z_a = 0.0000, c_a = 15.3190 : x_s = 0.0000, y_s = 0.0000, z_s = 1.0000, c_s = -28.6203 talairach xfm : Orientation : RAS Primary Slice Direction: axial voxel to ras transform: 1.0000 0.0000 0.0000 -107.7529 0.0000 1.0000 0.0000 -112.6810 0.0000 0.0000 1.0000 -156.6203 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant 1 ras to voxel transform: 1.0000 0.0000 0.0000 107.7529 0.0000 1.0000 0.0000 112.6810 0.0000 0.0000 1.0000 156.6203 0.0000 0.0000 0.0000 1.0000 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz --conform mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz --conform reading from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz... TR=6.66, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) volume geometry: valid : -1195264960 extent : (256, 256, 256) voxel : ( 1.0000, 1.0000, 1.0000) x_(ras) : (-1.0000, 0.0000, 0.0000) y_(ras) : ( 0.0000, 0.0000, -1.0000) z_(ras) : ( 0.0000, 1.0000, 0.0000) c_(ras) : ( 4.7471, 15.3190, -28.6203) shears : ( 0.0000, 0.0000, 0.0000) file : /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram 0 200486 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz... @#@FSTIME 2025:10:22:09:54:18 mri_convert N 3 e 1.89 S 0.05 U 1.83 P 99% M 79360 F 0 R 26805 W 0 c 3 w 1 I 0 O 7624 L 2.41 1.27 2.81 @#@FSLOADPOST 2025:10:22:09:54:20 mri_convert N 3 2.41 1.27 2.81 mri_add_xform_to_header -c /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/talairach.xfm /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2025:10:22:09:54:20 mri_add_xform_to_header N 4 e 0.37 S 0.01 U 0.31 P 88% M 23040 F 0 R 4566 W 0 c 2 w 4 I 0 O 7624 L 2.41 1.27 2.81 @#@FSLOADPOST 2025:10:22:09:54:20 mri_add_xform_to_header N 4 2.41 1.27 2.81 mri_info /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz orig.mgz ======================================== Volume information for /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz type: MGH intent: MRI (0) dimensions: 256 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: UCHAR (0) fov: 256.000 dof: 1 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 6.66 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 4.7471 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = 15.3190 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -28.6203 talairach xfm : /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal voxel to ras transform: -1.0000 0.0000 0.0000 132.7471 0.0000 0.0000 1.0000 -112.6810 0.0000 -1.0000 0.0000 99.3797 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant -1 ras to voxel transform: -1.0000 -0.0000 -0.0000 132.7471 -0.0000 -0.0000 -1.0000 99.3797 -0.0000 1.0000 -0.0000 112.6810 -0.0000 -0.0000 -0.0000 1.0000 lta_convert --inlta identity.nofile --src /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz --trg /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz --outlta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg2orig.lta 8.0.0 --inlta: identity.nofile input LTA transform. --src: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz src image (geometry). --trg: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz trg image (geometry). --outlta: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg2orig.lta output LTA. LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg2orig.lta... lta_convert successful. @#@FSTIME 2025:10:22:09:54:20 lta_convert N 8 e 0.18 S 0.00 U 0.17 P 99% M 6144 F 0 R 252 W 0 c 1 w 1 I 0 O 8 L 2.41 1.27 2.81 @#@FSLOADPOST 2025:10:22:09:54:20 lta_convert N 8 2.41 1.27 2.81 mri_synthstrip --threads 1 -i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/synthstrip.mgz Configuring model on the CPU Running SynthStrip model version 1 Input image read from: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz Processing frame (of 1): 1 done Masked image saved to: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/synthstrip.mgz If you use SynthStrip in your analysis, please cite: ---------------------------------------------------- SynthStrip: Skull-Stripping for Any Brain Image A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann NeuroImage 206 (2022), 119474 https://doi.org/10.1016/j.neuroimage.2022.119474 Website: https://synthstrip.io @#@FSTIME 2025:10:22:09:54:20 mri_synthstrip N 6 e 55.52 S 23.43 U 32.34 P 100% M 7773808 F 0 R 8182380 W 0 c 268 w 103 I 0 O 2688 L 2.41 1.27 2.81 @#@FSLOADPOST 2025:10:22:09:55:16 mri_synthstrip N 6 15.77 5.20 4.07 mri_synthseg --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/synthseg.rca.mgz --threads 1 --vol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/synthseg.vol.csv --keepgeom --addctab --cpu SynthSeg 2.0 using CPU, hiding all CUDA_VISIBLE_DEVICES using 1 thread addctab True predicting 1/1 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 437s 437s/step Reslicing to have same geom as the input [1. 1. 1.] segmentation saved in: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/synthseg.rca.mgz volumes saved in: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/synthseg.vol.csv #@# mri_synthseg vmpeak 20415004 If you use this tool in a publication, please cite: SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining B. Billot, D.N. Greve, O. Puonti, A. Thielscher, K. Van Leemput, B. Fischl, A.V. Dalca, J.E. Iglesias Medical Image Analysis, 2023. @#@FSTIME 2025:10:22:09:55:16 mri_synthseg N 11 e 466.60 S 51.85 U 415.18 P 100% M 14051972 F 0 R 20279545 W 0 c 795 w 1638 I 0 O 2760 L 15.77 5.20 4.07 @#@FSLOADPOST 2025:10:22:10:03:03 mri_synthseg N 11 24.22 20.30 12.09 Wed Oct 22 10:03:03 CDT 2025 setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A /usr/local/freesurfer/8.0.0/bin/fs-synthmorph-reg --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/synthstrip.mgz --t /usr/local/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --affine-only --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305 --threads 1 -rwxr-xr-x 1 root root 30890 Feb 3 2025 /usr/local/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a $Id$ Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux pid 29696 Wed Oct 22 10:03:03 CDT 2025 mri_synthmorph -m affine -t /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305/aff.lta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/synthstrip.mgz /usr/local/freesurfer/8.0.0/average/mni305.cor.stripped.mgz -j 1 #@# mri_synthmorph: affine, threads: 1, VmPeak: 6823344 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io @#@FSTIME 2025:10:22:10:03:03 mri_synthmorph N 8 e 67.50 S 28.12 U 39.37 P 99% M 5453512 F 0 R 9372574 W 0 c 131 w 133 I 0 O 432 L 24.22 20.30 12.09 @#@FSLOADPOST 2025:10:22:10:04:10 mri_synthmorph N 8 24.13 21.04 12.91 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A lta_convert --invert --inlta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305/aff.lta --outlta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta 8.0.0 --invert: will invert transform. --inlta: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305/aff.lta input LTA transform. --outlta: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta output LTA. LTA read, type : 1 1.08164 0.00849 -0.07859 -5.55669; -0.01370 1.06985 0.11468 -25.77936; 0.09467 -0.08870 1.15571 2.69360; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305/reg.targ_to_invol.lta... lta_convert successful. @#@FSTIME 2025:10:22:10:04:10 lta_convert N 5 e 0.00 S 0.00 U 0.00 P 50% M 5632 F 0 R 220 W 0 c 0 w 1 I 0 O 8 L 24.13 21.04 12.91 @#@FSLOADPOST 2025:10:22:10:04:10 lta_convert N 5 24.13 21.04 12.91 To check affine registration tkregisterfv --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/synthstrip.mgz --targ /usr/local/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --reg /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305/aff.lta AffineOnly specified, so exiting now Started at Wed Oct 22 10:03:03 CDT 2025 Ended at Wed Oct 22 10:04:10 CDT 2025 Fs-Synthmorph-Reg-Run-Time-Sec 67 Fs-Synthmorph-Reg-Run-Time-Min 1.12 Fs-Synthmorph-Reg-Run-Time-Hours 0.02 fs-synthmorph-reg Done @#@FSTIME 2025:10:22:10:03:03 fs-synthmorph-reg N 9 e 67.66 S 28.24 U 39.43 P 100% M 5453512 F 0 R 9391229 W 0 c 140 w 428 I 0 O 464 L 24.22 20.30 12.09 @#@FSLOADPOST 2025:10:22:10:04:10 fs-synthmorph-reg N 9 24.13 21.04 12.91 8.0.0 --ltavox2vox: output LTA as VOX_TO_VOX transform. --inlta: synthmorph.mni305/aff.lta input LTA transform. --outlta: talairach.xfm.lta output LTA. LTA read, type : 1 1.08164 0.00849 -0.07859 -5.55669; -0.01370 1.06985 0.11468 -25.77936; 0.09467 -0.08870 1.15571 2.69360; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file talairach.xfm.lta... lta_convert successful. 8.0.0 --inlta: talairach.xfm.lta input LTA transform. --outmni: talairach.xfm output MNI/XFM matrix. LTA read, type : 1 1.08164 0.00849 -0.07859 -5.55669; -0.01370 1.06985 0.11468 -25.77937; 0.09467 -0.08870 1.15571 2.69360; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. fs-synthmorph-reg --s sub-01EN91PG_ses-00A --threads 1 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz --test Wed Oct 22 10:04:10 CDT 2025 setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A /usr/local/freesurfer/8.0.0/bin/fs-synthmorph-reg --s sub-01EN91PG_ses-00A --threads 1 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz --test -rwxr-xr-x 1 root root 30890 Feb 3 2025 /usr/local/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a $Id$ Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux pid 33462 mri_mask -bb 3 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz cropping npad = 3 DoAbs = 0 Computing bounding box, npad = 3, 3, 3, 3, 3, 3 13 0 5 231 256 245 maskval=0, outval=0 Writing masked volume to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz...done. lta_convert --inlta identity.nofile --src /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz --trg /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz --outlta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta 8.0.0 --inlta: identity.nofile input LTA transform. --src: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz src image (geometry). --trg: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz trg image (geometry). --outlta: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta output LTA. LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta... lta_convert successful. Wed Oct 22 10:04:11 CDT 2025 mri_synthmorph -m affine -t /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz /usr/local/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.cropped.nii.gz -j 1 #@# mri_synthmorph: affine, threads: 1, VmPeak: 6725016 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io @#@FSTIME 2025:10:22:10:04:11 mri_synthmorph N 8 e 66.39 S 28.68 U 37.70 P 99% M 5390480 F 0 R 9279264 W 0 c 171 w 124 I 0 O 432 L 24.13 21.04 12.91 @#@FSLOADPOST 2025:10:22:10:05:18 mri_synthmorph N 8 24.37 21.75 13.75 Wed Oct 22 10:05:18 CDT 2025 mri_concatenate_lta -invert1 -invertout /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta invert the first LTA before applying it invert the output LTA Read individual LTAs Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2... Inverting output LTA Writing combined LTA to file /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta... mri_concatenate_lta successful. @#@FSTIME 2025:10:22:10:05:18 mri_concatenate_lta N 5 e 0.00 S 0.00 U 0.00 P 100% M 5120 F 0 R 220 W 0 c 0 w 1 I 0 O 8 L 24.37 21.75 13.75 @#@FSLOADPOST 2025:10:22:10:05:18 mri_concatenate_lta N 5 24.37 21.75 13.75 mri_concatenate_lta -invert2 /usr/local/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/reg.1.0mm.to.1.0mm.cropped.lta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.invol_to_croptarg.lta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert the second LTA before applying it Read individual LTAs Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2... Writing combined LTA to file /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta... mri_concatenate_lta successful. @#@FSTIME 2025:10:22:10:05:18 mri_concatenate_lta N 4 e 0.00 S 0.00 U 0.00 P 50% M 5120 F 0 R 221 W 0 c 0 w 1 I 0 O 8 L 24.37 21.75 13.75 @#@FSLOADPOST 2025:10:22:10:05:18 mri_concatenate_lta N 4 24.37 21.75 13.75 lta_convert --invert --inlta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --outlta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta 8.0.0 --invert: will invert transform. --inlta: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta input LTA transform. --outlta: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta output LTA. LTA read, type : 1 0.88428 0.00493 0.05364 5.53651; 0.01127 0.89486 -0.05542 23.26312; -0.07070 0.07722 0.80439 -0.40363; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta... lta_convert successful. @#@FSTIME 2025:10:22:10:05:18 lta_convert N 5 e 0.00 S 0.00 U 0.00 P 100% M 5632 F 0 R 221 W 0 c 0 w 1 I 0 O 8 L 24.37 21.75 13.75 @#@FSLOADPOST 2025:10:22:10:05:18 lta_convert N 5 24.37 21.75 13.75 lta_convert --inlta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta --outmni /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.xfm 8.0.0 --inlta: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta input LTA transform. --outmni: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.xfm output MNI/XFM matrix. LTA read, type : 1 1.12486 0.00027 -0.07499 -6.26444; -0.00799 1.11089 0.07707 -25.76739; 0.09963 -0.10662 1.22919 2.42478; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. To check affine registration tkregisterfv --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz --targ /usr/local/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz --reg /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.invol_to_targ.lta mri_synthmorph -m deform -t /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz -i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/aff.lta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz /usr/local/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.cropped.nii.gz -j 1 -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz #@# mri_synthmorph: deform, threads: 1, VmPeak: 15601168 Thank you for choosing SynthMorph. Please cite us! SynthMorph: learning contrast-invariant registration without acquired images Hoffmann M, Billot B, Greve DN, Iglesias JE, Fischl B, Dalca AV IEEE Transactions on Medical Imaging, 41 (3), 543-558, 2022 https://doi.org/10.1109/TMI.2021.3116879 Anatomy-specific acquisition-agnostic affine registration learned from fictitious images Hoffmann M, Hoopes A, Fischl B*, Dalca AV* (*equal contribution) SPIE Medical Imaging: Image Processing, 12464, 1246402, 2023 https://doi.org/10.1117/12.2653251 https://synthmorph.io/#papers (PDF) Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Hoffmann M, Hoopes A, Greve DN, Fischl B*, Dalca AV* (*equal contribution) Imaging Neuroscience, 2, 1-33, 2024 https://doi.org/10.1162/imag_a_00197 Website: https://synthmorph.io @#@FSTIME 2025:10:22:10:05:18 mri_synthmorph N 12 e 1024.00 S 109.64 U 914.31 P 99% M 14273676 F 0 R 41099865 W 0 c 1370 w 259 I 0 O 116392 L 24.37 21.75 13.75 @#@FSLOADPOST 2025:10:22:10:22:22 mri_synthmorph N 12 24.34 24.10 20.72 mri_warp_convert --inras /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz --insrcgeom /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz --outm3z /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz --vg-thresh 1e-5 --lta1-inv /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/reg.crop-to-invol.lta --lta2 /usr/local/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/reg.1.0mm.cropped.to.1.0mm.lta 8.0.0 --inras: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/deform.mgz input RAS warp. --insrcgeom: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/invol.crop.nii.gz atlas/source image (used for geometry). --outm3z: /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz output M3Z. Setting vg_isEqual_Threshold to 0.000010 Applying LTAs to the GCAM GCAMwrite(/mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz) [INFO] Warpfield::convert(): converting GCAM ... [INFO] Warpfield::convert(): gcam [193 x 229 x 193] [INFO] Warpfield::convert(): gcam image [256 x 256 x 256] [INFO] Warpfield::convert(): gcam atlas [193 x 229 x 193] [INFO] Warpfield::convert(): total out of range voxel count: 0 [INFO] niiWrite(): MGZ_INTENT_WARPMAP => NIFTI_INTENT_DISPVECT, intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [INFO] niiWrite(): convert displacement from 0 to 3 mri_warp_convert successful. @#@FSTIME 2025:10:22:10:22:22 mri_warp_convert N 12 e 15.81 S 2.02 U 13.79 P 99% M 3406164 F 0 R 867549 W 0 c 24 w 1 I 0 O 89168 L 24.34 24.10 20.72 @#@FSLOADPOST 2025:10:22:10:22:38 mri_warp_convert N 12 24.24 24.09 20.79 mri_ca_register -invert-and-save /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz INFO: using NIfTI-1 sform (sform_code=1) Loading gcam [INFO] niiRead(): intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [DEBUG] Warpfield::read() gcam->status = GCAM_LABELED setting orig areas to linear transform determinant scaled 1.00 Computing inverse of GCAM Filling inverse of GCAM Allocating inv_gcam...(256, 256, 256) Saving inverse to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz GCAMwrite(/mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.inv.nii.gz) [INFO] Warpfield::convert(): converting GCAM ... [INFO] Warpfield::convert(): gcam [256 x 256 x 256] [INFO] Warpfield::convert(): gcam image [193 x 229 x 193] [INFO] Warpfield::convert(): gcam atlas [256 x 256 x 256] [INFO] Warpfield::convert(): total out of range voxel count: 0 [INFO] niiWrite(): MGZ_INTENT_WARPMAP => NIFTI_INTENT_DISPVECT, intent_code = 1006, dimensions = {5, 256, 256, 256, 1, 3, 1, 1} [INFO] niiWrite(): convert displacement from 0 to 3 @#@FSTIME 2025:10:22:10:22:38 mri_ca_register N 3 e 93.01 S 3.86 U 89.09 P 99% M 7132620 F 0 R 1883074 W 0 c 149 w 2 I 0 O 252400 L 24.24 24.09 20.79 @#@FSLOADPOST 2025:10:22:10:24:11 mri_ca_register N 3 24.15 24.12 21.11 mri_vol2vol --regheader --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz --targ /usr/local/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz movvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/synthmorph.out.mgz targvol /usr/local/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz outvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1761305471 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -0.50000; 0.00000 1.00000 0.00000 13.50000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -20.00000; 0.00000 1.00000 0.00000 -20.00000; 0.00000 0.00000 1.00000 -2.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done @#@FSTIME 2025:10:22:10:24:11 mri_vol2vol N 7 e 0.86 S 0.04 U 0.82 P 99% M 49152 F 0 R 13361 W 0 c 3 w 1 I 0 O 28336 L 24.15 24.12 21.11 @#@FSLOADPOST 2025:10:22:10:24:12 mri_vol2vol N 7 24.15 24.12 21.11 mri_convert -rt nearest /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz -at /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz mri_convert -rt nearest /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz -at /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz INFO: using NIfTI-1 sform (sform_code=1) reading from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz... TR=6.66, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: Reading transformation from file /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz... INFO: Applying transformation from file /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/warp.to.mni152.1.0mm.1.0mm.nii.gz... Applying morph_3d ... [INFO] niiRead(): intent_code = 1006, dimensions = {5, 193, 229, 193, 1, 3, 1, 1} [DEBUG] Warpfield::read() gcam->status = GCAM_LABELED setting orig areas to linear transform determinant scaled 1.00 morphing to atlas with resample type 0 writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz... @#@FSTIME 2025:10:22:10:24:12 mri_convert N 6 e 8.05 S 1.31 U 6.73 P 99% M 2366976 F 0 R 590457 W 0 c 12 w 1 I 0 O 6640 L 24.15 24.12 21.11 @#@FSLOADPOST 2025:10:22:10:24:20 mri_convert N 6 24.28 24.15 21.16 mri_diff --po /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz mri_diff --po /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/tmp/morph.out.nii.gz diffcount 3978896 Volumes differ in pixel data maxdiff 142.77624512 at 122 45 132 0 tkmeditfv -f /usr/local/freesurfer/8.0.0/average/mni_icbm152_nlin_asym_09c/reg-targets/mni152.1.0mm.nii.gz -aux /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/test.nii.gz Started at Wed Oct 22 10:04:10 CDT 2025 Ended at Wed Oct 22 10:24:20 CDT 2025 Fs-Synthmorph-Reg-Run-Time-Sec 1210 Fs-Synthmorph-Reg-Run-Time-Min 20.17 Fs-Synthmorph-Reg-Run-Time-Hours 0.34 fs-synthmorph-reg Done @#@FSTIME 2025:10:22:10:04:10 fs-synthmorph-reg N 7 e 1209.61 S 145.94 U 1063.61 P 99% M 14273676 F 0 R 53806974 W 0 c 1777 w 1038 I 0 O 501080 L 24.13 21.04 12.91 @#@FSLOADPOST 2025:10:22:10:24:20 fs-synthmorph-reg N 7 24.28 24.15 21.16 #-------------------------------------------- #@# Nu Intensity Correction Wed Oct 22 10:24:20 CDT 2025 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /usr/local/freesurfer/8.0.0/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 8.0.0 Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux Wed Oct 22 10:24:20 CDT 2025 tmpdir is ./tmp.mri_nu_correct.mni.42024 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.42024/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_binarize --i ./tmp.mri_nu_correct.mni.42024/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.42024/ones.mgz 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.42024/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.42024/ones.mgz sysname Linux hostname bbs96787.local machine x86_64 user kate input ./tmp.mri_nu_correct.mni.42024/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.42024/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777216 voxels in final mask Writing output to ./tmp.mri_nu_correct.mni.42024/ones.mgz Count: 16777216 16777216.000000 16777216 100.000000 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.42024/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.42024/sum.junk --avgwf ./tmp.mri_nu_correct.mni.42024/input.mean.dat 8.0.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.42024/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.42024/sum.junk --avgwf ./tmp.mri_nu_correct.mni.42024/input.mean.dat sysname Linux hostname bbs96787.local machine x86_64 user kate whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.42024/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.42024/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.42024/ones.mgz --i ./tmp.mri_nu_correct.mni.42024/nu0.mgz --sum ./tmp.mri_nu_correct.mni.42024/sum.junk --avgwf ./tmp.mri_nu_correct.mni.42024/output.mean.dat 8.0.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.42024/ones.mgz --i ./tmp.mri_nu_correct.mni.42024/nu0.mgz --sum ./tmp.mri_nu_correct.mni.42024/sum.junk --avgwf ./tmp.mri_nu_correct.mni.42024/output.mean.dat sysname Linux hostname bbs96787.local machine x86_64 user kate whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.42024/ones.mgz Loading ./tmp.mri_nu_correct.mni.42024/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.42024/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.42024/nu0.mgz ./tmp.mri_nu_correct.mni.42024/nu0.mgz mul 1.20306169676378108344 Packing Done packing Unpacking Saving result to './tmp.mri_nu_correct.mni.42024/nu0.mgz' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 213976 mri_convert ./tmp.mri_nu_correct.mni.42024/nu0.mgz nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.42024/nu0.mgz nu.mgz --like orig.mgz reading from ./tmp.mri_nu_correct.mni.42024/nu0.mgz... TR=6.66, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 3 seconds. FIRST_PERCENTILE 0.010000 WM_PERCENTILE 0.900000 MAX_R 50.000000 i1 = 2, i2 = 58 #mri_make_uchar# mapping 5 149 to 3 110 : b -1.2875 m 0.744926 : thresh 1.72836 maxsat 344.044 : nzero 12646203 nsat 0 Wed Oct 22 10:26:52 CDT 2025 mri_nu_correct.mni done @#@FSTIME 2025:10:22:10:24:20 mri_nu_correct.mni N 9 e 152.43 S 1.09 U 151.35 P 100% M 613888 F 0 R 520891 W 0 c 146 w 162 I 0 O 36896 L 24.28 24.15 21.16 @#@FSLOADPOST 2025:10:22:10:26:52 mri_nu_correct.mni N 9 24.04 24.10 21.61 mri_add_xform_to_header -c /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz @#@FSTIME 2025:10:22:10:26:52 mri_add_xform_to_header N 4 e 0.36 S 0.01 U 0.30 P 88% M 23040 F 0 R 4569 W 0 c 4 w 3 I 0 O 6616 L 24.04 24.10 21.61 @#@FSLOADPOST 2025:10:22:10:26:53 mri_add_xform_to_header N 4 24.04 24.10 21.61 #-------------------------------------------- #@# Intensity Normalization Wed Oct 22 10:26:53 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 1.08164 0.00849 -0.07859 -5.55669; -0.01370 1.06985 0.11468 -25.77937; 0.09467 -0.08870 1.15571 2.69360; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 16 Starting OpenSpline(): npoints = 16 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 61 (61), valley at 37 (37) csf peak at 31, setting threshold to 51 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 61 (61), valley at 29 (29) csf peak at 31, setting threshold to 51 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 1 minutes and 15 seconds. @#@FSTIME 2025:10:22:10:26:53 mri_normalize N 7 e 75.34 S 0.52 U 74.80 P 99% M 583460 F 0 R 263425 W 0 c 117 w 1 I 0 O 6384 L 24.04 24.10 21.61 @#@FSLOADPOST 2025:10:22:10:28:08 mri_normalize N 7 24.09 24.11 21.81 #-------------------------------------- #@# MCADura Segmentation Wed Oct 22 10:28:08 CDT 2025 mri_mcadura_seg --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/mca-dura.mgz --threads 1 --synthmorphdir /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm Wed Oct 22 10:28:08 CDT 2025 setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /usr/local/freesurfer/8.0.0/bin/mri_mcadura_seg --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/mca-dura.mgz --threads 1 --synthmorphdir /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm -rwxr-xr-x 1 root root 13384 Feb 3 2025 /usr/local/freesurfer/8.0.0/bin/mri_mcadura_seg freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a $Id$ Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux pid 48222 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_vol2vol --reg /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --mov /usr/local/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.lh.nii.gz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/mcadura.prior.lh.nii.gz regio_read_register: loading lta Matrix from regfile: -1.12486 -0.00027 0.07499 -0.72589; 0.09963 -0.10662 1.22919 -52.41548; 0.00799 -1.11089 -0.07707 -6.50671; 0.00000 0.00000 0.00000 1.00000; Getting target volume geom from lta destination movvol /usr/local/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.lh.nii.gz outvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/mcadura.prior.lh.nii.gz regfile /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1761922021 Final tkRAS-to-tkRAS Matrix is: -1.12486 -0.00027 0.07499 -0.72589; 0.09963 -0.10662 1.22919 -52.41548; 0.00799 -1.11089 -0.07707 -6.50671; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.12486 0.07499 0.00027 231.57443; 0.00799 -0.07707 1.11089 -12.34543; -0.09963 -1.22919 -0.10662 227.82108; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop-to-fov-mm 80 80 80 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/mcadura.prior.lh.nii.gz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/lh.crop.nii.gz CropToFoVmm 80 80 80 DoAbs = 0 Found 5656 voxels in mask (pct= 0.03) MRIcropToFoV(): thresh=0.001 FoV = (80,80,80) nhits=5656 centroid = (163.793,112.771,157.184) min = (137,90,140) max = (182,131,173) delta = (46,42,34) Region 124 73 117 80 80 80 124 73 117 80 80 80 maskval=0, outval=0 Writing masked volume to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/lh.crop.nii.gz...done. mri_vol2vol --regheader --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz --targ /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/lh.crop.nii.gz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.lh.crop.nii.gz movvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz targvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/lh.crop.nii.gz outvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.lh.crop.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1761434551 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -36.00000; 0.00000 1.00000 0.00000 29.00000; 0.00000 0.00000 1.00000 15.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 124.00000; 0.00000 1.00000 0.00000 73.00000; 0.00000 0.00000 1.00000 117.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_sclimbic_seg --model /usr/local/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.lh.crop.nii.gz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.lh.mgz /usr/local/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /usr/local/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.lh.crop.nii.gz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.lh.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/dumca.lh.ctab Loaded population stats /usr/local/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 2 inshape (72, 72, 72) features 24 (None, 72, 72, 72, 1) Loading weights from /usr/local/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /usr/local/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 Segmenting image 1/1 Loaded input image from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.lh.crop.nii.gz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 2s 2s/step Wrote segmentation to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.lh.mgz vmpcma: 6984740 done mri_vol2vol --regheader --interp nearest --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.lh.mgz --targ /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.lh.uncropped.mgz movvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.lh.mgz targvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz outvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.lh.uncropped.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1761737959 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 36.00000; 0.00000 1.00000 0.00000 -29.00000; 0.00000 0.00000 1.00000 -15.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -124.00000; 0.00000 1.00000 0.00000 -73.00000; 0.00000 0.00000 1.00000 -117.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --reg /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --mov /usr/local/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.rh.nii.gz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/mcadura.prior.rh.nii.gz regio_read_register: loading lta Matrix from regfile: -1.12486 -0.00027 0.07499 -0.72589; 0.09963 -0.10662 1.22919 -52.41548; 0.00799 -1.11089 -0.07707 -6.50671; 0.00000 0.00000 0.00000 1.00000; Getting target volume geom from lta destination movvol /usr/local/freesurfer/8.0.0/average/mca-dura.prior.warp.mni152.1.0mm.rh.nii.gz outvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/mcadura.prior.rh.nii.gz regfile /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1761372831 Final tkRAS-to-tkRAS Matrix is: -1.12486 -0.00027 0.07499 -0.72589; 0.09963 -0.10662 1.22919 -52.41548; 0.00799 -1.11089 -0.07707 -6.50671; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.12486 0.07499 0.00027 231.57443; 0.00799 -0.07707 1.11089 -12.34543; -0.09963 -1.22919 -0.10662 227.82108; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop-to-fov-mm 80 80 80 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/mcadura.prior.rh.nii.gz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/rh.crop.nii.gz CropToFoVmm 80 80 80 DoAbs = 0 Found 5969 voxels in mask (pct= 0.04) MRIcropToFoV(): thresh=0.001 FoV = (80,80,80) nhits=5969 centroid = (94.3119,118.432,159.124) min = (73,98,143) max = (119,134,177) delta = (47,37,35) Region 54 78 119 80 80 80 54 78 119 80 80 80 maskval=0, outval=0 Writing masked volume to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/rh.crop.nii.gz...done. mri_vol2vol --regheader --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz --targ /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/rh.crop.nii.gz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.rh.crop.nii.gz movvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz targvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/rh.crop.nii.gz outvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.rh.crop.nii.gz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1761966297 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 34.00000; 0.00000 1.00000 0.00000 31.00000; 0.00000 0.00000 1.00000 10.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 54.00000; 0.00000 1.00000 0.00000 78.00000; 0.00000 0.00000 1.00000 119.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.rh.crop.nii.gz --left-right-reverse-pix /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.rh.crop.lrrev.nii.gz mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.rh.crop.nii.gz --left-right-reverse-pix /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.rh.crop.lrrev.nii.gz reading from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.rh.crop.nii.gz... WARNING: applying left-right reversal to the input pixels without changing geometry. This will likely make the volume geometry WRONG, so make sure you know what you are doing. Reversing pixels for the columns TR=6.66, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.rh.crop.lrrev.nii.gz... mri_sclimbic_seg --model /usr/local/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.rh.crop.lrrev.nii.gz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.lrrev.mgz /usr/local/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /usr/local/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 --ctab /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/dumca.lh.ctab --keep_ac --percentile 99.9 --vmp --output-base mcadura --conform --logfile mri_mcadura_seg.log --no-cite-sclimbic --threads 1 --fov 72 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.rh.crop.lrrev.nii.gz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.lrrev.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/dumca.lh.ctab Loaded population stats /usr/local/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 2 inshape (72, 72, 72) features 24 (None, 72, 72, 72, 1) Loading weights from /usr/local/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /usr/local/freesurfer/8.0.0/models/mca-dura.both-lh.nstd21.fhs.h5 Segmenting image 1/1 Loaded input image from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/invol.rh.crop.lrrev.nii.gz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 2s 2s/step Wrote segmentation to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.lrrev.mgz vmpcma: 6984904 done mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.lrrev.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.mgz --left-right-swap-label-table /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/dumca.lh.index /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/dumca.rh.index --left-right-reverse-pix mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.lrrev.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.mgz --left-right-swap-label-table /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/dumca.lh.index /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/dumca.rh.index --left-right-reverse-pix reading from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.lrrev.mgz... Performing left-right swap of labels MRIlrswapSeg(): nswaps 433 WARNING: applying left-right reversal to the input pixels without changing geometry. This will likely make the volume geometry WRONG, so make sure you know what you are doing. Reversing pixels for the columns TR=6.66, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.mgz... mri_vol2vol --regheader --interp nearest --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.mgz --targ /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.uncropped.mgz movvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.mgz targvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz outvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.uncropped.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1761670835 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 -34.00000; 0.00000 1.00000 0.00000 -31.00000; 0.00000 0.00000 1.00000 -10.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -54.00000; 0.00000 1.00000 0.00000 -78.00000; 0.00000 0.00000 1.00000 -119.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_concat /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.lh.uncropped.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.mri_mcadura_seg.48222/seg.rh.uncropped.mgz --sum --ctab /usr/local/freesurfer/8.0.0/models/mca-dura.ctab --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/mca-dura.mgz ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing sum across frames Writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/mca-dura.mgz fsvglrun freeview -neuro-view --hide-3d-slices --view coronal /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/mca-dura.mgz:isosurface=1:outline=1 Started at Wed Oct 22 10:28:08 CDT 2025 Ended at Wed Oct 22 10:28:25 CDT 2025 mri_mcadura_seg-Run-Time-Sec 17 mri_mcadura_seg Done #-------------------------------------- #@# VSinus Segmentation Wed Oct 22 10:28:25 CDT 2025 mri_vsinus_seg --s sub-01EN91PG_ses-00A --rca-synthseg --threads 1 --synthmorphdir /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm Wed Oct 22 10:28:25 CDT 2025 setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /usr/local/freesurfer/8.0.0/bin/mri_vsinus_seg --s sub-01EN91PG_ses-00A --rca-synthseg --threads 1 --synthmorphdir /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm -rwxr-xr-x 1 root root 20960 Feb 3 2025 /usr/local/freesurfer/8.0.0/bin/mri_vsinus_seg freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a $Id$ Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux pid 53809 mri_vol2vol --mov /usr/local/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz --lta /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --targ /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz Matrix from LTA: -1.12486 -0.00027 0.07499 -0.72585; 0.09963 -0.10662 1.22919 -52.41547; 0.00799 -1.11089 -0.07707 -6.50670; 0.00000 0.00000 0.00000 1.00000; /usr/local/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz movvol /usr/local/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz targvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz outvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz regfile /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1762015519 Final tkRAS-to-tkRAS Matrix is: -1.12486 -0.00027 0.07499 -0.72586; 0.09963 -0.10662 1.22919 -52.41548; 0.00799 -1.11089 -0.07707 -6.50671; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.12486 0.07499 0.00027 231.57443; 0.00799 -0.07707 1.11089 -12.34545; -0.09963 -1.22919 -0.10662 227.82114; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop 0 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz threshold mask volume at 0.001 cropping npad = 0 DoAbs = 0 Found 77636 voxels in mask (pct= 0.46) Computing bounding box, npad = 0, 0, 0, 0, 0, 0 68 23 36 122 117 90 maskval=0, outval=0 Writing masked volume to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz...done. mri_binarize --crop-around-ras /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz nolta cras /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz 0 144 144 144 Getting cras from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz final ras2vox matrix -1.00000 -0.00000 -0.00000 132.74709; -0.00000 -0.00000 -1.00000 99.37968; -0.00000 1.00000 -0.00000 112.68102; -0.00000 -0.00000 -0.00000 1.00000; -------------------------- ostr LIA (144 144 144) (144 144 144) rasCenter 3.74709 -31.681 17.8797 crsCenter 129 81.5 81 MRIcropAroundCRS() vol size 256 256 256 center 129 81.5 81 fov 144 144 144 limits 58 201 11 154 10 153 using MRIextractRegion() mri_sclimbic_seg --model /usr/local/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 --ctab /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab --keep_ac --conform --percentile 99.9 --vmp --output-base vsinus --logfile mri_vsinus_seg.log --fov 144 --threads 1 --no-cite-sclimbic --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz /usr/local/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /usr/local/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 --ctab /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab --keep_ac --conform --percentile 99.9 --vmp --output-base vsinus --logfile mri_vsinus_seg.log --fov 144 --threads 1 --no-cite-sclimbic --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab Loaded population stats /usr/local/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 6 inshape (144, 144, 144) features 24 (None, 144, 144, 144, 1) Loading weights from /usr/local/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /usr/local/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 Segmenting image 1/1 Loaded input image from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 14s 14s/step Wrote segmentation to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz vmpcma: 8740064 done mri_binarize --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/synthseg.rca.mgz --match 3 42 --inv --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri cmdline mri_binarize --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/synthseg.rca.mgz --match 3 42 --inv --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz sysname Linux hostname bbs96787.local machine x86_64 user kate input /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/synthseg.rca.mgz frame 0 nErode3d 0 nErode2d 0 output /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz Binarizing based on matching values nMatch 2 0 3 1 42 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 575246 values in range Counting number of voxels in first frame Found 575246 voxels in final mask Writing output to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz Count: 575246 575246.000000 16777216 3.428733 mri_binarize done mri_vol2vol --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz --targ /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz --interp nearest --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/vsinus.mgz --regheader movvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz targvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz outvol /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/vsinus.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1761230198 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 2.00000; 0.00000 1.00000 0.00000 46.00000; 0.00000 0.00000 1.00000 -45.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -58.00000; 0.00000 1.00000 0.00000 -11.00000; 0.00000 0.00000 1.00000 -10.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/vsinus.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/vsinus.mgz DoAbs = 0 maskval=0, outval=0 Writing masked volume to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/vsinus.mgz...done. mri_segstats --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz --seg /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/vsinus.mgz --sum /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/vsinus.stats --subject sub-01EN91PG_ses-00A --etiv 8.0.0 cwd cmdline mri_segstats --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz --seg /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/vsinus.mgz --sum /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/vsinus.stats --subject sub-01EN91PG_ses-00A --etiv sysname Linux hostname bbs96787.local machine x86_64 user kate whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/vsinus.mgz Using embedded color table (and excluding seg 0) Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 6 segmentations Computing statistics for each segmentation Reporting on 5 segmentations Using PrintSegStat mri_segstats done fsvglrun freeview --hide-3d-slices --view coronal -neuro-view /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz:lock=1 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/vsinus.mgz:isosurface=1:outline=1 Started at Wed Oct 22 10:28:25 CDT 2025 Ended at Wed Oct 22 10:28:52 CDT 2025 Mri_Vsinus_Seg-Run-Time-Sec 27 Mri_Vsinus_Seg-Run-Time-Min 0.45 Mri_Vsinus_Seg-Run-Time-Hours 0.01 mri_vsinus_seg Done mri_mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/T1.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/synthstrip.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/brainmask.mgz DoAbs = 0 maskval=0, outval=0 Writing masked volume to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/brainmask.mgz...done. #------------------------------------- #@# EM Registration Wed Oct 22 10:28:53 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /usr/local/freesurfer/8.0.0/average/RB_all_2020-01-02.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/usr/local/freesurfer/8.0.0/average/RB_all_2020-01-02.gca'... GCAread took 0 minutes and 1 seconds. average std = 7.2 using min determinant for regularization = 5.2 0 singular and 884 ill-conditioned covariance matrices regularized reading 'nu.mgz'... MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 5.9 or > 519.0 total sample mean = 79.1 (1017 zeros) ************************************************ spacing=8, using 2841 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2841, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=26.0 skull bounding box = (63, 39, 42) --> (192, 151, 205) finding center of left hemi white matter using (106, 76, 124) as brain centroid of Right_Cerebral_White_Matter... MRImask(): AllowDiffGeom = 1 mean wm in atlas = 107, using box (90,62,104) --> (121, 89,144) to find MRI wm before smoothing, mri peak at 113 robust fit to distribution - 109 +- 4.6 after smoothing, mri peak at 109, scaling input intensities by 0.982 scaling channel 0 by 0.981651 initial log_p = -4.535 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.047713 @ (-10.526, 31.579, -10.526) max log p = -3.836673 @ (5.263, -5.263, 5.263) max log p = -3.823966 @ (2.632, 2.632, -2.632) max log p = -3.795022 @ (1.316, -1.316, 1.316) max log p = -3.780970 @ (0.658, 0.658, 1.974) max log p = -3.770721 @ (0.329, -0.329, -3.618) max log p = -3.770721 @ (0.000, 0.000, 0.000) max log p = -3.770721 @ (0.000, 0.000, 0.000) Found translation: (-0.3, 28.0, -8.2): log p = -3.771 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.407, old_max_log_p =-3.771 (thresh=-3.8) 1.06375 0.00000 0.00000 -8.43356; 0.00000 1.15000 0.00000 14.26106; 0.00000 0.00000 1.07500 -16.74704; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 53 seconds. **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.407, old_max_log_p =-3.407 (thresh=-3.4) 1.06375 0.00000 0.00000 -8.43356; 0.00000 1.15000 0.00000 14.26106; 0.00000 0.00000 1.07500 -16.74704; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 iteration took 0 minutes and 51 seconds. **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.231, old_max_log_p =-3.407 (thresh=-3.4) 1.07717 -0.11452 -0.03335 4.22563; 0.10749 1.16516 -0.03699 1.66852; 0.03759 0.03432 1.05371 -25.91680; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 47 seconds. **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.227, old_max_log_p =-3.231 (thresh=-3.2) 1.10040 -0.07775 -0.03404 -2.06758; 0.07336 1.16878 -0.00140 -0.36492; 0.03405 -0.00382 1.05436 -21.99800; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 48 seconds. **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.226, old_max_log_p =-3.227 (thresh=-3.2) 1.10269 -0.04082 0.00154 -10.01548; 0.03837 1.16999 0.03307 1.81777; -0.00430 -0.03876 1.03462 -9.62306; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 iteration took 0 minutes and 47 seconds. **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.211, old_max_log_p =-3.226 (thresh=-3.2) 1.10526 -0.04083 -0.00694 -9.37246; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 44 seconds. **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.211, old_max_log_p =-3.211 (thresh=-3.2) 1.10526 -0.04083 -0.00694 -9.37246; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2841 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.10526 -0.04083 -0.00694 -9.37246; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; nsamples 2841 Quasinewton: input matrix 1.10526 -0.04083 -0.00694 -9.37246; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 009: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.10526 -0.04083 -0.00694 -9.37246; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.211 (old=-4.535) transform before final EM align: 1.10526 -0.04083 -0.00694 -9.37246; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315638 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.10526 -0.04083 -0.00694 -9.37246; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; nsamples 315638 Quasinewton: input matrix 1.10526 -0.04083 -0.00694 -9.37246; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 011: -log(p) = 3.7 tol 0.000000 final transform: 1.10526 -0.04083 -0.00694 -9.37246; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... #VMPC# mri_em_register VmPeak 774164 FSRUNTIME@ mri_em_register 0.1029 hours 1 threads registration took 6 minutes and 10 seconds. @#@FSTIME 2025:10:22:10:28:53 mri_em_register N 7 e 370.50 S 0.59 U 369.90 P 99% M 615896 F 0 R 166650 W 0 c 155 w 1 I 0 O 24 L 24.16 24.12 21.93 @#@FSLOADPOST 2025:10:22:10:35:03 mri_em_register N 7 24.12 24.12 22.67 #-------------------------------------- #@# CA Normalize Wed Oct 22 10:35:03 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /usr/local/freesurfer/8.0.0/average/RB_all_2020-01-02.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/usr/local/freesurfer/8.0.0/average/RB_all_2020-01-02.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=26.0 skull bounding box = (63, 39, 42) --> (192, 151, 205) finding center of left hemi white matter using (106, 76, 124) as brain centroid of Right_Cerebral_White_Matter... mean wm in atlas = 107, using box (90,62,104) --> (121, 89,144) to find MRI wm before smoothing, mri peak at 113 robust fit to distribution - 109 +- 4.6 after smoothing, mri peak at 109, scaling input intensities by 0.982 scaling channel 0 by 0.981651 using 246437 sample points... INFO: compute sample coordinates transform 1.10526 -0.04083 -0.00694 -9.37246; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (126, 36, 40) --> (187, 136, 202) Left_Cerebral_White_Matter: limiting intensities to 97.0 --> 132.0 0 of 4788 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (68, 37, 40) --> (128, 140, 202) Right_Cerebral_White_Matter: limiting intensities to 96.0 --> 132.0 1 of 4771 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (129, 106, 61) --> (173, 145, 113) Left_Cerebellum_White_Matter: limiting intensities to 98.0 --> 132.0 0 of 95 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 106, 59) --> (128, 146, 115) Right_Cerebellum_White_Matter: limiting intensities to 98.0 --> 132.0 0 of 117 (0.0%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (113, 103, 95) --> (144, 161, 125) Brain_Stem: limiting intensities to 104.0 --> 132.0 15 of 33 (45.5%) samples deleted using 9804 total control points for intensity normalization... bias field = 0.990 +- 0.043 155 of 9788 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (126, 36, 40) --> (187, 136, 202) Left_Cerebral_White_Matter: limiting intensities to 93.0 --> 132.0 1 of 4982 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (68, 37, 40) --> (128, 140, 202) Right_Cerebral_White_Matter: limiting intensities to 92.0 --> 132.0 1 of 4998 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (129, 106, 61) --> (173, 145, 113) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 1 of 134 (0.7%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 106, 59) --> (128, 146, 115) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 115 (0.0%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (113, 103, 95) --> (144, 161, 125) Brain_Stem: limiting intensities to 88.0 --> 132.0 8 of 101 (7.9%) samples deleted using 10330 total control points for intensity normalization... bias field = 1.017 +- 0.041 44 of 10203 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (126, 36, 40) --> (187, 136, 202) Left_Cerebral_White_Matter: limiting intensities to 93.0 --> 132.0 6 of 4958 (0.1%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (68, 37, 40) --> (128, 140, 202) Right_Cerebral_White_Matter: limiting intensities to 92.0 --> 132.0 1 of 5000 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (129, 106, 61) --> (173, 145, 113) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 5 of 166 (3.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 106, 59) --> (128, 146, 115) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 16 of 157 (10.2%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (113, 103, 95) --> (144, 161, 125) Brain_Stem: limiting intensities to 88.0 --> 132.0 63 of 197 (32.0%) samples deleted using 10478 total control points for intensity normalization... bias field = 1.014 +- 0.037 28 of 10175 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 0 minutes and 40 seconds. @#@FSTIME 2025:10:22:10:35:03 mri_ca_normalize N 8 e 40.49 S 0.70 U 39.78 P 99% M 694956 F 0 R 408226 W 0 c 92 w 1 I 0 O 3464 L 24.12 24.12 22.67 @#@FSLOADPOST 2025:10:22:10:35:44 mri_ca_normalize N 8 24.32 24.18 22.75 #-------------------------------------- #@# EntoWM Segmentation Wed Oct 22 10:35:44 CDT 2025 mri_entowm_seg --s sub-01EN91PG_ses-00A --conform --threads 1 mri_sclimbic_seg --no-cite-sclimbic --model /usr/local/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 --keep_ac --ctab /usr/local/freesurfer/8.0.0/models/entowm.ctab --percentile 99.9 --vmp --output-base entowm --s sub-01EN91PG_ses-00A --conform --threads 1 /usr/local/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --no-cite-sclimbic --model /usr/local/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 --keep_ac --ctab /usr/local/freesurfer/8.0.0/models/entowm.ctab --percentile 99.9 --vmp --output-base entowm --s sub-01EN91PG_ses-00A --conform --threads 1 Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /usr/local/freesurfer/8.0.0/models/entowm.ctab Loaded population stats /usr/local/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 5 inshape (160, 160, 160) features 24 (None, 160, 160, 160, 1) Loading weights from /usr/local/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /usr/local/freesurfer/8.0.0/models/entowm.fsm31.t1.nstd00-30.nstd21-108.h5 Using subject directory /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 Computed eTIV from talairach Segmenting subject sub-01EN91PG_ses-00A 1/1 Loaded input image from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/nu.mgz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 19s 19s/step Wrote segmentation to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/entowm.mgz Wrote volume stats to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/entowm.stats vmpcma: 9571696 done Started at Wed Oct 22 10:35:44 CDT 2025 Started at Wed Oct 22 10:35:44 CDT 2025 Ended at Wed Oct 22 10:36:06 CDT 2025 Ended at Wed Oct 22 10:36:06 CDT 2025 mri_entowm_seg-Run-Time-Sec 22 mri_entowm_seg-Run-Time-Sec 22 mri_entowm_seg-Run-Time-Min 0.44 mri_entowm_seg-Run-Time-Min 0.44 mri_entowm_seg-Run-Time-Hours 0.01 mri_entowm_seg-Run-Time-Hours 0.01 mri_entowm_seg Done mri_entowm_seg Done 1 3006 736 750.9857 wm-lh-entorhinal 2 3201 184 198.4255 wm-lh-gyrus-ambiens 3 4006 878 923.0496 wm-rh-entorhinal 4 4201 208 223.3063 wm-rh-gyrus-ambiens #-------------------------------------- #@# CC Seg Wed Oct 22 10:36:06 CDT 2025 seg2cc --s sub-01EN91PG_ses-00A Wed Oct 22 10:36:06 CDT 2025 setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /usr/local/freesurfer/8.0.0/bin/seg2cc --s sub-01EN91PG_ses-00A freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a seg2cc 8.0.0 Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri IsConformed yes Wed Oct 22 10:36:07 CDT 2025 mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta transforms/cc_up.lta sub-01EN91PG_ses-00A will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as transforms/cc_up.lta reading aseg from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/aseg.auto_noCCseg.mgz reading norm from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/norm.mgz 47770 voxels in left wm, 40651 in right wm, xrange [122, 132] searching rotation angles z=[-2 12], y=[-7 7] searching scale 1 Z rot -1.8 searching scale 1 Z rot -1.6 searching scale 1 Z rot -1.3 searching scale 1 Z rot -1.1 searching scale 1 Z rot -0.8 searching scale 1 Z rot -0.6 searching scale 1 Z rot -0.3 searching scale 1 Z rot -0.1 searching scale 1 Z rot 0.2 searching scale 1 Z rot 0.4 searching scale 1 Z rot 0.7 searching scale 1 Z rot 0.9 searching scale 1 Z rot 1.2 searching scale 1 Z rot 1.4 searching scale 1 Z rot 1.7 searching scale 1 Z rot 1.9 searching scale 1 Z rot 2.2 searching scale 1 Z rot 2.4 searching scale 1 Z rot 2.7 searching scale 1 Z rot 2.9 searching scale 1 Z rot 3.2 searching scale 1 Z rot 3.4 searching scale 1 Z rot 3.7 searching scale 1 Z rot 3.9 searching scale 1 Z rot 4.2 searching scale 1 Z rot 4.4 searching scale 1 Z rot 4.7 searching scale 1 Z rot 4.9 searching scale 1 Z rot 5.2 searching scale 1 Z rot 5.4 searching scale 1 Z rot 5.7 searching scale 1 Z rot 5.9 searching scale 1 Z rot 6.2 searching scale 1 Z rot 6.4 searching scale 1 Z rot 6.7 searching scale 1 Z rot 6.9 searching scale 1 Z rot 7.2 searching scale 1 Z rot 7.4 searching scale 1 Z rot 7.7 searching scale 1 Z rot 7.9 searching scale 1 Z rot 8.2 searching scale 1 Z rot 8.4 searching scale 1 Z rot 8.7 searching scale 1 Z rot 8.9 searching scale 1 Z rot 9.2 searching scale 1 Z rot 9.4 searching scale 1 Z rot 9.7 searching scale 1 Z rot 9.9 searching scale 1 Z rot 10.2 searching scale 1 Z rot 10.4 searching scale 1 Z rot 10.7 searching scale 1 Z rot 10.9 searching scale 1 Z rot 11.2 searching scale 1 Z rot 11.4 searching scale 1 Z rot 11.7 global minimum found at slice 126.0, rotations (-0.13, 4.91) final transformation (x=126.0, yr=-0.125, zr=4.905): 0.99633 -0.08551 -0.00218 9.48713; 0.08551 0.99634 -0.00019 38.53821; 0.00219 -0.00000 1.00000 3.72493; 0.00000 0.00000 0.00000 1.00000; updating x range to be [125, 129] in xformed coordinates best xformed slice 127 min_x_fornix = 133 WARNING: min_x_fornix not set min_x_fornix = 140 WARNING: min_x_fornix not set min_x_fornix = 133 cc center is found at 127 79 124 eigenvectors: 0.00072 -0.00162 1.00000; 0.07293 -0.99734 -0.00167; 0.99734 0.07293 -0.00060; writing aseg with callosum to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/aseg.auto.mgz... corpus callosum segmentation took 0.3 minutes #VMPC# mri_cc VmPeak 437740 mri_cc done @#@FSTIME 2025:10:22:10:36:07 mri_cc N 7 e 20.13 S 0.40 U 19.72 P 99% M 345224 F 0 R 278278 W 0 c 46 w 1 I 0 O 816 L 24.30 24.19 22.79 @#@FSLOADPOST 2025:10:22:10:36:27 mri_cc N 7 24.35 24.21 22.82 Wed Oct 22 10:36:27 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri Started at Wed Oct 22 10:36:06 CDT 2025 Ended at Wed Oct 22 10:36:27 CDT 2025 Seg2cc-Run-Time-Sec 21 Seg2cc-Run-Time-Hours 0.01 seg2cc Done @#@FSTIME 2025:10:22:10:36:06 seg2cc N 2 e 20.36 S 0.47 U 19.89 P 100% M 345224 F 0 R 291074 W 0 c 64 w 265 I 0 O 856 L 24.30 24.19 22.79 @#@FSLOADPOST 2025:10:22:10:36:27 seg2cc N 2 24.35 24.21 22.82 #-------------------------------------- #@# Merge ASeg Wed Oct 22 10:36:27 CDT 2025 cp aseg.auto.mgz aseg.presurf.mgz #-------------------------------------------- #@# Intensity Normalization2 Wed Oct 22 10:36:27 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_normalize -seed 1234 -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading mri_src from norm.mgz... Reading aseg aseg.presurf.mgz aseg read with width 256 (src width 256) normalizing image... NOT doing gentle normalization with control points/label processing with aseg removing outliers in the aseg WM... 2664 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 60 (60), valley at 30 (30) csf peak at 31, setting threshold to 50 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 60 (60), valley at 29 (29) csf peak at 30, setting threshold to 50 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 1 minutes and 43 seconds. @#@FSTIME 2025:10:22:10:36:27 mri_normalize N 9 e 104.05 S 1.45 U 102.58 P 99% M 1143396 F 0 R 618389 W 0 c 186 w 1 I 0 O 2264 L 24.35 24.21 22.82 @#@FSLOADPOST 2025:10:22:10:38:11 mri_normalize N 9 24.06 24.14 22.95 #-------------------------------------------- #@# Mask BFS Wed Oct 22 10:38:11 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1404100 voxels in mask (pct= 8.37) maskval=0, outval=0 Writing masked volume to brain.finalsurfs.mgz...done. @#@FSTIME 2025:10:22:10:38:11 mri_mask N 5 e 0.69 S 0.03 U 0.65 P 100% M 74240 F 0 R 17257 W 0 c 2 w 1 I 0 O 2264 L 24.06 24.14 22.95 @#@FSLOADPOST 2025:10:22:10:38:12 mri_mask N 5 24.06 24.14 22.95 mri_mask -oval 1 -invert brain.finalsurfs.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/mca-dura.mgz brain.finalsurfs.mgz setting masked output voxels to 1.0 instead of 0 Inverting and binarizing mask thresh = 0.5 count 16776237 Resetting threshold to 0.5 DoAbs = 0 Found 16776237 voxels in mask (pct= 99.99) maskval=0, outval=1 Writing masked volume to brain.finalsurfs.mgz...done. @#@FSTIME 2025:10:22:10:38:12 mri_mask N 6 e 1.19 S 0.09 U 1.10 P 99% M 172544 F 0 R 41916 W 0 c 3 w 1 I 0 O 2264 L 24.06 24.14 22.95 @#@FSLOADPOST 2025:10:22:10:38:13 mri_mask N 6 24.05 24.14 22.96 mri_mask -oval 1 -invert brain.finalsurfs.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/vsinus.mgz brain.finalsurfs.mgz setting masked output voxels to 1.0 instead of 0 Inverting and binarizing mask thresh = 0.5 count 16766940 Resetting threshold to 0.5 DoAbs = 0 Found 16766940 voxels in mask (pct= 99.94) maskval=0, outval=1 Writing masked volume to brain.finalsurfs.mgz...done. @#@FSTIME 2025:10:22:10:38:13 mri_mask N 6 e 1.18 S 0.08 U 1.09 P 100% M 172544 F 0 R 41917 W 0 c 3 w 1 I 0 O 2256 L 24.05 24.14 22.96 @#@FSLOADPOST 2025:10:22:10:38:14 mri_mask N 6 24.05 24.14 22.96 mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 2 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 2 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz Fixing entowm 2 255 255 MRIfixEntoWM(): 255 255 Level=2 MRIfixEntoWM(): nchanged = 392 @#@FSTIME 2025:10:22:10:38:14 mri_edit_wm_with_aseg N 7 e 0.82 S 0.04 U 0.75 P 96% M 90112 F 0 R 21179 W 0 c 2 w 3 I 0 O 2256 L 24.05 24.14 22.96 @#@FSLOADPOST 2025:10:22:10:38:15 mri_edit_wm_with_aseg N 7 24.05 24.14 22.96 mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 brain.finalsurfs.mgz brain.finalsurfs.mgz mri_edit_wm_wit supposed to be reproducible but seed not set LabelAmygalaCortalJunction((): nhits = 3375 Fixing ACJ 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 620 @#@FSTIME 2025:10:22:10:38:15 mri_edit_wm_with_aseg N 6 e 0.98 S 0.05 U 0.89 P 96% M 82432 F 0 R 39820 W 0 c 5 w 4 I 0 O 2256 L 24.05 24.14 22.96 @#@FSLOADPOST 2025:10:22:10:38:16 mri_edit_wm_with_aseg N 6 24.05 24.14 22.96 cp brain.finalsurfs.mgz brain.finalsurfs.manedit.mgz #-------------------------------------------- #@# WM Segmentation Wed Oct 22 10:38:16 CDT 2025 AntsDenoiseImageFs -i brain.mgz -o antsdn.brain.mgz @#@FSTIME 2025:10:22:10:38:16 AntsDenoiseImageFs N 4 e 24.13 S 0.17 U 23.95 P 99% M 351232 F 0 R 86504 W 0 c 34 w 1 I 0 O 2280 L 24.05 24.14 22.96 @#@FSLOADPOST 2025:10:22:10:38:40 AntsDenoiseImageFs N 4 24.11 24.14 22.99 mri_segment -wsizemm 13 -mprage antsdn.brain.mgz wm.seg.mgz wsizemm = 13, voxres = 1, wsize = 13 Widening wm low from 89 to 79 assuming input volume is MGH (Van der Kouwe) MP-RAGE wm mean: 110 wsize: 13 wm low: 79 wm hi: 125 gray low: 30 gray hi: 99 Doing initial trinary intensity segmentation MRIintensitySegmentation() wm_low=79, wm_hi=125, gray_hi=99 white = 289506, nonwhite = 16290617, ambig = 197093, nmask = 0 Using local statistics to label ambiguous voxels Autodetecting stats Computing class statistics for intensity windows... CCS WM (105.0): 105.0 +- 4.7 [79.0 --> 125.0] CCS GM (69.0) : 68.9 +- 8.9 [30.0 --> 95.0] white_mean 104.983 white_sigma 4.73397 gray_mean 68.8708 gray_sigma 8.93722 setting bottom of white matter range wm_low to 77.8 setting top of gray matter range gray_hi to 86.7 wm_low 77.808 wm_hi 125 gray_low 30 gray_hi 86.7452 Redoing initial intensity segmentation... MRIintensitySegmentation() wm_low=77.808, wm_hi=125, gray_hi=86.7452 white = 405577, nonwhite = 16278711, ambig = 92928, nmask = 0 Recomputing local statistics to label ambiguous voxels... wm_low 77.808 wm_hi 125 gray_low 30 gray_hi 86.7452 using local geometry to label remaining ambiguous voxels... polvwsize = 5, polvlen = 3, gray_hi = 86.7452, wm_low = 77.808 MRIcpolvMedianCurveSegment(): wsize=5, len=3, gmhi=86.7452, wmlow=77.808 91511 voxels processed (0.55%) 37847 voxels white (0.23%) 53664 voxels non-white (0.32%) Reclassifying voxels using Gaussian border classifier niter=1 MRIreclassify(): wm_low=72.808, gray_hi=86.7452, wsize=13 162496 voxels tested (0.97%) 35110 voxels changed (0.21%) 48043 multi-scale searches (0.29%) Recovering bright white MRIrecoverBrightWhite() wm_low 77.808 wm_hi 125 slack 4.73397 pct_thresh 0.33 intensity_thresh 129.734 nvox_thresh 8.58 132 voxels tested (0.00%) 93 voxels changed (0.00%) removing voxels with positive offset direction... MRIremoveWrongDirection() wsize=3, lowthr=72.808, hithr=86.7452 smoothing input volume with sigma = 0.250 41975 voxels tested (0.25%) 9349 voxels changed (0.06%) thicken = 1 removing 1-dimensional structures... MRIremove1dStructures(): max_iter=10000, thresh=2, WM_MIN_VAL=5 3430 sparsely connected voxels removed in 1 iterations thickening thin strands.... thickness 4 nsegments 20 wm_hi 125 1641 diagonally connected voxels added... MRIthickenThinWMStrands(): thickness=4, nsegments=20 20 segments, 5271 filled MRIfindBrightNonWM(): 583 bright non-wm voxels segmented. MRIfilterMorphology() WM_MIN_VAL=5, DIAGONAL_FILL=230 white matter segmentation took 0.6 minutes writing output to wm.seg.mgz... @#@FSTIME 2025:10:22:10:38:40 mri_segment N 5 e 37.97 S 0.35 U 37.62 P 99% M 144020 F 0 R 287247 W 0 c 52 w 1 I 0 O 728 L 24.11 24.14 22.99 @#@FSLOADPOST 2025:10:22:10:39:18 mri_segment N 5 24.12 24.14 23.04 mri_edit_wm_with_aseg -keep-in -fix-ento-wm entowm.mgz 3 255 255 -fix-acj aseg.presurf.mgz 255 255 -fill-seg-wm -fix-scm-ha 1 wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz mri_edit_wm_with_aseg -keep-in -fix-ento-wm entowm.mgz 3 255 255 -fix-acj aseg.presurf.mgz 255 255 -fill-seg-wm -fix-scm-ha 1 wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz preserving editing changes in input volume... mri_edit_wm_wit supposed to be reproducible but seed not set auto filling took 0.50 minutes Fixing entowm 3 255 255 LabelAmygalaCortalJunction((): nhits = 3375 Fixing ACJ 255 255 FixSCM HA 1 reading wm segmentation from wm.seg.mgz... 0 voxels added to wm to prevent paths from MTL structures to cortex 5871 additional wm voxels added 0 additional wm voxels added SEG EDIT: 192543 voxels turned on, 30849 voxels turned off. Dilating 1 voxels in 3d propagating editing to output volume from wm.seg.mgz MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 2006 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 620 writing edited volume to wm.asegedit.mgz.... @#@FSTIME 2025:10:22:10:39:18 mri_edit_wm_with_aseg N 17 e 29.77 S 0.54 U 29.22 P 99% M 645592 F 0 R 402007 W 0 c 38 w 1 I 0 O 656 L 24.12 24.14 23.04 @#@FSLOADPOST 2025:10:22:10:39:48 mri_edit_wm_with_aseg N 17 24.07 24.13 23.08 mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 28 found - 28 modified | TOTAL: 28 pass 2 (xy+): 0 found - 28 modified | TOTAL: 28 pass 1 (xy-): 25 found - 25 modified | TOTAL: 53 pass 2 (xy-): 0 found - 25 modified | TOTAL: 53 pass 1 (yz+): 22 found - 22 modified | TOTAL: 75 pass 2 (yz+): 0 found - 22 modified | TOTAL: 75 pass 1 (yz-): 32 found - 32 modified | TOTAL: 107 pass 2 (yz-): 0 found - 32 modified | TOTAL: 107 pass 1 (xz+): 23 found - 23 modified | TOTAL: 130 pass 2 (xz+): 0 found - 23 modified | TOTAL: 130 pass 1 (xz-): 21 found - 21 modified | TOTAL: 151 pass 2 (xz-): 0 found - 21 modified | TOTAL: 151 Iteration Number : 1 pass 1 (+++): 16 found - 16 modified | TOTAL: 16 pass 2 (+++): 0 found - 16 modified | TOTAL: 16 pass 1 (+++): 16 found - 16 modified | TOTAL: 32 pass 2 (+++): 0 found - 16 modified | TOTAL: 32 pass 1 (+++): 8 found - 8 modified | TOTAL: 40 pass 2 (+++): 0 found - 8 modified | TOTAL: 40 pass 1 (+++): 6 found - 6 modified | TOTAL: 46 pass 2 (+++): 0 found - 6 modified | TOTAL: 46 Iteration Number : 1 pass 1 (++): 141 found - 141 modified | TOTAL: 141 pass 2 (++): 0 found - 141 modified | TOTAL: 141 pass 1 (+-): 123 found - 123 modified | TOTAL: 264 pass 2 (+-): 0 found - 123 modified | TOTAL: 264 pass 1 (--): 113 found - 113 modified | TOTAL: 377 pass 2 (--): 0 found - 113 modified | TOTAL: 377 pass 1 (-+): 163 found - 163 modified | TOTAL: 540 pass 2 (-+): 0 found - 163 modified | TOTAL: 540 Iteration Number : 2 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 2 found - 2 modified | TOTAL: 3 pass 2 (xy-): 0 found - 2 modified | TOTAL: 3 pass 1 (yz+): 5 found - 5 modified | TOTAL: 8 pass 2 (yz+): 0 found - 5 modified | TOTAL: 8 pass 1 (yz-): 6 found - 6 modified | TOTAL: 14 pass 2 (yz-): 0 found - 6 modified | TOTAL: 14 pass 1 (xz+): 1 found - 1 modified | TOTAL: 15 pass 2 (xz+): 0 found - 1 modified | TOTAL: 15 pass 1 (xz-): 4 found - 4 modified | TOTAL: 19 pass 2 (xz-): 0 found - 4 modified | TOTAL: 19 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 1 found - 1 modified | TOTAL: 3 pass 2 (+++): 0 found - 1 modified | TOTAL: 3 Iteration Number : 2 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 1 found - 1 modified | TOTAL: 2 pass 2 (+-): 0 found - 1 modified | TOTAL: 2 pass 1 (--): 2 found - 2 modified | TOTAL: 4 pass 2 (--): 0 found - 2 modified | TOTAL: 4 pass 1 (-+): 1 found - 1 modified | TOTAL: 5 pass 2 (-+): 0 found - 1 modified | TOTAL: 5 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 1 found - 1 modified | TOTAL: 1 pass 2 (yz-): 0 found - 1 modified | TOTAL: 1 pass 1 (xz+): 1 found - 1 modified | TOTAL: 2 pass 2 (xz+): 0 found - 1 modified | TOTAL: 2 pass 1 (xz-): 2 found - 2 modified | TOTAL: 4 pass 2 (xz-): 0 found - 2 modified | TOTAL: 4 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 0 found - 0 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 769 (out of 442449: 0.173805) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done @#@FSTIME 2025:10:22:10:39:48 mri_pretess N 4 e 2.10 S 0.03 U 2.07 P 100% M 56320 F 0 R 12951 W 0 c 6 w 1 I 0 O 656 L 24.07 24.13 23.08 @#@FSLOADPOST 2025:10:22:10:39:50 mri_pretess N 4 24.07 24.13 23.08 Fixing entowm in wm.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 3 255 255 wm.mgz wm.mgz mri_edit_wm_with_aseg -sa-fix-ento-wm entowm.mgz 3 255 255 wm.mgz wm.mgz Fixing entowm 3 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 2006 @#@FSTIME 2025:10:22:10:39:50 mri_edit_wm_with_aseg N 7 e 0.78 S 0.03 U 0.70 P 94% M 89600 F 0 R 21177 W 0 c 2 w 3 I 0 O 656 L 24.07 24.13 23.08 @#@FSLOADPOST 2025:10:22:10:39:51 mri_edit_wm_with_aseg N 7 24.07 24.13 23.08 Fixing ACJ in wm.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 wm.mgz wm.mgz mri_edit_wm_with_aseg -sa-fix-acj aseg.presurf.mgz 255 255 wm.mgz wm.mgz mri_edit_wm_wit supposed to be reproducible but seed not set LabelAmygalaCortalJunction((): nhits = 3375 Fixing ACJ 255 255 MRIfixEntoWM(): 255 255 Level=3 MRIfixEntoWM(): nchanged = 620 @#@FSTIME 2025:10:22:10:39:51 mri_edit_wm_with_aseg N 6 e 0.93 S 0.05 U 0.87 P 99% M 82432 F 0 R 39815 W 0 c 4 w 3 I 0 O 656 L 24.07 24.13 23.08 @#@FSLOADPOST 2025:10:22:10:39:52 mri_edit_wm_with_aseg N 6 24.07 24.13 23.08 #-------------------------------------------- #@# Fill Wed Oct 22 10:39:52 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.presurf.mgz -ctab /usr/local/freesurfer/8.0.0/SubCorticalMassLUT.txt wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.presurf.mgz... done. searching for cutting planes...voxel to talairach voxel transform 1.10526 -0.04083 -0.00694 -9.37247; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; reading input volume... wm.mgzvoxel to talairach voxel transform 1.10526 -0.04083 -0.00694 -9.37247; 0.03837 1.17061 -0.00929 5.71144; 0.00630 0.00878 1.03630 -16.99796; 0.00000 0.00000 0.00000 1.00000; reading segmented volume aseg.presurf.mgz removing CC from segmentation Looking for area (min, max) = (350, 1400) area[0] = 2309 (min = 350, max = 1400), aspect = 1.35 (min = 0.10, max = 0.75) need search nearby using seed (125, 116, 146), TAL = (3.0, 18.0, 12.0) talairach voxel to voxel transform 0.90363 0.03147 0.00633 8.39719; -0.02966 0.85317 0.00745 -5.02422; -0.00524 -0.00742 0.96487 16.39415; 0.00000 0.00000 0.00000 1.00000; segmentation indicates cc at (125, 116, 146) --> (3.0, 18.0, 12.0) done. filling took 0.8 minutes talairach cc position changed to (3.00, 18.00, 12.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(21.00, 18.00, 12.00) SRC: (109.66, 91.86, 155.84) search lh wm seed point around talairach space (-15.00, 18.00, 12.00), SRC: (142.19, 90.79, 155.66) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram for separating WM into two hemispheres ... Find the largest connected component for each hemisphere ... Embedding colortable mri_fill done, writing output to filled.mgz... @#@FSTIME 2025:10:22:10:39:52 mri_fill N 10 e 45.92 S 1.20 U 44.71 P 99% M 864964 F 0 R 456248 W 0 c 73 w 1 I 0 O 248 L 24.07 24.13 23.08 @#@FSLOADPOST 2025:10:22:10:40:38 mri_fill N 10 24.08 24.12 23.13 cp filled.mgz filled.auto.mgz #-------------------------------------------- #@# Tessellate lh Wed Oct 22 10:40:38 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 5 found - 5 modified | TOTAL: 5 pass 2 (xy-): 0 found - 5 modified | TOTAL: 5 pass 1 (yz+): 7 found - 7 modified | TOTAL: 12 pass 2 (yz+): 0 found - 7 modified | TOTAL: 12 pass 1 (yz-): 6 found - 6 modified | TOTAL: 18 pass 2 (yz-): 0 found - 6 modified | TOTAL: 18 pass 1 (xz+): 3 found - 3 modified | TOTAL: 21 pass 2 (xz+): 0 found - 3 modified | TOTAL: 21 pass 1 (xz-): 3 found - 3 modified | TOTAL: 24 pass 2 (xz-): 0 found - 3 modified | TOTAL: 24 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 1 found - 1 modified | TOTAL: 3 pass 2 (+++): 0 found - 1 modified | TOTAL: 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 3 Iteration Number : 1 pass 1 (++): 2 found - 2 modified | TOTAL: 2 pass 2 (++): 0 found - 2 modified | TOTAL: 2 pass 1 (+-): 0 found - 0 modified | TOTAL: 2 pass 1 (--): 0 found - 0 modified | TOTAL: 2 pass 1 (-+): 1 found - 1 modified | TOTAL: 3 pass 2 (-+): 0 found - 1 modified | TOTAL: 3 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 1 found - 1 modified | TOTAL: 1 pass 2 (xy-): 0 found - 1 modified | TOTAL: 1 pass 1 (yz+): 0 found - 0 modified | TOTAL: 1 pass 1 (yz-): 0 found - 0 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 31 (out of 213910: 0.014492) Ambiguous edge configurations... mri_pretess done @#@FSTIME 2025:10:22:10:40:38 mri_pretess N 4 e 1.22 S 0.01 U 1.20 P 99% M 39936 F 0 R 8795 W 0 c 3 w 1 I 0 O 240 L 24.08 24.12 23.13 @#@FSLOADPOST 2025:10:22:10:40:39 mri_pretess N 4 24.08 24.12 23.13 mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix 8.0.0 8.0.0 slice 50: 1582 vertices, 1686 faces slice 60: 6527 vertices, 6709 faces slice 70: 14494 vertices, 14791 faces slice 80: 24223 vertices, 24617 faces slice 90: 35508 vertices, 35859 faces slice 100: 46664 vertices, 47043 faces slice 110: 58045 vertices, 58398 faces slice 120: 69238 vertices, 69600 faces slice 130: 80117 vertices, 80470 faces slice 140: 91049 vertices, 91414 faces slice 150: 99491 vertices, 99796 faces slice 160: 106720 vertices, 107013 faces slice 170: 114115 vertices, 114368 faces slice 180: 120075 vertices, 120303 faces slice 190: 124534 vertices, 124693 faces slice 200: 126801 vertices, 126852 faces slice 210: 126862 vertices, 126890 faces slice 220: 126862 vertices, 126890 faces slice 230: 126862 vertices, 126890 faces slice 240: 126862 vertices, 126890 faces slice 250: 126862 vertices, 126890 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; @#@FSTIME 2025:10:22:10:40:39 mri_tessellate N 3 e 0.82 S 0.02 U 0.80 P 99% M 36352 F 0 R 8170 W 0 c 1 w 1 I 0 O 5952 L 24.08 24.12 23.13 @#@FSLOADPOST 2025:10:22:10:40:40 mri_tessellate N 3 24.08 24.12 23.13 rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 126862 voxel in cpt #1: X=-28 [v=126862,e=380670,f=253780] located at (-24.780573, -12.207801, 42.772919) For the whole surface: X=-28 [v=126862,e=380670,f=253780] One single component has been found nothing to do done @#@FSTIME 2025:10:22:10:40:40 mris_extract_main_component N 2 e 0.60 S 0.16 U 0.44 P 100% M 252480 F 0 R 66645 W 0 c 2 w 1 I 0 O 8928 L 24.08 24.12 23.13 @#@FSLOADPOST 2025:10:22:10:40:40 mris_extract_main_component N 2 24.08 24.12 23.13 #-------------------------------------------- #@# Tessellate rh Wed Oct 22 10:40:40 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 2 found - 2 modified | TOTAL: 2 pass 2 (xy+): 0 found - 2 modified | TOTAL: 2 pass 1 (xy-): 1 found - 1 modified | TOTAL: 3 pass 2 (xy-): 0 found - 1 modified | TOTAL: 3 pass 1 (yz+): 8 found - 8 modified | TOTAL: 11 pass 2 (yz+): 0 found - 8 modified | TOTAL: 11 pass 1 (yz-): 9 found - 9 modified | TOTAL: 20 pass 2 (yz-): 0 found - 9 modified | TOTAL: 20 pass 1 (xz+): 4 found - 4 modified | TOTAL: 24 pass 2 (xz+): 0 found - 4 modified | TOTAL: 24 pass 1 (xz-): 1 found - 1 modified | TOTAL: 25 pass 2 (xz-): 0 found - 1 modified | TOTAL: 25 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 0 found - 0 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 2 found - 2 modified | TOTAL: 3 pass 2 (-+): 0 found - 2 modified | TOTAL: 3 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 28 (out of 213053: 0.013142) Ambiguous edge configurations... mri_pretess done @#@FSTIME 2025:10:22:10:40:40 mri_pretess N 4 e 0.95 S 0.01 U 0.94 P 100% M 40448 F 0 R 8793 W 0 c 2 w 1 I 0 O 240 L 24.08 24.12 23.13 @#@FSLOADPOST 2025:10:22:10:40:41 mri_pretess N 4 24.08 24.12 23.13 mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix 8.0.0 8.0.0 slice 50: 2020 vertices, 2145 faces slice 60: 7374 vertices, 7584 faces slice 70: 14577 vertices, 14865 faces slice 80: 23845 vertices, 24216 faces slice 90: 34612 vertices, 34999 faces slice 100: 45268 vertices, 45640 faces slice 110: 56608 vertices, 56988 faces slice 120: 67616 vertices, 68001 faces slice 130: 78115 vertices, 78468 faces slice 140: 88612 vertices, 88974 faces slice 150: 97110 vertices, 97391 faces slice 160: 104400 vertices, 104670 faces slice 170: 111573 vertices, 111835 faces slice 180: 117488 vertices, 117692 faces slice 190: 122245 vertices, 122407 faces slice 200: 125135 vertices, 125199 faces slice 210: 125334 vertices, 125356 faces slice 220: 125334 vertices, 125356 faces slice 230: 125334 vertices, 125356 faces slice 240: 125334 vertices, 125356 faces slice 250: 125334 vertices, 125356 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; @#@FSTIME 2025:10:22:10:40:41 mri_tessellate N 3 e 0.83 S 0.02 U 0.80 P 99% M 36352 F 0 R 8139 W 0 c 5 w 1 I 0 O 5880 L 24.08 24.12 23.13 @#@FSLOADPOST 2025:10:22:10:40:42 mri_tessellate N 3 24.08 24.12 23.13 rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 125334 voxel in cpt #1: X=-22 [v=125334,e=376068,f=250712] located at (27.665709, -11.473207, 38.473686) For the whole surface: X=-22 [v=125334,e=376068,f=250712] One single component has been found nothing to do done @#@FSTIME 2025:10:22:10:40:42 mris_extract_main_component N 2 e 0.69 S 0.15 U 0.47 P 90% M 249820 F 0 R 65246 W 0 c 5 w 3 I 0 O 8816 L 24.08 24.12 23.13 @#@FSLOADPOST 2025:10:22:10:40:43 mris_extract_main_component N 2 24.07 24.12 23.14 #-------------------------------------------- #@# Smooth1 lh Wed Oct 22 10:40:43 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2025:10:22:10:40:43 mris_smooth N 5 e 2.07 S 0.12 U 1.95 P 99% M 200980 F 0 R 59670 W 0 c 5 w 1 I 0 O 8928 L 24.07 24.12 23.14 @#@FSLOADPOST 2025:10:22:10:40:45 mris_smooth N 5 24.07 24.12 23.14 #-------------------------------------------- #@# Smooth1 rh Wed Oct 22 10:40:45 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2025:10:22:10:40:45 mris_smooth N 5 e 2.02 S 0.13 U 1.89 P 99% M 198924 F 0 R 58934 W 0 c 17 w 1 I 0 O 8816 L 24.07 24.12 23.14 @#@FSLOADPOST 2025:10:22:10:40:47 mris_smooth N 5 24.07 24.12 23.14 #-------------------------------------------- #@# Inflation1 lh Wed Oct 22 10:40:47 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix Not saving sulc Reading ../surf/lh.smoothwm.nofix avg radius = 44.2 mm, total surface area = 68109 mm^2 step 000: RMS=0.151 (target=0.015) step 005: RMS=0.115 (target=0.015) step 010: RMS=0.086 (target=0.015) step 015: RMS=0.072 (target=0.015) step 020: RMS=0.062 (target=0.015) step 025: RMS=0.054 (target=0.015) step 030: RMS=0.048 (target=0.015) step 035: RMS=0.044 (target=0.015) step 040: RMS=0.041 (target=0.015) step 045: RMS=0.039 (target=0.015) step 050: RMS=0.037 (target=0.015) step 055: RMS=0.038 (target=0.015) step 060: RMS=0.039 (target=0.015) writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.3 minutes inflation complete. Not saving sulc mris_inflate utimesec 15.066187 mris_inflate stimesec 1.273931 mris_inflate ru_maxrss 201576 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 530370 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 8928 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 0 mris_inflate ru_nivcsw 31 @#@FSTIME 2025:10:22:10:40:47 mris_inflate N 3 e 16.36 S 1.29 U 15.06 P 99% M 201576 F 0 R 530378 W 0 c 31 w 1 I 0 O 8928 L 24.07 24.12 23.14 @#@FSLOADPOST 2025:10:22:10:41:04 mris_inflate N 3 24.05 24.11 23.16 #-------------------------------------------- #@# Inflation1 rh Wed Oct 22 10:41:04 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 44.7 mm, total surface area = 67494 mm^2 step 000: RMS=0.151 (target=0.015) step 005: RMS=0.115 (target=0.015) step 010: RMS=0.084 (target=0.015) step 015: RMS=0.071 (target=0.015) step 020: RMS=0.060 (target=0.015) step 025: RMS=0.053 (target=0.015) step 030: RMS=0.046 (target=0.015) step 035: RMS=0.042 (target=0.015) step 040: RMS=0.039 (target=0.015) step 045: RMS=0.036 (target=0.015) step 050: RMS=0.034 (target=0.015) step 055: RMS=0.034 (target=0.015) step 060: RMS=0.033 (target=0.015) writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.3 minutes inflation complete. Not saving sulc mris_inflate utimesec 15.082063 mris_inflate stimesec 1.235923 mris_inflate ru_maxrss 198952 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 524078 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 8824 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 0 mris_inflate ru_nivcsw 82 @#@FSTIME 2025:10:22:10:41:04 mris_inflate N 3 e 16.33 S 1.25 U 15.08 P 99% M 198952 F 0 R 524085 W 0 c 82 w 1 I 0 O 8824 L 24.05 24.11 23.16 @#@FSLOADPOST 2025:10:22:10:41:20 mris_inflate N 3 24.12 24.12 23.18 #-------------------------------------------- #@# QSphere lh Wed Oct 22 10:41:20 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 scaling brain by 0.317... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 1.03 +- 0.59 (0.00-->10.18) (max @ vno 51178 --> 52335) face area 0.03 +- 0.03 (-0.65-->0.74) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.854, avgs=0 005/300: dt: 0.9000, rms radial error=176.595, avgs=0 010/300: dt: 0.9000, rms radial error=176.039, avgs=0 015/300: dt: 0.9000, rms radial error=175.309, avgs=0 020/300: dt: 0.9000, rms radial error=174.478, avgs=0 025/300: dt: 0.9000, rms radial error=173.590, avgs=0 030/300: dt: 0.9000, rms radial error=172.669, avgs=0 035/300: dt: 0.9000, rms radial error=171.733, avgs=0 040/300: dt: 0.9000, rms radial error=170.790, avgs=0 045/300: dt: 0.9000, rms radial error=169.843, avgs=0 050/300: dt: 0.9000, rms radial error=168.898, avgs=0 055/300: dt: 0.9000, rms radial error=167.954, avgs=0 060/300: dt: 0.9000, rms radial error=167.014, avgs=0 065/300: dt: 0.9000, rms radial error=166.078, avgs=0 070/300: dt: 0.9000, rms radial error=165.146, avgs=0 075/300: dt: 0.9000, rms radial error=164.220, avgs=0 080/300: dt: 0.9000, rms radial error=163.298, avgs=0 085/300: dt: 0.9000, rms radial error=162.381, avgs=0 090/300: dt: 0.9000, rms radial error=161.469, avgs=0 095/300: dt: 0.9000, rms radial error=160.562, avgs=0 100/300: dt: 0.9000, rms radial error=159.660, avgs=0 105/300: dt: 0.9000, rms radial error=158.764, avgs=0 110/300: dt: 0.9000, rms radial error=157.872, avgs=0 115/300: dt: 0.9000, rms radial error=156.985, avgs=0 120/300: dt: 0.9000, rms radial error=156.103, avgs=0 125/300: dt: 0.9000, rms radial error=155.225, avgs=0 130/300: dt: 0.9000, rms radial error=154.353, avgs=0 135/300: dt: 0.9000, rms radial error=153.485, avgs=0 140/300: dt: 0.9000, rms radial error=152.622, avgs=0 145/300: dt: 0.9000, rms radial error=151.764, avgs=0 150/300: dt: 0.9000, rms radial error=150.911, avgs=0 155/300: dt: 0.9000, rms radial error=150.062, avgs=0 160/300: dt: 0.9000, rms radial error=149.218, avgs=0 165/300: dt: 0.9000, rms radial error=148.379, avgs=0 170/300: dt: 0.9000, rms radial error=147.544, avgs=0 175/300: dt: 0.9000, rms radial error=146.714, avgs=0 180/300: dt: 0.9000, rms radial error=145.889, avgs=0 185/300: dt: 0.9000, rms radial error=145.068, avgs=0 190/300: dt: 0.9000, rms radial error=144.252, avgs=0 195/300: dt: 0.9000, rms radial error=143.441, avgs=0 200/300: dt: 0.9000, rms radial error=142.634, avgs=0 205/300: dt: 0.9000, rms radial error=141.832, avgs=0 210/300: dt: 0.9000, rms radial error=141.035, avgs=0 215/300: dt: 0.9000, rms radial error=140.241, avgs=0 220/300: dt: 0.9000, rms radial error=139.452, avgs=0 225/300: dt: 0.9000, rms radial error=138.668, avgs=0 230/300: dt: 0.9000, rms radial error=137.888, avgs=0 235/300: dt: 0.9000, rms radial error=137.112, avgs=0 240/300: dt: 0.9000, rms radial error=136.340, avgs=0 245/300: dt: 0.9000, rms radial error=135.573, avgs=0 250/300: dt: 0.9000, rms radial error=134.810, avgs=0 255/300: dt: 0.9000, rms radial error=134.051, avgs=0 260/300: dt: 0.9000, rms radial error=133.296, avgs=0 265/300: dt: 0.9000, rms radial error=132.546, avgs=0 270/300: dt: 0.9000, rms radial error=131.800, avgs=0 275/300: dt: 0.9000, rms radial error=131.058, avgs=0 280/300: dt: 0.9000, rms radial error=130.320, avgs=0 285/300: dt: 0.9000, rms radial error=129.586, avgs=0 290/300: dt: 0.9000, rms radial error=128.856, avgs=0 295/300: dt: 0.9000, rms radial error=128.130, avgs=0 300/300: dt: 0.9000, rms radial error=127.409, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 14696.98 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/13 = 0.00033 epoch 2 (K=40.0), pass 1, starting sse = 2348.56 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/13 = 0.00018 epoch 3 (K=160.0), pass 1, starting sse = 210.78 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.13/15 = 0.00868 epoch 4 (K=640.0), pass 1, starting sse = 10.35 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.17/23 = 0.00718 final distance error %100000.00 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.0306 hours FSRUNTIME@ mris_sphere 0.0306 hours 1 threads #VMPC# mris_sphere VmPeak 462932 mris_sphere done @#@FSTIME 2025:10:22:10:41:20 mris_sphere N 9 e 110.07 S 7.97 U 102.09 P 99% M 206544 F 0 R 3319103 W 0 c 371 w 1 I 0 O 8928 L 24.12 24.12 23.18 @#@FSLOADPOST 2025:10:22:10:43:10 mris_sphere N 9 24.29 24.16 23.30 #-------------------------------------------- #@# QSphere rh Wed Oct 22 10:43:10 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 scaling brain by 0.312... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 1.02 +- 0.59 (0.00-->8.81) (max @ vno 50568 --> 51697) face area 0.03 +- 0.03 (-0.53-->0.76) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=177.141, avgs=0 005/300: dt: 0.9000, rms radial error=176.882, avgs=0 010/300: dt: 0.9000, rms radial error=176.325, avgs=0 015/300: dt: 0.9000, rms radial error=175.595, avgs=0 020/300: dt: 0.9000, rms radial error=174.763, avgs=0 025/300: dt: 0.9000, rms radial error=173.875, avgs=0 030/300: dt: 0.9000, rms radial error=172.954, avgs=0 035/300: dt: 0.9000, rms radial error=172.018, avgs=0 040/300: dt: 0.9000, rms radial error=171.073, avgs=0 045/300: dt: 0.9000, rms radial error=170.126, avgs=0 050/300: dt: 0.9000, rms radial error=169.180, avgs=0 055/300: dt: 0.9000, rms radial error=168.236, avgs=0 060/300: dt: 0.9000, rms radial error=167.296, avgs=0 065/300: dt: 0.9000, rms radial error=166.360, avgs=0 070/300: dt: 0.9000, rms radial error=165.428, avgs=0 075/300: dt: 0.9000, rms radial error=164.501, avgs=0 080/300: dt: 0.9000, rms radial error=163.578, avgs=0 085/300: dt: 0.9000, rms radial error=162.661, avgs=0 090/300: dt: 0.9000, rms radial error=161.748, avgs=0 095/300: dt: 0.9000, rms radial error=160.841, avgs=0 100/300: dt: 0.9000, rms radial error=159.938, avgs=0 105/300: dt: 0.9000, rms radial error=159.040, avgs=0 110/300: dt: 0.9000, rms radial error=158.147, avgs=0 115/300: dt: 0.9000, rms radial error=157.258, avgs=0 120/300: dt: 0.9000, rms radial error=156.375, avgs=0 125/300: dt: 0.9000, rms radial error=155.497, avgs=0 130/300: dt: 0.9000, rms radial error=154.623, avgs=0 135/300: dt: 0.9000, rms radial error=153.754, avgs=0 140/300: dt: 0.9000, rms radial error=152.889, avgs=0 145/300: dt: 0.9000, rms radial error=152.030, avgs=0 150/300: dt: 0.9000, rms radial error=151.175, avgs=0 155/300: dt: 0.9000, rms radial error=150.325, avgs=0 160/300: dt: 0.9000, rms radial error=149.480, avgs=0 165/300: dt: 0.9000, rms radial error=148.639, avgs=0 170/300: dt: 0.9000, rms radial error=147.803, avgs=0 175/300: dt: 0.9000, rms radial error=146.972, avgs=0 180/300: dt: 0.9000, rms radial error=146.145, avgs=0 185/300: dt: 0.9000, rms radial error=145.322, avgs=0 190/300: dt: 0.9000, rms radial error=144.504, avgs=0 195/300: dt: 0.9000, rms radial error=143.691, avgs=0 200/300: dt: 0.9000, rms radial error=142.882, avgs=0 205/300: dt: 0.9000, rms radial error=142.077, avgs=0 210/300: dt: 0.9000, rms radial error=141.277, avgs=0 215/300: dt: 0.9000, rms radial error=140.482, avgs=0 220/300: dt: 0.9000, rms radial error=139.691, avgs=0 225/300: dt: 0.9000, rms radial error=138.904, avgs=0 230/300: dt: 0.9000, rms radial error=138.122, avgs=0 235/300: dt: 0.9000, rms radial error=137.344, avgs=0 240/300: dt: 0.9000, rms radial error=136.570, avgs=0 245/300: dt: 0.9000, rms radial error=135.801, avgs=0 250/300: dt: 0.9000, rms radial error=135.035, avgs=0 255/300: dt: 0.9000, rms radial error=134.275, avgs=0 260/300: dt: 0.9000, rms radial error=133.518, avgs=0 265/300: dt: 0.9000, rms radial error=132.766, avgs=0 270/300: dt: 0.9000, rms radial error=132.017, avgs=0 275/300: dt: 0.9000, rms radial error=131.273, avgs=0 280/300: dt: 0.9000, rms radial error=130.533, avgs=0 285/300: dt: 0.9000, rms radial error=129.798, avgs=0 290/300: dt: 0.9000, rms radial error=129.066, avgs=0 295/300: dt: 0.9000, rms radial error=128.338, avgs=0 300/300: dt: 0.9000, rms radial error=127.615, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 14582.36 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/13 = 0.00033 epoch 2 (K=40.0), pass 1, starting sse = 2355.19 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/13 = 0.00026 epoch 3 (K=160.0), pass 1, starting sse = 219.09 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.17/19 = 0.00912 epoch 4 (K=640.0), pass 1, starting sse = 8.86 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.13/26 = 0.00518 final distance error %100000.00 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.0341 hours FSRUNTIME@ mris_sphere 0.0341 hours 1 threads #VMPC# mris_sphere VmPeak 460684 mris_sphere done @#@FSTIME 2025:10:22:10:43:10 mris_sphere N 9 e 122.81 S 8.74 U 114.06 P 99% M 204272 F 0 R 3587363 W 0 c 252 w 1 I 0 O 8824 L 24.29 24.16 23.30 @#@FSLOADPOST 2025:10:22:10:45:13 mris_sphere N 9 24.28 24.16 23.41 #@# Fix Topology lh Wed Oct 22 10:45:13 CDT 2025 mris_fix_topology -threads 1 -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 -threads 1 sub-01EN91PG_ses-00A lh Setting OMP_NUM_THREADS=1 reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 Setting OMP_NUM_THREADS=1 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 8.0.0 8.0.0 before topology correction, eno=-28 (nv=126862, nf=253780, ne=380670, g=15) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 8 iterations marking ambiguous vertices... 3666 ambiguous faces found in tessellation segmenting defects... 23 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 7 into 6 -merging segment 11 into 8 -merging segment 16 into 15 20 defects to be corrected 0 vertices coincident reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.8024 (-4.9012) -vertex loglikelihood: -6.6481 (-3.3241) -normal dot loglikelihood: -3.6252 (-3.6252) -quad curv loglikelihood: -5.9441 (-2.9721) Total Loglikelihood : -26.0199 CORRECTING DEFECT 0 (vertices=488, convex hull=307, v0=1041) After retessellation of defect 0 (v0=1041), euler #=-20 (124764,373776,248992) : difference with theory (-17) = 3 CORRECTING DEFECT 1 (vertices=24, convex hull=27, v0=18630) After retessellation of defect 1 (v0=18630), euler #=-19 (124765,373787,249003) : difference with theory (-16) = 3 CORRECTING DEFECT 2 (vertices=31, convex hull=62, v0=22944) After retessellation of defect 2 (v0=22944), euler #=-18 (124779,373852,249055) : difference with theory (-15) = 3 CORRECTING DEFECT 3 (vertices=138, convex hull=170, v0=46306) After retessellation of defect 3 (v0=46306), euler #=-17 (124817,374047,249213) : difference with theory (-14) = 3 CORRECTING DEFECT 4 (vertices=6, convex hull=32, v0=47656) After retessellation of defect 4 (v0=47656), euler #=-16 (124819,374061,249226) : difference with theory (-13) = 3 CORRECTING DEFECT 5 (vertices=44, convex hull=51, v0=51139) After retessellation of defect 5 (v0=51139), euler #=-15 (124828,374109,249266) : difference with theory (-12) = 3 CORRECTING DEFECT 6 (vertices=11, convex hull=35, v0=69678) After retessellation of defect 6 (v0=69678), euler #=-13 (124833,374136,249290) : difference with theory (-11) = 2 CORRECTING DEFECT 7 (vertices=354, convex hull=251, v0=81742) After retessellation of defect 7 (v0=81742), euler #=-11 (124893,374439,249535) : difference with theory (-10) = 1 CORRECTING DEFECT 8 (vertices=275, convex hull=87, v0=82889) normal vector of length zero at vertex 125955 with 4 faces normal vector of length zero at vertex 125955 with 4 faces normal vector of length zero at vertex 125955 with 4 faces After retessellation of defect 8 (v0=82889), euler #=-10 (124944,374632,249678) : difference with theory (-9) = 1 CORRECTING DEFECT 9 (vertices=25, convex hull=55, v0=83490) After retessellation of defect 9 (v0=83490), euler #=-9 (124959,374697,249729) : difference with theory (-8) = 1 CORRECTING DEFECT 10 (vertices=20, convex hull=28, v0=88374) After retessellation of defect 10 (v0=88374), euler #=-8 (124963,374717,249746) : difference with theory (-7) = 1 CORRECTING DEFECT 11 (vertices=6, convex hull=19, v0=89590) After retessellation of defect 11 (v0=89590), euler #=-7 (124964,374724,249753) : difference with theory (-6) = 1 CORRECTING DEFECT 12 (vertices=308, convex hull=58, v0=90849) After retessellation of defect 12 (v0=90849), euler #=-6 (124975,374782,249801) : difference with theory (-5) = 1 CORRECTING DEFECT 13 (vertices=154, convex hull=80, v0=91730) After retessellation of defect 13 (v0=91730), euler #=-4 (124995,374878,249879) : difference with theory (-4) = 0 CORRECTING DEFECT 14 (vertices=61, convex hull=41, v0=96932) After retessellation of defect 14 (v0=96932), euler #=-3 (125007,374927,249917) : difference with theory (-3) = 0 CORRECTING DEFECT 15 (vertices=71, convex hull=49, v0=100062) After retessellation of defect 15 (v0=100062), euler #=-2 (125022,374994,249970) : difference with theory (-2) = 0 CORRECTING DEFECT 16 (vertices=23, convex hull=34, v0=110822) After retessellation of defect 16 (v0=110822), euler #=-1 (125028,375028,249999) : difference with theory (-1) = 0 CORRECTING DEFECT 17 (vertices=9, convex hull=27, v0=110888) After retessellation of defect 17 (v0=110888), euler #=0 (125030,375041,250011) : difference with theory (0) = 0 CORRECTING DEFECT 18 (vertices=79, convex hull=83, v0=112641) After retessellation of defect 18 (v0=112641), euler #=1 (125047,375129,250083) : difference with theory (1) = 0 CORRECTING DEFECT 19 (vertices=20, convex hull=26, v0=123632) After retessellation of defect 19 (v0=123632), euler #=2 (125052,375150,250100) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.23 (0.06-->13.13) (max @ vno 2891 --> 7152) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.23 (0.06-->13.13) (max @ vno 2891 --> 7152) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 69 mutations (32.9%), 141 crossovers (67.1%), 192 vertices were eliminated building final representation... 1810 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=125052, nf=250100, ne=375150, g=0) writing corrected surface to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 251 intersecting 001: 16 intersecting terminating search with 0 intersecting topology fixing took 2.9 minutes FSRUNTIME@ mris_fix_topology lh 0.0479 hours 1 threads #VMPC# mris_fix_topology VmPeak 746388 @#@FSTIME 2025:10:22:10:45:13 mris_fix_topology N 18 e 172.50 S 0.50 U 172.00 P 99% M 728288 F 0 R 216014 W 0 c 133 w 1 I 0 O 11776 L 24.28 24.16 23.41 @#@FSLOADPOST 2025:10:22:10:48:05 mris_fix_topology N 18 24.22 24.21 23.57 #@# Fix Topology rh Wed Oct 22 10:48:05 CDT 2025 mris_fix_topology -threads 1 -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 -threads 1 sub-01EN91PG_ses-00A rh Setting OMP_NUM_THREADS=1 reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 Setting OMP_NUM_THREADS=1 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 8.0.0 8.0.0 before topology correction, eno=-22 (nv=125334, nf=250712, ne=376068, g=12) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 8 iterations marking ambiguous vertices... 2619 ambiguous faces found in tessellation segmenting defects... 18 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 6 into 5 -merging segment 14 into 13 16 defects to be corrected 0 vertices coincident reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.8160 (-4.9080) -vertex loglikelihood: -6.6758 (-3.3379) -normal dot loglikelihood: -3.5557 (-3.5557) -quad curv loglikelihood: -6.1385 (-3.0693) Total Loglikelihood : -26.1859 CORRECTING DEFECT 0 (vertices=24, convex hull=64, v0=9457) After retessellation of defect 0 (v0=9457), euler #=-14 (123817,370990,247159) : difference with theory (-13) = 1 CORRECTING DEFECT 1 (vertices=71, convex hull=131, v0=10063) After retessellation of defect 1 (v0=10063), euler #=-13 (123854,371159,247292) : difference with theory (-12) = 1 CORRECTING DEFECT 2 (vertices=240, convex hull=167, v0=43748) After retessellation of defect 2 (v0=43748), euler #=-12 (123881,371314,247421) : difference with theory (-11) = 1 CORRECTING DEFECT 3 (vertices=6, convex hull=40, v0=51635) After retessellation of defect 3 (v0=51635), euler #=-11 (123884,371335,247440) : difference with theory (-10) = 1 CORRECTING DEFECT 4 (vertices=9, convex hull=22, v0=61764) After retessellation of defect 4 (v0=61764), euler #=-10 (123887,371349,247452) : difference with theory (-9) = 1 CORRECTING DEFECT 5 (vertices=35, convex hull=67, v0=80826) After retessellation of defect 5 (v0=80826), euler #=-8 (123898,371409,247503) : difference with theory (-8) = 0 CORRECTING DEFECT 6 (vertices=755, convex hull=195, v0=86021) After retessellation of defect 6 (v0=86021), euler #=-8 (123935,371619,247676) : difference with theory (-7) = 1 CORRECTING DEFECT 7 (vertices=14, convex hull=20, v0=87172) After retessellation of defect 7 (v0=87172), euler #=-7 (123939,371638,247692) : difference with theory (-6) = 1 CORRECTING DEFECT 8 (vertices=85, convex hull=45, v0=88223) After retessellation of defect 8 (v0=88223), euler #=-6 (123955,371702,247741) : difference with theory (-5) = 1 CORRECTING DEFECT 9 (vertices=21, convex hull=47, v0=88301) After retessellation of defect 9 (v0=88301), euler #=-5 (123966,371751,247780) : difference with theory (-4) = 1 CORRECTING DEFECT 10 (vertices=45, convex hull=65, v0=92052) After retessellation of defect 10 (v0=92052), euler #=-4 (123993,371858,247861) : difference with theory (-3) = 1 CORRECTING DEFECT 11 (vertices=43, convex hull=41, v0=95386) After retessellation of defect 11 (v0=95386), euler #=-3 (124001,371898,247894) : difference with theory (-2) = 1 CORRECTING DEFECT 12 (vertices=106, convex hull=112, v0=97504) After retessellation of defect 12 (v0=97504), euler #=-1 (124026,372022,247995) : difference with theory (-1) = 0 CORRECTING DEFECT 13 (vertices=36, convex hull=29, v0=108945) After retessellation of defect 13 (v0=108945), euler #=0 (124038,372068,248030) : difference with theory (0) = 0 CORRECTING DEFECT 14 (vertices=24, convex hull=62, v0=116374) After retessellation of defect 14 (v0=116374), euler #=1 (124047,372118,248072) : difference with theory (1) = 0 CORRECTING DEFECT 15 (vertices=19, convex hull=46, v0=117910) After retessellation of defect 15 (v0=117910), euler #=2 (124056,372162,248108) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.22 (0.06-->11.26) (max @ vno 46976 --> 50174) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.22 (0.06-->11.26) (max @ vno 46976 --> 50174) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 78 mutations (36.1%), 138 crossovers (63.9%), 121 vertices were eliminated building final representation... 1278 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=124056, nf=248108, ne=372162, g=0) writing corrected surface to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 157 intersecting 001: 15 intersecting 002: 6 intersecting terminating search with 0 intersecting topology fixing took 2.0 minutes FSRUNTIME@ mris_fix_topology rh 0.0329 hours 1 threads #VMPC# mris_fix_topology VmPeak 744708 @#@FSTIME 2025:10:22:10:48:05 mris_fix_topology N 18 e 118.36 S 0.43 U 117.92 P 99% M 726336 F 0 R 214262 W 0 c 83 w 1 I 0 O 11680 L 24.22 24.21 23.57 @#@FSLOADPOST 2025:10:22:10:50:04 mris_fix_topology N 18 24.13 24.17 23.64 mris_euler_number ../surf/lh.orig.premesh euler # = v-e+f = 2g-2: 125052 - 375150 + 250100 = 2 --> 0 holes F =2V-4: 250100 = 250104-4 (0) 2E=3F: 750300 = 750300 (0) total defect index = 0 mris_euler_number ../surf/rh.orig.premesh euler # = v-e+f = 2g-2: 124056 - 372162 + 248108 = 2 --> 0 holes F =2V-4: 248108 = 248112-4 (0) 2E=3F: 744324 = 744324 (0) total defect index = 0 Wed Oct 22 10:50:05 CDT 2025 setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts /usr/local/freesurfer/8.0.0/bin/defect2seg --s sub-01EN91PG_ses-00A --cortex freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a defect2seg 8.0.0 Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux pid 91151 mri_label2label --label-cortex /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.orig.nofix /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/aseg.presurf.mgz 0 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.nofix.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 20 non-cortical segments detected only using segment with 6652 vertices erasing segment 0 (vno[0] = 38779) erasing segment 2 (vno[0] = 58865) erasing segment 3 (vno[0] = 61796) erasing segment 4 (vno[0] = 61814) erasing segment 5 (vno[0] = 62933) erasing segment 6 (vno[0] = 72104) erasing segment 7 (vno[0] = 76620) erasing segment 8 (vno[0] = 85924) erasing segment 9 (vno[0] = 86949) erasing segment 10 (vno[0] = 87047) erasing segment 11 (vno[0] = 89388) erasing segment 12 (vno[0] = 89432) erasing segment 13 (vno[0] = 89538) erasing segment 14 (vno[0] = 89592) erasing segment 15 (vno[0] = 91708) erasing segment 16 (vno[0] = 92635) erasing segment 17 (vno[0] = 96077) erasing segment 18 (vno[0] = 102116) erasing segment 19 (vno[0] = 110128) mri_label2vol --defects /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.orig.nofix /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.defect_labels /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz 1000 0 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/surface.defects.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.nofix.cortex.label mri_label2vol supposed to be reproducible but seed not set Contraining to label /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.nofix.cortex.label Changing input type 0 to MRI_INT Converting defects to volume: offset=1000, merge=0 Writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/surface.defects.mgz mris_defects_pointset -s /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.orig.nofix -d /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.defect_labels -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.defects.pointset --label /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.nofix.cortex.label Reading in surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.orig.nofix Reading in defect segmentation /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.defect_labels Reading in label /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.nofix.cortex.label #VMPC# mris_defects_pointset 168304 mris_defects_pointset done mri_label2label --label-cortex /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.orig.nofix /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/aseg.presurf.mgz 0 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.nofix.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 11 non-cortical segments detected only using segment with 6589 vertices erasing segment 1 (vno[0] = 53912) erasing segment 2 (vno[0] = 70543) erasing segment 3 (vno[0] = 74849) erasing segment 4 (vno[0] = 86023) erasing segment 5 (vno[0] = 86050) erasing segment 6 (vno[0] = 87077) erasing segment 7 (vno[0] = 89187) erasing segment 8 (vno[0] = 92766) erasing segment 9 (vno[0] = 97517) erasing segment 10 (vno[0] = 99703) mri_label2vol --defects /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.orig.nofix /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.defect_labels /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/surface.defects.mgz 2000 1 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/surface.defects.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.nofix.cortex.label mri_label2vol supposed to be reproducible but seed not set Contraining to label /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.nofix.cortex.label Converting defects to volume: offset=2000, merge=1 Writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/surface.defects.mgz mris_defects_pointset -s /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.orig.nofix -d /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.defect_labels -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.defects.pointset --label /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.nofix.cortex.label Reading in surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.orig.nofix Reading in defect segmentation /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.defect_labels Reading in label /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.nofix.cortex.label #VMPC# mris_defects_pointset 166452 mris_defects_pointset done Started at Wed Oct 22 10:50:05 CDT 2025 Ended at Wed Oct 22 10:50:26 CDT 2025 Defect2seg-Run-Time-Sec 21 Defect2seg-Run-Time-Min 0.42 Defect2seg-Run-Time-Hours 0.01 tkmeditfv sub-01EN91PG_ses-00A brain.finalsurfs.mgz -defect defect2seg Done @#@FSTIME 2025:10:22:10:50:05 defect2seg N 3 e 21.50 S 0.88 U 20.59 P 99% M 378476 F 0 R 426380 W 0 c 78 w 209 I 0 O 20784 L 24.13 24.17 23.64 @#@FSLOADPOST 2025:10:22:10:50:26 defect2seg N 3 24.16 24.18 23.65 mris_remesh --remesh --iters 3 --input /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.orig.premesh --output /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.orig iters = 3 standard remeshing without target adjusted l: 0.711387 remeshing to edge length 0.711387 with 3 iterations avg qual before : 0.891261 after: 0.971363 Removing intersections Remeshed surface quality stats nv0 = 125052 nv = 130161 1.04086 Area 260318 0.30353 0.03365 0.074116 0.5023 Corner 780954 60.00000 8.76515 14.920875 149.4672 Edge 390477 0.84518 0.08229 0.456673 1.2479 Hinge 390477 9.54317 10.50236 0.000020 123.3175 mris_remesh done @#@FSTIME 2025:10:22:10:50:26 mris_remesh N 7 e 24.87 S 0.52 U 24.34 P 99% M 699028 F 0 R 253467 W 0 c 38 w 1 I 0 O 9160 L 24.16 24.18 23.65 @#@FSLOADPOST 2025:10:22:10:50:51 mris_remesh N 7 24.17 24.18 23.67 mris_remesh --remesh --iters 3 --input /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.orig.premesh --output /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.orig iters = 3 standard remeshing without target adjusted l: 0.710777 remeshing to edge length 0.710777 with 3 iterations avg qual before : 0.890987 after: 0.971483 Removing intersections Remeshed surface quality stats nv0 = 124056 nv = 129379 1.04291 Area 258754 0.30253 0.03361 0.067536 0.4743 Corner 776262 60.00000 8.76302 14.118021 151.3565 Edge 388131 0.84374 0.08195 0.455894 1.2827 Hinge 388131 9.52981 10.43861 0.000030 132.9914 mris_remesh done @#@FSTIME 2025:10:22:10:50:51 mris_remesh N 7 e 24.07 S 0.55 U 23.51 P 99% M 693704 F 0 R 271084 W 0 c 35 w 1 I 0 O 9104 L 24.17 24.18 23.67 @#@FSLOADPOST 2025:10:22:10:51:15 mris_remesh N 7 24.46 24.25 23.71 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.00 hours Found 0 intersections writing corrected surface to ../surf/lh.orig @#@FSTIME 2025:10:22:10:51:15 mris_remove_intersection N 2 e 3.69 S 0.19 U 3.49 P 99% M 321480 F 0 R 92202 W 0 c 7 w 24 I 0 O 9160 L 24.46 24.25 23.71 @#@FSLOADPOST 2025:10:22:10:51:19 mris_remove_intersection N 2 24.51 24.26 23.71 rm -f ../surf/lh.inflated /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours Found 0 intersections writing corrected surface to ../surf/rh.orig @#@FSTIME 2025:10:22:10:51:19 mris_remove_intersection N 2 e 3.75 S 0.19 U 3.49 P 98% M 317652 F 0 R 91918 W 0 c 7 w 25 I 0 O 9104 L 24.51 24.26 23.71 @#@FSLOADPOST 2025:10:22:10:51:23 mris_remove_intersection N 2 24.51 24.26 23.71 rm -f ../surf/rh.inflated #-------------------------------------------- #@# AutoDetGWStats lh Wed Oct 22 10:51:23 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh 8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh border white: 219907 voxels (1.31%) border gray 262598 voxels (1.57%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/lh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=25388, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (99.0): 98.2 +- 9.8 [70.0 --> 110.0] CCS GM (66.0) : 67.1 +- 9.6 [30.0 --> 110.0] white_mean = 98.181 +/- 9.8293, gray_mean = 67.1268 +/- 9.58994 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=196 nbins=197 intensity peaks found at WM=104+-6.1, GM=62+-5.2 white_mode = 104, gray_mode = 62 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 52.4 (was 70.000000) setting MAX_BORDER_WHITE to 113.8 (was 105.000000) setting MIN_BORDER_WHITE to 62.0 (was 85.000000) setting MAX_CSF to 42.8 (was 40.000000) setting MAX_GRAY to 94.2 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 52.4 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 33.2 (was 40.000000) When placing the white surface white_border_hi = 113.829; white_border_low = 62; white_outside_low = 52.4101; white_inside_hi = 120; white_outside_hi = 113.829; When placing the pial surface pial_border_hi = 52.4101; pial_border_low = 33.2302; pial_outside_low = 10; pial_inside_hi = 94.1707; pial_outside_hi = 47.6151; #VMPC# mris_autodet_gwstats VmPeak 245224 mris_autodet_gwstats done @#@FSTIME 2025:10:22:10:51:23 mris_autodet_gwstats N 8 e 2.41 S 0.13 U 2.27 P 99% M 227060 F 0 R 64203 W 0 c 6 w 1 I 0 O 8 L 24.47 24.25 23.71 @#@FSLOADPOST 2025:10:22:10:51:25 mris_autodet_gwstats N 8 24.47 24.25 23.71 #-------------------------------------------- #@# AutoDetGWStats rh Wed Oct 22 10:51:25 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh 8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh border white: 219907 voxels (1.31%) border gray 262598 voxels (1.57%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/rh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=25388, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (99.0): 98.2 +- 9.8 [70.0 --> 110.0] CCS GM (66.0) : 67.1 +- 9.6 [30.0 --> 110.0] white_mean = 98.181 +/- 9.8293, gray_mean = 67.1268 +/- 9.58994 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=196 nbins=197 intensity peaks found at WM=104+-7.0, GM=61+-6.1 white_mode = 104, gray_mode = 61 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 51.4 (was 70.000000) setting MAX_BORDER_WHITE to 113.8 (was 105.000000) setting MIN_BORDER_WHITE to 61.0 (was 85.000000) setting MAX_CSF to 41.8 (was 40.000000) setting MAX_GRAY to 94.2 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 51.4 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 32.2 (was 40.000000) When placing the white surface white_border_hi = 113.829; white_border_low = 61; white_outside_low = 51.4101; white_inside_hi = 120; white_outside_hi = 113.829; When placing the pial surface pial_border_hi = 51.4101; pial_border_low = 32.2302; pial_outside_low = 10; pial_inside_hi = 94.1707; pial_outside_hi = 46.6151; #VMPC# mris_autodet_gwstats VmPeak 243828 mris_autodet_gwstats done @#@FSTIME 2025:10:22:10:51:25 mris_autodet_gwstats N 8 e 2.44 S 0.14 U 2.30 P 100% M 225256 F 0 R 66906 W 0 c 6 w 1 I 0 O 8 L 24.47 24.25 23.71 @#@FSLOADPOST 2025:10:22:10:51:28 mris_autodet_gwstats N 8 24.47 24.25 23.71 #-------------------------------------------- #@# WhitePreAparc lh Wed Oct 22 10:51:28 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz 8.0.0 8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz Reading in input surface ../surf/lh.orig Smoothing surface before ripping with 5 iterations Area 260318 0.26737 0.06422 0.006876 0.5786 Corner 780954 60.00000 9.76188 13.929535 139.0410 Edge 390477 0.78979 0.11634 0.085306 1.3612 Hinge 390477 6.42680 6.70583 0.000040 146.5005 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 987 MRIclipBrightWM(): nthresh=25388, wmmin=5, clip=110 MRIfindBrightNonWM(): 759 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 987 Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=5876, nmarked2=0, nripped=5876 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 76 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 65081: xyz = (-51.6019,-2.41123,55.1505) oxyz = (-51.6019,-2.41123,55.1505) wxzy = (-51.6019,-2.41123,55.1505) pxyz = (0,0,0) CBVO Creating mask 130161 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5952 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=5984, nmarked2=0, nripped=5984 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 0 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 62.0000000; outside_low = 52.4100650; outside_hi = 113.8293000; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 771844 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=2 had to be increased for 102 vertices, nripped=5984 mean border=76.6, 33 (33) missing vertices, mean dist 0.3 [0.4 (%39.4)->0.7 (%60.6))] %85 local maxima, %10 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1446 min Finding expansion regions mean absolute distance = 0.57 +- 0.62 4778 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=bbs96, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=3633602.8, rms=11.855 001: dt: 0.5000, sse=1853707.0, rms=8.310 (29.904%) 002: dt: 0.5000, sse=1187136.5, rms=6.501 (21.773%) 003: dt: 0.5000, sse=880642.2, rms=5.467 (15.896%) 004: dt: 0.5000, sse=724773.0, rms=4.856 (11.184%) 005: dt: 0.5000, sse=640436.7, rms=4.484 (7.663%) 006: dt: 0.5000, sse=599638.6, rms=4.291 (4.292%) 007: dt: 0.5000, sse=576734.8, rms=4.180 (2.603%) 008: dt: 0.5000, sse=562186.3, rms=4.104 (1.810%) rms = 4.0701/4.1041, sse=556580.1/562186.3, time step reduction 1 of 3 to 0.250 0 0 1 009: dt: 0.5000, sse=556580.1, rms=4.070 (0.827%) 010: dt: 0.2500, sse=289900.2, rms=2.391 (41.263%) 011: dt: 0.2500, sse=242413.2, rms=1.947 (18.558%) 012: dt: 0.2500, sse=230355.9, rms=1.816 (6.746%) 013: dt: 0.2500, sse=221010.4, rms=1.712 (5.694%) rms = 1.6696/1.7123, sse=217923.5/221010.4, time step reduction 2 of 3 to 0.125 0 0 1 014: dt: 0.2500, sse=217923.5, rms=1.670 (2.492%) 015: dt: 0.1250, sse=201570.7, rms=1.456 (12.770%) rms = 1.4182/1.4564, sse=198931.9/201570.7, time step reduction 3 of 3 to 0.062 0 0 1 016: dt: 0.1250, sse=198931.9, rms=1.418 (2.625%) maximum number of reductions reached, breaking from loop positioning took 1.1 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5984 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6063, nmarked2=0, nripped=6063 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 12 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 62.0000000; outside_low = 52.4100650; outside_hi = 113.8293000; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 1669960 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=1 had to be increased for 80 vertices, nripped=6075 mean border=80.7, 31 (0) missing vertices, mean dist -0.2 [0.3 (%80.9)->0.3 (%19.1))] %91 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0987 min Finding expansion regions mean absolute distance = 0.27 +- 0.35 2781 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=bbs96, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=980336.2, rms=5.629 017: dt: 0.5000, sse=530082.3, rms=3.673 (34.738%) rms = 4.0511/3.6733, sse=600006.0/530082.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 018: dt: 0.2500, sse=350547.5, rms=2.508 (31.715%) 019: dt: 0.2500, sse=282592.0, rms=1.883 (24.947%) 020: dt: 0.2500, sse=256652.3, rms=1.579 (16.142%) 021: dt: 0.2500, sse=248428.1, rms=1.469 (6.933%) 022: dt: 0.2500, sse=244032.0, rms=1.404 (4.407%) rms = 1.3685/1.4045, sse=242393.1/244032.0, time step reduction 2 of 3 to 0.125 0 0 1 023: dt: 0.2500, sse=242393.1, rms=1.368 (2.564%) 024: dt: 0.1250, sse=231745.3, rms=1.203 (12.095%) rms = 1.1779/1.2030, sse=230546.1/231745.3, time step reduction 3 of 3 to 0.062 0 0 1 025: dt: 0.1250, sse=230546.1, rms=1.178 (2.085%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6075 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6149, nmarked2=0, nripped=6149 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 23 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 62.0000000; outside_low = 52.4100650; outside_hi = 113.8293000; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 1834084 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 63 vertices, nripped=6172 mean border=82.6, 44 (0) missing vertices, mean dist -0.1 [0.2 (%69.7)->0.2 (%30.3))] %93 local maxima, % 2 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0551 min Finding expansion regions mean absolute distance = 0.17 +- 0.27 2787 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=bbs96, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=392819.9, rms=2.835 rms = 3.3804/2.8347, sse=483461.3/392819.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 026: dt: 0.2500, sse=276744.7, rms=1.821 (35.765%) 027: dt: 0.2500, sse=235280.4, rms=1.242 (31.778%) rms = 1.1916/1.2422, sse=240424.3/235280.4, time step reduction 2 of 3 to 0.125 0 1 0 028: dt: 0.2500, sse=240424.3, rms=1.192 (4.077%) 029: dt: 0.1250, sse=221446.2, rms=1.049 (11.965%) rms = 1.0301/1.0490, sse=220577.6/221446.2, time step reduction 3 of 3 to 0.062 0 0 1 030: dt: 0.1250, sse=220577.6, rms=1.030 (1.802%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6172 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6218, nmarked2=0, nripped=6218 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 13 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 62.0000000; outside_low = 52.4100650; outside_hi = 113.8293000; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 1908788 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 92 vertices, nripped=6231 mean border=83.2, 58 (0) missing vertices, mean dist -0.0 [0.2 (%55.1)->0.2 (%44.9))] %94 local maxima, % 2 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0354 min Finding expansion regions mean absolute distance = 0.16 +- 0.24 3131 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=bbs96, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=237766.3, rms=1.348 rms = 1.9995/1.3483, sse=297181.0/237766.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 031: dt: 0.2500, sse=212665.9, rms=0.893 (33.790%) 032: dt: 0.2500, sse=208824.4, rms=0.791 (11.395%) rms = 0.8038/0.7910, sse=209512.8/208824.4, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step rms = 0.7777/0.7910, sse=208331.8/208824.4, time step reduction 3 of 3 to 0.062 0 0 1 033: dt: 0.1250, sse=208331.8, rms=0.778 (1.673%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.87 minutes Writing output to ../surf/lh.white.preaparc #VMPC# mris_place_surfaces VmPeak 1975500 mris_place_surface done @#@FSTIME 2025:10:22:10:51:28 mris_place_surface N 25 e 178.13 S 0.89 U 177.23 P 99% M 1717568 F 0 R 452039 W 0 c 278 w 1 I 0 O 11360 L 24.47 24.25 23.71 @#@FSLOADPOST 2025:10:22:10:54:26 mris_place_surface N 25 24.40 24.30 23.83 #-------------------------------------------- #@# WhitePreAparc rh Wed Oct 22 10:54:26 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz 8.0.0 8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --restore-255 --nsmooth 5 --rip-bg-no-annot --rip-bg --rip-bg-lof --restore-255 --outvol mrisps.wpa.mgz Reading in input surface ../surf/rh.orig Smoothing surface before ripping with 5 iterations Area 258754 0.26675 0.06412 0.002332 0.5668 Corner 776262 60.00000 9.77863 11.270422 139.7520 Edge 388131 0.78881 0.11628 0.063172 1.3558 Hinge 388131 6.43736 6.72344 0.000025 135.4113 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 987 MRIclipBrightWM(): nthresh=25388, wmmin=5, clip=110 MRIfindBrightNonWM(): 759 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 987 Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 #FML# MRISripMidline(): nmarked=5793, nmarked2=0, nripped=5793 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 101 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 64690: xyz = (57.5917,-1.0924,37.5791) oxyz = (57.5917,-1.0924,37.5791) wxzy = (57.5917,-1.0924,37.5791) pxyz = (0,0,0) CBVO Creating mask 129379 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5894 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=5945, nmarked2=0, nripped=5945 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 0 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 61.0000000; outside_low = 51.4100650; outside_hi = 113.8293000; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 769992 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=2 had to be increased for 85 vertices, nripped=5945 mean border=76.1, 20 (20) missing vertices, mean dist 0.3 [0.4 (%38.4)->0.7 (%61.6))] %85 local maxima, %10 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1456 min Finding expansion regions mean absolute distance = 0.59 +- 0.65 4878 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=bbs96, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=3712217.8, rms=12.024 001: dt: 0.5000, sse=1892830.2, rms=8.432 (29.874%) 002: dt: 0.5000, sse=1206572.1, rms=6.584 (21.919%) 003: dt: 0.5000, sse=890321.0, rms=5.523 (16.112%) 004: dt: 0.5000, sse=732691.9, rms=4.908 (11.130%) 005: dt: 0.5000, sse=643009.8, rms=4.514 (8.033%) 006: dt: 0.5000, sse=599088.2, rms=4.311 (4.502%) 007: dt: 0.5000, sse=572103.5, rms=4.175 (3.139%) 008: dt: 0.5000, sse=559111.8, rms=4.108 (1.610%) rms = 4.0601/4.1081, sse=550880.2/559111.8, time step reduction 1 of 3 to 0.250 0 0 1 009: dt: 0.5000, sse=550880.2, rms=4.060 (1.170%) 010: dt: 0.2500, sse=292136.5, rms=2.430 (40.157%) 011: dt: 0.2500, sse=245057.4, rms=1.996 (17.853%) 012: dt: 0.2500, sse=233259.8, rms=1.868 (6.410%) 013: dt: 0.2500, sse=224651.6, rms=1.769 (5.286%) rms = 1.7195/1.7692, sse=220727.3/224651.6, time step reduction 2 of 3 to 0.125 0 0 1 014: dt: 0.2500, sse=220727.3, rms=1.720 (2.807%) 015: dt: 0.1250, sse=205477.5, rms=1.526 (11.276%) rms = 1.4917/1.5257, sse=203201.7/205477.5, time step reduction 3 of 3 to 0.062 0 0 1 016: dt: 0.1250, sse=203201.7, rms=1.492 (2.223%) maximum number of reductions reached, breaking from loop positioning took 1.1 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5945 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6029, nmarked2=0, nripped=6029 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 24 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 61.0000000; outside_low = 51.4100650; outside_hi = 113.8293000; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 1642872 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=1 had to be increased for 73 vertices, nripped=6053 mean border=80.2, 26 (0) missing vertices, mean dist -0.2 [0.3 (%80.3)->0.3 (%19.7))] %91 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1006 min Finding expansion regions mean absolute distance = 0.28 +- 0.36 3275 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=bbs96, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1012746.3, rms=5.760 017: dt: 0.5000, sse=549133.6, rms=3.793 (34.159%) rms = 4.1000/3.7928, sse=607976.0/549133.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 018: dt: 0.2500, sse=370883.9, rms=2.675 (29.475%) 019: dt: 0.2500, sse=292000.4, rms=1.993 (25.498%) 020: dt: 0.2500, sse=262126.7, rms=1.647 (17.371%) 021: dt: 0.2500, sse=251444.7, rms=1.515 (7.988%) rms = 1.4276/1.5151, sse=252499.3/251444.7, time step reduction 2 of 3 to 0.125 0 1 0 022: dt: 0.2500, sse=252499.3, rms=1.428 (5.776%) 023: dt: 0.1250, sse=235537.8, rms=1.244 (12.884%) rms = 1.2095/1.2437, sse=234761.6/235537.8, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=234761.6, rms=1.209 (2.749%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6053 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6151, nmarked2=0, nripped=6151 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 17 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 61.0000000; outside_low = 51.4100650; outside_hi = 113.8293000; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 1785152 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 64 vertices, nripped=6168 mean border=82.3, 38 (0) missing vertices, mean dist -0.1 [0.2 (%70.0)->0.2 (%30.0))] %93 local maxima, % 2 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0567 min Finding expansion regions mean absolute distance = 0.18 +- 0.27 3143 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=bbs96, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=425393.5, rms=3.052 rms = 3.4023/3.0523, sse=484030.9/425393.5, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=299340.0, rms=2.054 (32.701%) 026: dt: 0.2500, sse=246099.3, rms=1.354 (34.079%) 027: dt: 0.2500, sse=232276.2, rms=1.230 (9.188%) rms = 1.1861/1.2297, sse=229578.9/232276.2, time step reduction 2 of 3 to 0.125 0 0 1 028: dt: 0.2500, sse=229578.9, rms=1.186 (3.547%) 029: dt: 0.1250, sse=222588.4, rms=1.063 (10.345%) rms = 1.0458/1.0634, sse=221164.4/222588.4, time step reduction 3 of 3 to 0.062 0 0 1 030: dt: 0.1250, sse=221164.4, rms=1.046 (1.659%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6168 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6199, nmarked2=0, nripped=6199 Ripping BG MRISripBasalGanglia(): 0 -2 2 0.5 MRISripBasalGanglia(): 0 -2 2 0.5 ripped 3 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 61.0000000; outside_low = 51.4100650; outside_hi = 113.8293000; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 1897784 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 102 vertices, nripped=6202 mean border=82.8, 48 (0) missing vertices, mean dist -0.0 [0.2 (%55.1)->0.2 (%44.9))] %94 local maxima, % 1 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0364 min Finding expansion regions mean absolute distance = 0.16 +- 0.24 3031 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=bbs96, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=237790.5, rms=1.353 rms = 1.9872/1.3529, sse=295515.7/237790.5, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 031: dt: 0.2500, sse=213098.8, rms=0.897 (33.670%) 032: dt: 0.2500, sse=209301.2, rms=0.785 (12.565%) rms = 0.8052/0.7846, sse=208507.1/209301.2, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 0.7765/0.7846, sse=208712.7/209301.2, time step reduction 3 of 3 to 0.062 0 0 1 033: dt: 0.1250, sse=208712.7, rms=0.776 (1.039%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.84 minutes Writing output to ../surf/rh.white.preaparc #VMPC# mris_place_surfaces VmPeak 1966980 mris_place_surface done @#@FSTIME 2025:10:22:10:54:26 mris_place_surface N 25 e 175.75 S 0.92 U 174.78 P 99% M 1709620 F 0 R 450194 W 0 c 365 w 4 I 0 O 11304 L 24.40 24.30 23.83 @#@FSLOADPOST 2025:10:22:10:57:21 mris_place_surface N 25 24.21 24.26 23.91 #-------------------------------------------- #@# CortexLabel lh Wed Oct 22 10:57:22 CDT 2025 Wed Oct 22 10:57:22 CDT 2025 setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /usr/local/freesurfer/8.0.0/bin/label-cortex --s sub-01EN91PG_ses-00A --lh --fix-ga -rwxr-xr-x 1 root root 14140 Feb 3 2025 /usr/local/freesurfer/8.0.0/bin/label-cortex freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a $Id$ Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux pid 102388 mri_label2label --label-cortex /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white.preaparc /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/aseg.presurf.mgz 0 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.cortex-no-ga.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 3 non-cortical segments detected only using segment with 7216 vertices erasing segment 1 (vno[0] = 64368) erasing segment 2 (vno[0] = 75086) mri_binarize --match 3201 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/entowm.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/gyrus-ambiens.lh.mgz 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri cmdline mri_binarize --match 3201 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/entowm.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/gyrus-ambiens.lh.mgz sysname Linux hostname bbs96787.local machine x86_64 user kate input /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/entowm.mgz frame 0 nErode3d 0 nErode2d 0 output /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/gyrus-ambiens.lh.mgz Binarizing based on matching values nMatch 1 0 3201 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 184 values in range Counting number of voxels in first frame Found 184 voxels in final mask Writing output to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/gyrus-ambiens.lh.mgz Count: 184 184.000000 16777216 0.001097 mri_binarize done mri_vol2surf --regheader sub-01EN91PG_ses-00A --hemi lh --surf white.preaparc --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/gyrus-ambiens.lh.mgz --projdist-max -1 0 .1 --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.mgz INFO: Delta=0.1 > Max=0, may be ok, maybe not srcvol = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/gyrus-ambiens.lh.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white.preaparc hemi = lh ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 1 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white.preaparc Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 0 0.1 1 -1 -1 0 using old 2 -0.9 -1 0 using old 3 -0.8 -1 0 using old 4 -0.7 -1 0 using old 5 -0.6 -1 0 using old 6 -0.5 -1 0 using old 7 -0.4 -1 0 using old 8 -0.3 -1 0 using old 9 -0.2 -1 0 using old 10 -0.0999999 -1 0 using old Done mapping volume to surface Number of source voxels hit = 88213 Writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.mgz Dim: 130161 1 1 mri_vol2surf done mris_convert --to-scanner -n /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white.preaparc /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.white.preaparc.nxyz.mgz mris_convert --to-scanner -n /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white.preaparc /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.white.preaparc.nxyz.mgz Reading in /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white.preaparc Converting surface XYZ coordinates from tkr to scanner space. Outputting normals /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.white.preaparc.nxyz.mgz mri_binarize --frame 0 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.white.preaparc.nxyz.mgz --mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nx.mask.mgz --min +0.01 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri cmdline mri_binarize --frame 0 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.white.preaparc.nxyz.mgz --mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nx.mask.mgz --min +0.01 sysname Linux hostname bbs96787.local machine x86_64 user kate input /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.white.preaparc.nxyz.mgz frame 0 nErode3d 0 nErode2d 0 output /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nx.mask.mgz Binarizing based on threshold min 0.01 max +infinity binval 1 binvalnot 0 mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.mgz fstart = 0, fend = 0, nframes = 1 Found 211 values in range Counting number of voxels in first frame Found 211 voxels in final mask Writing output to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nx.mask.mgz Count: 211 211.000000 130161 0.162107 mri_binarize done mri_binarize --frame 2 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.white.preaparc.nxyz.mgz --mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nz.mask.mgz --max -0.01 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri cmdline mri_binarize --frame 2 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.white.preaparc.nxyz.mgz --mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nz.mask.mgz --max -0.01 sysname Linux hostname bbs96787.local machine x86_64 user kate input /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.white.preaparc.nxyz.mgz frame 2 nErode3d 0 nErode2d 0 output /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nz.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.mgz fstart = 2, fend = 2, nframes = 1 Found 195 values in range Counting number of voxels in first frame Found 195 voxels in final mask Writing output to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nz.mask.mgz Count: 195 195.000000 130161 0.149814 mri_binarize done fscalc /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nx.mask.mgz and /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nz.mask.mgz -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.lat.mask.mgz Wed Oct 22 10:57:35 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /usr/local/freesurfer/8.0.0/bin/fscalc /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nx.mask.mgz and /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nz.mask.mgz -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.lat.mask.mgz freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nx.mask.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/tmp.sNCkCP/tmp.mgh mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nx.mask.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/tmp.sNCkCP/tmp.mgh reading from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nx.mask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/tmp.sNCkCP/tmp.mgh... ---------------------- mris_calc -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/tmp.sNCkCP/tmp.mgh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/tmp.sNCkCP/tmp.mgh and /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.nz.mask.mgz Packing Done packing Packing Done packing Unpacking Saving result to '/mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/tmp.sNCkCP/tmp.mgh' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 18920 ---------------------- mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/tmp.sNCkCP/tmp.mgh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.lat.mask.mgz mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/tmp.sNCkCP/tmp.mgh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.lat.mask.mgz reading from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/tmp.sNCkCP/tmp.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.lat.mask.mgz... mri_cor2label --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.lat.mask.mgz --l /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.med.label --surf-path /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white.preaparc --id 1 --thresh 0.5 Loading mri /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.lat.mask.mgz 8.0.0 ------- Vox2RAS of input volume ----------- -1.00000 0.00000 0.00000 65080.50000; 0.00000 0.00000 1.00000 -0.50000; 0.00000 -1.00000 0.00000 0.50000; 0.00000 0.00000 0.00000 1.00000; Scanning the volume mri_cor2label completed SUCCESSFULLY Loading surf /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white.preaparc Found 139 label voxels Writing label file /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.med.label Centroid: -17.11 -0.97 5.12 mri_mergelabels -i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.cortex-no-ga.label -i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.102388/lh.gyrus-ambiens.med.label -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Done To view results, run fsvglrun freeview -f /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white.preaparc:label=/mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Started at Wed Oct 22 10:57:22 CDT 2025 Ended at Wed Oct 22 10:57:36 CDT 2025 Label-Cortex-Run-Time-Sec 14 Label-Cortex-Run-Time-Min 0.23 Label-Cortex-Run-Time-Hours 0.00 label-cortex Done @#@FSTIME 2025:10:22:10:57:22 label-cortex N 4 e 14.30 S 0.85 U 13.44 P 99% M 349856 F 0 R 337319 W 0 c 81 w 465 I 0 O 26384 L 24.21 24.26 23.91 @#@FSLOADPOST 2025:10:22:10:57:36 label-cortex N 4 24.32 24.28 23.92 #-------------------------------------------- #@# CortexLabel+HipAmyg lh Wed Oct 22 10:57:36 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_label2label --label-cortex ../surf/lh.white.preaparc aseg.presurf.mgz 1 ../label/lh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 4 non-cortical segments detected only using segment with 5021 vertices erasing segment 1 (vno[0] = 43442) erasing segment 2 (vno[0] = 64368) erasing segment 3 (vno[0] = 75086) @#@FSTIME 2025:10:22:10:57:36 mri_label2label N 5 e 9.56 S 0.17 U 9.38 P 99% M 307428 F 0 R 91318 W 0 c 20 w 1 I 0 O 10808 L 24.32 24.28 23.92 @#@FSLOADPOST 2025:10:22:10:57:45 mri_label2label N 5 24.27 24.27 23.92 #-------------------------------------------- #@# CortexLabel rh Wed Oct 22 10:57:45 CDT 2025 Wed Oct 22 10:57:45 CDT 2025 setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /usr/local/freesurfer/8.0.0/bin/label-cortex --s sub-01EN91PG_ses-00A --rh --fix-ga -rwxr-xr-x 1 root root 14140 Feb 3 2025 /usr/local/freesurfer/8.0.0/bin/label-cortex freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a $Id$ Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux pid 103693 mri_label2label --label-cortex /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white.preaparc /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/aseg.presurf.mgz 0 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.cortex-no-ga.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 5 non-cortical segments detected only using segment with 7166 vertices erasing segment 1 (vno[0] = 62245) erasing segment 2 (vno[0] = 73680) erasing segment 3 (vno[0] = 74557) erasing segment 4 (vno[0] = 79225) mri_binarize --match 4201 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/entowm.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/gyrus-ambiens.rh.mgz 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri cmdline mri_binarize --match 4201 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/entowm.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/gyrus-ambiens.rh.mgz sysname Linux hostname bbs96787.local machine x86_64 user kate input /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/entowm.mgz frame 0 nErode3d 0 nErode2d 0 output /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/gyrus-ambiens.rh.mgz Binarizing based on matching values nMatch 1 0 4201 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 208 values in range Counting number of voxels in first frame Found 208 voxels in final mask Writing output to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/gyrus-ambiens.rh.mgz Count: 208 208.000000 16777216 0.001240 mri_binarize done mri_vol2surf --regheader sub-01EN91PG_ses-00A --hemi rh --surf white.preaparc --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/gyrus-ambiens.rh.mgz --projdist-max -1 0 .1 --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.mgz INFO: Delta=0.1 > Max=0, may be ok, maybe not srcvol = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/gyrus-ambiens.rh.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white.preaparc hemi = rh ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 1 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white.preaparc Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 0 0.1 1 -1 -1 0 using old 2 -0.9 -1 0 using old 3 -0.8 -1 0 using old 4 -0.7 -1 0 using old 5 -0.6 -1 0 using old 6 -0.5 -1 0 using old 7 -0.4 -1 0 using old 8 -0.3 -1 0 using old 9 -0.2 -1 0 using old 10 -0.0999999 -1 0 using old Done mapping volume to surface Number of source voxels hit = 87676 Writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.mgz Dim: 129379 1 1 mri_vol2surf done mris_convert --to-scanner -n /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white.preaparc /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.white.preaparc.nxyz.mgz mris_convert --to-scanner -n /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white.preaparc /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.white.preaparc.nxyz.mgz Reading in /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white.preaparc Converting surface XYZ coordinates from tkr to scanner space. Outputting normals /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.white.preaparc.nxyz.mgz mri_binarize --frame 0 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.white.preaparc.nxyz.mgz --mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nx.mask.mgz --max -0.01 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri cmdline mri_binarize --frame 0 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.white.preaparc.nxyz.mgz --mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nx.mask.mgz --max -0.01 sysname Linux hostname bbs96787.local machine x86_64 user kate input /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.white.preaparc.nxyz.mgz frame 0 nErode3d 0 nErode2d 0 output /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nx.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.mgz fstart = 0, fend = 0, nframes = 1 Found 261 values in range Counting number of voxels in first frame Found 261 voxels in final mask Writing output to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nx.mask.mgz Count: 261 261.000000 129379 0.201733 mri_binarize done mri_binarize --frame 2 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.white.preaparc.nxyz.mgz --mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nz.mask.mgz --max -0.01 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri cmdline mri_binarize --frame 2 --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.white.preaparc.nxyz.mgz --mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.mgz --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nz.mask.mgz --max -0.01 sysname Linux hostname bbs96787.local machine x86_64 user kate input /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.white.preaparc.nxyz.mgz frame 2 nErode3d 0 nErode2d 0 output /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nz.mask.mgz Binarizing based on threshold min -infinity max -0.01 binval 1 binvalnot 0 mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.mgz maskthresh 0.500000 Loading mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.mgz fstart = 2, fend = 2, nframes = 1 Found 241 values in range Counting number of voxels in first frame Found 241 voxels in final mask Writing output to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nz.mask.mgz Count: 241 241.000000 129379 0.186274 mri_binarize done fscalc /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nx.mask.mgz and /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nz.mask.mgz -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.lat.mask.mgz Wed Oct 22 10:57:58 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /usr/local/freesurfer/8.0.0/bin/fscalc /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nx.mask.mgz and /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nz.mask.mgz -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.lat.mask.mgz freesurfer-linux-ubuntu22_x86_64-8.0.0-20250204-0f2bd3a Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nx.mask.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/tmp.oKos5w/tmp.mgh mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nx.mask.mgz /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/tmp.oKos5w/tmp.mgh reading from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nx.mask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/tmp.oKos5w/tmp.mgh... ---------------------- mris_calc -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/tmp.oKos5w/tmp.mgh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/tmp.oKos5w/tmp.mgh and /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.nz.mask.mgz Packing Done packing Packing Done packing Unpacking Saving result to '/mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/tmp.oKos5w/tmp.mgh' (type = MGH ) [ ok ] #VMPC# mris_calc VmPeak 18908 ---------------------- mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/tmp.oKos5w/tmp.mgh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.lat.mask.mgz mri_convert /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/tmp.oKos5w/tmp.mgh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.lat.mask.mgz reading from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/tmp.oKos5w/tmp.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.lat.mask.mgz... mri_cor2label --i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.lat.mask.mgz --l /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.med.label --surf-path /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white.preaparc --id 1 --thresh 0.5 Loading mri /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.lat.mask.mgz 8.0.0 ------- Vox2RAS of input volume ----------- -1.00000 0.00000 0.00000 64689.50000; 0.00000 0.00000 1.00000 -0.50000; 0.00000 -1.00000 0.00000 0.50000; 0.00000 0.00000 0.00000 1.00000; Scanning the volume mri_cor2label completed SUCCESSFULLY Loading surf /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white.preaparc Found 186 label voxels Writing label file /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.med.label Centroid: 15.30 2.64 2.36 mri_mergelabels -i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.cortex-no-ga.label -i /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/tmpdir.label-cortex.103693/rh.gyrus-ambiens.med.label -o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Done To view results, run fsvglrun freeview -f /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white.preaparc:label=/mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Started at Wed Oct 22 10:57:45 CDT 2025 Ended at Wed Oct 22 10:57:59 CDT 2025 Label-Cortex-Run-Time-Sec 14 Label-Cortex-Run-Time-Min 0.23 Label-Cortex-Run-Time-Hours 0.00 label-cortex Done @#@FSTIME 2025:10:22:10:57:45 label-cortex N 4 e 13.62 S 0.81 U 12.80 P 99% M 348644 F 1 R 343595 W 0 c 75 w 460 I 0 O 25744 L 24.27 24.27 23.92 @#@FSLOADPOST 2025:10:22:10:57:59 label-cortex N 4 24.29 24.27 23.93 #-------------------------------------------- #@# CortexLabel+HipAmyg rh Wed Oct 22 10:57:59 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_label2label --label-cortex ../surf/rh.white.preaparc aseg.presurf.mgz 1 ../label/rh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 8 non-cortical segments detected only using segment with 4799 vertices erasing segment 1 (vno[0] = 42278) erasing segment 2 (vno[0] = 48170) erasing segment 3 (vno[0] = 50929) erasing segment 4 (vno[0] = 62245) erasing segment 5 (vno[0] = 73680) erasing segment 6 (vno[0] = 74557) erasing segment 7 (vno[0] = 79225) @#@FSTIME 2025:10:22:10:57:59 mri_label2label N 5 e 9.27 S 0.18 U 9.09 P 100% M 324580 F 0 R 96129 W 0 c 16 w 1 I 0 O 10520 L 24.29 24.27 23.93 @#@FSLOADPOST 2025:10:22:10:58:08 mri_label2label N 5 24.49 24.31 23.95 #-------------------------------------------- #@# Smooth2 lh Wed Oct 22 10:58:08 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2025:10:22:10:58:08 mris_smooth N 7 e 2.29 S 0.13 U 2.15 P 99% M 199916 F 0 R 59652 W 0 c 7 w 1 I 0 O 9160 L 24.49 24.31 23.95 @#@FSLOADPOST 2025:10:22:10:58:11 mris_smooth N 7 24.49 24.31 23.95 #-------------------------------------------- #@# Smooth2 rh Wed Oct 22 10:58:11 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2025:10:22:10:58:11 mris_smooth N 7 e 2.34 S 0.13 U 2.18 P 98% M 199036 F 0 R 59318 W 0 c 4 w 4 I 0 O 9104 L 24.49 24.31 23.95 @#@FSLOADPOST 2025:10:22:10:58:13 mris_smooth N 7 24.45 24.31 23.95 #-------------------------------------------- #@# Inflation2 lh Wed Oct 22 10:58:13 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated Reading ../surf/lh.smoothwm avg radius = 44.2 mm, total surface area = 80927 mm^2 step 000: RMS=0.171 (target=0.015) step 005: RMS=0.115 (target=0.015) step 010: RMS=0.086 (target=0.015) step 015: RMS=0.073 (target=0.015) step 020: RMS=0.061 (target=0.015) step 025: RMS=0.050 (target=0.015) step 030: RMS=0.041 (target=0.015) step 035: RMS=0.034 (target=0.015) step 040: RMS=0.028 (target=0.015) step 045: RMS=0.025 (target=0.015) step 050: RMS=0.022 (target=0.015) step 055: RMS=0.020 (target=0.015) step 060: RMS=0.019 (target=0.015) writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc inflation complete. inflation took 0.3 minutes mris_inflate utimesec 16.362917 mris_inflate stimesec 0.086994 mris_inflate ru_maxrss 200288 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 52877 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 10184 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 0 mris_inflate ru_nivcsw 29 @#@FSTIME 2025:10:22:10:58:13 mris_inflate N 2 e 16.46 S 0.10 U 16.36 P 99% M 200288 F 0 R 52884 W 0 c 29 w 1 I 0 O 10184 L 24.45 24.31 23.95 @#@FSLOADPOST 2025:10:22:10:58:30 mris_inflate N 2 24.51 24.33 23.96 #-------------------------------------------- #@# Inflation2 rh Wed Oct 22 10:58:30 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated Reading ../surf/rh.smoothwm avg radius = 44.7 mm, total surface area = 80580 mm^2 step 000: RMS=0.171 (target=0.015) step 005: RMS=0.116 (target=0.015) step 010: RMS=0.087 (target=0.015) step 015: RMS=0.073 (target=0.015) step 020: RMS=0.061 (target=0.015) step 025: RMS=0.050 (target=0.015) step 030: RMS=0.041 (target=0.015) step 035: RMS=0.034 (target=0.015) step 040: RMS=0.029 (target=0.015) step 045: RMS=0.025 (target=0.015) step 050: RMS=0.023 (target=0.015) step 055: RMS=0.021 (target=0.015) step 060: RMS=0.019 (target=0.015) writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc inflation complete. inflation took 0.3 minutes mris_inflate utimesec 16.594567 mris_inflate stimesec 1.077906 mris_inflate ru_maxrss 199512 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 501467 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 10120 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 0 mris_inflate ru_nivcsw 35 @#@FSTIME 2025:10:22:10:58:30 mris_inflate N 2 e 17.68 S 1.09 U 16.59 P 99% M 199512 F 0 R 501475 W 0 c 35 w 1 I 0 O 10120 L 24.51 24.33 23.96 @#@FSLOADPOST 2025:10:22:10:58:47 mris_inflate N 2 24.39 24.31 23.96 #-------------------------------------------- #@# Curv .H and .K lh Wed Oct 22 10:58:47 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf mris_curvature -w -seed 1234 lh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 10.710*4pi (134.582) --> -10 handles ICI = 128.4, FI = 1460.6, variation=22460.697 writing Gaussian curvature to ./lh.white.preaparc.K... done. writing mean curvature to ./lh.white.preaparc.H... lh.white.preaparc.H mris_curvature done. @#@FSTIME 2025:10:22:10:58:47 mris_curvature N 4 e 1.24 S 0.09 U 1.11 P 96% M 149592 F 0 R 40140 W 0 c 8 w 3 I 0 O 3072 L 24.39 24.31 23.96 @#@FSLOADPOST 2025:10:22:10:58:49 mris_curvature N 4 24.36 24.30 23.96 rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 217 vertices thresholded to be in k1 ~ [-0.21 0.25], k2 ~ [-0.12 0.06] total integrated curvature = 0.657*4pi (8.250) --> 0 handles ICI = 1.6, FI = 8.6, variation=152.254 122 vertices thresholded to be in [-0.01 0.02] writing Gaussian curvature to ./lh.inflated.K... thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 146 vertices thresholded to be in [-0.14 0.13] done. writing mean curvature to ./lh.inflated.H... curvature mean = -0.017, std = 0.022 lh.inflated.H mris_curvature done. @#@FSTIME 2025:10:22:10:58:49 mris_curvature N 12 e 33.89 S 0.26 U 33.58 P 99% M 352348 F 0 R 91100 W 0 c 59 w 4 I 0 O 3072 L 24.36 24.30 23.96 @#@FSLOADPOST 2025:10:22:10:59:23 mris_curvature N 12 24.27 24.29 23.97 #-------------------------------------------- #@# Curv .H and .K rh Wed Oct 22 10:59:23 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf mris_curvature -w -seed 1234 rh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 14.862*4pi (186.765) --> -14 handles ICI = 131.0, FI = 1473.8, variation=22650.611 writing Gaussian curvature to ./rh.white.preaparc.K... done. writing mean curvature to ./rh.white.preaparc.H... rh.white.preaparc.H mris_curvature done. @#@FSTIME 2025:10:22:10:59:23 mris_curvature N 4 e 1.25 S 0.09 U 1.12 P 97% M 147764 F 0 R 40473 W 0 c 3 w 4 I 0 O 3048 L 24.27 24.29 23.97 @#@FSLOADPOST 2025:10:22:10:59:24 mris_curvature N 4 24.25 24.28 23.97 rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 193 vertices thresholded to be in k1 ~ [-0.23 0.33], k2 ~ [-0.11 0.06] total integrated curvature = 0.599*4pi (7.525) --> 0 handles ICI = 1.5, FI = 9.6, variation=161.787 109 vertices thresholded to be in [-0.01 0.02] writing Gaussian curvature to ./rh.inflated.K... thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 140 vertices thresholded to be in [-0.14 0.16] done. writing mean curvature to ./rh.inflated.H... curvature mean = -0.017, std = 0.023 rh.inflated.H mris_curvature done. @#@FSTIME 2025:10:22:10:59:24 mris_curvature N 12 e 33.84 S 0.22 U 33.54 P 99% M 350852 F 0 R 91158 W 0 c 56 w 5 I 0 O 3048 L 24.25 24.28 23.97 @#@FSLOADPOST 2025:10:22:10:59:58 mris_curvature N 12 24.15 24.26 23.97 #-------------------------------------------- #@# Sphere lh Wed Oct 22 10:59:58 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_sphere -threads 1 -seed 1234 ../surf/lh.inflated ../surf/lh.sphere Setting OMP_NUM_THREADS=1 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.288... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=bbs96, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.44 pass 1: epoch 2 of 3 starting distance error %20.31 unfolding complete - removing small folds... starting distance error %20.23 removing remaining folds... final distance error %20.23 MRISunfold() return, current seed 1234 -01: dt=0.0000, 155 negative triangles VmPeak 524616 097: dt=0.9900, 155 negative triangles 098: dt=0.9900, 35 negative triangles 099: dt=0.9900, 11 negative triangles 100: dt=0.9900, 10 negative triangles 101: dt=0.9900, 6 negative triangles 102: dt=0.9900, 9 negative triangles 103: dt=0.9900, 4 negative triangles 104: dt=0.9900, 2 negative triangles 105: dt=0.9900, 2 negative triangles 106: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/lh.sphere spherical transformation took 0.0836 hours FSRUNTIME@ mris_sphere 0.0836 hours 1 threads #VMPC# mris_sphere VmPeak 524616 mris_sphere done @#@FSTIME 2025:10:22:10:59:58 mris_sphere N 6 e 300.90 S 15.11 U 285.76 P 99% M 268280 F 0 R 6809218 W 0 c 433 w 1 I 0 O 9160 L 24.15 24.26 23.97 @#@FSLOADPOST 2025:10:22:11:04:59 mris_sphere N 6 24.16 24.19 24.02 #-------------------------------------------- #@# Sphere rh Wed Oct 22 11:04:59 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_sphere -threads 1 -seed 1234 ../surf/rh.inflated ../surf/rh.sphere Setting OMP_NUM_THREADS=1 setting seed for random number genererator to 1234 version: 8.0.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.284... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=bbs96, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 singular matrix in quadratic form -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.56 pass 1: epoch 2 of 3 starting distance error %20.51 unfolding complete - removing small folds... starting distance error %20.45 removing remaining folds... final distance error %20.48 MRISunfold() return, current seed 1234 -01: dt=0.0000, 9 negative triangles VmPeak 523044 180: dt=0.9900, 9 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.1336 hours FSRUNTIME@ mris_sphere 0.1336 hours 1 threads #VMPC# mris_sphere VmPeak 523044 mris_sphere done @#@FSTIME 2025:10:22:11:04:59 mris_sphere N 6 e 480.89 S 29.82 U 451.04 P 99% M 266900 F 0 R 12962453 W 0 c 856 w 1 I 0 O 9104 L 24.16 24.19 24.02 @#@FSLOADPOST 2025:10:22:11:13:00 mris_sphere N 6 24.16 24.14 24.04 #-------------------------------------------- #@# Surf Reg lh Wed Oct 22 11:13:00 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_register -curv -threads 1 ../surf/lh.sphere /usr/local/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts cmdline mris_register -curv -threads 1 ../surf/lh.sphere /usr/local/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 8.0.0 8.0.0 reading surface from ../surf/lh.sphere... reading template parameterization from /usr/local/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=bbs96, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=bbs96, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc tol=1.0e+00, sigma=0.5, host=bbs96, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = -0.000, std = 5.750 curvature mean = 0.033, std = 0.811 curvature mean = 0.014, std = 0.868 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (3.50, -1.00, 12.00) sse = 201518.8, elapsed since starting=0.2557 min MRISrigidBodyAlignGlobal() done 0.26 min curvature mean = 0.010, std = 0.846 curvature mean = 0.007, std = 0.950 curvature mean = 0.009, std = 0.857 curvature mean = 0.003, std = 0.981 curvature mean = 0.007, std = 0.860 curvature mean = 0.001, std = 0.993 2 Reading smoothwm curvature mean = -0.020, std = 0.285 curvature mean = 0.042, std = 0.248 curvature mean = 0.068, std = 0.344 curvature mean = 0.040, std = 0.305 curvature mean = 0.033, std = 0.541 curvature mean = 0.039, std = 0.332 curvature mean = 0.017, std = 0.681 curvature mean = 0.039, std = 0.344 curvature mean = 0.004, std = 0.793 MRISregister() return, current seed 0 writing registered surface to ../surf/lh.sphere.reg... -01: dt=0.0000, 0 negative triangles VmPeak 508700 registration took 0.09 hours #VMPC# mris_register VmPeak 508700 FSRUNTIME@ mris_register 0.0870 hours 1 threads @#@FSTIME 2025:10:22:11:13:00 mris_register N 6 e 313.17 S 16.33 U 296.81 P 99% M 253172 F 0 R 6934787 W 0 c 713 w 1 I 0 O 9160 L 24.16 24.14 24.04 @#@FSLOADPOST 2025:10:22:11:18:13 mris_register N 6 24.38 24.17 24.07 ln -sf lh.sphere.reg lh.fsaverage.sphere.reg #-------------------------------------------- #@# Surf Reg rh Wed Oct 22 11:18:13 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_register -curv -threads 1 ../surf/rh.sphere /usr/local/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts cmdline mris_register -curv -threads 1 ../surf/rh.sphere /usr/local/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 8.0.0 8.0.0 reading surface from ../surf/rh.sphere... reading template parameterization from /usr/local/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=bbs96, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=bbs96, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc tol=1.0e+00, sigma=0.5, host=bbs96, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = -0.000, std = 5.719 curvature mean = 0.047, std = 0.808 curvature mean = 0.010, std = 0.873 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (8.50, -1.50, 13.50) sse = 197216.0, elapsed since starting=0.2490 min MRISrigidBodyAlignGlobal() done 0.25 min curvature mean = 0.027, std = 0.825 curvature mean = 0.004, std = 0.953 curvature mean = 0.025, std = 0.836 curvature mean = 0.002, std = 0.982 curvature mean = 0.025, std = 0.839 curvature mean = 0.001, std = 0.993 2 Reading smoothwm curvature mean = -0.021, std = 0.287 curvature mean = 0.044, std = 0.240 curvature mean = 0.056, std = 0.359 curvature mean = 0.038, std = 0.298 curvature mean = 0.035, std = 0.540 curvature mean = 0.037, std = 0.324 curvature mean = 0.019, std = 0.676 curvature mean = 0.037, std = 0.336 curvature mean = 0.005, std = 0.786 MRISregister() return, current seed 0 writing registered surface to ../surf/rh.sphere.reg... -01: dt=0.0000, 0 negative triangles VmPeak 508252 registration took 0.09 hours #VMPC# mris_register VmPeak 508252 FSRUNTIME@ mris_register 0.0895 hours 1 threads @#@FSTIME 2025:10:22:11:18:13 mris_register N 6 e 322.07 S 17.41 U 304.64 P 99% M 252124 F 0 R 7429061 W 0 c 534 w 1 I 0 O 9104 L 24.38 24.17 24.07 @#@FSLOADPOST 2025:10:22:11:23:35 mris_register N 6 24.04 24.10 24.07 ln -sf rh.sphere.reg rh.fsaverage.sphere.reg #-------------------------------------------- #@# Jacobian white lh Wed Oct 22 11:23:35 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white.preaparc... writing curvature file ../surf/lh.jacobian_white type -1 @#@FSTIME 2025:10:22:11:23:35 mris_jacobian N 3 e 0.92 S 0.13 U 0.78 P 99% M 199340 F 0 R 59636 W 0 c 2 w 1 I 0 O 1024 L 24.04 24.10 24.07 @#@FSLOADPOST 2025:10:22:11:23:36 mris_jacobian N 3 24.04 24.10 24.07 #-------------------------------------------- #@# Jacobian white rh Wed Oct 22 11:23:36 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white.preaparc... writing curvature file ../surf/rh.jacobian_white type -1 @#@FSTIME 2025:10:22:11:23:36 mris_jacobian N 3 e 0.92 S 0.13 U 0.79 P 100% M 198504 F 0 R 59879 W 0 c 5 w 1 I 0 O 1016 L 24.04 24.10 24.07 @#@FSLOADPOST 2025:10:22:11:23:37 mris_jacobian N 3 24.04 24.10 24.07 #-------------------------------------------- #@# AvgCurv lh Wed Oct 22 11:23:37 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mrisp_paint -a 5 /usr/local/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /usr/local/freesurfer/8.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/lh.avg_curv... @#@FSTIME 2025:10:22:11:23:37 mrisp_paint N 5 e 0.76 S 0.09 U 0.66 P 99% M 154188 F 0 R 41383 W 0 c 4 w 1 I 0 O 1024 L 24.04 24.10 24.07 @#@FSLOADPOST 2025:10:22:11:23:38 mrisp_paint N 5 24.04 24.10 24.07 #-------------------------------------------- #@# AvgCurv rh Wed Oct 22 11:23:38 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mrisp_paint -a 5 /usr/local/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /usr/local/freesurfer/8.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/rh.avg_curv... @#@FSTIME 2025:10:22:11:23:38 mrisp_paint N 5 e 0.72 S 0.09 U 0.63 P 99% M 152932 F 0 R 41145 W 0 c 2 w 1 I 0 O 1016 L 24.04 24.10 24.07 @#@FSLOADPOST 2025:10:22:11:23:38 mrisp_paint N 5 24.12 24.11 24.07 #----------------------------------------- #@# Cortical Parc lh Wed Oct 22 11:23:38 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-01EN91PG_ses-00A lh ../surf/lh.sphere.reg /usr/local/freesurfer/8.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /usr/local/freesurfer/8.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.8 using min determinant for regularization = 0.006 0 singular and 342 ill-conditioned covariance matrices regularized reading surface from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1298 labels changed using aseg relabeling using gibbs priors... 000: 2993 changed, 130161 examined... 001: 693 changed, 12658 examined... 002: 160 changed, 3913 examined... 003: 50 changed, 967 examined... 004: 17 changed, 321 examined... 005: 9 changed, 111 examined... 006: 4 changed, 59 examined... 007: 3 changed, 27 examined... 008: 1 changed, 18 examined... 009: 1 changed, 8 examined... 010: 0 changed, 7 examined... 235 labels changed using aseg 000: 116 total segments, 68 labels (348 vertices) changed 001: 48 total segments, 1 labels (2 vertices) changed 002: 47 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 1 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1888 vertices marked for relabeling... 1887 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 9 seconds. @#@FSTIME 2025:10:22:11:23:38 mris_ca_label N 11 e 8.61 S 0.86 U 7.74 P 99% M 1196320 F 0 R 432939 W 0 c 13 w 1 I 0 O 2040 L 24.12 24.11 24.07 @#@FSLOADPOST 2025:10:22:11:23:47 mris_ca_label N 11 24.11 24.11 24.07 #----------------------------------------- #@# Cortical Parc rh Wed Oct 22 11:23:47 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-01EN91PG_ses-00A rh ../surf/rh.sphere.reg /usr/local/freesurfer/8.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /usr/local/freesurfer/8.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized reading surface from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1249 labels changed using aseg relabeling using gibbs priors... 000: 2643 changed, 129379 examined... 001: 581 changed, 11553 examined... 002: 124 changed, 3394 examined... 003: 41 changed, 779 examined... 004: 17 changed, 265 examined... 005: 7 changed, 108 examined... 006: 3 changed, 49 examined... 007: 4 changed, 18 examined... 008: 0 changed, 17 examined... 157 labels changed using aseg 000: 101 total segments, 64 labels (357 vertices) changed 001: 37 total segments, 0 labels (0 vertices) changed 8 filter iterations complete (10 requested, 0 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1707 vertices marked for relabeling... 1707 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 8 seconds. @#@FSTIME 2025:10:22:11:23:47 mris_ca_label N 11 e 8.10 S 0.70 U 7.39 P 99% M 1122352 F 0 R 347186 W 0 c 24 w 1 I 0 O 2032 L 24.11 24.11 24.07 @#@FSLOADPOST 2025:10:22:11:23:55 mris_ca_label N 11 24.09 24.10 24.07 #-------------------------------------------- #@# WhiteSurfs lh Wed Oct 22 11:23:55 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof 8.0.0 8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof Reading in input surface ../surf/lh.white.preaparc Not smoothing input surface Area 260318 0.34072 0.12575 0.000414 1.9731 Corner 780954 60.00000 14.72379 0.642733 176.8122 Edge 390477 0.89878 0.20829 0.005963 2.9961 Hinge 390477 10.00088 11.40433 0.000013 179.8840 Reading in aparc ../label/lh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 987 MRIclipBrightWM(): nthresh=25388, wmmin=5, clip=110 MRIfindBrightNonWM(): 759 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 987 Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex.label MRISripNotLabel() ripped 7456/130161 vertices (122705 unripped) Reading in ripping surface ../surf/lh.white.preaparc Reading in aparc ../label/lh.aparc.annot for ripsurf [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Ripping BG MRISripBasalGanglia(): 1 -2 2 0.5 Ripping lateralorbitofrontal MRISripBasalGanglia(): 1 -2 2 0.5 ripped 889 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 65081: xyz = (-52.5952,-2.58387,56.1679) oxyz = (-52.5952,-2.58387,56.1679) wxzy = (-52.5952,-2.58387,56.1679) pxyz = (0,0,0) CBVO Creating mask 130161 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 62.0000000; outside_low = 52.4100650; outside_hi = 113.8293000; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 826516 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=2 had to be increased for 101 vertices, nripped=8345 mean border=75.5, 26 (26) missing vertices, mean dist 0.4 [0.5 (%11.1)->0.5 (%88.9))] %80 local maxima, %14 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1353 min Finding expansion regions mean absolute distance = 0.49 +- 0.63 3118 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=bbs96, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=2268871.2, rms=9.241 001: dt: 0.5000, sse=810635.6, rms=5.067 (45.161%) 002: dt: 0.5000, sse=589580.8, rms=4.072 (19.653%) 003: dt: 0.5000, sse=553393.6, rms=3.879 (4.737%) 004: dt: 0.5000, sse=540803.8, rms=3.753 (3.243%) rms = 3.8018/3.7529, sse=550569.7/540803.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 005: dt: 0.2500, sse=344012.4, rms=2.437 (35.064%) 006: dt: 0.2500, sse=274725.9, rms=1.814 (25.582%) 007: dt: 0.2500, sse=254404.9, rms=1.559 (14.026%) 008: dt: 0.2500, sse=250706.5, rms=1.505 (3.481%) 009: dt: 0.2500, sse=243676.9, rms=1.453 (3.441%) rms = 1.4291/1.4531, sse=240411.2/243676.9, time step reduction 2 of 3 to 0.125 0 0 1 010: dt: 0.2500, sse=240411.2, rms=1.429 (1.653%) 011: dt: 0.1250, sse=233300.1, rms=1.320 (7.608%) rms = 1.3017/1.3204, sse=232408.9/233300.1, time step reduction 3 of 3 to 0.062 0 0 1 012: dt: 0.1250, sse=232408.9, rms=1.302 (1.415%) maximum number of reductions reached, breaking from loop positioning took 1.0 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 62.0000000; outside_low = 52.4100650; outside_hi = 113.8293000; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 1672488 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=1 had to be increased for 95 vertices, nripped=8345 mean border=80.2, 48 (5) missing vertices, mean dist -0.2 [0.3 (%84.7)->0.2 (%15.3))] %89 local maxima, % 5 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0986 min Finding expansion regions mean absolute distance = 0.29 +- 0.40 2418 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=bbs96, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1017452.6, rms=5.776 013: dt: 0.5000, sse=520069.8, rms=3.589 (37.869%) rms = 3.8998/3.5886, sse=574488.0/520069.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 014: dt: 0.2500, sse=350122.9, rms=2.439 (32.040%) 015: dt: 0.2500, sse=279552.8, rms=1.738 (28.753%) 016: dt: 0.2500, sse=253509.3, rms=1.400 (19.448%) 017: dt: 0.2500, sse=246289.0, rms=1.282 (8.414%) 018: dt: 0.2500, sse=243819.7, rms=1.228 (4.170%) rms = 1.2107/1.2284, sse=242426.5/243819.7, time step reduction 2 of 3 to 0.125 0 0 1 019: dt: 0.2500, sse=242426.5, rms=1.211 (1.441%) 020: dt: 0.1250, sse=234188.3, rms=1.052 (13.097%) rms = 1.0336/1.0522, sse=233522.4/234188.3, time step reduction 3 of 3 to 0.062 0 0 1 021: dt: 0.1250, sse=233522.4, rms=1.034 (1.759%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 62.0000000; outside_low = 52.4100650; outside_hi = 113.8293000; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 1784544 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 69 vertices, nripped=8345 mean border=82.3, 74 (2) missing vertices, mean dist -0.1 [0.2 (%70.7)->0.2 (%29.3))] %91 local maxima, % 2 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0550 min Finding expansion regions mean absolute distance = 0.18 +- 0.30 2199 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=bbs96, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=397356.2, rms=2.845 rms = 3.3141/2.8451, sse=481396.7/397356.2, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 022: dt: 0.2500, sse=280050.2, rms=1.795 (36.900%) 023: dt: 0.2500, sse=242264.1, rms=1.150 (35.943%) 024: dt: 0.2500, sse=232455.2, rms=1.075 (6.484%) rms = 1.0578/1.0754, sse=230496.7/232455.2, time step reduction 2 of 3 to 0.125 0 0 1 025: dt: 0.2500, sse=230496.7, rms=1.058 (1.640%) 026: dt: 0.1250, sse=224255.6, rms=0.934 (11.659%) rms = 0.9172/0.9345, sse=223427.4/224255.6, time step reduction 3 of 3 to 0.062 0 0 1 027: dt: 0.1250, sse=223427.4, rms=0.917 (1.849%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 62.0000000; outside_low = 52.4100650; outside_hi = 113.8293000; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 1890496 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 94 vertices, nripped=8345 mean border=82.9, 96 (0) missing vertices, mean dist -0.0 [0.2 (%55.3)->0.2 (%44.7))] %92 local maxima, % 1 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0354 min Finding expansion regions mean absolute distance = 0.16 +- 0.25 2339 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=bbs96, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=241073.1, rms=1.292 rms = 1.9429/1.2924, sse=309567.5/241073.1, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 028: dt: 0.2500, sse=218153.8, rms=0.814 (37.023%) rms = 0.7273/0.8139, sse=218177.8/218153.8, time step reduction 2 of 3 to 0.125 0 1 0 029: dt: 0.2500, sse=218177.8, rms=0.727 (10.645%) rms = 0.6998/0.7273, sse=215294.8/218177.8, time step reduction 3 of 3 to 0.062 0 0 1 030: dt: 0.1250, sse=215294.8, rms=0.700 (3.779%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.90 minutes Writing output to ../surf/lh.white #VMPC# mris_place_surfaces VmPeak 1927948 mris_place_surface done @#@FSTIME 2025:10:22:11:23:55 mris_place_surface N 30 e 181.12 S 1.05 U 180.02 P 99% M 1671148 F 0 R 478387 W 0 c 327 w 2 I 0 O 11360 L 24.09 24.10 24.07 @#@FSLOADPOST 2025:10:22:11:26:56 mris_place_surface N 30 24.21 24.13 24.09 #-------------------------------------------- #@# WhiteSurfs rh Wed Oct 22 11:26:56 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof 8.0.0 8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot --restore-255 --restore-255 --outvol mrisps.white.mgz --rip-bg-lof Reading in input surface ../surf/rh.white.preaparc Not smoothing input surface Area 258754 0.34161 0.12830 0.000689 1.6886 Corner 776262 60.00000 14.75474 0.337656 178.8894 Edge 388131 0.90016 0.21191 0.023420 2.9953 Hinge 388131 9.99123 11.32839 0.000026 179.7425 Reading in aparc ../label/rh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRItrack255() nhits = 987 MRIclipBrightWM(): nthresh=25388, wmmin=5, clip=110 MRIfindBrightNonWM(): 759 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Restoring 255->110 987 Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex.label MRISripNotLabel() ripped 7489/129379 vertices (121890 unripped) Reading in ripping surface ../surf/rh.white.preaparc Reading in aparc ../label/rh.aparc.annot for ripsurf [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Ripping BG MRISripBasalGanglia(): 1 -2 2 0.5 Ripping lateralorbitofrontal MRISripBasalGanglia(): 1 -2 2 0.5 ripped 806 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=5 nspr=0.3 curv=1 vertex 64690: xyz = (58.3865,-0.990552,37.2531) oxyz = (58.3865,-0.990552,37.2531) wxzy = (58.3865,-0.990552,37.2531) pxyz = (0,0,0) CBVO Creating mask 129379 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 61.0000000; outside_low = 51.4100650; outside_hi = 113.8293000; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 823692 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=2 had to be increased for 70 vertices, nripped=8295 mean border=74.9, 20 (20) missing vertices, mean dist 0.4 [0.5 (%11.4)->0.5 (%88.6))] %80 local maxima, %14 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1372 min Finding expansion regions mean absolute distance = 0.51 +- 0.64 3744 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=bbs96, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=2439716.5, rms=9.641 001: dt: 0.5000, sse=890202.2, rms=5.396 (44.023%) 002: dt: 0.5000, sse=610033.9, rms=4.190 (22.351%) 003: dt: 0.5000, sse=552351.5, rms=3.890 (7.155%) 004: dt: 0.5000, sse=530384.2, rms=3.753 (3.526%) rms = 3.7783/3.7533, sse=534243.6/530384.2, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 005: dt: 0.2500, sse=339224.5, rms=2.479 (33.939%) 006: dt: 0.2500, sse=275696.6, rms=1.875 (24.374%) 007: dt: 0.2500, sse=254788.6, rms=1.622 (13.494%) 008: dt: 0.2500, sse=251733.7, rms=1.568 (3.332%) 009: dt: 0.2500, sse=248801.1, rms=1.508 (3.848%) rms = 1.4894/1.5077, sse=247327.1/248801.1, time step reduction 2 of 3 to 0.125 0 0 1 010: dt: 0.2500, sse=247327.1, rms=1.489 (1.214%) 011: dt: 0.1250, sse=240356.0, rms=1.389 (6.773%) rms = 1.3713/1.3885, sse=239459.6/240356.0, time step reduction 3 of 3 to 0.062 0 0 1 012: dt: 0.1250, sse=239459.6, rms=1.371 (1.240%) maximum number of reductions reached, breaking from loop positioning took 1.0 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 61.0000000; outside_low = 51.4100650; outside_hi = 113.8293000; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 1626028 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=1 had to be increased for 99 vertices, nripped=8295 mean border=79.7, 34 (2) missing vertices, mean dist -0.2 [0.3 (%84.5)->0.2 (%15.5))] %89 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0989 min Finding expansion regions mean absolute distance = 0.30 +- 0.40 2825 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=bbs96, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1058400.5, rms=5.925 013: dt: 0.5000, sse=545224.7, rms=3.729 (37.059%) rms = 3.9371/3.7294, sse=580497.3/545224.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 014: dt: 0.2500, sse=374655.6, rms=2.627 (29.567%) 015: dt: 0.2500, sse=292772.3, rms=1.882 (28.365%) 016: dt: 0.2500, sse=260181.7, rms=1.478 (21.459%) 017: dt: 0.2500, sse=249687.7, rms=1.325 (10.325%) 018: dt: 0.2500, sse=243576.3, rms=1.234 (6.898%) rms = 1.2140/1.2338, sse=242284.7/243576.3, time step reduction 2 of 3 to 0.125 0 0 1 019: dt: 0.2500, sse=242284.7, rms=1.214 (1.609%) 020: dt: 0.1250, sse=234077.9, rms=1.064 (12.333%) rms = 1.0457/1.0643, sse=233167.1/234077.9, time step reduction 3 of 3 to 0.062 0 0 1 021: dt: 0.1250, sse=233167.1, rms=1.046 (1.746%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 61.0000000; outside_low = 51.4100650; outside_hi = 113.8293000; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 1741004 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 96 vertices, nripped=8295 mean border=81.9, 56 (1) missing vertices, mean dist -0.1 [0.2 (%71.0)->0.2 (%29.0))] %92 local maxima, % 2 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0567 min Finding expansion regions mean absolute distance = 0.19 +- 0.29 2368 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=bbs96, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=424055.4, rms=3.049 rms = 3.3307/3.0490, sse=482102.5/424055.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 022: dt: 0.2500, sse=298904.2, rms=2.020 (33.746%) 023: dt: 0.2500, sse=241101.6, rms=1.251 (38.075%) 024: dt: 0.2500, sse=232071.0, rms=1.107 (11.508%) rms = 1.0602/1.1070, sse=229393.1/232071.0, time step reduction 2 of 3 to 0.125 0 0 1 025: dt: 0.2500, sse=229393.1, rms=1.060 (4.222%) 026: dt: 0.1250, sse=223564.7, rms=0.944 (10.938%) rms = 0.9306/0.9443, sse=222630.5/223564.7, time step reduction 3 of 3 to 0.062 0 0 1 027: dt: 0.1250, sse=222630.5, rms=0.931 (1.450%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 113.8293000; border_low = 61.0000000; outside_low = 51.4100650; outside_hi = 113.8293000; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 1858332 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 89 vertices, nripped=8295 mean border=82.6, 94 (1) missing vertices, mean dist -0.0 [0.2 (%55.4)->0.2 (%44.6))] %92 local maxima, % 1 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0366 min Finding expansion regions mean absolute distance = 0.16 +- 0.26 2129 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=bbs96, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=241263.2, rms=1.318 rms = 1.9582/1.3182, sse=306391.3/241263.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 028: dt: 0.2500, sse=217174.3, rms=0.835 (36.693%) 029: dt: 0.2500, sse=216155.0, rms=0.723 (13.395%) rms = 0.7325/0.7227, sse=215866.3/216155.0, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 0.7120/0.7227, sse=215440.4/216155.0, time step reduction 3 of 3 to 0.062 0 0 1 030: dt: 0.1250, sse=215440.4, rms=0.712 (1.490%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Removing intersections #ET# mris_place_surface 2.93 minutes Writing output to ../surf/rh.white #VMPC# mris_place_surfaces VmPeak 1926896 mris_place_surface done @#@FSTIME 2025:10:22:11:26:56 mris_place_surface N 30 e 182.76 S 1.06 U 181.64 P 99% M 1669844 F 0 R 478417 W 0 c 249 w 4 I 0 O 11304 L 24.21 24.13 24.09 @#@FSLOADPOST 2025:10:22:11:29:59 mris_place_surface N 30 24.19 24.20 24.12 #-------------------------------------------- #@# T1PialSurf lh Wed Oct 22 11:29:59 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white --restore-255 8.0.0 8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white --restore-255 Reading in input surface ../surf/lh.white Not smoothing input surface Area 260318 0.34511 0.14290 0.000843 3.3302 Corner 780954 60.00000 16.55904 0.039498 179.1103 Edge 390477 0.90668 0.23220 0.006750 4.0334 Hinge 390477 10.32690 12.48451 0.000046 179.7612 Reading white surface coordinates from ../surf/lh.white Reading repulsion surface coordinates from ../surf/lh.white Reading in aparc ../label/lh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=25388, wmmin=5, clip=110 MRIfindBrightNonWM(): 759 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 63.7004 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex+hipamyg.label MRISripNotLabel() ripped 5471/130161 vertices (124690 unripped) INFO: rip surface needed but not specified, so using input surface Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=0 nspr=0.3 curv=1 vertex 65081: xyz = (-52.7852,-2.91122,56.8534) oxyz = (-52.7852,-2.91122,56.8534) wxzy = (-52.7852,-2.91122,56.8534) pxyz = (-52.7852,-2.91122,56.8534) CBVO Creating mask 130161 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.1707000; border_hi = 52.4100650; border_low = 33.2301940; outside_low = 10.0000000; outside_hi = 47.6150970; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 770896 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=2 had to be increased for 215 vertices, nripped=5471 mean border=51.5, 113 (113) missing vertices, mean dist 1.5 [0.4 (%0.0)->3.2 (%100.0))] %10 local maxima, %34 large gradients and %52 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1253 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=bbs96, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=25637652.0, rms=31.956 001: dt: 0.5000, sse=16202927.0, rms=25.348 (20.680%) 002: dt: 0.5000, sse=10243067.0, rms=20.081 (20.778%) 003: dt: 0.5000, sse=6973276.5, rms=16.490 (17.882%) 004: dt: 0.5000, sse=5224474.5, rms=14.199 (13.890%) 005: dt: 0.5000, sse=4210439.5, rms=12.681 (10.694%) 006: dt: 0.5000, sse=3495756.2, rms=11.489 (9.403%) 007: dt: 0.5000, sse=2891085.0, rms=10.372 (9.721%) 008: dt: 0.5000, sse=2389842.0, rms=9.344 (9.907%) 009: dt: 0.5000, sse=1987431.9, rms=8.428 (9.803%) 010: dt: 0.5000, sse=1656541.2, rms=7.592 (9.927%) 011: dt: 0.5000, sse=1389977.4, rms=6.843 (9.867%) 012: dt: 0.5000, sse=1167382.5, rms=6.147 (10.168%) 013: dt: 0.5000, sse=995539.8, rms=5.550 (9.712%) 014: dt: 0.5000, sse=875249.2, rms=5.089 (8.301%) 015: dt: 0.5000, sse=800486.4, rms=4.779 (6.103%) 016: dt: 0.5000, sse=751708.5, rms=4.563 (4.504%) 017: dt: 0.5000, sse=725806.4, rms=4.442 (2.647%) 018: dt: 0.5000, sse=706017.4, rms=4.348 (2.137%) rms = 4.2990/4.3475, sse=696481.7/706017.4, time step reduction 1 of 3 to 0.250 0 0 1 019: dt: 0.5000, sse=696481.6, rms=4.299 (1.116%) 020: dt: 0.2500, sse=600963.5, rms=3.805 (11.493%) 021: dt: 0.2500, sse=576566.6, rms=3.671 (3.520%) rms = 3.6531/3.6710, sse=573755.9/576566.6, time step reduction 2 of 3 to 0.125 0 0 1 022: dt: 0.2500, sse=573755.9, rms=3.653 (0.489%) 023: dt: 0.1250, sse=559663.9, rms=3.570 (2.264%) rms = 3.5504/3.5703, sse=556337.3/559663.9, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=556337.3, rms=3.550 (0.559%) maximum number of reductions reached, breaking from loop positioning took 1.7 minutes done positioning surface Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.1707000; border_hi = 52.4100650; border_low = 33.2301940; outside_low = 10.0000000; outside_hi = 47.6150970; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 1193952 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=1 had to be increased for 16109 vertices, nripped=5471 mean border=50.6, 2631 (46) missing vertices, mean dist 0.1 [0.1 (%48.0)->0.5 (%52.0))] %20 local maxima, %27 large gradients and %47 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0295 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=bbs96, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=682522.6, rms=3.877 rms = 3.9758/3.8767, sse=702075.9/682522.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=633852.2, rms=3.612 (6.832%) 026: dt: 0.2500, sse=610333.0, rms=3.475 (3.775%) rms = 3.4400/3.4754, sse=604038.6/610333.0, time step reduction 2 of 3 to 0.125 0 0 1 027: dt: 0.2500, sse=604038.6, rms=3.440 (1.019%) 028: dt: 0.1250, sse=587964.1, rms=3.341 (2.879%) rms = 3.3099/3.3410, sse=582897.8/587964.1, time step reduction 3 of 3 to 0.062 0 0 1 029: dt: 0.1250, sse=582897.8, rms=3.310 (0.928%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.1707000; border_hi = 52.4100650; border_low = 33.2301940; outside_low = 10.0000000; outside_hi = 47.6150970; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 1214352 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 16455 vertices, nripped=5471 mean border=50.1, 2779 (43) missing vertices, mean dist 0.1 [0.2 (%42.5)->0.4 (%57.5))] %31 local maxima, %15 large gradients and %47 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0174 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=bbs96, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=615054.2, rms=3.484 rms = 3.7869/3.4844, sse=668492.1/615054.2, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 030: dt: 0.2500, sse=592872.2, rms=3.353 (3.783%) rms = 3.3305/3.3526, sse=588794.7/592872.3, time step reduction 2 of 3 to 0.125 0 0 1 031: dt: 0.2500, sse=588794.7, rms=3.331 (0.659%) 032: dt: 0.1250, sse=579342.0, rms=3.271 (1.793%) rms = 3.2491/3.2708, sse=575676.4/579342.0, time step reduction 3 of 3 to 0.062 0 0 1 033: dt: 0.1250, sse=575676.4, rms=3.249 (0.663%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.1707000; border_hi = 52.4100650; border_low = 33.2301940; outside_low = 10.0000000; outside_hi = 47.6150970; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=130161 Gdiag_no=-1 VMPeak = 1232860 vno start=0, stop=130161 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 13293 vertices, nripped=5471 mean border=49.5, 6627 (41) missing vertices, mean dist 0.0 [0.2 (%44.8)->0.3 (%55.2))] %33 local maxima, %12 large gradients and %45 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0111 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=bbs96, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=599893.0, rms=3.391 rms = 3.5970/3.3909, sse=632888.5/599893.0, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 034: dt: 0.2500, sse=586527.8, rms=3.311 (2.362%) 035: dt: 0.2500, sse=575125.6, rms=3.248 (1.885%) rms = 3.2399/3.2484, sse=573082.4/575125.6, time step reduction 2 of 3 to 0.125 0 0 1 036: dt: 0.2500, sse=573082.4, rms=3.240 (0.262%) 037: dt: 0.1250, sse=555957.6, rms=3.131 (3.372%) rms = 3.0941/3.1306, sse=549978.5/555957.6, time step reduction 3 of 3 to 0.062 0 0 1 038: dt: 0.1250, sse=549978.6, rms=3.094 (1.168%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Pinning medial wall to white surface Removing intersections removing intersecting faces 000: 8 intersecting terminating search with 0 intersecting #ET# mris_place_surface 3.05 minutes Writing output to ../surf/lh.pial.T1 #VMPC# mris_place_surfaces VmPeak 1253692 mris_place_surface done @#@FSTIME 2025:10:22:11:29:59 mris_place_surface N 29 e 189.29 S 0.63 U 188.59 P 99% M 996540 F 0 R 269504 W 0 c 328 w 2 I 0 O 9160 L 24.19 24.20 24.12 @#@FSLOADPOST 2025:10:22:11:33:08 mris_place_surface N 29 24.17 24.17 24.11 #-------------------------------------------- #@# T1PialSurf rh Wed Oct 22 11:33:08 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white --restore-255 8.0.0 8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white --restore-255 Reading in input surface ../surf/rh.white Not smoothing input surface Area 258754 0.34681 0.14777 0.001093 2.2086 Corner 776262 60.00000 16.79569 0.179728 178.3052 Edge 388131 0.90936 0.23845 0.020534 3.2782 Hinge 388131 10.35157 12.58953 0.000064 179.9590 Reading white surface coordinates from ../surf/rh.white Reading repulsion surface coordinates from ../surf/rh.white Reading in aparc ../label/rh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=25388, wmmin=5, clip=110 MRIfindBrightNonWM(): 759 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 63.2004 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex+hipamyg.label MRISripNotLabel() ripped 5274/129379 vertices (124105 unripped) INFO: rip surface needed but not specified, so using input surface Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 opt weights int=0.2 loc=0 rep=0 nspr=0.3 curv=1 vertex 64690: xyz = (58.7003,-0.888255,37.1706) oxyz = (58.7003,-0.888255,37.1706) wxzy = (58.7003,-0.888255,37.1706) pxyz = (58.7003,-0.888255,37.1706) CBVO Creating mask 129379 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.1707000; border_hi = 51.4100650; border_low = 32.2301940; outside_low = 10.0000000; outside_hi = 46.6150970; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 767860 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=2 had to be increased for 182 vertices, nripped=5274 mean border=50.6, 78 (78) missing vertices, mean dist 1.4 [0.2 (%0.0)->3.2 (%100.0))] % 9 local maxima, %33 large gradients and %54 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1243 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=bbs96, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=26495934.0, rms=32.562 001: dt: 0.5000, sse=16917386.0, rms=25.964 (20.264%) 002: dt: 0.5000, sse=10824972.0, rms=20.699 (20.277%) 003: dt: 0.5000, sse=7448675.0, rms=17.095 (17.410%) 004: dt: 0.5000, sse=5610060.0, rms=14.766 (13.627%) 005: dt: 0.5000, sse=4522699.5, rms=13.194 (10.646%) 006: dt: 0.5000, sse=3746740.5, rms=11.944 (9.472%) 007: dt: 0.5000, sse=3082125.8, rms=10.757 (9.936%) 008: dt: 0.5000, sse=2529505.0, rms=9.659 (10.208%) 009: dt: 0.5000, sse=2078541.0, rms=8.660 (10.348%) 010: dt: 0.5000, sse=1722897.4, rms=7.781 (10.152%) 011: dt: 0.5000, sse=1451568.9, rms=7.035 (9.587%) 012: dt: 0.5000, sse=1238292.6, rms=6.387 (9.202%) 013: dt: 0.5000, sse=1068320.5, rms=5.819 (8.898%) 014: dt: 0.5000, sse=947931.1, rms=5.379 (7.558%) 015: dt: 0.5000, sse=863673.0, rms=5.047 (6.171%) 016: dt: 0.5000, sse=806164.9, rms=4.806 (4.772%) 017: dt: 0.5000, sse=770640.6, rms=4.650 (3.258%) 018: dt: 0.5000, sse=747718.9, rms=4.544 (2.266%) 019: dt: 0.5000, sse=731359.2, rms=4.467 (1.699%) 020: dt: 0.5000, sse=720130.6, rms=4.412 (1.235%) rms = 4.3751/4.4120, sse=712799.7/720130.5, time step reduction 1 of 3 to 0.250 0 0 1 021: dt: 0.5000, sse=712799.8, rms=4.375 (0.836%) 022: dt: 0.2500, sse=613586.4, rms=3.870 (11.557%) 023: dt: 0.2500, sse=588889.2, rms=3.736 (3.444%) rms = 3.7236/3.7362, sse=586951.7/588889.3, time step reduction 2 of 3 to 0.125 0 0 1 024: dt: 0.2500, sse=586951.7, rms=3.724 (0.339%) 025: dt: 0.1250, sse=571632.4, rms=3.635 (2.373%) rms = 3.6165/3.6352, sse=568434.7/571632.5, time step reduction 3 of 3 to 0.062 0 0 1 026: dt: 0.1250, sse=568434.8, rms=3.616 (0.515%) maximum number of reductions reached, breaking from loop positioning took 1.7 minutes done positioning surface Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.1707000; border_hi = 51.4100650; border_low = 32.2301940; outside_low = 10.0000000; outside_hi = 46.6150970; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 1190636 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=1 had to be increased for 17429 vertices, nripped=5274 mean border=49.8, 3039 (19) missing vertices, mean dist 0.1 [0.1 (%48.6)->0.6 (%51.4))] %18 local maxima, %27 large gradients and %49 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0283 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=bbs96, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=683629.4, rms=3.873 rms = 4.0608/3.8732, sse=720370.2/683629.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 027: dt: 0.2500, sse=638584.3, rms=3.627 (6.347%) 028: dt: 0.2500, sse=622538.4, rms=3.535 (2.544%) rms = 3.5346/3.5351, sse=622103.1/622538.3, time step reduction 2 of 3 to 0.125 0 0 1 029: dt: 0.2500, sse=622103.1, rms=3.535 (0.015%) 030: dt: 0.1250, sse=607930.9, rms=3.449 (2.415%) rms = 3.4353/3.4492, sse=605505.9/607931.0, time step reduction 3 of 3 to 0.062 0 0 1 031: dt: 0.1250, sse=605505.9, rms=3.435 (0.404%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.1707000; border_hi = 51.4100650; border_low = 32.2301940; outside_low = 10.0000000; outside_hi = 46.6150970; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 1212188 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 17260 vertices, nripped=5274 mean border=49.3, 3302 (16) missing vertices, mean dist 0.1 [0.1 (%44.5)->0.4 (%55.5))] %29 local maxima, %16 large gradients and %49 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0172 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=bbs96, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=636853.6, rms=3.603 rms = 3.9858/3.6027, sse=706994.7/636853.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 032: dt: 0.2500, sse=619420.0, rms=3.503 (2.773%) rms = 3.5334/3.5028, sse=624090.2/619420.0, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step rms = 3.4910/3.5028, sse=617406.3/619420.0, time step reduction 3 of 3 to 0.062 0 0 1 033: dt: 0.1250, sse=617406.3, rms=3.491 (0.339%) maximum number of reductions reached, breaking from loop positioning took 0.2 minutes done positioning surface Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 94.1707000; border_hi = 51.4100650; border_low = 32.2301940; outside_low = 10.0000000; outside_hi = 46.6150970; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=129379 Gdiag_no=-1 VMPeak = 1224012 vno start=0, stop=129379 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 13738 vertices, nripped=5274 mean border=48.8, 7147 (16) missing vertices, mean dist 0.1 [0.1 (%43.7)->0.3 (%56.3))] %31 local maxima, %13 large gradients and %47 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0109 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface subiter 0 Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=bbs96, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=647685.9, rms=3.663 rms = 3.7820/3.6628, sse=666294.0/647685.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 034: dt: 0.2500, sse=624493.9, rms=3.534 (3.527%) 035: dt: 0.2500, sse=602752.4, rms=3.416 (3.320%) 036: dt: 0.2500, sse=593003.1, rms=3.364 (1.529%) rms = 3.3269/3.3640, sse=585882.7/593003.1, time step reduction 2 of 3 to 0.125 0 0 1 037: dt: 0.2500, sse=585882.8, rms=3.327 (1.103%) 038: dt: 0.1250, sse=567506.8, rms=3.211 (3.480%) rms = 3.1742/3.2112, sse=561339.4/567506.8, time step reduction 3 of 3 to 0.062 0 0 1 039: dt: 0.1250, sse=561339.4, rms=3.174 (1.151%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Pinning medial wall to white surface Removing intersections removing intersecting faces 000: 4 intersecting terminating search with 0 intersecting #ET# mris_place_surface 3.10 minutes Writing output to ../surf/rh.pial.T1 #VMPC# mris_place_surfaces VmPeak 1248300 mris_place_surface done @#@FSTIME 2025:10:22:11:33:08 mris_place_surface N 29 e 192.15 S 0.58 U 191.55 P 99% M 991948 F 0 R 275669 W 0 c 319 w 1 I 0 O 9104 L 24.17 24.17 24.11 @#@FSLOADPOST 2025:10:22:11:36:21 mris_place_surface N 29 24.08 24.15 24.11 #@# white curv lh Wed Oct 22 11:36:21 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv insurf ../surf/lh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv type -1 @#@FSTIME 2025:10:22:11:36:21 mris_place_surface N 5 e 1.50 S 0.10 U 1.40 P 100% M 179300 F 0 R 47670 W 0 c 2 w 1 I 0 O 1024 L 24.08 24.15 24.11 @#@FSLOADPOST 2025:10:22:11:36:22 mris_place_surface N 5 24.08 24.15 24.11 #@# white area lh Wed Oct 22 11:36:22 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area writing curvature file ../surf/lh.area type -1 @#@FSTIME 2025:10:22:11:36:22 mris_place_surface N 3 e 0.69 S 0.10 U 0.58 P 99% M 179296 F 0 R 47671 W 0 c 1 w 1 I 0 O 1024 L 24.08 24.15 24.11 @#@FSLOADPOST 2025:10:22:11:36:23 mris_place_surface N 3 24.08 24.15 24.11 #@# pial curv lh Wed Oct 22 11:36:23 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial insurf ../surf/lh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv.pial type -1 @#@FSTIME 2025:10:22:11:36:23 mris_place_surface N 5 e 1.42 S 0.09 U 1.33 P 99% M 179304 F 0 R 47671 W 0 c 4 w 1 I 0 O 1024 L 24.08 24.15 24.11 @#@FSLOADPOST 2025:10:22:11:36:24 mris_place_surface N 5 24.07 24.15 24.11 #@# pial area lh Wed Oct 22 11:36:24 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial writing curvature file ../surf/lh.area.pial type -1 @#@FSTIME 2025:10:22:11:36:24 mris_place_surface N 3 e 0.72 S 0.09 U 0.62 P 100% M 179300 F 0 R 47669 W 0 c 2 w 1 I 0 O 1024 L 24.07 24.15 24.11 @#@FSLOADPOST 2025:10:22:11:36:25 mris_place_surface N 3 24.07 24.15 24.11 #@# thickness lh Wed Oct 22 11:36:25 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness 0 of 130161 vertices processed 25000 of 130161 vertices processed 50000 of 130161 vertices processed 75000 of 130161 vertices processed 100000 of 130161 vertices processed 125000 of 130161 vertices processed 0 of 130161 vertices processed 25000 of 130161 vertices processed 50000 of 130161 vertices processed 75000 of 130161 vertices processed 100000 of 130161 vertices processed 125000 of 130161 vertices processed thickness calculation complete, 319:2142 truncations. 49140 vertices at 0 distance 99901 vertices at 1 distance 69686 vertices at 2 distance 26591 vertices at 3 distance 9257 vertices at 4 distance 3253 vertices at 5 distance 1245 vertices at 6 distance 504 vertices at 7 distance 202 vertices at 8 distance 114 vertices at 9 distance 81 vertices at 10 distance 43 vertices at 11 distance 43 vertices at 12 distance 35 vertices at 13 distance 34 vertices at 14 distance 44 vertices at 15 distance 34 vertices at 16 distance 33 vertices at 17 distance 27 vertices at 18 distance 22 vertices at 19 distance 33 vertices at 20 distance writing curvature file ../surf/lh.thickness type -1 @#@FSTIME 2025:10:22:11:36:25 mris_place_surface N 6 e 24.63 S 0.11 U 24.51 P 99% M 179300 F 0 R 54532 W 0 c 42 w 1 I 0 O 1024 L 24.07 24.15 24.11 @#@FSLOADPOST 2025:10:22:11:36:50 mris_place_surface N 6 24.11 24.15 24.11 #@# area and vertex vol lh Wed Oct 22 11:36:50 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 18228 mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 18228 mris_convert --volume sub-01EN91PG_ses-00A lh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.volume mris_convert --volume sub-01EN91PG_ses-00A lh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.volume masking with /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Total face volume 284653 Total vertex volume 284504 (mask=0) #@# sub-01EN91PG_ses-00A lh 284504 vertexvol Done @#@FSTIME 2025:10:22:11:36:50 vertexvol N 4 e 1.39 S 0.21 U 1.12 P 96% M 298064 F 0 R 87619 W 0 c 6 w 31 I 0 O 3072 L 24.11 24.15 24.11 @#@FSLOADPOST 2025:10:22:11:36:51 vertexvol N 4 24.11 24.15 24.11 #@# white curv rh Wed Oct 22 11:36:51 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv insurf ../surf/rh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv type -1 @#@FSTIME 2025:10:22:11:36:51 mris_place_surface N 5 e 1.43 S 0.10 U 1.32 P 100% M 178320 F 0 R 47985 W 0 c 5 w 1 I 0 O 1016 L 24.11 24.15 24.11 @#@FSLOADPOST 2025:10:22:11:36:53 mris_place_surface N 5 24.11 24.15 24.11 #@# white area rh Wed Oct 22 11:36:53 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area writing curvature file ../surf/rh.area type -1 @#@FSTIME 2025:10:22:11:36:53 mris_place_surface N 3 e 0.63 S 0.09 U 0.53 P 99% M 178180 F 0 R 47986 W 0 c 3 w 1 I 0 O 1016 L 24.11 24.15 24.11 @#@FSLOADPOST 2025:10:22:11:36:53 mris_place_surface N 3 24.10 24.15 24.11 #@# pial curv rh Wed Oct 22 11:36:53 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial insurf ../surf/rh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv.pial type -1 @#@FSTIME 2025:10:22:11:36:53 mris_place_surface N 5 e 1.37 S 0.10 U 1.26 P 99% M 178320 F 0 R 47984 W 0 c 5 w 1 I 0 O 1016 L 24.10 24.15 24.11 @#@FSLOADPOST 2025:10:22:11:36:55 mris_place_surface N 5 24.10 24.15 24.11 #@# pial area rh Wed Oct 22 11:36:55 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial writing curvature file ../surf/rh.area.pial type -1 @#@FSTIME 2025:10:22:11:36:55 mris_place_surface N 3 e 0.60 S 0.09 U 0.51 P 100% M 178180 F 0 R 47985 W 0 c 4 w 1 I 0 O 1016 L 24.10 24.15 24.11 @#@FSLOADPOST 2025:10:22:11:36:55 mris_place_surface N 3 24.10 24.15 24.11 #@# thickness rh Wed Oct 22 11:36:55 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness 0 of 129379 vertices processed 25000 of 129379 vertices processed 50000 of 129379 vertices processed 75000 of 129379 vertices processed 100000 of 129379 vertices processed 125000 of 129379 vertices processed 0 of 129379 vertices processed 25000 of 129379 vertices processed 50000 of 129379 vertices processed 75000 of 129379 vertices processed 100000 of 129379 vertices processed 125000 of 129379 vertices processed thickness calculation complete, 281:1954 truncations. 46920 vertices at 0 distance 97807 vertices at 1 distance 71299 vertices at 2 distance 27151 vertices at 3 distance 9629 vertices at 4 distance 3530 vertices at 5 distance 1277 vertices at 6 distance 488 vertices at 7 distance 168 vertices at 8 distance 113 vertices at 9 distance 68 vertices at 10 distance 55 vertices at 11 distance 39 vertices at 12 distance 45 vertices at 13 distance 24 vertices at 14 distance 36 vertices at 15 distance 26 vertices at 16 distance 21 vertices at 17 distance 21 vertices at 18 distance 19 vertices at 19 distance 22 vertices at 20 distance writing curvature file ../surf/rh.thickness type -1 @#@FSTIME 2025:10:22:11:36:55 mris_place_surface N 6 e 22.58 S 0.11 U 22.46 P 99% M 178324 F 0 R 54809 W 0 c 44 w 1 I 0 O 1016 L 24.10 24.15 24.11 @#@FSLOADPOST 2025:10:22:11:37:18 mris_place_surface N 6 24.21 24.17 24.12 #@# area and vertex vol rh Wed Oct 22 11:37:18 CDT 2025 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 18216 mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 18216 mris_convert --volume sub-01EN91PG_ses-00A rh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.volume mris_convert --volume sub-01EN91PG_ses-00A rh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.volume masking with /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Total face volume 283936 Total vertex volume 283778 (mask=0) #@# sub-01EN91PG_ses-00A rh 283778 vertexvol Done @#@FSTIME 2025:10:22:11:37:18 vertexvol N 4 e 1.38 S 0.19 U 1.14 P 96% M 296748 F 0 R 84610 W 0 c 7 w 33 I 0 O 3048 L 24.21 24.17 24.12 @#@FSLOADPOST 2025:10:22:11:37:19 vertexvol N 4 24.19 24.17 24.12 #----------------------------------------- #@# Curvature Stats lh Wed Oct 22 11:37:19 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm sub-01EN91PG_ses-00A lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-01EN91PG_ses-00A/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 251 ] Gb_filter = 0 WARN: S lookup min: -0.132860 WARN: S explicit min: 0.000000 vertex = 3673 WARN: C lookup min: 0.003567 WARN: C explicit min: 0.006143 vertex = 26929 @#@FSTIME 2025:10:22:11:37:19 mris_curvature_stats N 11 e 1.63 S 0.10 U 1.53 P 100% M 179376 F 0 R 47873 W 0 c 3 w 1 I 0 O 8232 L 24.19 24.17 24.12 @#@FSLOADPOST 2025:10:22:11:37:21 mris_curvature_stats N 11 24.19 24.17 24.12 #----------------------------------------- #@# Curvature Stats rh Wed Oct 22 11:37:21 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm sub-01EN91PG_ses-00A rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-01EN91PG_ses-00A/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 275 ] Gb_filter = 0 WARN: S lookup min: -0.132648 WARN: S explicit min: 0.000000 vertex = 1197 @#@FSTIME 2025:10:22:11:37:21 mris_curvature_stats N 11 e 1.62 S 0.11 U 1.50 P 100% M 178112 F 0 R 47565 W 0 c 2 w 1 I 0 O 8168 L 24.19 24.17 24.12 @#@FSLOADPOST 2025:10:22:11:37:23 mris_curvature_stats N 11 24.19 24.17 24.12 #-------------------------------------------- #@# Cortical ribbon mask Wed Oct 22 11:37:23 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon sub-01EN91PG_ses-00A SUBJECTS_DIR is /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 loading input data... Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/aseg.presurf.mgz Running hemis serially Processing left hemi computing distance to left white surface computing distance to left pial surface Processing right hemi computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 378 writing volume /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/ribbon.mgz mris_volmask took 5.26 minutes writing ribbon files @#@FSTIME 2025:10:22:11:37:23 mris_volmask N 12 e 315.39 S 0.98 U 314.40 P 99% M 957984 F 0 R 518280 W 0 c 240 w 1 I 0 O 952 L 24.19 24.17 24.12 @#@FSLOADPOST 2025:10:22:11:42:38 mris_volmask N 12 24.16 24.13 24.10 #----------------------------------------- #@# Cortical Parc 2 lh Wed Oct 22 11:42:38 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-01EN91PG_ses-00A lh ../surf/lh.sphere.reg /usr/local/freesurfer/8.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /usr/local/freesurfer/8.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 3.0 using min determinant for regularization = 0.088 0 singular and 0 ill-conditioned covariance matrices regularized reading surface from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 76 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 2 labels changed using aseg relabeling using gibbs priors... 000: 8625 changed, 130161 examined... 001: 2008 changed, 33760 examined... 002: 592 changed, 10736 examined... 003: 253 changed, 3415 examined... 004: 121 changed, 1504 examined... 005: 78 changed, 720 examined... 006: 30 changed, 412 examined... 007: 18 changed, 184 examined... 008: 8 changed, 94 examined... 009: 7 changed, 47 examined... 010: 4 changed, 41 examined... 011: 5 changed, 24 examined... 012: 4 changed, 27 examined... 013: 4 changed, 20 examined... 014: 4 changed, 24 examined... 015: 0 changed, 20 examined... 0 labels changed using aseg 000: 211 total segments, 129 labels (1717 vertices) changed 001: 96 total segments, 14 labels (91 vertices) changed 002: 86 total segments, 4 labels (24 vertices) changed 003: 82 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 29 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... relabeling unknown label... 1261 vertices marked for relabeling... 1261 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 11 seconds. @#@FSTIME 2025:10:22:11:42:38 mris_ca_label N 11 e 10.53 S 1.30 U 9.23 P 99% M 1649236 F 0 R 740644 W 0 c 24 w 1 I 0 O 2048 L 24.16 24.13 24.10 @#@FSLOADPOST 2025:10:22:11:42:49 mris_ca_label N 11 24.21 24.14 24.10 #----------------------------------------- #@# Cortical Parc 2 rh Wed Oct 22 11:42:49 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-01EN91PG_ses-00A rh ../surf/rh.sphere.reg /usr/local/freesurfer/8.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /usr/local/freesurfer/8.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.021 0 singular and 0 ill-conditioned covariance matrices regularized reading surface from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 76 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 0 labels changed using aseg relabeling using gibbs priors... 000: 8599 changed, 129379 examined... 001: 1890 changed, 33829 examined... 002: 554 changed, 10137 examined... 003: 249 changed, 3232 examined... 004: 105 changed, 1469 examined... 005: 63 changed, 607 examined... 006: 32 changed, 372 examined... 007: 19 changed, 176 examined... 008: 8 changed, 107 examined... 009: 4 changed, 45 examined... 010: 3 changed, 24 examined... 011: 3 changed, 18 examined... 012: 1 changed, 12 examined... 013: 1 changed, 8 examined... 014: 2 changed, 6 examined... 015: 2 changed, 10 examined... 016: 1 changed, 14 examined... 017: 1 changed, 7 examined... 018: 0 changed, 6 examined... 1 labels changed using aseg 000: 222 total segments, 137 labels (1460 vertices) changed 001: 93 total segments, 8 labels (26 vertices) changed 002: 85 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 33 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... relabeling unknown label... 1150 vertices marked for relabeling... 1150 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 10 seconds. @#@FSTIME 2025:10:22:11:42:49 mris_ca_label N 11 e 10.15 S 1.13 U 9.02 P 99% M 1693792 F 0 R 647961 W 0 c 14 w 1 I 0 O 2032 L 24.21 24.14 24.10 @#@FSLOADPOST 2025:10:22:11:42:59 mris_ca_label N 11 24.17 24.14 24.10 #----------------------------------------- #@# Cortical Parc 3 lh Wed Oct 22 11:42:59 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-01EN91PG_ses-00A lh ../surf/lh.sphere.reg /usr/local/freesurfer/8.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /usr/local/freesurfer/8.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 383 ill-conditioned covariance matrices regularized reading surface from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1406 labels changed using aseg relabeling using gibbs priors... 000: 1920 changed, 130161 examined... 001: 419 changed, 8973 examined... 002: 119 changed, 2401 examined... 003: 57 changed, 711 examined... 004: 36 changed, 336 examined... 005: 30 changed, 203 examined... 006: 26 changed, 159 examined... 007: 18 changed, 133 examined... 008: 12 changed, 105 examined... 009: 10 changed, 67 examined... 010: 8 changed, 48 examined... 011: 6 changed, 36 examined... 012: 6 changed, 25 examined... 013: 10 changed, 30 examined... 014: 5 changed, 34 examined... 015: 4 changed, 27 examined... 016: 3 changed, 19 examined... 017: 2 changed, 14 examined... 018: 4 changed, 14 examined... 019: 4 changed, 20 examined... 020: 4 changed, 21 examined... 021: 2 changed, 23 examined... 022: 1 changed, 14 examined... 023: 0 changed, 7 examined... 312 labels changed using aseg 000: 50 total segments, 17 labels (292 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 3 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 922 vertices marked for relabeling... 922 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas.annot... classification took 0 minutes and 8 seconds. @#@FSTIME 2025:10:22:11:42:59 mris_ca_label N 11 e 7.56 S 0.55 U 7.00 P 99% M 905464 F 0 R 288709 W 0 c 26 w 1 I 0 O 2040 L 24.17 24.14 24.10 @#@FSLOADPOST 2025:10:22:11:43:06 mris_ca_label N 11 24.24 24.15 24.10 #----------------------------------------- #@# Cortical Parc 3 rh Wed Oct 22 11:43:06 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-01EN91PG_ses-00A rh ../surf/rh.sphere.reg /usr/local/freesurfer/8.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 8.0.0 8.0.0 reading atlas from /usr/local/freesurfer/8.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.009 0 singular and 325 ill-conditioned covariance matrices regularized reading surface from /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.smoothwm... set_atable_from_ctable(): 36 entries GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1389 labels changed using aseg relabeling using gibbs priors... 000: 1965 changed, 129379 examined... 001: 470 changed, 9123 examined... 002: 132 changed, 2700 examined... 003: 52 changed, 795 examined... 004: 29 changed, 315 examined... 005: 15 changed, 167 examined... 006: 7 changed, 79 examined... 007: 1 changed, 37 examined... 008: 0 changed, 7 examined... 156 labels changed using aseg 000: 52 total segments, 19 labels (195 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 6 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1036 vertices marked for relabeling... 1036 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas.annot... classification took 0 minutes and 8 seconds. @#@FSTIME 2025:10:22:11:43:07 mris_ca_label N 11 e 7.70 S 0.54 U 7.16 P 99% M 912932 F 0 R 287022 W 0 c 16 w 1 I 0 O 2032 L 24.24 24.15 24.10 @#@FSLOADPOST 2025:10:22:11:43:14 mris_ca_label N 11 24.20 24.15 24.10 #----------------------------------------- #@# WM/GM Contrast lh Wed Oct 22 11:43:14 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts pctsurfcon --s sub-01EN91PG_ses-00A --lh-only Log file is /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts/pctsurfcon.log Wed Oct 22 11:43:14 CDT 2025 setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts /usr/local/freesurfer/8.0.0/bin/pctsurfcon pctsurfcon 8.0.0 Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer/8.0.0 mri_vol2surf --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138632/lh.wm.mgh --regheader sub-01EN91PG_ses-00A --cortex srcvol = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Reading surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 -1 1 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 75364 Masking with /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138632/lh.wm.mgh Dim: 130161 1 1 mri_vol2surf done mri_vol2surf --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138632/lh.gm.mgh --projfrac 0.3 --regheader sub-01EN91PG_ses-00A --cortex srcvol = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Reading surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Done reading source surface Reading thickness /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface Projecting 0.3 0.3 1 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 88247 Masking with /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138632/lh.gm.mgh Dim: 130161 1 1 mri_vol2surf done mri_concat /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138632/lh.wm.mgh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138632/lh.gm.mgh --paired-diff-norm --mul 100 --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.w-g.pct.mgh mri_segstats --in /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.w-g.pct.mgh --annot sub-01EN91PG_ses-00A lh aparc --sum /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/lh.w-g.pct.stats --snr 8.0.0 cwd cmdline mri_segstats --in /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.w-g.pct.mgh --annot sub-01EN91PG_ses-00A lh aparc --sum /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/lh.w-g.pct.stats --snr sysname Linux hostname bbs96787.local machine x86_64 user kate whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.aparc.annot Seg base 1000 MRISannot2seg(): nhits = 122705 Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.w-g.pct.mgh Vertex Area is 0.690217 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up @#@FSTIME 2025:10:22:11:43:14 pctsurfcon N 3 e 2.59 S 0.39 U 2.19 P 100% M 271968 F 0 R 187664 W 0 c 15 w 64 I 0 O 3104 L 24.20 24.15 24.10 @#@FSLOADPOST 2025:10:22:11:43:17 pctsurfcon N 3 24.20 24.15 24.10 #----------------------------------------- #@# WM/GM Contrast rh Wed Oct 22 11:43:17 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts pctsurfcon --s sub-01EN91PG_ses-00A --rh-only Log file is /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts/pctsurfcon.log Wed Oct 22 11:43:17 CDT 2025 setenv SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 cd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts /usr/local/freesurfer/8.0.0/bin/pctsurfcon pctsurfcon 8.0.0 Linux bbs96787.local 6.8.0-85-generic #85~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Sep 19 16:18:59 UTC 2 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer/8.0.0 mri_vol2surf --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138705/rh.wm.mgh --regheader sub-01EN91PG_ses-00A --cortex srcvol = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Reading surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 -1 1 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 74882 Masking with /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138705/rh.wm.mgh Dim: 129379 1 1 mri_vol2surf done mri_vol2surf --mov /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138705/rh.gm.mgh --projfrac 0.3 --regheader sub-01EN91PG_ses-00A --cortex srcvol = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Reading surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Done reading source surface Reading thickness /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface Projecting 0.3 0.3 1 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 87691 Masking with /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138705/rh.gm.mgh Dim: 129379 1 1 mri_vol2surf done mri_concat /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138705/rh.wm.mgh /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/tmp.pctsurfcon.138705/rh.gm.mgh --paired-diff-norm --mul 100 --o /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.w-g.pct.mgh mri_segstats --in /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.w-g.pct.mgh --annot sub-01EN91PG_ses-00A rh aparc --sum /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/rh.w-g.pct.stats --snr 8.0.0 cwd cmdline mri_segstats --in /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.w-g.pct.mgh --annot sub-01EN91PG_ses-00A rh aparc --sum /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/rh.w-g.pct.stats --snr sysname Linux hostname bbs96787.local machine x86_64 user kate whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.aparc.annot Seg base 2000 MRISannot2seg(): nhits = 121890 Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.w-g.pct.mgh Vertex Area is 0.693608 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up @#@FSTIME 2025:10:22:11:43:17 pctsurfcon N 3 e 2.75 S 0.39 U 2.26 P 96% M 270732 F 0 R 195381 W 0 c 14 w 66 I 0 O 3080 L 24.20 24.15 24.10 @#@FSLOADPOST 2025:10:22:11:43:20 pctsurfcon N 3 24.19 24.14 24.10 #----------------------------------------- #@# Relabel Hypointensities Wed Oct 22 11:43:20 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz reading input surface ../surf/lh.white... relabeling lh hypointensities... 448 voxels changed to hypointensity... reading input surface ../surf/rh.white... relabeling rh hypointensities... 473 voxels changed to hypointensity... 918 hypointense voxels neighboring cortex changed @#@FSTIME 2025:10:22:11:43:20 mri_relabel_hypointensities N 3 e 10.89 S 0.63 U 10.25 P 99% M 469260 F 0 R 336327 W 0 c 21 w 1 I 0 O 808 L 24.19 24.14 24.10 @#@FSLOADPOST 2025:10:22:11:43:31 mri_relabel_hypointensities N 3 24.31 24.17 24.11 #----------------------------------------- #@# APas-to-ASeg Wed Oct 22 11:43:31 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_surf2volseg --o aseg.mgz --i aseg.presurf.hypos.mgz --fix-presurf-with-ribbon /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/ribbon.mgz --threads 1 --lh-cortex-mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label --lh-white /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white --lh-pial /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial --rh-cortex-mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label --rh-white /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white --rh-pial /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 outvol aseg.mgz 64 avail.processors, using 1 Loading aseg.presurf.hypos.mgz Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri/ribbon.mgz Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 0 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 894316 mri_surf2volseg done @#@FSTIME 2025:10:22:11:43:31 mri_surf2volseg N 20 e 4.50 S 0.51 U 3.98 P 100% M 875460 F 0 R 240275 W 0 c 11 w 1 I 0 O 832 L 24.31 24.17 24.11 @#@FSLOADPOST 2025:10:22:11:43:35 mri_surf2volseg N 20 24.28 24.17 24.11 mri_brainvol_stats --subject sub-01EN91PG_ses-00A ComputeBrainVolumeStats2 VoxelVol=1, KeepCSF=1 #CBVS2 MaskVol 1407480.0 #CBVS2 BrainSegVol 1364429.0 #CBVS2 BrainSegVolNotVent 1090135.0 #CBVS2 SupraTentVol 1240842.0 #CBVS2 SupraTentVolNotVent 966548.0 #CBVS2 lhWhiteVol 211303.0 #CBVS2 lhPialVol 496029.9 #CBVS2 lhCtxGM 284726.8 #CBVS2 rhWhiteVol 211358.8 #CBVS2 rhPialVol 495266.6 #CBVS2 rhCtxGM 283907.8 #CBVS2 lhCerebralWM 185355.5 #CBVS2 rhCerebralWM 185655.5 #CBVS2 SubCortGMVol 57309.0 #CBVS2 CerebellumVol 123587.0 #CBVS2 CerebellumGMVol 101834.0 #CBVS2 VentChorVol 6122.0 #CBVS2 3rd4th5thCSF 268172.0 #CBVS2 AllCSF 274294.0 #CBVS2 CCVol 3001.0 @#@FSTIME 2025:10:22:11:43:35 mri_brainvol_stats N 2 e 2.99 S 0.23 U 2.75 P 99% M 216548 F 0 R 109976 W 0 c 8 w 1 I 0 O 8 L 24.28 24.17 24.11 @#@FSLOADPOST 2025:10:22:11:43:38 mri_brainvol_stats N 2 24.28 24.17 24.11 #----------------------------------------- #@# AParc-to-ASeg aparc Wed Oct 22 11:43:38 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_surf2volseg --o aparc+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.aparc.annot 1000 --lh-cortex-mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label --lh-white /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white --lh-pial /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial --rh-annot /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.aparc.annot 2000 --rh-cortex-mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label --rh-white /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white --rh-pial /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 outvol aparc+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 7456 vertices from lh hemi Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.aparc.annot Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 7489 vertices from rh hemi Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 39045 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 875448 mri_surf2volseg done @#@FSTIME 2025:10:22:11:43:38 mri_surf2volseg N 25 e 148.87 S 0.51 U 148.35 P 99% M 857004 F 0 R 235063 W 0 c 213 w 1 I 0 O 944 L 24.26 24.17 24.11 @#@FSLOADPOST 2025:10:22:11:46:07 mri_surf2volseg N 25 24.19 24.18 24.11 #----------------------------------------- #@# AParc-to-ASeg aparc.a2009s Wed Oct 22 11:46:07 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_surf2volseg --o aparc.a2009s+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.aparc.a2009s.annot 11100 --lh-cortex-mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label --lh-white /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white --lh-pial /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial --rh-annot /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.aparc.a2009s.annot 12100 --rh-cortex-mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label --rh-white /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white --rh-pial /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 outvol aparc.a2009s+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 7456 vertices from lh hemi Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.aparc.a2009s.annot Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 7489 vertices from rh hemi Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.aparc.a2009s.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 39045 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 875556 mri_surf2volseg done @#@FSTIME 2025:10:22:11:46:07 mri_surf2volseg N 25 e 126.30 S 0.48 U 125.81 P 99% M 856708 F 0 R 235061 W 0 c 411 w 1 I 0 O 1008 L 24.19 24.18 24.11 @#@FSLOADPOST 2025:10:22:11:48:14 mri_surf2volseg N 25 24.08 24.12 24.09 #----------------------------------------- #@# AParc-to-ASeg aparc.DKTatlas Wed Oct 22 11:48:14 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_surf2volseg --o aparc.DKTatlas+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.aparc.DKTatlas.annot 1000 --lh-cortex-mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label --lh-white /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white --lh-pial /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial --rh-annot /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.aparc.DKTatlas.annot 2000 --rh-cortex-mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label --rh-white /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white --rh-pial /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 outvol aparc.DKTatlas+aseg.mgz 64 avail.processors, using 1 Loading aseg.mgz Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 7456 vertices from lh hemi Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.aparc.DKTatlas.annot Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 7489 vertices from rh hemi Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.aparc.DKTatlas.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 39045 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 875448 mri_surf2volseg done @#@FSTIME 2025:10:22:11:48:14 mri_surf2volseg N 25 e 119.39 S 0.50 U 118.87 P 99% M 857004 F 0 R 235062 W 0 c 134 w 1 I 0 O 944 L 24.08 24.12 24.09 @#@FSLOADPOST 2025:10:22:11:50:13 mri_surf2volseg N 25 24.27 24.17 24.11 #----------------------------------------- #@# WMParc Wed Oct 22 11:50:13 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/mri mri_surf2volseg --o wmparc.mgz --label-wm --i aparc+aseg.mgz --threads 1 --lh-annot /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.aparc.annot 3000 --lh-cortex-mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label --lh-white /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white --lh-pial /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial --rh-annot /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.aparc.annot 4000 --rh-cortex-mask /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label --rh-white /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white --rh-pial /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 outvol wmparc.mgz 64 avail.processors, using 1 Loading aparc+aseg.mgz Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 7456 vertices from lh hemi Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.aparc.annot Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 7489 vertices from rh hemi Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 3700 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 875464 mri_surf2volseg done @#@FSTIME 2025:10:22:11:50:13 mri_surf2volseg N 25 e 25.67 S 0.47 U 25.17 P 99% M 856976 F 0 R 238355 W 0 c 54 w 2 I 0 O 1024 L 24.27 24.17 24.11 @#@FSLOADPOST 2025:10:22:11:50:39 mri_surf2volseg N 25 24.39 24.22 24.13 mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-01EN91PG_ses-00A --surf-wm-vol --ctab /usr/local/freesurfer/8.0.0/WMParcStatsLUT.txt --etiv --stiv /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/synthseg.tiv.dat setting seed for random number genererator to 1234 8.0.0 cwd cmdline mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-01EN91PG_ses-00A --surf-wm-vol --ctab /usr/local/freesurfer/8.0.0/WMParcStatsLUT.txt --etiv --stiv /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/synthseg.tiv.dat sysname Linux hostname bbs96787.local machine x86_64 user kate whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation Reporting on 70 segmentations Using PrintSegStat mri_segstats done @#@FSTIME 2025:10:22:11:50:39 mri_segstats N 26 e 361.15 S 0.94 U 360.20 P 99% M 239616 F 0 R 1246288 W 0 c 592 w 1 I 0 O 24 L 24.39 24.22 24.13 @#@FSLOADPOST 2025:10:22:11:56:40 mri_segstats N 26 24.21 24.20 24.12 #----------------------------------------- #@# Parcellation Stats lh Wed Oct 22 11:56:40 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-01EN91PG_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 284653 Total vertex volume 284504 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 1357 864 2486 2.946 0.384 0.065 0.009 4 0.5 bankssts 890 589 1811 2.544 0.884 0.117 0.018 10 0.7 caudalanteriorcingulate 3164 2183 7366 2.950 0.515 0.106 0.019 28 2.4 caudalmiddlefrontal 2461 1686 4159 2.293 0.559 0.139 0.030 32 2.9 cuneus 824 518 1845 2.978 1.036 0.120 0.033 11 1.3 entorhinal 4432 3121 11708 3.113 0.640 0.129 0.026 55 5.0 fusiform 6100 4340 14027 2.815 0.517 0.114 0.021 72 4.9 inferiorparietal 4458 3293 12183 3.094 0.659 0.127 0.027 72 5.3 inferiortemporal 1492 1021 3218 2.633 0.933 0.123 0.030 21 1.7 isthmuscingulate 6955 4685 13112 2.431 0.582 0.129 0.028 99 7.5 lateraloccipital 3583 2531 9129 3.242 0.710 0.116 0.026 39 4.3 lateralorbitofrontal 3641 2503 6669 2.401 0.666 0.129 0.029 43 4.2 lingual 2512 1860 6356 2.718 0.771 0.124 0.036 40 3.7 medialorbitofrontal 3800 2579 11502 3.266 0.673 0.101 0.021 44 2.9 middletemporal 898 612 2354 3.136 0.667 0.113 0.028 11 0.9 parahippocampal 2148 1377 4497 2.939 0.609 0.096 0.018 54 1.9 paracentral 2127 1525 5675 3.107 0.527 0.111 0.021 29 1.8 parsopercularis 869 653 2567 3.010 0.688 0.135 0.031 16 1.2 parsorbitalis 2039 1393 5016 2.918 0.594 0.097 0.016 19 1.3 parstriangularis 1906 1417 2374 1.852 0.465 0.128 0.029 19 2.0 pericalcarine 6052 3999 10785 2.326 0.648 0.105 0.020 62 5.0 postcentral 1579 1087 3352 2.701 0.878 0.109 0.017 15 1.3 posteriorcingulate 7294 4785 15466 2.916 0.471 0.098 0.017 56 5.3 precentral 6081 4192 12592 2.764 0.506 0.113 0.021 65 5.3 precuneus 1359 959 3387 2.870 0.848 0.128 0.030 19 1.6 rostralanteriorcingulate 7898 5786 19259 2.762 0.587 0.118 0.024 93 7.7 rostralmiddlefrontal 10843 7732 29734 3.203 0.615 0.119 0.025 116 10.9 superiorfrontal 8192 5605 15795 2.538 0.447 0.113 0.021 86 6.8 superiorparietal 5769 4067 16141 3.233 0.658 0.112 0.022 64 5.2 superiortemporal 6953 4860 16609 2.892 0.576 0.109 0.020 75 5.5 supramarginal 307 286 1370 3.082 0.940 0.197 0.053 9 0.7 frontalpole 584 431 2487 3.541 0.803 0.117 0.029 7 0.6 temporalpole 700 450 1716 2.983 0.424 0.096 0.017 7 0.4 transversetemporal 3437 2370 7758 3.174 0.961 0.117 0.033 36 4.4 insula mris_anatomical_stats done @#@FSTIME 2025:10:22:11:56:40 mris_anatomical_stats N 14 e 6.02 S 0.26 U 5.76 P 100% M 444048 F 0 R 128012 W 0 c 16 w 1 I 0 O 24 L 24.21 24.20 24.12 @#@FSLOADPOST 2025:10:22:11:56:46 mris_anatomical_stats N 14 24.19 24.19 24.12 mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-01EN91PG_ses-00A lh pial computing statistics for each annotation in ../label/lh.aparc.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 284653 Total vertex volume 284504 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 1357 815 2486 2.946 0.384 0.104 0.029 16 1.6 bankssts 890 785 1811 2.544 0.884 0.177 0.049 56 1.6 caudalanteriorcingulate 3164 2659 7366 2.950 0.515 0.135 0.029 37 3.8 caudalmiddlefrontal 2461 2078 4159 2.293 0.559 0.147 0.038 66 3.9 cuneus 824 815 1845 2.978 1.036 0.218 0.079 26 2.6 entorhinal 4432 4298 11708 3.113 0.640 0.176 0.046 375 8.5 fusiform 6100 5639 14027 2.815 0.517 0.155 0.037 223 9.0 inferiorparietal 4458 4429 12183 3.094 0.659 0.180 0.046 138 8.2 inferiortemporal 1492 1438 3218 2.633 0.933 0.199 0.060 40 3.5 isthmuscingulate 6955 6077 13112 2.431 0.582 0.148 0.082 152 10.3 lateraloccipital 3583 3120 9129 3.242 0.710 0.155 0.040 81 6.3 lateralorbitofrontal 3641 3216 6669 2.401 0.666 0.162 0.046 127 7.1 lingual 2512 2705 6356 2.718 0.771 0.197 0.054 53 5.6 medialorbitofrontal 3800 4120 11502 3.266 0.673 0.169 0.035 113 6.0 middletemporal 898 929 2354 3.136 0.667 0.240 0.062 26 3.0 parahippocampal 2148 1693 4497 2.939 0.609 0.122 0.028 24 2.6 paracentral 2127 2056 5675 3.107 0.527 0.165 0.037 39 3.4 parsopercularis 869 1003 2567 3.010 0.688 0.194 0.043 21 1.4 parsorbitalis 2039 1951 5016 2.918 0.594 0.159 0.033 29 2.9 parstriangularis 1906 1177 2374 1.852 0.465 0.122 0.033 47 2.4 pericalcarine 6052 5200 10785 2.326 0.648 0.144 0.034 97 9.1 postcentral 1579 1385 3352 2.701 0.878 0.168 0.047 88 3.1 posteriorcingulate 7294 5649 15466 2.916 0.471 0.123 0.030 118 8.4 precentral 6081 4871 12592 2.764 0.506 0.148 0.038 125 9.8 precuneus 1359 1379 3387 2.870 0.848 0.202 0.058 29 3.3 rostralanteriorcingulate 7898 7780 19259 2.762 0.587 0.171 0.037 212 12.6 rostralmiddlefrontal 10843 10370 29734 3.203 0.615 0.160 0.043 266 17.1 superiorfrontal 8192 6791 15795 2.538 0.447 0.142 0.116 206 11.2 superiorparietal 5769 5594 16141 3.233 0.658 0.178 0.049 182 11.5 superiortemporal 6953 6312 16609 2.892 0.576 0.150 0.032 106 9.7 supramarginal 307 600 1370 3.082 0.940 0.306 0.043 6 0.7 frontalpole 584 964 2487 3.541 0.803 0.255 0.050 10 1.5 temporalpole 700 754 1716 2.983 0.424 0.179 0.047 8 1.3 transversetemporal 3437 2428 7758 3.174 0.961 0.169 0.056 107 8.0 insula mris_anatomical_stats done @#@FSTIME 2025:10:22:11:56:46 mris_anatomical_stats N 14 e 6.38 S 0.26 U 6.07 P 99% M 444048 F 0 R 128011 W 0 c 11 w 5 I 0 O 24 L 24.19 24.19 24.12 @#@FSLOADPOST 2025:10:22:11:56:52 mris_anatomical_stats N 14 24.26 24.21 24.13 #----------------------------------------- #@# Parcellation Stats rh Wed Oct 22 11:56:52 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-01EN91PG_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 283936 Total vertex volume 283778 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 1076 714 2254 3.036 0.397 0.089 0.014 7 0.7 bankssts 1024 699 2187 2.763 0.665 0.125 0.026 17 0.9 caudalanteriorcingulate 2900 1945 6322 2.931 0.474 0.099 0.017 22 2.0 caudalmiddlefrontal 2446 1630 4361 2.326 0.620 0.134 0.029 32 3.0 cuneus 611 381 1749 3.606 0.989 0.093 0.024 3 0.6 entorhinal 4584 3148 11511 3.077 0.580 0.109 0.022 45 3.9 fusiform 7634 5454 19050 2.962 0.522 0.118 0.023 95 6.9 inferiorparietal 4056 2881 11541 3.209 0.740 0.108 0.022 44 3.6 inferiortemporal 1421 1014 3199 2.666 0.963 0.118 0.024 18 1.4 isthmuscingulate 7428 5054 14793 2.595 0.611 0.132 0.029 92 8.8 lateraloccipital 3408 2485 8683 3.100 0.699 0.124 0.027 51 3.9 lateralorbitofrontal 3829 2756 6760 2.353 0.622 0.133 0.032 45 5.0 lingual 2957 2125 6901 2.761 0.635 0.110 0.023 36 2.3 medialorbitofrontal 3921 2853 11809 3.165 0.717 0.115 0.023 50 3.5 middletemporal 854 524 1900 3.032 0.800 0.094 0.020 6 0.5 parahippocampal 2241 1434 4443 2.890 0.546 0.103 0.018 15 1.7 paracentral 2103 1473 4907 2.929 0.389 0.103 0.021 23 1.7 parsopercularis 996 762 3144 3.034 0.741 0.133 0.028 16 1.0 parsorbitalis 2068 1456 5091 2.950 0.541 0.108 0.019 22 1.5 parstriangularis 1960 1435 2404 1.990 0.572 0.125 0.022 18 2.0 pericalcarine 6090 3954 10709 2.358 0.620 0.092 0.016 51 3.9 postcentral 1754 1190 3704 2.678 0.946 0.108 0.020 15 1.4 posteriorcingulate 6883 4605 14991 2.900 0.501 0.099 0.017 49 5.1 precentral 6515 4522 13817 2.797 0.551 0.112 0.022 69 5.9 precuneus 882 655 2299 2.777 0.828 0.126 0.036 14 1.2 rostralanteriorcingulate 7883 6095 20622 2.742 0.600 0.133 0.033 120 10.3 rostralmiddlefrontal 10742 7570 28828 3.149 0.589 0.114 0.022 112 9.7 superiorfrontal 8810 5958 17517 2.642 0.451 0.112 0.020 94 7.3 superiorparietal 4763 3330 13869 3.293 0.676 0.110 0.023 50 4.5 superiortemporal 4913 3481 11504 2.892 0.555 0.109 0.021 55 4.1 supramarginal 446 352 1691 3.184 0.700 0.163 0.041 11 0.8 frontalpole 593 486 2718 3.646 0.938 0.150 0.040 10 1.2 temporalpole 466 298 1068 2.905 0.448 0.085 0.017 3 0.3 transversetemporal 3633 2502 7429 2.974 0.778 0.112 0.032 35 4.5 insula mris_anatomical_stats done @#@FSTIME 2025:10:22:11:56:52 mris_anatomical_stats N 14 e 6.14 S 0.28 U 5.83 P 99% M 441380 F 0 R 124912 W 0 c 19 w 4 I 0 O 24 L 24.26 24.21 24.13 @#@FSLOADPOST 2025:10:22:11:56:59 mris_anatomical_stats N 14 24.22 24.20 24.13 mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-01EN91PG_ses-00A rh pial computing statistics for each annotation in ../label/rh.aparc.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 283936 Total vertex volume 283778 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 1076 756 2254 3.036 0.397 0.115 0.030 14 1.3 bankssts 1024 917 2187 2.763 0.665 0.197 0.060 65 2.3 caudalanteriorcingulate 2900 2278 6322 2.931 0.474 0.127 0.030 45 3.5 caudalmiddlefrontal 2446 2269 4361 2.326 0.620 0.171 0.050 54 5.1 cuneus 611 683 1749 3.606 0.989 0.275 0.114 32 3.0 entorhinal 4584 4294 11511 3.077 0.580 0.166 0.042 90 8.3 fusiform 7634 7247 19050 2.962 0.522 0.155 0.037 212 11.8 inferiorparietal 4056 4163 11541 3.209 0.740 0.170 0.041 88 6.8 inferiortemporal 1421 1417 3199 2.666 0.963 0.208 0.056 50 3.5 isthmuscingulate 7428 6319 14793 2.595 0.611 0.151 0.039 161 12.0 lateraloccipital 3408 3273 8683 3.100 0.699 0.182 0.049 107 6.8 lateralorbitofrontal 3829 3336 6760 2.353 0.622 0.157 0.048 115 6.4 lingual 2957 2915 6901 2.761 0.635 0.181 0.057 76 5.8 medialorbitofrontal 3921 4154 11809 3.165 0.717 0.170 0.038 79 6.4 middletemporal 854 750 1900 3.032 0.800 0.187 0.048 20 2.1 parahippocampal 2241 1587 4443 2.890 0.546 0.116 0.028 31 2.6 paracentral 2103 1904 4907 2.929 0.389 0.162 0.038 40 3.5 parsopercularis 996 1237 3144 3.034 0.741 0.213 0.041 18 1.7 parsorbitalis 2068 1958 5091 2.950 0.541 0.162 0.038 39 3.1 parstriangularis 1960 1157 2404 1.990 0.572 0.114 0.033 35 2.3 pericalcarine 6090 5117 10709 2.358 0.620 0.131 0.029 73 7.6 postcentral 1754 1522 3704 2.678 0.946 0.167 0.048 53 3.1 posteriorcingulate 6883 5492 14991 2.900 0.501 0.128 0.030 117 8.2 precentral 6515 5308 13817 2.797 0.551 0.146 0.045 261 10.0 precuneus 882 985 2299 2.777 0.828 0.224 0.070 27 2.7 rostralanteriorcingulate 7883 8441 20622 2.742 0.600 0.192 0.042 2829 14.9 rostralmiddlefrontal 10742 10358 28828 3.149 0.589 0.157 0.036 176 16.2 superiorfrontal 8810 7292 17517 2.642 0.451 0.139 0.033 155 11.5 superiorparietal 4763 4905 13869 3.293 0.676 0.185 0.049 114 10.0 superiortemporal 4913 4374 11504 2.892 0.555 0.155 0.036 85 7.7 supramarginal 446 738 1691 3.184 0.700 0.286 0.072 25 1.2 frontalpole 593 994 2718 3.646 0.938 0.273 0.060 24 1.6 temporalpole 466 467 1068 2.905 0.448 0.198 0.063 7 1.4 transversetemporal 3633 2604 7429 2.974 0.778 0.185 0.067 228 10.0 insula mris_anatomical_stats done @#@FSTIME 2025:10:22:11:56:59 mris_anatomical_stats N 14 e 6.07 S 0.26 U 5.75 P 99% M 441776 F 0 R 121594 W 0 c 16 w 5 I 0 O 24 L 24.22 24.20 24.13 @#@FSLOADPOST 2025:10:22:11:57:05 mris_anatomical_stats N 14 24.20 24.20 24.13 #----------------------------------------- #@# Parcellation Stats 2 lh Wed Oct 22 11:57:05 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-01EN91PG_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 284653 Total vertex volume 284504 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 1166 927 3209 2.791 0.722 0.136 0.029 14 1.5 G_and_S_frontomargin 1398 928 3085 2.737 0.600 0.128 0.026 17 1.4 G_and_S_occipital_inf 1544 995 3477 2.825 0.658 0.112 0.023 58 1.7 G_and_S_paracentral 1577 1149 4361 3.065 0.518 0.132 0.027 26 1.8 G_and_S_subcentral 758 650 2703 2.854 0.725 0.167 0.044 22 1.4 G_and_S_transv_frontopol 2229 1603 5539 3.002 0.607 0.121 0.025 24 2.4 G_and_S_cingul-Ant 1216 816 2478 2.938 0.545 0.097 0.015 6 0.8 G_and_S_cingul-Mid-Ant 1137 765 2573 3.109 0.543 0.107 0.019 7 1.0 G_and_S_cingul-Mid-Post 572 414 1998 3.310 0.619 0.143 0.033 10 0.7 G_cingul-Post-dorsal 295 188 846 3.159 0.938 0.139 0.053 7 0.6 G_cingul-Post-ventral 2065 1445 3730 2.202 0.593 0.148 0.035 32 2.7 G_cuneus 1167 907 4262 3.407 0.409 0.139 0.028 27 1.4 G_front_inf-Opercular 417 288 1371 3.194 0.541 0.140 0.032 9 0.6 G_front_inf-Orbital 1176 835 3875 3.213 0.533 0.115 0.020 17 1.0 G_front_inf-Triangul 4379 3224 13229 2.994 0.589 0.132 0.030 72 5.0 G_front_middle 7468 5394 24105 3.420 0.570 0.129 0.028 97 8.1 G_front_sup 738 550 1659 2.870 1.086 0.151 0.054 14 1.6 G_Ins_lg_and_S_cent_ins 678 485 2609 3.782 0.711 0.121 0.033 9 0.8 G_insular_short 2149 1522 6088 2.857 0.569 0.135 0.031 47 2.4 G_occipital_middle 1157 829 2140 2.251 0.425 0.131 0.029 16 1.2 G_occipital_sup 1608 1159 4941 3.215 0.549 0.138 0.033 29 2.0 G_oc-temp_lat-fusifor 2472 1705 5208 2.431 0.721 0.144 0.034 38 3.3 G_oc-temp_med-Lingual 1560 1031 4456 3.083 1.000 0.128 0.035 25 2.3 G_oc-temp_med-Parahip 2070 1590 7125 3.362 0.719 0.133 0.036 38 3.3 G_orbital 2648 1956 7658 3.003 0.507 0.125 0.025 46 2.7 G_pariet_inf-Angular 3308 2418 9541 3.019 0.599 0.122 0.025 47 2.9 G_pariet_inf-Supramar 3540 2495 8275 2.614 0.482 0.124 0.025 50 3.6 G_parietal_sup 2222 1410 4384 2.381 0.527 0.107 0.020 25 1.8 G_postcentral 2842 1843 7634 3.112 0.400 0.106 0.020 29 2.3 G_precentral 3002 2126 8144 2.905 0.536 0.131 0.027 50 3.1 G_precuneus 894 760 3373 3.094 0.646 0.159 0.056 26 2.4 G_rectus 698 418 1119 2.417 1.089 0.112 0.052 8 1.0 G_subcallosal 641 413 1888 3.124 0.419 0.102 0.019 8 0.4 G_temp_sup-G_T_transv 2125 1612 8463 3.547 0.618 0.147 0.034 41 2.9 G_temp_sup-Lateral 648 464 2089 3.674 0.574 0.088 0.017 3 0.4 G_temp_sup-Plan_polar 1009 685 2869 3.218 0.683 0.091 0.019 12 0.7 G_temp_sup-Plan_tempo 2121 1681 8041 3.449 0.633 0.153 0.037 58 3.3 G_temporal_inf 2032 1365 7585 3.484 0.666 0.111 0.025 33 1.8 G_temporal_middle 382 244 499 2.437 0.388 0.081 0.009 1 0.1 Lat_Fis-ant-Horizont 409 277 639 2.615 0.382 0.074 0.009 1 0.1 Lat_Fis-ant-Vertical 1065 701 1516 2.704 0.379 0.103 0.017 6 0.8 Lat_Fis-post 2187 1413 3489 2.153 0.577 0.138 0.032 33 2.8 Pole_occipital 1461 1101 5757 3.451 0.845 0.133 0.033 20 1.9 Pole_temporal 2377 1754 3115 2.054 0.604 0.122 0.026 22 2.4 S_calcarine 3196 2103 3955 2.185 0.553 0.092 0.015 16 2.1 S_central 1254 809 1881 2.661 0.386 0.076 0.009 4 0.5 S_cingul-Marginalis 564 369 949 3.028 0.479 0.083 0.013 2 0.3 S_circular_insula_ant 1496 973 2755 3.331 0.777 0.078 0.014 5 1.0 S_circular_insula_inf 1775 1171 2843 2.916 0.604 0.100 0.018 8 1.5 S_circular_insula_sup 1406 917 2405 2.882 0.538 0.092 0.014 7 0.8 S_collat_transv_ant 349 231 512 2.390 0.421 0.099 0.015 2 0.2 S_collat_transv_post 1960 1307 3222 2.627 0.449 0.088 0.013 9 1.0 S_front_inf 1307 939 2487 2.559 0.550 0.104 0.018 7 1.0 S_front_middle 2893 1972 4900 2.726 0.364 0.091 0.016 16 2.0 S_front_sup 725 469 985 2.519 0.278 0.080 0.009 2 0.3 S_interm_prim-Jensen 3312 2181 4964 2.576 0.398 0.090 0.012 16 1.8 S_intrapariet_and_P_trans 1292 868 1826 2.379 0.363 0.110 0.018 9 1.0 S_oc_middle_and_Lunatus 1224 826 1801 2.398 0.420 0.110 0.019 11 0.9 S_oc_sup_and_transversal 687 452 949 2.535 0.350 0.090 0.013 3 0.4 S_occipital_ant 883 619 1417 2.619 0.423 0.115 0.022 6 0.9 S_oc-temp_lat 1704 1159 2993 2.868 0.501 0.109 0.019 11 1.5 S_oc-temp_med_and_Lingual 338 244 571 2.508 0.306 0.101 0.013 2 0.2 S_orbital_lateral 537 379 796 2.389 0.541 0.112 0.021 4 0.4 S_orbital_med-olfact 1341 901 3061 3.393 0.703 0.106 0.019 9 1.2 S_orbital-H_Shaped 2405 1614 3731 2.581 0.499 0.101 0.016 16 1.7 S_parieto_occipital 1369 900 1326 1.697 0.589 0.103 0.018 17 1.0 S_pericallosal 2945 1972 4505 2.466 0.480 0.098 0.017 18 2.0 S_postcentral 1502 969 2327 2.787 0.359 0.068 0.009 3 0.6 S_precentral-inf-part 1338 883 2156 2.772 0.380 0.097 0.015 7 0.9 S_precentral-sup-part 694 486 1039 2.312 0.519 0.101 0.011 3 0.4 S_suborbital 1189 802 1828 2.608 0.408 0.103 0.019 6 0.9 S_subparietal 1380 958 2451 2.803 0.375 0.107 0.016 9 1.2 S_temporal_inf 4600 3051 8152 2.849 0.447 0.085 0.014 22 2.6 S_temporal_sup 433 295 567 2.404 0.320 0.101 0.011 2 0.2 S_temporal_transverse mris_anatomical_stats done @#@FSTIME 2025:10:22:11:57:05 mris_anatomical_stats N 14 e 6.27 S 0.27 U 5.94 P 99% M 444084 F 0 R 128012 W 0 c 10 w 2 I 0 O 48 L 24.20 24.20 24.13 @#@FSLOADPOST 2025:10:22:11:57:11 mris_anatomical_stats N 14 24.27 24.21 24.13 #----------------------------------------- #@# Parcellation Stats 2 rh Wed Oct 22 11:57:11 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-01EN91PG_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 283936 Total vertex volume 283778 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 1015 794 2972 2.964 0.687 0.150 0.035 17 1.6 G_and_S_frontomargin 1160 783 3026 2.956 0.749 0.127 0.028 15 1.3 G_and_S_occipital_inf 1278 815 2729 2.663 0.583 0.116 0.024 12 1.3 G_and_S_paracentral 1475 1064 4104 3.043 0.500 0.114 0.022 20 1.4 G_and_S_subcentral 1105 847 3440 2.957 0.651 0.125 0.030 15 1.3 G_and_S_transv_frontopol 2966 2090 6553 2.892 0.531 0.110 0.025 33 2.6 G_and_S_cingul-Ant 1547 1025 3306 2.938 0.476 0.106 0.021 16 1.1 G_and_S_cingul-Mid-Ant 1341 904 2925 3.021 0.503 0.104 0.020 9 1.0 G_and_S_cingul-Mid-Post 570 416 1925 3.252 0.882 0.141 0.030 11 0.7 G_cingul-Post-dorsal 300 203 934 3.269 0.820 0.141 0.034 5 0.4 G_cingul-Post-ventral 2182 1503 3806 2.178 0.694 0.142 0.032 31 2.9 G_cuneus 1281 936 3983 3.135 0.480 0.109 0.024 19 1.1 G_front_inf-Opercular 318 222 1095 3.405 0.562 0.122 0.026 4 0.3 G_front_inf-Orbital 870 654 2947 3.119 0.499 0.124 0.026 15 0.8 G_front_inf-Triangul 3518 2813 11915 2.977 0.579 0.142 0.036 68 4.8 G_front_middle 7073 5082 22575 3.343 0.581 0.125 0.026 95 7.2 G_front_sup 834 603 1749 2.852 0.979 0.119 0.039 10 1.1 G_Ins_lg_and_S_cent_ins 511 371 1979 3.599 0.665 0.125 0.046 9 0.7 G_insular_short 2341 1627 6769 3.047 0.500 0.128 0.028 39 2.6 G_occipital_middle 1568 1011 3331 2.698 0.461 0.125 0.027 19 1.7 G_occipital_sup 2050 1337 5590 3.254 0.499 0.113 0.024 26 1.9 G_oc-temp_lat-fusifor 2268 1677 4443 2.319 0.659 0.148 0.040 34 3.5 G_oc-temp_med-Lingual 1252 801 3849 3.409 1.059 0.109 0.034 14 1.3 G_oc-temp_med-Parahip 2355 1915 8771 3.254 0.722 0.145 0.039 50 3.3 G_orbital 2610 1913 8867 3.270 0.570 0.127 0.025 48 2.3 G_pariet_inf-Angular 2272 1699 6882 3.094 0.619 0.125 0.026 40 2.3 G_pariet_inf-Supramar 2836 1922 7299 2.850 0.457 0.125 0.024 47 2.8 G_parietal_sup 2173 1367 4260 2.390 0.528 0.101 0.019 24 1.6 G_postcentral 2367 1592 6573 3.099 0.406 0.103 0.018 22 1.7 G_precentral 2944 2090 7973 2.915 0.525 0.121 0.025 46 3.0 G_precuneus 773 598 2505 2.811 0.711 0.142 0.038 17 1.1 G_rectus 497 302 729 2.404 0.896 0.097 0.039 5 0.7 G_subcallosal 426 258 1043 3.008 0.503 0.097 0.019 3 0.3 G_temp_sup-G_T_transv 1706 1284 7506 3.712 0.620 0.145 0.036 31 2.6 G_temp_sup-Lateral 669 486 1689 3.193 0.981 0.107 0.032 5 0.8 G_temp_sup-Plan_polar 691 465 1533 2.902 0.395 0.063 0.009 2 0.2 G_temp_sup-Plan_tempo 2067 1510 7785 3.583 0.708 0.121 0.030 34 2.4 G_temporal_inf 2093 1625 8006 3.357 0.696 0.127 0.027 36 2.0 G_temporal_middle 404 267 659 2.897 0.483 0.090 0.009 2 0.1 Lat_Fis-ant-Horizont 278 184 435 2.533 0.474 0.089 0.018 1 0.1 Lat_Fis-ant-Vertical 1381 913 2045 2.762 0.367 0.092 0.016 7 0.9 Lat_Fis-post 3208 2248 5699 2.276 0.542 0.150 0.035 51 4.6 Pole_occipital 1554 1254 6634 3.485 0.815 0.145 0.035 26 2.4 Pole_temporal 2132 1475 2870 2.348 0.763 0.110 0.019 14 1.8 S_calcarine 2833 1842 3561 2.215 0.578 0.087 0.016 12 1.8 S_central 1263 850 2118 2.689 0.490 0.083 0.011 5 0.6 S_cingul-Marginalis 521 343 885 3.026 0.532 0.083 0.014 2 0.3 S_circular_insula_ant 1124 728 1848 3.102 0.586 0.074 0.013 3 0.6 S_circular_insula_inf 1617 1056 2561 2.911 0.415 0.096 0.016 6 1.3 S_circular_insula_sup 1244 841 2193 2.823 0.492 0.093 0.013 6 0.8 S_collat_transv_ant 486 356 983 2.628 0.615 0.144 0.031 6 0.6 S_collat_transv_post 1888 1297 3019 2.543 0.411 0.103 0.019 16 1.5 S_front_inf 1933 1442 3964 2.622 0.524 0.127 0.028 24 2.3 S_front_middle 2832 1867 4675 2.742 0.405 0.086 0.013 11 1.7 S_front_sup 281 192 577 2.865 0.580 0.088 0.017 2 0.2 S_interm_prim-Jensen 4234 2886 6491 2.554 0.378 0.101 0.015 26 3.1 S_intrapariet_and_P_trans 1097 752 1550 2.516 0.446 0.116 0.022 7 1.1 S_oc_middle_and_Lunatus 1464 1013 2507 2.511 0.398 0.104 0.018 10 1.0 S_oc_sup_and_transversal 901 614 1484 2.692 0.349 0.095 0.017 4 0.7 S_occipital_ant 1034 700 1779 2.745 0.499 0.083 0.011 3 0.5 S_oc-temp_lat 1919 1260 3135 2.746 0.468 0.087 0.013 9 1.0 S_oc-temp_med_and_Lingual 403 275 585 2.488 0.364 0.105 0.020 2 0.3 S_orbital_lateral 674 452 939 2.410 0.402 0.096 0.014 4 0.4 S_orbital_med-olfact 1366 968 2956 3.068 0.685 0.126 0.021 18 1.5 S_orbital-H_Shaped 2621 1768 4335 2.677 0.557 0.108 0.020 19 2.2 S_parieto_occipital 1479 1028 1575 1.823 0.680 0.117 0.020 18 1.4 S_pericallosal 2782 1854 3837 2.380 0.367 0.097 0.015 18 1.8 S_postcentral 1863 1276 3665 2.861 0.400 0.087 0.013 12 1.1 S_precentral-inf-part 1409 906 2091 2.830 0.390 0.091 0.013 6 0.9 S_precentral-sup-part 380 276 744 2.841 0.700 0.122 0.019 3 0.3 S_suborbital 1449 1001 2353 2.552 0.407 0.102 0.017 8 1.0 S_subparietal 1051 711 1605 2.690 0.485 0.098 0.013 5 0.8 S_temporal_inf 5250 3562 9661 2.877 0.442 0.101 0.018 37 4.1 S_temporal_sup 233 161 393 2.738 0.424 0.109 0.012 1 0.2 S_temporal_transverse mris_anatomical_stats done @#@FSTIME 2025:10:22:11:57:11 mris_anatomical_stats N 14 e 6.20 S 0.27 U 5.87 P 99% M 441852 F 0 R 121588 W 0 c 15 w 5 I 0 O 48 L 24.27 24.21 24.13 @#@FSLOADPOST 2025:10:22:11:57:17 mris_anatomical_stats N 14 24.24 24.21 24.13 #----------------------------------------- #@# Parcellation Stats 3 lh Wed Oct 22 11:57:17 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-01EN91PG_ses-00A lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 284653 Total vertex volume 284504 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 1650 1071 3662 2.852 0.838 0.108 0.019 16 1.2 caudalanteriorcingulate 3351 2322 7857 2.955 0.513 0.108 0.019 31 2.6 caudalmiddlefrontal 3285 2232 5580 2.352 0.568 0.133 0.028 41 3.7 cuneus 799 499 1837 2.924 1.071 0.120 0.034 11 1.3 entorhinal 3972 2785 9930 3.054 0.614 0.126 0.025 49 4.1 fusiform 6496 4603 14931 2.810 0.518 0.112 0.020 75 5.2 inferiorparietal 4519 3366 13441 3.192 0.674 0.130 0.028 76 5.7 inferiortemporal 1501 1032 3262 2.661 0.921 0.124 0.030 22 1.7 isthmuscingulate 7016 4711 13263 2.436 0.575 0.129 0.029 101 7.7 lateraloccipital 3823 2799 10638 3.240 0.790 0.122 0.030 48 5.2 lateralorbitofrontal 3765 2595 6816 2.380 0.670 0.130 0.029 45 4.3 lingual 2111 1562 5310 2.673 0.789 0.130 0.040 37 3.5 medialorbitofrontal 5090 3419 13608 3.156 0.643 0.097 0.019 50 3.6 middletemporal 936 633 2447 3.152 0.663 0.114 0.028 12 1.0 parahippocampal 2525 1632 5541 3.021 0.603 0.099 0.020 57 2.2 paracentral 1929 1398 5137 3.126 0.528 0.116 0.022 27 1.7 parsopercularis 1097 757 2549 2.851 0.598 0.110 0.020 10 0.9 parsorbitalis 2376 1612 5781 2.903 0.581 0.093 0.015 21 1.4 parstriangularis 1872 1396 2332 1.864 0.470 0.127 0.029 18 2.0 pericalcarine 6905 4554 12292 2.371 0.637 0.106 0.020 70 5.8 postcentral 1732 1181 3550 2.712 0.850 0.108 0.018 16 1.4 posteriorcingulate 7275 4748 15413 2.917 0.469 0.098 0.018 57 5.2 precentral 5836 4047 12401 2.756 0.512 0.114 0.021 66 5.0 precuneus 1742 1234 4269 2.886 0.812 0.125 0.029 23 2.0 rostralanteriorcingulate 5576 4095 13821 2.780 0.588 0.118 0.025 67 5.3 rostralmiddlefrontal 11675 8502 31920 3.104 0.652 0.123 0.026 140 12.6 superiorfrontal 6598 4548 12695 2.536 0.433 0.113 0.021 68 5.5 superiorparietal 7333 5139 20279 3.195 0.686 0.108 0.022 76 6.7 superiortemporal 6372 4468 15258 2.892 0.586 0.108 0.020 68 5.0 supramarginal 709 455 1728 2.983 0.427 0.098 0.017 7 0.4 transversetemporal 2839 1963 6958 3.367 0.873 0.109 0.027 26 3.0 insula mris_anatomical_stats done @#@FSTIME 2025:10:22:11:57:17 mris_anatomical_stats N 14 e 6.20 S 0.26 U 5.93 P 99% M 444060 F 0 R 128013 W 0 c 11 w 1 I 0 O 24 L 24.24 24.21 24.13 @#@FSLOADPOST 2025:10:22:11:57:24 mris_anatomical_stats N 14 24.21 24.20 24.13 #----------------------------------------- #@# Parcellation Stats 3 rh Wed Oct 22 11:57:24 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-01EN91PG_ses-00A rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 283936 Total vertex volume 283778 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 1257 847 2828 2.815 0.685 0.124 0.026 20 1.1 caudalanteriorcingulate 3027 2032 6521 2.912 0.457 0.100 0.017 24 2.1 caudalmiddlefrontal 3057 2044 5333 2.332 0.598 0.129 0.027 36 3.5 cuneus 599 366 1737 3.605 0.998 0.092 0.024 3 0.6 entorhinal 4213 2863 10348 3.084 0.558 0.106 0.021 40 3.4 fusiform 7577 5407 18812 2.960 0.525 0.118 0.023 95 6.9 inferiorparietal 4465 3207 13008 3.200 0.752 0.112 0.023 51 4.2 inferiortemporal 1405 1003 3138 2.670 0.952 0.118 0.024 18 1.5 isthmuscingulate 7468 5079 14721 2.586 0.596 0.132 0.029 93 8.9 lateraloccipital 4076 3084 11381 3.067 0.740 0.137 0.033 69 5.6 lateralorbitofrontal 3724 2682 6557 2.343 0.621 0.132 0.032 44 4.8 lingual 2311 1658 5800 2.767 0.714 0.126 0.033 38 2.9 medialorbitofrontal 4743 3404 13422 3.125 0.671 0.112 0.021 56 4.0 middletemporal 890 549 1995 3.046 0.813 0.094 0.021 7 0.5 parahippocampal 2367 1522 4810 2.910 0.551 0.103 0.018 16 1.8 paracentral 2363 1665 5434 2.896 0.415 0.104 0.021 25 1.8 parsopercularis 912 653 2556 3.004 0.727 0.112 0.024 10 0.8 parsorbitalis 2054 1427 4976 2.963 0.528 0.110 0.020 22 1.6 parstriangularis 1924 1408 2356 1.995 0.567 0.126 0.022 17 1.9 pericalcarine 6644 4326 11760 2.372 0.629 0.094 0.016 56 4.4 postcentral 1932 1295 4164 2.726 0.924 0.109 0.020 18 1.6 posteriorcingulate 6654 4441 14569 2.896 0.508 0.098 0.017 46 4.8 precentral 6598 4618 14419 2.811 0.541 0.114 0.023 74 6.1 precuneus 1178 839 2674 2.692 0.821 0.116 0.030 15 1.3 rostralanteriorcingulate 5443 4250 14227 2.693 0.593 0.134 0.032 85 6.9 rostralmiddlefrontal 13234 9479 34539 3.071 0.600 0.114 0.023 142 12.1 superiorfrontal 7496 5047 14860 2.653 0.435 0.109 0.019 81 5.9 superiorparietal 6100 4353 18015 3.274 0.740 0.115 0.026 66 6.7 superiortemporal 4735 3353 11119 2.898 0.542 0.108 0.020 54 4.0 supramarginal 482 302 1096 2.932 0.460 0.084 0.017 3 0.3 transversetemporal 2962 2019 6602 3.192 0.631 0.102 0.025 24 2.6 insula mris_anatomical_stats done @#@FSTIME 2025:10:22:11:57:24 mris_anatomical_stats N 14 e 6.14 S 0.26 U 5.81 P 99% M 441852 F 0 R 121589 W 0 c 14 w 4 I 0 O 24 L 24.21 24.20 24.13 @#@FSLOADPOST 2025:10:22:11:57:30 mris_anatomical_stats N 14 24.19 24.20 24.13 #-------------------------------------------- #@# ASeg Stats Wed Oct 22 11:57:30 CDT 2025 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --stiv /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/synthseg.tiv.dat --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /usr/local/freesurfer/8.0.0/ASegStatsLUT.txt --subject sub-01EN91PG_ses-00A setting seed for random number genererator to 1234 8.0.0 cwd cmdline mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --stiv /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/stats/synthseg.tiv.dat --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /usr/local/freesurfer/8.0.0/ASegStatsLUT.txt --subject sub-01EN91PG_ses-00A sysname Linux hostname bbs96787.local machine x86_64 user kate whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) Computing euler number orig.nofix lheno = -28, rheno = -22 orig.nofix lhholes = 15, rhholes = 12 Loading mri/aseg.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation Reporting on 45 segmentations Using PrintSegStat mri_segstats done @#@FSTIME 2025:10:22:11:57:30 mri_segstats N 34 e 207.96 S 0.60 U 207.33 P 99% M 324912 F 0 R 688959 W 0 c 312 w 1 I 0 O 24 L 24.19 24.20 24.13 @#@FSLOADPOST 2025:10:22:12:00:58 mri_segstats N 34 24.22 24.18 24.13 /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label #-------------------------------------------- #@# BA_exvivo Labels lh Wed Oct 22 12:00:58 CDT 2025 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA1_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 105 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.label 4234 mri_label2label: Done @#@FSTIME 2025:10:22:12:00:58 mri_label2label N 12 e 4.15 S 0.37 U 3.78 P 99% M 543368 F 0 R 161695 W 0 c 7 w 1 I 0 O 256 L 24.22 24.18 24.13 @#@FSLOADPOST 2025:10:22:12:01:02 mri_label2label N 12 24.36 24.21 24.14 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA2_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 214 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.label 8123 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:02 mri_label2label N 12 e 4.36 S 0.34 U 4.02 P 99% M 544536 F 0 R 161764 W 0 c 8 w 1 I 0 O 488 L 24.36 24.21 24.14 @#@FSLOADPOST 2025:10:22:12:01:06 mri_label2label N 12 24.49 24.24 24.15 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA3a_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA3a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 44 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.label 4121 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:06 mri_label2label N 12 e 4.05 S 0.34 U 3.71 P 100% M 543888 F 0 R 161697 W 0 c 7 w 1 I 0 O 224 L 24.49 24.24 24.15 @#@FSLOADPOST 2025:10:22:12:01:10 mri_label2label N 12 24.37 24.22 24.14 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA3b_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA3b_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 129 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.label 6112 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:10 mri_label2label N 12 e 4.16 S 0.33 U 3.83 P 99% M 543164 F 0 R 161727 W 0 c 9 w 1 I 0 O 360 L 24.37 24.22 24.14 @#@FSLOADPOST 2025:10:22:12:01:15 mri_label2label N 12 24.26 24.20 24.13 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA4a_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA4a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 130 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.label 5914 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:15 mri_label2label N 12 e 3.90 S 0.35 U 3.54 P 100% M 543424 F 0 R 161723 W 0 c 7 w 1 I 0 O 352 L 24.26 24.20 24.13 @#@FSLOADPOST 2025:10:22:12:01:19 mri_label2label N 12 24.16 24.18 24.13 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA4p_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA4p_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 78 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.label 4148 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:19 mri_label2label N 12 e 3.41 S 0.33 U 3.07 P 99% M 543888 F 0 R 161695 W 0 c 8 w 1 I 0 O 240 L 24.16 24.18 24.13 @#@FSLOADPOST 2025:10:22:12:01:22 mri_label2label N 12 24.16 24.18 24.13 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA6_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA6_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 630 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.label 14219 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:22 mri_label2label N 12 e 4.50 S 0.31 U 4.18 P 99% M 544212 F 0 R 161868 W 0 c 9 w 1 I 0 O 920 L 24.16 24.18 24.13 @#@FSLOADPOST 2025:10:22:12:01:27 mri_label2label N 12 23.99 24.14 24.12 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA44_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA44_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 108 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.label 4289 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:27 mri_label2label N 12 e 3.51 S 0.34 U 3.16 P 99% M 543028 F 0 R 161697 W 0 c 8 w 1 I 0 O 248 L 23.99 24.14 24.12 @#@FSLOADPOST 2025:10:22:12:01:30 mri_label2label N 12 23.83 24.11 24.10 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA45_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA45_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 298 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.label 3720 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:30 mri_label2label N 12 e 3.44 S 0.30 U 3.13 P 100% M 543736 F 0 R 157473 W 0 c 10 w 1 I 0 O 272 L 23.83 24.11 24.10 @#@FSLOADPOST 2025:10:22:12:01:34 mri_label2label N 12 23.68 24.07 24.09 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.V1_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.V1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 891 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.label 5532 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:34 mri_label2label N 12 e 3.91 S 0.36 U 3.55 P 100% M 542900 F 0 R 161714 W 0 c 9 w 1 I 0 O 424 L 23.68 24.07 24.09 @#@FSLOADPOST 2025:10:22:12:01:37 mri_label2label N 12 23.68 24.07 24.09 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.V2_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.V2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 1729 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.label 9843 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:38 mri_label2label N 12 e 4.62 S 0.34 U 4.28 P 99% M 544544 F 0 R 161781 W 0 c 7 w 1 I 0 O 760 L 23.68 24.07 24.09 @#@FSLOADPOST 2025:10:22:12:01:42 mri_label2label N 12 23.55 24.04 24.08 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.MT_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.MT_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 161 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.label 2179 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:42 mri_label2label N 12 e 3.60 S 0.33 U 3.27 P 100% M 543300 F 0 R 161660 W 0 c 8 w 1 I 0 O 152 L 23.55 24.04 24.08 @#@FSLOADPOST 2025:10:22:12:01:46 mri_label2label N 12 23.42 24.00 24.07 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.entorhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1290 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1290 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 149 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.label 1439 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:46 mri_label2label N 12 e 3.21 S 0.34 U 2.86 P 100% M 543608 F 0 R 161647 W 0 c 10 w 3 I 0 O 104 L 23.42 24.00 24.07 @#@FSLOADPOST 2025:10:22:12:01:49 mri_label2label N 12 23.39 23.99 24.06 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.perirhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 132 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.label 1331 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:49 mri_label2label N 12 e 3.64 S 0.32 U 3.31 P 99% M 543784 F 0 R 157439 W 0 c 7 w 1 I 0 O 96 L 23.39 23.99 24.06 @#@FSLOADPOST 2025:10:22:12:01:53 mri_label2label N 12 23.39 23.99 24.06 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.FG1.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.FG1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.FG1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 414 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 414 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 43 Checking for and removing duplicates Writing label file ./lh.FG1.mpm.vpnl.label 457 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:53 mri_label2label N 12 e 3.47 S 0.35 U 3.11 P 100% M 543708 F 0 R 161630 W 0 c 5 w 1 I 0 O 40 L 23.39 23.99 24.06 @#@FSLOADPOST 2025:10:22:12:01:56 mri_label2label N 12 23.36 23.97 24.06 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.FG2.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.FG2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.FG2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 703 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 703 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 101 Checking for and removing duplicates Writing label file ./lh.FG2.mpm.vpnl.label 804 mri_label2label: Done @#@FSTIME 2025:10:22:12:01:56 mri_label2label N 12 e 3.55 S 0.35 U 3.20 P 100% M 543768 F 0 R 161636 W 0 c 7 w 1 I 0 O 64 L 23.36 23.97 24.06 @#@FSLOADPOST 2025:10:22:12:02:00 mri_label2label N 12 23.25 23.94 24.05 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.FG3.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.FG3.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.FG3.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1873 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1873 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 54 Checking for and removing duplicates Writing label file ./lh.FG3.mpm.vpnl.label 1927 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:00 mri_label2label N 12 e 3.55 S 0.32 U 3.22 P 99% M 543808 F 0 R 161654 W 0 c 6 w 1 I 0 O 128 L 23.25 23.94 24.05 @#@FSLOADPOST 2025:10:22:12:02:03 mri_label2label N 12 23.25 23.94 24.05 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.FG4.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.FG4.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.FG4.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 2101 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2101 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 341 Checking for and removing duplicates Writing label file ./lh.FG4.mpm.vpnl.label 2442 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:03 mri_label2label N 12 e 3.71 S 0.34 U 3.36 P 99% M 543816 F 0 R 161666 W 0 c 11 w 1 I 0 O 192 L 23.25 23.94 24.05 @#@FSLOADPOST 2025:10:22:12:02:07 mri_label2label N 12 23.15 23.91 24.04 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.hOc1.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.hOc1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.hOc1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 3877 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3877 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 683 Checking for and removing duplicates Writing label file ./lh.hOc1.mpm.vpnl.label 4560 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:07 mri_label2label N 12 e 3.76 S 0.33 U 3.42 P 99% M 543880 F 0 R 161697 W 0 c 5 w 1 I 0 O 344 L 23.15 23.91 24.04 @#@FSLOADPOST 2025:10:22:12:02:11 mri_label2label N 12 23.06 23.87 24.02 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.hOc2.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.hOc2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.hOc2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 2919 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2919 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 830 Checking for and removing duplicates Writing label file ./lh.hOc2.mpm.vpnl.label 3749 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:11 mri_label2label N 12 e 3.77 S 0.34 U 3.43 P 100% M 544004 F 0 R 161680 W 0 c 6 w 1 I 0 O 304 L 23.06 23.87 24.02 @#@FSLOADPOST 2025:10:22:12:02:15 mri_label2label N 12 22.97 23.84 24.01 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.hOc3v.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.hOc3v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1286 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1286 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 230 Checking for and removing duplicates Writing label file ./lh.hOc3v.mpm.vpnl.label 1516 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:15 mri_label2label N 12 e 3.63 S 0.32 U 3.30 P 99% M 542972 F 0 R 161650 W 0 c 10 w 1 I 0 O 128 L 22.97 23.84 24.01 @#@FSLOADPOST 2025:10:22:12:02:18 mri_label2label N 12 22.97 23.84 24.01 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.hOc4v.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.hOc4v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1006 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1006 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 147 Checking for and removing duplicates Writing label file ./lh.hOc4v.mpm.vpnl.label 1153 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:18 mri_label2label N 12 e 3.49 S 0.34 U 3.14 P 99% M 543404 F 0 R 157440 W 0 c 9 w 1 I 0 O 96 L 22.97 23.84 24.01 @#@FSLOADPOST 2025:10:22:12:02:22 mri_label2label N 12 22.89 23.81 24.00 mris_label2annot --s sub-01EN91PG_ses-00A --ctab /usr/local/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label Reading ctab /usr/local/freesurfer/8.0.0/average/colortable_vpnl.txt Number of ctab entries 9 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label cmdline mris_label2annot --s sub-01EN91PG_ses-00A --ctab /usr/local/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label sysname Linux hostname bbs96787.local machine x86_64 user kate subject sub-01EN91PG_ses-00A hemi lh SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 ColorTable /usr/local/freesurfer/8.0.0/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.orig set_atable_from_ctable(): 9 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.FG1.mpm.vpnl.label 1 1376057 FG1.mpm.vpnl (57 255 20 255) 1 reading lh.FG2.mpm.vpnl.label 2 16711935 FG2.mpm.vpnl (255 0 255 255) 2 reading lh.FG3.mpm.vpnl.label 3 16711680 FG3.mpm.vpnl (0 0 255 255) 3 reading lh.FG4.mpm.vpnl.label 4 1705837 FG4.mpm.vpnl (109 7 26 255) 4 reading lh.hOc1.mpm.vpnl.label 5 25600 hOc1.mpm.vpnl (0 100 0 255) 5 reading lh.hOc2.mpm.vpnl.label 6 255 hOc2.mpm.vpnl (255 0 0 255) 6 reading lh.hOc3v.mpm.vpnl.label 7 16776960 hOc3v.mpm.vpnl (0 255 255 255) 7 reading lh.hOc4v.mpm.vpnl.label 8 65535 hOc4v.mpm.vpnl (255 255 0 255) ****** Vertices Mapped To Multiple Labels ****** Found 115658 unmapped vertices out of 130161 ********************************************** Mapping unhit to unknown Found 115658 unhit vertices Writing annot to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.mpm.vpnl.annot @#@FSTIME 2025:10:22:12:02:22 mris_label2annot N 26 e 0.58 S 0.09 U 0.49 P 99% M 157800 F 0 R 42422 W 0 c 3 w 1 I 0 O 2040 L 22.89 23.81 24.00 @#@FSLOADPOST 2025:10:22:12:02:22 mris_label2annot N 26 22.89 23.81 24.00 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 48 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.thresh.label 1062 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:22 mri_label2label N 12 e 3.48 S 0.37 U 3.11 P 99% M 543184 F 0 R 161644 W 0 c 10 w 1 I 0 O 72 L 22.89 23.81 24.00 @#@FSLOADPOST 2025:10:22:12:02:26 mri_label2label N 12 22.82 23.78 23.99 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 23 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.thresh.label 2115 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:26 mri_label2label N 12 e 3.77 S 0.34 U 3.43 P 99% M 543292 F 0 R 161659 W 0 c 10 w 1 I 0 O 128 L 22.82 23.78 23.99 @#@FSLOADPOST 2025:10:22:12:02:30 mri_label2label N 12 22.76 23.75 23.98 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA3a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 6 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.thresh.label 1510 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:30 mri_label2label N 12 e 3.47 S 0.33 U 3.14 P 99% M 543280 F 0 R 161652 W 0 c 11 w 1 I 0 O 80 L 22.76 23.75 23.98 @#@FSLOADPOST 2025:10:22:12:02:33 mri_label2label N 12 22.76 23.75 23.98 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA3b_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 33 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.thresh.label 2029 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:33 mri_label2label N 12 e 3.71 S 0.33 U 3.37 P 100% M 543812 F 0 R 161660 W 0 c 5 w 2 I 0 O 128 L 22.76 23.75 23.98 @#@FSLOADPOST 2025:10:22:12:02:37 mri_label2label N 12 22.70 23.72 23.97 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA4a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 50 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.thresh.label 2369 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:37 mri_label2label N 12 e 3.84 S 0.34 U 3.49 P 100% M 543824 F 0 R 161662 W 0 c 6 w 1 I 0 O 144 L 22.70 23.72 23.97 @#@FSLOADPOST 2025:10:22:12:02:41 mri_label2label N 12 22.64 23.69 23.96 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA4p_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 29 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.thresh.label 1578 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:41 mri_label2label N 12 e 3.64 S 0.36 U 3.28 P 100% M 543796 F 0 R 161648 W 0 c 5 w 1 I 0 O 96 L 22.64 23.69 23.96 @#@FSLOADPOST 2025:10:22:12:02:45 mri_label2label N 12 22.75 23.70 23.96 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA6_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 306 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.thresh.label 7341 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:45 mri_label2label N 12 e 4.24 S 0.35 U 3.89 P 99% M 543992 F 0 R 161747 W 0 c 12 w 1 I 0 O 472 L 22.75 23.70 23.96 @#@FSLOADPOST 2025:10:22:12:02:49 mri_label2label N 12 22.77 23.69 23.95 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA44_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 20 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.thresh.label 1932 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:49 mri_label2label N 12 e 3.70 S 0.30 U 3.39 P 99% M 543796 F 0 R 157448 W 0 c 6 w 1 I 0 O 112 L 22.77 23.69 23.95 @#@FSLOADPOST 2025:10:22:12:02:53 mri_label2label N 12 22.77 23.69 23.95 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.BA45_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 140 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.thresh.label 1291 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:53 mri_label2label N 12 e 3.49 S 0.30 U 3.18 P 99% M 543776 F 0 R 161648 W 0 c 11 w 1 I 0 O 104 L 22.77 23.69 23.95 @#@FSLOADPOST 2025:10:22:12:02:56 mri_label2label N 12 22.71 23.66 23.94 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.V1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 637 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.thresh.label 4042 mri_label2label: Done @#@FSTIME 2025:10:22:12:02:56 mri_label2label N 12 e 3.95 S 0.33 U 3.61 P 99% M 543864 F 0 R 161695 W 0 c 9 w 1 I 0 O 312 L 22.71 23.66 23.94 @#@FSLOADPOST 2025:10:22:12:03:00 mri_label2label N 12 22.65 23.63 23.93 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.V2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 801 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.thresh.label 4135 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:00 mri_label2label N 12 e 3.88 S 0.35 U 3.52 P 99% M 543956 F 0 R 161694 W 0 c 10 w 1 I 0 O 328 L 22.65 23.63 23.93 @#@FSLOADPOST 2025:10:22:12:03:04 mri_label2label N 12 22.60 23.60 23.92 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.MT_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 17 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.thresh.label 530 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:04 mri_label2label N 12 e 3.51 S 0.32 U 3.18 P 99% M 543760 F 0 R 157427 W 0 c 12 w 1 I 0 O 40 L 22.60 23.60 23.92 @#@FSLOADPOST 2025:10:22:12:03:07 mri_label2label N 12 22.60 23.60 23.92 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 470 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 470 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 37 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.thresh.label 507 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:07 mri_label2label N 12 e 3.47 S 0.34 U 3.12 P 99% M 543232 F 0 R 161630 W 0 c 8 w 1 I 0 O 40 L 22.60 23.60 23.92 @#@FSLOADPOST 2025:10:22:12:03:11 mri_label2label N 12 22.63 23.59 23.92 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./lh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 450 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 450 nlabel points Performing mapping from target back to the source label 130161 Number of reverse mapping hits = 68 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.thresh.label 518 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:11 mri_label2label N 12 e 3.55 S 0.33 U 3.22 P 100% M 543756 F 0 R 161631 W 0 c 7 w 1 I 0 O 40 L 22.63 23.59 23.92 @#@FSLOADPOST 2025:10:22:12:03:15 mri_label2label N 12 22.58 23.57 23.91 mris_label2annot --s sub-01EN91PG_ses-00A --hemi lh --ctab /usr/local/freesurfer/8.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /usr/local/freesurfer/8.0.0/average/colortable_BA.txt Number of ctab entries 15 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label cmdline mris_label2annot --s sub-01EN91PG_ses-00A --hemi lh --ctab /usr/local/freesurfer/8.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname bbs96787.local machine x86_64 user kate subject sub-01EN91PG_ses-00A hemi lh SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 ColorTable /usr/local/freesurfer/8.0.0/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.BA1_exvivo.label 1 1530880 BA1_exvivo (0 92 23 255) 1 reading lh.BA2_exvivo.label 2 16749699 BA2_exvivo (131 148 255 255) 2 reading lh.BA3a_exvivo.label 3 16711680 BA3a_exvivo (0 0 255 255) 3 reading lh.BA3b_exvivo.label 4 3368703 BA3b_exvivo (255 102 51 255) 4 reading lh.BA4a_exvivo.label 5 1376196 BA4a_exvivo (196 255 20 255) 5 reading lh.BA4p_exvivo.label 6 13382655 BA4p_exvivo (255 51 204 255) 6 reading lh.BA6_exvivo.label 7 10036737 BA6_exvivo (1 38 153 255) 7 reading lh.BA44_exvivo.label 8 2490521 BA44_exvivo (153 0 38 255) 8 reading lh.BA45_exvivo.label 9 39283 BA45_exvivo (115 153 0 255) 9 reading lh.V1_exvivo.label 10 3993 V1_exvivo (153 15 0 255) 10 reading lh.V2_exvivo.label 11 8508928 V2_exvivo (0 214 129 255) 11 reading lh.MT_exvivo.label 12 10027163 MT_exvivo (155 0 153 255) 12 reading lh.perirhinal_exvivo.label 13 16422433 perirhinal_exvivo (33 150 250 255) 13 reading lh.entorhinal_exvivo.label 14 16392598 entorhinal_exvivo (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 90533 unmapped vertices out of 130161 ********************************************** Mapping unhit to unknown Found 90533 unhit vertices Writing annot to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.BA_exvivo.annot @#@FSTIME 2025:10:22:12:03:15 mris_label2annot N 38 e 0.65 S 0.08 U 0.56 P 99% M 161388 F 0 R 43288 W 0 c 2 w 1 I 0 O 2040 L 22.58 23.57 23.91 @#@FSLOADPOST 2025:10:22:12:03:15 mris_label2annot N 38 22.58 23.57 23.91 mris_label2annot --s sub-01EN91PG_ses-00A --hemi lh --ctab /usr/local/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /usr/local/freesurfer/8.0.0/average/colortable_BA_thresh.txt Number of ctab entries 15 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label cmdline mris_label2annot --s sub-01EN91PG_ses-00A --hemi lh --ctab /usr/local/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname bbs96787.local machine x86_64 user kate subject sub-01EN91PG_ses-00A hemi lh SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 ColorTable /usr/local/freesurfer/8.0.0/average/colortable_BA_thresh.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading lh.BA1_exvivo.thresh.label 1 1530880 BA1_exvivo.thresh (0 92 23 255) 1 reading lh.BA2_exvivo.thresh.label 2 16749699 BA2_exvivo.thresh (131 148 255 255) 2 reading lh.BA3a_exvivo.thresh.label 3 16711680 BA3a_exvivo.thresh (0 0 255 255) 3 reading lh.BA3b_exvivo.thresh.label 4 3368703 BA3b_exvivo.thresh (255 102 51 255) 4 reading lh.BA4a_exvivo.thresh.label 5 1376196 BA4a_exvivo.thresh (196 255 20 255) 5 reading lh.BA4p_exvivo.thresh.label 6 13382655 BA4p_exvivo.thresh (255 51 204 255) 6 reading lh.BA6_exvivo.thresh.label 7 10036737 BA6_exvivo.thresh (1 38 153 255) 7 reading lh.BA44_exvivo.thresh.label 8 2490521 BA44_exvivo.thresh (153 0 38 255) 8 reading lh.BA45_exvivo.thresh.label 9 39283 BA45_exvivo.thresh (115 153 0 255) 9 reading lh.V1_exvivo.thresh.label 10 3993 V1_exvivo.thresh (153 15 0 255) 10 reading lh.V2_exvivo.thresh.label 11 8508928 V2_exvivo.thresh (0 214 129 255) 11 reading lh.MT_exvivo.thresh.label 12 10027163 MT_exvivo.thresh (155 0 153 255) 12 reading lh.perirhinal_exvivo.thresh.label 13 16422433 perirhinal_exvivo.thresh (33 150 250 255) 13 reading lh.entorhinal_exvivo.thresh.label 14 16392598 entorhinal_exvivo.thresh (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 106878 unmapped vertices out of 130161 ********************************************** Mapping unhit to unknown Found 106878 unhit vertices Writing annot to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/lh.BA_exvivo.thresh.annot @#@FSTIME 2025:10:22:12:03:15 mris_label2annot N 38 e 0.61 S 0.09 U 0.51 P 99% M 160864 F 0 R 43246 W 0 c 4 w 1 I 0 O 2040 L 22.58 23.57 23.91 @#@FSLOADPOST 2025:10:22:12:03:16 mris_label2annot N 38 22.58 23.57 23.91 mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-01EN91PG_ses-00A lh white computing statistics for each annotation in ./lh.BA_exvivo.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 284653 Total vertex volume 284504 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 1078 687 2465 2.545 0.531 0.134 0.031 17 1.3 BA1_exvivo 3812 2524 6384 2.484 0.494 0.100 0.018 27 2.8 BA2_exvivo 1009 670 1042 2.125 0.396 0.130 0.027 8 1.1 BA3a_exvivo 2382 1588 4187 2.184 0.767 0.094 0.017 22 1.5 BA3b_exvivo 1628 1000 3809 3.206 0.429 0.095 0.017 52 1.4 BA4a_exvivo 1245 828 2103 2.666 0.312 0.088 0.014 5 0.8 BA4p_exvivo 9708 6627 25857 3.190 0.556 0.112 0.021 88 8.4 BA6_exvivo 2021 1456 5326 3.108 0.503 0.109 0.021 29 1.7 BA44_exvivo 2759 1928 7247 2.906 0.590 0.101 0.017 30 1.8 BA45_exvivo 3333 2393 4432 1.820 0.469 0.132 0.033 43 3.8 V1_exvivo 7507 5111 13581 2.375 0.584 0.138 0.030 97 9.1 V2_exvivo 1665 1126 3723 2.745 0.519 0.113 0.025 18 1.5 MT_exvivo 807 579 2516 3.440 0.645 0.126 0.025 9 0.8 perirhinal_exvivo 674 430 1854 3.284 0.892 0.102 0.028 5 1.0 entorhinal_exvivo mris_anatomical_stats done @#@FSTIME 2025:10:22:12:03:16 mris_anatomical_stats N 12 e 3.28 S 0.28 U 2.99 P 99% M 439724 F 0 R 126933 W 0 c 14 w 1 I 0 O 24 L 22.58 23.57 23.91 @#@FSLOADPOST 2025:10:22:12:03:19 mris_anatomical_stats N 12 22.53 23.54 23.90 mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-01EN91PG_ses-00A lh white computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 284653 Total vertex volume 284504 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 728 410 1478 2.436 0.420 0.137 0.031 12 0.9 BA1_exvivo.thresh 1432 945 2343 2.309 0.435 0.078 0.012 7 0.7 BA2_exvivo.thresh 828 550 825 2.107 0.388 0.133 0.029 7 1.0 BA3a_exvivo.thresh 1407 933 1719 1.716 0.414 0.078 0.010 7 0.6 BA3b_exvivo.thresh 1567 982 3457 3.168 0.428 0.071 0.012 5 0.7 BA4a_exvivo.thresh 1029 688 1697 2.626 0.288 0.099 0.016 6 0.7 BA4p_exvivo.thresh 5477 3664 14156 3.170 0.513 0.114 0.022 50 5.0 BA6_exvivo.thresh 1224 912 3477 3.147 0.481 0.116 0.023 21 1.2 BA44_exvivo.thresh 1128 779 3279 2.977 0.584 0.103 0.019 13 0.9 BA45_exvivo.thresh 3542 2506 4759 1.825 0.478 0.132 0.033 46 4.1 V1_exvivo.thresh 3763 2636 6606 2.306 0.596 0.147 0.032 53 5.0 V2_exvivo.thresh 399 268 626 2.459 0.418 0.090 0.012 2 0.2 MT_exvivo.thresh 357 265 1277 3.553 0.699 0.142 0.029 5 0.4 perirhinal_exvivo.thresh 402 261 1162 3.606 0.652 0.082 0.014 1 0.3 entorhinal_exvivo.thresh mris_anatomical_stats done @#@FSTIME 2025:10:22:12:03:19 mris_anatomical_stats N 12 e 3.26 S 0.28 U 2.98 P 99% M 439376 F 0 R 126929 W 0 c 7 w 1 I 0 O 32 L 22.53 23.54 23.90 @#@FSLOADPOST 2025:10:22:12:03:22 mris_anatomical_stats N 12 22.53 23.54 23.90 #-------------------------------------------- #@# BA_exvivo Labels rh Wed Oct 22 12:03:22 CDT 2025 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA1_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 61 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.label 4023 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:22 mri_label2label N 12 e 3.87 S 0.34 U 3.53 P 100% M 542160 F 0 R 154925 W 0 c 8 w 1 I 0 O 248 L 22.53 23.54 23.90 @#@FSLOADPOST 2025:10:22:12:03:26 mri_label2label N 12 22.41 23.50 23.88 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA2_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 102 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.label 6789 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:26 mri_label2label N 12 e 4.28 S 0.33 U 3.94 P 99% M 542444 F 0 R 154973 W 0 c 6 w 1 I 0 O 400 L 22.41 23.50 23.88 @#@FSLOADPOST 2025:10:22:12:03:31 mri_label2label N 12 22.30 23.46 23.86 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA3a_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA3a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 21 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.label 4001 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:31 mri_label2label N 12 e 3.87 S 0.33 U 3.53 P 99% M 542468 F 0 R 154923 W 0 c 8 w 1 I 0 O 200 L 22.30 23.46 23.86 @#@FSLOADPOST 2025:10:22:12:03:35 mri_label2label N 12 22.35 23.45 23.86 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA3b_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA3b_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 56 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.label 4578 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:35 mri_label2label N 12 e 3.97 S 0.33 U 3.63 P 99% M 542580 F 0 R 154933 W 0 c 9 w 1 I 0 O 256 L 22.35 23.45 23.86 @#@FSLOADPOST 2025:10:22:12:03:39 mri_label2label N 12 22.24 23.41 23.84 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA4a_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA4a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 105 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.label 5852 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:39 mri_label2label N 12 e 3.98 S 0.34 U 3.63 P 100% M 541568 F 0 R 154957 W 0 c 11 w 1 I 0 O 320 L 22.24 23.41 23.84 @#@FSLOADPOST 2025:10:22:12:03:43 mri_label2label N 12 22.24 23.41 23.84 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA4p_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA4p_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 45 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.label 4518 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:43 mri_label2label N 12 e 4.05 S 0.31 U 3.73 P 100% M 542584 F 0 R 154935 W 0 c 5 w 1 I 0 O 224 L 22.24 23.41 23.84 @#@FSLOADPOST 2025:10:22:12:03:47 mri_label2label N 12 22.14 23.37 23.83 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA6_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA6_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 381 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.label 12637 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:47 mri_label2label N 12 e 4.64 S 0.33 U 4.31 P 100% M 541848 F 0 R 155069 W 0 c 10 w 1 I 0 O 752 L 22.14 23.37 23.83 @#@FSLOADPOST 2025:10:22:12:03:51 mri_label2label N 12 22.05 23.33 23.81 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA44_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA44_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 432 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.label 7344 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:51 mri_label2label N 12 e 4.00 S 0.33 U 3.67 P 99% M 542648 F 0 R 154980 W 0 c 8 w 1 I 0 O 480 L 22.05 23.33 23.81 @#@FSLOADPOST 2025:10:22:12:03:55 mri_label2label N 12 21.97 23.29 23.80 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA45_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA45_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 368 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.label 5723 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:55 mri_label2label N 12 e 3.82 S 0.34 U 3.48 P 99% M 541972 F 0 R 154949 W 0 c 6 w 1 I 0 O 392 L 21.97 23.29 23.80 @#@FSLOADPOST 2025:10:22:12:03:59 mri_label2label N 12 21.89 23.25 23.78 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.V1_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.V1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 827 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.label 5554 mri_label2label: Done @#@FSTIME 2025:10:22:12:03:59 mri_label2label N 12 e 3.84 S 0.30 U 3.54 P 100% M 542080 F 0 R 154943 W 0 c 8 w 1 I 0 O 408 L 21.89 23.25 23.78 @#@FSLOADPOST 2025:10:22:12:04:03 mri_label2label N 12 21.89 23.25 23.78 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.V2_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.V2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 1767 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.label 9783 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:03 mri_label2label N 12 e 4.16 S 0.35 U 3.80 P 99% M 542708 F 0 R 155009 W 0 c 8 w 1 I 0 O 736 L 21.89 23.25 23.78 @#@FSLOADPOST 2025:10:22:12:04:07 mri_label2label N 12 21.82 23.21 23.77 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.MT_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.MT_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 483 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.label 2415 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:07 mri_label2label N 12 e 3.49 S 0.32 U 3.16 P 99% M 542016 F 0 R 158210 W 0 c 11 w 1 I 0 O 192 L 21.82 23.21 23.77 @#@FSLOADPOST 2025:10:22:12:04:11 mri_label2label N 12 21.75 23.18 23.75 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.entorhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1038 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1038 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 53 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.label 1091 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:11 mri_label2label N 12 e 3.60 S 0.33 U 3.27 P 99% M 541432 F 0 R 150658 W 0 c 8 w 1 I 0 O 72 L 21.75 23.18 23.75 @#@FSLOADPOST 2025:10:22:12:04:14 mri_label2label N 12 21.69 23.14 23.74 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.perirhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 31 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.label 783 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:14 mri_label2label N 12 e 3.50 S 0.35 U 3.14 P 99% M 541460 F 0 R 158183 W 0 c 7 w 1 I 0 O 56 L 21.69 23.14 23.74 @#@FSLOADPOST 2025:10:22:12:04:18 mri_label2label N 12 21.69 23.14 23.74 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.FG1.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.FG1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.FG1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 541 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 541 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 164 Checking for and removing duplicates Writing label file ./rh.FG1.mpm.vpnl.label 705 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:18 mri_label2label N 12 e 3.45 S 0.34 U 3.10 P 99% M 541968 F 0 R 158180 W 0 c 5 w 1 I 0 O 64 L 21.69 23.14 23.74 @#@FSLOADPOST 2025:10:22:12:04:21 mri_label2label N 12 21.64 23.10 23.72 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.FG2.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.FG2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.FG2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 721 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 721 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 239 Checking for and removing duplicates Writing label file ./rh.FG2.mpm.vpnl.label 960 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:21 mri_label2label N 12 e 3.53 S 0.32 U 3.20 P 99% M 541912 F 0 R 154867 W 0 c 5 w 1 I 0 O 80 L 21.64 23.10 23.72 @#@FSLOADPOST 2025:10:22:12:04:25 mri_label2label N 12 21.59 23.07 23.71 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.FG3.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.FG3.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.FG3.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1523 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1523 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 198 Checking for and removing duplicates Writing label file ./rh.FG3.mpm.vpnl.label 1721 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:25 mri_label2label N 12 e 3.49 S 0.34 U 3.15 P 99% M 541356 F 0 R 153989 W 0 c 7 w 1 I 0 O 136 L 21.59 23.07 23.71 @#@FSLOADPOST 2025:10:22:12:04:28 mri_label2label N 12 21.59 23.07 23.71 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.FG4.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.FG4.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.FG4.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1586 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1586 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 296 Checking for and removing duplicates Writing label file ./rh.FG4.mpm.vpnl.label 1882 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:28 mri_label2label N 12 e 3.38 S 0.33 U 3.05 P 99% M 541996 F 0 R 153991 W 0 c 5 w 1 I 0 O 152 L 21.59 23.07 23.71 @#@FSLOADPOST 2025:10:22:12:04:32 mri_label2label N 12 21.78 23.08 23.71 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.hOc1.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.hOc1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.hOc1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 3667 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3667 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 564 Checking for and removing duplicates Writing label file ./rh.hOc1.mpm.vpnl.label 4231 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:32 mri_label2label N 12 e 4.00 S 0.33 U 3.67 P 99% M 542076 F 0 R 158242 W 0 c 6 w 1 I 0 O 312 L 21.78 23.08 23.71 @#@FSLOADPOST 2025:10:22:12:04:36 mri_label2label N 12 21.80 23.07 23.70 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.hOc2.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.hOc2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.hOc2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 2719 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2719 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 654 Checking for and removing duplicates Writing label file ./rh.hOc2.mpm.vpnl.label 3373 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:36 mri_label2label N 12 e 3.57 S 0.32 U 3.24 P 100% M 541700 F 0 R 150701 W 0 c 8 w 1 I 0 O 256 L 21.80 23.07 23.70 @#@FSLOADPOST 2025:10:22:12:04:40 mri_label2label N 12 21.73 23.03 23.68 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.hOc3v.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.hOc3v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1228 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1228 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 355 Checking for and removing duplicates Writing label file ./rh.hOc3v.mpm.vpnl.label 1583 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:40 mri_label2label N 12 e 3.32 S 0.33 U 2.99 P 99% M 541432 F 0 R 150667 W 0 c 8 w 1 I 0 O 136 L 21.73 23.03 23.68 @#@FSLOADPOST 2025:10:22:12:04:43 mri_label2label N 12 21.73 23.03 23.68 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.hOc4v.mpm.vpnl.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.hOc4v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1025 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1025 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 316 Checking for and removing duplicates Writing label file ./rh.hOc4v.mpm.vpnl.label 1341 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:43 mri_label2label N 12 e 3.27 S 0.31 U 2.96 P 100% M 541980 F 0 R 158196 W 0 c 7 w 1 I 0 O 112 L 21.73 23.03 23.68 @#@FSLOADPOST 2025:10:22:12:04:46 mri_label2label N 12 21.67 23.00 23.67 mris_label2annot --s sub-01EN91PG_ses-00A --ctab /usr/local/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label Reading ctab /usr/local/freesurfer/8.0.0/average/colortable_vpnl.txt Number of ctab entries 9 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label cmdline mris_label2annot --s sub-01EN91PG_ses-00A --ctab /usr/local/freesurfer/8.0.0/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label sysname Linux hostname bbs96787.local machine x86_64 user kate subject sub-01EN91PG_ses-00A hemi rh SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 ColorTable /usr/local/freesurfer/8.0.0/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.orig set_atable_from_ctable(): 9 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.FG1.mpm.vpnl.label 1 1376057 FG1.mpm.vpnl (57 255 20 255) 1 reading rh.FG2.mpm.vpnl.label 2 16711935 FG2.mpm.vpnl (255 0 255 255) 2 reading rh.FG3.mpm.vpnl.label 3 16711680 FG3.mpm.vpnl (0 0 255 255) 3 reading rh.FG4.mpm.vpnl.label 4 1705837 FG4.mpm.vpnl (109 7 26 255) 4 reading rh.hOc1.mpm.vpnl.label 5 25600 hOc1.mpm.vpnl (0 100 0 255) 5 reading rh.hOc2.mpm.vpnl.label 6 255 hOc2.mpm.vpnl (255 0 0 255) 6 reading rh.hOc3v.mpm.vpnl.label 7 16776960 hOc3v.mpm.vpnl (0 255 255 255) 7 reading rh.hOc4v.mpm.vpnl.label 8 65535 hOc4v.mpm.vpnl (255 255 0 255) ****** Vertices Mapped To Multiple Labels ****** Found 115069 unmapped vertices out of 129379 ********************************************** Mapping unhit to unknown Found 115069 unhit vertices Writing annot to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.mpm.vpnl.annot @#@FSTIME 2025:10:22:12:04:46 mris_label2annot N 26 e 0.55 S 0.07 U 0.47 P 100% M 156664 F 0 R 42761 W 0 c 2 w 1 I 0 O 2024 L 21.67 23.00 23.67 @#@FSLOADPOST 2025:10:22:12:04:47 mris_label2annot N 26 21.67 23.00 23.67 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 25 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.thresh.label 901 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:47 mri_label2label N 12 e 3.34 S 0.32 U 3.01 P 99% M 541924 F 0 R 150664 W 0 c 11 w 1 I 0 O 64 L 21.67 23.00 23.67 @#@FSLOADPOST 2025:10:22:12:04:50 mri_label2label N 12 21.62 22.96 23.66 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 19 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.thresh.label 2707 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:50 mri_label2label N 12 e 3.55 S 0.31 U 3.23 P 99% M 542044 F 0 R 158216 W 0 c 6 w 1 I 0 O 160 L 21.62 22.96 23.66 @#@FSLOADPOST 2025:10:22:12:04:54 mri_label2label N 12 21.57 22.93 23.64 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA3a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 12 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.thresh.label 1710 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:54 mri_label2label N 12 e 3.34 S 0.30 U 3.04 P 99% M 542004 F 0 R 153994 W 0 c 6 w 1 I 0 O 88 L 21.57 22.93 23.64 @#@FSLOADPOST 2025:10:22:12:04:57 mri_label2label N 12 21.57 22.93 23.64 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA3b_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 27 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.thresh.label 2210 mri_label2label: Done @#@FSTIME 2025:10:22:12:04:57 mri_label2label N 12 e 3.38 S 0.33 U 3.04 P 100% M 541472 F 0 R 154892 W 0 c 6 w 1 I 0 O 128 L 21.57 22.93 23.64 @#@FSLOADPOST 2025:10:22:12:05:00 mri_label2label N 12 21.60 22.92 23.63 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA4a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 19 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.thresh.label 1407 mri_label2label: Done @#@FSTIME 2025:10:22:12:05:00 mri_label2label N 12 e 3.32 S 0.32 U 2.99 P 99% M 541068 F 0 R 154879 W 0 c 7 w 1 I 0 O 80 L 21.60 22.92 23.63 @#@FSLOADPOST 2025:10:22:12:05:04 mri_label2label N 12 21.56 22.88 23.62 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA4p_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 17 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.thresh.label 1506 mri_label2label: Done @#@FSTIME 2025:10:22:12:05:04 mri_label2label N 12 e 3.59 S 0.34 U 3.25 P 100% M 541088 F 0 R 158199 W 0 c 6 w 1 I 0 O 80 L 21.56 22.88 23.62 @#@FSLOADPOST 2025:10:22:12:05:07 mri_label2label N 12 21.56 22.88 23.62 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA6_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 156 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.thresh.label 7115 mri_label2label: Done @#@FSTIME 2025:10:22:12:05:07 mri_label2label N 12 e 4.30 S 0.34 U 3.96 P 99% M 541868 F 0 R 158294 W 0 c 8 w 1 I 0 O 416 L 21.56 22.88 23.62 @#@FSLOADPOST 2025:10:22:12:05:12 mri_label2label N 12 21.51 22.85 23.60 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA44_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 102 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.thresh.label 1114 mri_label2label: Done @#@FSTIME 2025:10:22:12:05:12 mri_label2label N 12 e 3.37 S 0.32 U 3.04 P 99% M 541728 F 0 R 158195 W 0 c 12 w 1 I 0 O 80 L 21.51 22.85 23.60 @#@FSLOADPOST 2025:10:22:12:05:15 mri_label2label N 12 21.47 22.82 23.59 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.BA45_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 76 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.thresh.label 1254 mri_label2label: Done @#@FSTIME 2025:10:22:12:05:15 mri_label2label N 12 e 3.29 S 0.32 U 2.96 P 99% M 541992 F 0 R 158198 W 0 c 12 w 1 I 0 O 88 L 21.47 22.82 23.59 @#@FSLOADPOST 2025:10:22:12:05:18 mri_label2label N 12 21.47 22.82 23.59 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.V1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 455 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.thresh.label 3687 mri_label2label: Done @#@FSTIME 2025:10:22:12:05:18 mri_label2label N 12 e 3.81 S 0.34 U 3.47 P 99% M 542020 F 0 R 150711 W 0 c 8 w 1 I 0 O 272 L 21.47 22.82 23.59 @#@FSLOADPOST 2025:10:22:12:05:22 mri_label2label N 12 21.43 22.79 23.58 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.V2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 831 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.thresh.label 4268 mri_label2label: Done @#@FSTIME 2025:10:22:12:05:22 mri_label2label N 12 e 3.80 S 0.35 U 3.45 P 99% M 542180 F 0 R 158239 W 0 c 13 w 2 I 0 O 328 L 21.43 22.79 23.58 @#@FSLOADPOST 2025:10:22:12:05:26 mri_label2label N 12 21.40 22.76 23.56 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.MT_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 120 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.thresh.label 388 mri_label2label: Done @#@FSTIME 2025:10:22:12:05:26 mri_label2label N 12 e 3.09 S 0.31 U 2.78 P 100% M 541404 F 0 R 154861 W 0 c 7 w 1 I 0 O 40 L 21.40 22.76 23.56 @#@FSLOADPOST 2025:10:22:12:05:29 mri_label2label N 12 21.36 22.73 23.55 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 694 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 694 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 37 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.thresh.label 731 mri_label2label: Done @#@FSTIME 2025:10:22:12:05:29 mri_label2label N 12 e 3.31 S 0.33 U 2.98 P 99% M 541932 F 0 R 154866 W 0 c 7 w 1 I 0 O 48 L 21.36 22.73 23.55 @#@FSLOADPOST 2025:10:22:12:05:33 mri_label2label N 12 21.36 22.73 23.55 mri_label2label --srcsubject fsaverage --srclabel /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject sub-01EN91PG_ses-00A --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01EN91PG_ses-00A trglabel = ./rh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 FREESURFER_HOME /usr/local/freesurfer/8.0.0 Loading source label. Found 291 points in source label. Starting surface-based mapping Reading source registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white Reading target registration /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 291 nlabel points Performing mapping from target back to the source label 129379 Number of reverse mapping hits = 14 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.thresh.label 305 mri_label2label: Done @#@FSTIME 2025:10:22:12:05:33 mri_label2label N 12 e 3.06 S 0.32 U 2.74 P 99% M 541352 F 0 R 154856 W 0 c 5 w 1 I 0 O 24 L 21.36 22.73 23.55 @#@FSLOADPOST 2025:10:22:12:05:36 mri_label2label N 12 21.34 22.70 23.53 mris_label2annot --s sub-01EN91PG_ses-00A --hemi rh --ctab /usr/local/freesurfer/8.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /usr/local/freesurfer/8.0.0/average/colortable_BA.txt Number of ctab entries 15 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label cmdline mris_label2annot --s sub-01EN91PG_ses-00A --hemi rh --ctab /usr/local/freesurfer/8.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname bbs96787.local machine x86_64 user kate subject sub-01EN91PG_ses-00A hemi rh SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 ColorTable /usr/local/freesurfer/8.0.0/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.BA1_exvivo.label 1 1530880 BA1_exvivo (0 92 23 255) 1 reading rh.BA2_exvivo.label 2 16749699 BA2_exvivo (131 148 255 255) 2 reading rh.BA3a_exvivo.label 3 16711680 BA3a_exvivo (0 0 255 255) 3 reading rh.BA3b_exvivo.label 4 3368703 BA3b_exvivo (255 102 51 255) 4 reading rh.BA4a_exvivo.label 5 1376196 BA4a_exvivo (196 255 20 255) 5 reading rh.BA4p_exvivo.label 6 13382655 BA4p_exvivo (255 51 204 255) 6 reading rh.BA6_exvivo.label 7 10036737 BA6_exvivo (1 38 153 255) 7 reading rh.BA44_exvivo.label 8 2490521 BA44_exvivo (153 0 38 255) 8 reading rh.BA45_exvivo.label 9 39283 BA45_exvivo (115 153 0 255) 9 reading rh.V1_exvivo.label 10 3993 V1_exvivo (153 15 0 255) 10 reading rh.V2_exvivo.label 11 8508928 V2_exvivo (0 214 129 255) 11 reading rh.MT_exvivo.label 12 10027163 MT_exvivo (155 0 153 255) 12 reading rh.perirhinal_exvivo.label 13 16422433 perirhinal_exvivo (33 150 250 255) 13 reading rh.entorhinal_exvivo.label 14 16392598 entorhinal_exvivo (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 90705 unmapped vertices out of 129379 ********************************************** Mapping unhit to unknown Found 90705 unhit vertices Writing annot to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.BA_exvivo.annot @#@FSTIME 2025:10:22:12:05:36 mris_label2annot N 38 e 0.64 S 0.08 U 0.56 P 99% M 160400 F 0 R 43636 W 0 c 3 w 1 I 0 O 2024 L 21.34 22.70 23.53 @#@FSLOADPOST 2025:10:22:12:05:36 mris_label2annot N 38 21.34 22.70 23.53 mris_label2annot --s sub-01EN91PG_ses-00A --hemi rh --ctab /usr/local/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /usr/local/freesurfer/8.0.0/average/colortable_BA_thresh.txt Number of ctab entries 15 8.0.0 cwd /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label cmdline mris_label2annot --s sub-01EN91PG_ses-00A --hemi rh --ctab /usr/local/freesurfer/8.0.0/average/colortable_BA_thresh.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname bbs96787.local machine x86_64 user kate subject sub-01EN91PG_ses-00A hemi rh SUBJECTS_DIR /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0 ColorTable /usr/local/freesurfer/8.0.0/average/colortable_BA_thresh.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.orig set_atable_from_ctable(): 15 entries convert labels to annotation with label2annotationV2() ... 0 reading rh.BA1_exvivo.thresh.label 1 1530880 BA1_exvivo.thresh (0 92 23 255) 1 reading rh.BA2_exvivo.thresh.label 2 16749699 BA2_exvivo.thresh (131 148 255 255) 2 reading rh.BA3a_exvivo.thresh.label 3 16711680 BA3a_exvivo.thresh (0 0 255 255) 3 reading rh.BA3b_exvivo.thresh.label 4 3368703 BA3b_exvivo.thresh (255 102 51 255) 4 reading rh.BA4a_exvivo.thresh.label 5 1376196 BA4a_exvivo.thresh (196 255 20 255) 5 reading rh.BA4p_exvivo.thresh.label 6 13382655 BA4p_exvivo.thresh (255 51 204 255) 6 reading rh.BA6_exvivo.thresh.label 7 10036737 BA6_exvivo.thresh (1 38 153 255) 7 reading rh.BA44_exvivo.thresh.label 8 2490521 BA44_exvivo.thresh (153 0 38 255) 8 reading rh.BA45_exvivo.thresh.label 9 39283 BA45_exvivo.thresh (115 153 0 255) 9 reading rh.V1_exvivo.thresh.label 10 3993 V1_exvivo.thresh (153 15 0 255) 10 reading rh.V2_exvivo.thresh.label 11 8508928 V2_exvivo.thresh (0 214 129 255) 11 reading rh.MT_exvivo.thresh.label 12 10027163 MT_exvivo.thresh (155 0 153 255) 12 reading rh.perirhinal_exvivo.thresh.label 13 16422433 perirhinal_exvivo.thresh (33 150 250 255) 13 reading rh.entorhinal_exvivo.thresh.label 14 16392598 entorhinal_exvivo.thresh (150 33 250 255) ****** Vertices Mapped To Multiple Labels ****** Found 107887 unmapped vertices out of 129379 ********************************************** Mapping unhit to unknown Found 107887 unhit vertices Writing annot to /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/label/rh.BA_exvivo.thresh.annot @#@FSTIME 2025:10:22:12:05:36 mris_label2annot N 38 e 0.60 S 0.09 U 0.51 P 99% M 159756 F 0 R 43580 W 0 c 2 w 1 I 0 O 2024 L 21.34 22.70 23.53 @#@FSLOADPOST 2025:10:22:12:05:37 mris_label2annot N 38 21.34 22.70 23.53 mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-01EN91PG_ses-00A rh white computing statistics for each annotation in ./rh.BA_exvivo.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 283936 Total vertex volume 283778 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 950 560 2181 2.616 0.603 0.134 0.029 17 0.9 BA1_exvivo 3262 2155 5092 2.374 0.421 0.088 0.013 21 1.8 BA2_exvivo 1006 666 1052 2.161 0.484 0.120 0.025 7 0.9 BA3a_exvivo 1887 1248 2914 2.020 0.564 0.083 0.013 14 1.2 BA3b_exvivo 1380 864 3107 3.046 0.403 0.091 0.016 8 0.9 BA4a_exvivo 1127 734 1964 2.715 0.333 0.085 0.018 5 0.8 BA4p_exvivo 7898 5360 20648 3.196 0.517 0.107 0.019 69 6.3 BA6_exvivo 3652 2595 9002 2.955 0.463 0.101 0.020 41 2.8 BA44_exvivo 3672 2607 9102 2.888 0.590 0.113 0.022 41 3.2 BA45_exvivo 3316 2462 4614 1.950 0.526 0.134 0.029 40 4.0 V1_exvivo 7409 5106 13220 2.402 0.611 0.141 0.032 97 9.9 V2_exvivo 2226 1499 4462 2.774 0.439 0.107 0.021 21 2.0 MT_exvivo 325 257 1275 3.946 0.775 0.115 0.028 3 0.3 perirhinal_exvivo 564 354 1852 3.787 0.734 0.097 0.024 3 0.5 entorhinal_exvivo mris_anatomical_stats done @#@FSTIME 2025:10:22:12:05:37 mris_anatomical_stats N 12 e 3.22 S 0.27 U 2.86 P 97% M 437308 F 0 R 123236 W 0 c 10 w 6 I 0 O 24 L 21.34 22.70 23.53 @#@FSLOADPOST 2025:10:22:12:05:40 mris_anatomical_stats N 12 21.31 22.67 23.52 mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-01EN91PG_ses-00A rh white computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot. reading input surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white... reading input pial surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.pial... reading input white surface /mnt/md0/ScratchPad_/ABCD/ABCD_6.0/mri_data/derivative/freesurfer/freesurfer8.0.0/sub-01EN91PG_ses-00A/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 283936 Total vertex volume 283778 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) 657 394 1290 2.325 0.526 0.137 0.029 12 0.8 BA1_exvivo.thresh 1843 1179 2867 2.341 0.434 0.070 0.009 7 0.7 BA2_exvivo.thresh 899 593 897 2.148 0.488 0.125 0.026 6 0.9 BA3a_exvivo.thresh 1477 971 1937 1.868 0.447 0.067 0.009 5 0.6 BA3b_exvivo.thresh 845 530 2009 3.120 0.422 0.108 0.020 6 0.8 BA4a_exvivo.thresh 934 616 1552 2.687 0.350 0.082 0.015 4 0.6 BA4p_exvivo.thresh 4906 3337 12416 3.161 0.506 0.110 0.020 44 4.1 BA6_exvivo.thresh 931 669 2510 3.077 0.374 0.092 0.021 9 0.7 BA44_exvivo.thresh 1000 752 3214 3.003 0.541 0.122 0.025 15 0.9 BA45_exvivo.thresh 3155 2322 4309 1.957 0.543 0.132 0.027 37 3.6 V1_exvivo.thresh 3882 2746 6553 2.241 0.616 0.152 0.038 58 6.1 V2_exvivo.thresh 383 228 848 2.846 0.331 0.090 0.015 4 0.3 MT_exvivo.thresh 33 29 160 4.362 0.514 0.109 0.028 0 0.0 perirhinal_exvivo.thresh 547 356 1794 4.056 0.664 0.087 0.017 2 0.4 entorhinal_exvivo.thresh mris_anatomical_stats done @#@FSTIME 2025:10:22:12:05:40 mris_anatomical_stats N 12 e 3.11 S 0.25 U 2.80 P 98% M 437404 F 0 R 120518 W 0 c 12 w 4 I 0 O 24 L 21.31 22.67 23.52 @#@FSLOADPOST 2025:10:22:12:05:43 mris_anatomical_stats N 12 21.31 22.67 23.52 Started at Wed Oct 22 09:54:12 CDT 2025 Ended at Wed Oct 22 12:05:43 CDT 2025 #@#%# recon-all-run-time-hours 2.192 recon-all -s sub-01EN91PG_ses-00A finished without error at Wed Oct 22 12:05:43 CDT 2025 #New# invocation of recon-all Tue Apr 21 13:09:45 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/recon-all -s sub-01EN91PG_ses-00A -localGI subjid sub-01EN91PG_ses-00A setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 Actual FREESURFER_HOME /opt/ohpc/pub/apps/freesurfer/8.0.0 build-stamp.txt: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a Linux c-02-18 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 8192 kbytes maxproc 1545830 maxlocks unlimited maxsignal 1545830 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 377Gi 36Gi 270Gi 18Gi 92Gi 340Gi Swap: 0B 0B 0B SLURM_JOB_ID 174833 ######################################## program versions used 8.0.0 (freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a) 8.0.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 8.0.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mris_convert -all-info ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:45-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 mri_motion_correct.fsl 8.0.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.0.0 TimeStamp: 2026/04/21-18:09:46-GMT BuildTime: Feb 3 2025 19:16:03 BuildStamp: freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a User: dal247378 Machine: c-02-18 Platform: Linux PlatformVersion: 5.14.0-503.40.1.el9_5.x86_64 CompilerName: GCC CompilerVersion: 8.5.0 ####################################### GCADIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/ohpc/pub/apps/freesurfer/8.0.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### Tue Apr 21 13:09:46 CDT 2026 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg --i /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/synthstrip.mgz --t /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --affine-only --o /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305 --threads 1 -rwxr-x--- 1 root kdamme 30890 May 28 2025 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/fs-synthmorph-reg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-02-18 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1811178 /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305 /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A To check affine registration tkregisterfv --mov /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/synthstrip.mgz --targ /opt/ohpc/pub/apps/freesurfer/8.0.0/average/mni305.cor.stripped.mgz --reg /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.mni305/aff.lta AffineOnly specified, so exiting now Started at Tue Apr 21 13:09:46 CDT 2026 Ended at Tue Apr 21 13:09:46 CDT 2026 Fs-Synthmorph-Reg-Run-Time-Sec 0 Fs-Synthmorph-Reg-Run-Time-Min 0.00 Fs-Synthmorph-Reg-Run-Time-Hours 0.00 fs-synthmorph-reg Done 8.0.0 --ltavox2vox: output LTA as VOX_TO_VOX transform. --inlta: synthmorph.mni305/aff.lta input LTA transform. --outlta: talairach.xfm.lta output LTA. LTA read, type : 1 1.08164 0.00849 -0.07859 -5.55669; -0.01370 1.06985 0.11468 -25.77936; 0.09467 -0.08870 1.15571 2.69360; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file talairach.xfm.lta... lta_convert successful. 8.0.0 --inlta: talairach.xfm.lta input LTA transform. --outmni: talairach.xfm output MNI/XFM matrix. LTA read, type : 1 1.08164 0.00849 -0.07859 -5.55669; -0.01370 1.06985 0.11468 -25.77937; 0.09467 -0.08870 1.15571 2.69360; 0.00000 0.00000 0.00000 1.00000; lta_convert successful. fs-synthmorph-reg --s sub-01EN91PG_ses-00A --threads 1 --i /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/orig.mgz --test fs-synthmorph-reg: update not needed #-------------------------------------- #@# MCADura Segmentation Tue Apr 21 13:09:46 CDT 2026 MCADura Segmentation does not need to be updated #-------------------------------------- #@# VSinus Segmentation Tue Apr 21 13:09:46 CDT 2026 mri_vsinus_seg --s sub-01EN91PG_ses-00A --rca-synthseg --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm Tue Apr 21 13:09:46 CDT 2026 setenv SUBJECTS_DIR /scratch/juno/dal247378/batches/batch_001 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_vsinus_seg --s sub-01EN91PG_ses-00A --rca-synthseg --threads 1 --synthmorphdir /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm -rwxr-x--- 1 root kdamme 20960 May 28 2025 /opt/ohpc/pub/apps/freesurfer/8.0.0/bin/mri_vsinus_seg freesurfer-linux-rocky8_x86_64-8.0.0-20250203-0f2bd3a $Id$ Linux c-02-18 5.14.0-503.40.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Apr 30 17:38:54 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux pid 1811824 mri_vol2vol --mov /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz --lta /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta --targ /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/nu.mgz --o /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz Matrix from LTA: -1.12486 -0.00027 0.07499 -0.72585; 0.09963 -0.10662 1.22919 -52.41547; 0.00799 -1.11089 -0.07707 -6.50670; 0.00000 0.00000 0.00000 1.00000; /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/nu.mgz movvol /opt/ohpc/pub/apps/freesurfer/8.0.0/average/vsinus.no-sp.prior.mni152.1.0mm.mgz targvol /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz regfile /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/transforms/synthmorph.1.0mm.1.0mm/reg.targ_to_invol.lta invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1776855373 Final tkRAS-to-tkRAS Matrix is: -1.12486 -0.00027 0.07499 -0.72586; 0.09963 -0.10662 1.22919 -52.41548; 0.00799 -1.11089 -0.07707 -6.50671; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.12486 0.07499 0.00027 231.57443; 0.00799 -0.07707 1.11089 -12.34545; -0.09963 -1.22919 -0.10662 227.82114; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask -T .001 -crop 0 /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mgz /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz threshold mask volume at 0.001 cropping npad = 0 DoAbs = 0 Found 77636 voxels in mask (pct= 0.46) Computing bounding box, npad = 0, 0, 0, 0, 0, 0 68 23 36 122 117 90 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz...done. mri_binarize --crop-around-ras /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/nu.mgz nolta cras /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz 0 144 144 144 Getting cras from /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/native.avg12567.prior.mincrop.mgz final ras2vox matrix -1.00000 -0.00000 -0.00000 132.74709; -0.00000 -0.00000 -1.00000 99.37968; -0.00000 1.00000 -0.00000 112.68102; -0.00000 -0.00000 -0.00000 1.00000; -------------------------- ostr LIA (144 144 144) (144 144 144) rasCenter 3.74709 -31.681 17.8797 crsCenter 129 81.5 81 MRIcropAroundCRS() vol size 256 256 256 center 129 81.5 81 fov 144 144 144 limits 58 201 11 154 10 153 using MRIextractRegion() mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 --ctab /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab --keep_ac --conform --percentile 99.9 --vmp --output-base vsinus --logfile mri_vsinus_seg.log --fov 144 --threads 1 --no-cite-sclimbic --i /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz --o /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz /opt/ohpc/pub/apps/freesurfer/8.0.0/python/scripts/mri_sclimbic_seg --model /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 --ctab /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab --keep_ac --conform --percentile 99.9 --vmp --output-base vsinus --logfile mri_vsinus_seg.log --fov 144 --threads 1 --no-cite-sclimbic --i /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz --o /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz Keeping anterior commissure in vols and stats Using CPU Using 1 thread(s) Loaded lookup table /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.no-sp.ctab Loaded population stats /opt/ohpc/pub/apps/freesurfer/8.0.0/models/sclimbic.volstats.csv nb_labels 6 inshape (144, 144, 144) features 24 (None, 144, 144, 144, 1) Loading weights from /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 ----------------------- Done loading weights ----------------------- Loaded model weights /opt/ohpc/pub/apps/freesurfer/8.0.0/models/vsinus.no-sp.m.all.nstd10-070.h5 Segmenting image 1/1 Loaded input image from /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/invol.crop-to-prior.norev.mgz 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 9s 9s/step Wrote segmentation to /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz vmpcma: 11233020 done mri_binarize --i /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/synthseg.rca.mgz --match 3 42 --inv --o /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz 8.0.0 cwd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A cmdline mri_binarize --i /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/synthseg.rca.mgz --match 3 42 --inv --o /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz sysname Linux hostname c-02-18 machine x86_64 user dal247378 input /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/synthseg.rca.mgz frame 0 nErode3d 0 nErode2d 0 output /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz Binarizing based on matching values nMatch 2 0 3 1 42 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 575246 values in range Counting number of voxels in first frame Found 575246 voxels in final mask Writing output to /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz Count: 575246 575246.000000 16777216 3.428733 mri_binarize done mri_vol2vol --mov /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz --targ /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/nu.mgz --interp nearest --o /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/vsinus.mgz --regheader movvol /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/vsinus.crop-to-prior.norev.mgz targvol /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/nu.mgz outvol /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/vsinus.mgz invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1777430610 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 2.00000; 0.00000 1.00000 0.00000 46.00000; 0.00000 0.00000 1.00000 -45.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 -58.00000; 0.00000 1.00000 0.00000 -11.00000; 0.00000 0.00000 1.00000 -10.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_mask /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/vsinus.mgz /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/tmp.vsinus/ctxsegmask.mgz /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/vsinus.mgz DoAbs = 0 maskval=0, outval=0 Writing masked volume to /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/vsinus.mgz...done. mri_segstats --i /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/nu.mgz --seg /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/vsinus.mgz --sum /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/stats/vsinus.stats --subject sub-01EN91PG_ses-00A --etiv 8.0.0 cwd cmdline mri_segstats --i /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/nu.mgz --seg /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/vsinus.mgz --sum /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/stats/vsinus.stats --subject sub-01EN91PG_ses-00A --etiv sysname Linux hostname c-02-18 machine x86_64 user dal247378 whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1436161 mm^3 (det: 1.356467 ) Loading /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/vsinus.mgz Using embedded color table (and excluding seg 0) Loading /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/nu.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 6 segmentations Computing statistics for each segmentation Reporting on 5 segmentations Using PrintSegStat mri_segstats done fsvglrun freeview --hide-3d-slices --view coronal -neuro-view /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/nu.mgz:lock=1 /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri/vsinus.mgz:isosurface=1:outline=1 Started at Tue Apr 21 13:09:46 CDT 2026 Ended at Tue Apr 21 13:10:10 CDT 2026 Mri_Vsinus_Seg-Run-Time-Sec 24 Mri_Vsinus_Seg-Run-Time-Min 0.40 Mri_Vsinus_Seg-Run-Time-Hours 0.01 mri_vsinus_seg Done #-------------------------------------- #@# EntoWM Segmentation Tue Apr 21 13:10:11 CDT 2026 EntoWM Segmentation does not need to be updated 1 3006 736 750.9857 wm-lh-entorhinal 2 3201 184 198.4255 wm-lh-gyrus-ambiens 3 4006 878 923.0496 wm-rh-entorhinal 4 4201 208 223.3063 wm-rh-gyrus-ambiens #-------------------------------------- #@# CC Seg Tue Apr 21 13:10:11 CDT 2026 seg2cc --s sub-01EN91PG_ses-00A seg2cc: update not needed. Run with --force-update to force an update #-------------------------------------- #@# Merge ASeg Tue Apr 21 13:10:11 CDT 2026 cp aseg.auto.mgz aseg.presurf.mgz #@# white curv lh Tue Apr 21 13:10:11 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv insurf ../surf/lh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv type -1 #@# white area lh Tue Apr 21 13:10:12 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area writing curvature file ../surf/lh.area type -1 #@# pial curv lh Tue Apr 21 13:10:12 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial insurf ../surf/lh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv.pial type -1 #@# pial area lh Tue Apr 21 13:10:14 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial Update not needed #@# thickness lh Tue Apr 21 13:10:14 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness 0 of 130161 vertices processed 25000 of 130161 vertices processed 50000 of 130161 vertices processed 75000 of 130161 vertices processed 100000 of 130161 vertices processed 125000 of 130161 vertices processed 0 of 130161 vertices processed 25000 of 130161 vertices processed 50000 of 130161 vertices processed 75000 of 130161 vertices processed 100000 of 130161 vertices processed 125000 of 130161 vertices processed thickness calculation complete, 319:2142 truncations. 49140 vertices at 0 distance 99901 vertices at 1 distance 69686 vertices at 2 distance 26591 vertices at 3 distance 9257 vertices at 4 distance 3253 vertices at 5 distance 1245 vertices at 6 distance 504 vertices at 7 distance 202 vertices at 8 distance 114 vertices at 9 distance 81 vertices at 10 distance 43 vertices at 11 distance 43 vertices at 12 distance 35 vertices at 13 distance 34 vertices at 14 distance 44 vertices at 15 distance 34 vertices at 16 distance 33 vertices at 17 distance 27 vertices at 18 distance 22 vertices at 19 distance 33 vertices at 20 distance writing curvature file ../surf/lh.thickness type -1 #@# area and vertex vol lh Tue Apr 21 13:10:32 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12416 mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12420 mris_convert --volume sub-01EN91PG_ses-00A lh /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/lh.volume mris_convert --volume sub-01EN91PG_ses-00A lh /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/lh.volume masking with /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/label/lh.cortex.label Total face volume 284653 Total vertex volume 284504 (mask=0) #@# sub-01EN91PG_ses-00A lh 284504 vertexvol Done #@# white curv rh Tue Apr 21 13:10:33 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv insurf ../surf/rh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv type -1 #@# white area rh Tue Apr 21 13:10:34 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area Update not needed #@# pial curv rh Tue Apr 21 13:10:34 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial Update not needed #@# pial area rh Tue Apr 21 13:10:34 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial Update not needed #@# thickness rh Tue Apr 21 13:10:34 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness Update not needed #@# area and vertex vol rh Tue Apr 21 13:10:34 CDT 2026 cd /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/mri /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12400 mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] #VMPC# mris_calc VmPeak 12404 mris_convert --volume sub-01EN91PG_ses-00A rh /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/rh.volume mris_convert --volume sub-01EN91PG_ses-00A rh /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/rh.volume masking with /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/label/rh.cortex.label Total face volume 283936 Total vertex volume 283778 (mask=0) #@# sub-01EN91PG_ses-00A rh 283778 vertexvol Done /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf #-------------------------------------------- #@# Local Gyrification Index lh Tue Apr 21 13:10:35 CDT 2026 mris_compute_lgi --i lh.pial ================= rm -Rf /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 62004 voxel in cpt #1: X=2 [v=62004,e=186006,f=124004] located at (-23.445295, -5.641486, 41.987194) For the whole surface: X=2 [v=62004,e=186006,f=124004] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 62004 - 186006 + 124004 = 2 --> 0 holes F =2V-4: 124004 = 124008-4 (0) 2E=3F: 372012 = 372012 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= mris_convert -n lh.pial-outer-smoothed /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc Reading in lh.pial-outer-smoothed Outputting normals /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial','/tmp/tmp.5wNPMC.m'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.06 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 18.7100 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial','/tmp/tmp.arl7q6.m'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.05 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 124004 face 10000 / 124004 face 15000 / 124004 face 20000 / 124004 face 25000 / 124004 face 30000 / 124004 face 35000 / 124004 face 40000 / 124004 face 45000 / 124004 face 50000 / 124004 face 55000 / 124004 face 60000 / 124004 face 65000 / 124004 face 70000 / 124004 face 75000 / 124004 face 80000 / 124004 face 85000 / 124004 face 90000 / 124004 face 95000 / 124004 face 100000 / 124004 face 105000 / 124004 face 110000 / 124004 face 115000 / 124004 face 120000 / 124004 mesh_outer = struct with fields: vertices: [62004x3 double] faces: [124004x3 double] facesOfVertex: [62004x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (51.48 sec). ... creating path file for vertex 1 / 62004 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 62004 ... creating path file for vertex 201 / 62004 ... creating path file for vertex 301 / 62004 ... creating path file for vertex 401 / 62004 ... creating path file for vertex 501 / 62004 ... creating path file for vertex 601 / 62004 ... creating path file for vertex 701 / 62004 ... creating path file for vertex 801 / 62004 ... creating path file for vertex 901 / 62004 ... creating path file for vertex 1001 / 62004 ... creating path file for vertex 1101 / 62004 ... creating path file for vertex 1201 / 62004 ... creating path file for vertex 1301 / 62004 ... creating path file for vertex 1401 / 62004 ... creating path file for vertex 1501 / 62004 ... creating path file for vertex 1601 / 62004 ... creating path file for vertex 1701 / 62004 ... creating path file for vertex 1801 / 62004 ... creating path file for vertex 1901 / 62004 ... creating path file for vertex 2001 / 62004 ... creating path file for vertex 2101 / 62004 ... creating path file for vertex 2201 / 62004 ... creating path file for vertex 2301 / 62004 ... creating path file for vertex 2401 / 62004 ... creating path file for vertex 2501 / 62004 ... creating path file for vertex 2601 / 62004 ... creating path file for vertex 2701 / 62004 ... creating path file for vertex 2801 / 62004 ... creating path file for vertex 2901 / 62004 ... creating path file for vertex 3001 / 62004 ... creating path file for vertex 3101 / 62004 ... creating path file for vertex 3201 / 62004 ... creating path file for vertex 3301 / 62004 ... creating path file for vertex 3401 / 62004 ... creating path file for vertex 3501 / 62004 ... creating path file for vertex 3601 / 62004 ... creating path file for vertex 3701 / 62004 ... creating path file for vertex 3801 / 62004 ... creating path file for vertex 3901 / 62004 ... creating path file for vertex 4001 / 62004 ... creating path file for vertex 4101 / 62004 ... creating path file for vertex 4201 / 62004 ... creating path file for vertex 4301 / 62004 ... creating path file for vertex 4401 / 62004 ... creating path file for vertex 4501 / 62004 ... creating path file for vertex 4601 / 62004 ... creating path file for vertex 4701 / 62004 ... creating path file for vertex 4801 / 62004 ... creating path file for vertex 4901 / 62004 ... creating path file for vertex 5001 / 62004 area file for outer ROIs saved at 5001 ... creating path file for vertex 5101 / 62004 ... creating path file for vertex 5201 / 62004 ... creating path file for vertex 5301 / 62004 ... creating path file for vertex 5401 / 62004 ... creating path file for vertex 5501 / 62004 ... creating path file for vertex 5601 / 62004 ... creating path file for vertex 5701 / 62004 ... creating path file for vertex 5801 / 62004 ... creating path file for vertex 5901 / 62004 ... creating path file for vertex 6001 / 62004 ... creating path file for vertex 6101 / 62004 ... creating path file for vertex 6201 / 62004 ... creating path file for vertex 6301 / 62004 ... creating path file for vertex 6401 / 62004 ... creating path file for vertex 6501 / 62004 ... creating path file for vertex 6601 / 62004 ... creating path file for vertex 6701 / 62004 ... creating path file for vertex 6801 / 62004 ... creating path file for vertex 6901 / 62004 ... creating path file for vertex 7001 / 62004 ... creating path file for vertex 7101 / 62004 ... creating path file for vertex 7201 / 62004 ... creating path file for vertex 7301 / 62004 ... creating path file for vertex 7401 / 62004 ... creating path file for vertex 7501 / 62004 ... creating path file for vertex 7601 / 62004 ... creating path file for vertex 7701 / 62004 ... creating path file for vertex 7801 / 62004 ... creating path file for vertex 7901 / 62004 ... creating path file for vertex 8001 / 62004 ... creating path file for vertex 8101 / 62004 ... creating path file for vertex 8201 / 62004 ... creating path file for vertex 8301 / 62004 ... creating path file for vertex 8401 / 62004 ... creating path file for vertex 8501 / 62004 ... creating path file for vertex 8601 / 62004 ... creating path file for vertex 8701 / 62004 ... creating path file for vertex 8801 / 62004 ... creating path file for vertex 8901 / 62004 ... creating path file for vertex 9001 / 62004 ... creating path file for vertex 9101 / 62004 ... creating path file for vertex 9201 / 62004 ... creating path file for vertex 9301 / 62004 ... creating path file for vertex 9401 / 62004 ... creating path file for vertex 9501 / 62004 ... creating path file for vertex 9601 / 62004 ... creating path file for vertex 9701 / 62004 ... creating path file for vertex 9801 / 62004 ... creating path file for vertex 9901 / 62004 ... creating path file for vertex 10001 / 62004 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 62004 ... creating path file for vertex 10201 / 62004 ... creating path file for vertex 10301 / 62004 ... creating path file for vertex 10401 / 62004 ... creating path file for vertex 10501 / 62004 ... creating path file for vertex 10601 / 62004 ... creating path file for vertex 10701 / 62004 ... creating path file for vertex 10801 / 62004 ... creating path file for vertex 10901 / 62004 ... creating path file for vertex 11001 / 62004 ... creating path file for vertex 11101 / 62004 ... creating path file for vertex 11201 / 62004 ... creating path file for vertex 11301 / 62004 ... creating path file for vertex 11401 / 62004 ... creating path file for vertex 11501 / 62004 ... creating path file for vertex 11601 / 62004 ... creating path file for vertex 11701 / 62004 ... creating path file for vertex 11801 / 62004 ... creating path file for vertex 11901 / 62004 ... creating path file for vertex 12001 / 62004 ... creating path file for vertex 12101 / 62004 ... creating path file for vertex 12201 / 62004 ... creating path file for vertex 12301 / 62004 ... creating path file for vertex 12401 / 62004 ... creating path file for vertex 12501 / 62004 ... creating path file for vertex 12601 / 62004 ... creating path file for vertex 12701 / 62004 ... creating path file for vertex 12801 / 62004 ... creating path file for vertex 12901 / 62004 ... creating path file for vertex 13001 / 62004 ... creating path file for vertex 13101 / 62004 ... creating path file for vertex 13201 / 62004 ... creating path file for vertex 13301 / 62004 ... creating path file for vertex 13401 / 62004 ... creating path file for vertex 13501 / 62004 ... creating path file for vertex 13601 / 62004 ... creating path file for vertex 13701 / 62004 ... creating path file for vertex 13801 / 62004 ... creating path file for vertex 13901 / 62004 ... creating path file for vertex 14001 / 62004 ... creating path file for vertex 14101 / 62004 ... creating path file for vertex 14201 / 62004 ... creating path file for vertex 14301 / 62004 ... creating path file for vertex 14401 / 62004 ... creating path file for vertex 14501 / 62004 ... creating path file for vertex 14601 / 62004 ... creating path file for vertex 14701 / 62004 ... creating path file for vertex 14801 / 62004 ... creating path file for vertex 14901 / 62004 ... creating path file for vertex 15001 / 62004 area file for outer ROIs saved at 15001 ... creating path file for vertex 15101 / 62004 ... creating path file for vertex 15201 / 62004 ... creating path file for vertex 15301 / 62004 ... creating path file for vertex 15401 / 62004 ... creating path file for vertex 15501 / 62004 ... creating path file for vertex 15601 / 62004 ... creating path file for vertex 15701 / 62004 ... creating path file for vertex 15801 / 62004 ... creating path file for vertex 15901 / 62004 ... creating path file for vertex 16001 / 62004 ... creating path file for vertex 16101 / 62004 ... creating path file for vertex 16201 / 62004 ... creating path file for vertex 16301 / 62004 ... creating path file for vertex 16401 / 62004 ... creating path file for vertex 16501 / 62004 ... creating path file for vertex 16601 / 62004 ... creating path file for vertex 16701 / 62004 ... creating path file for vertex 16801 / 62004 ... creating path file for vertex 16901 / 62004 ... creating path file for vertex 17001 / 62004 ... creating path file for vertex 17101 / 62004 ... creating path file for vertex 17201 / 62004 ... creating path file for vertex 17301 / 62004 ... creating path file for vertex 17401 / 62004 ... creating path file for vertex 17501 / 62004 ... creating path file for vertex 17601 / 62004 ... creating path file for vertex 17701 / 62004 ... creating path file for vertex 17801 / 62004 ... creating path file for vertex 17901 / 62004 ... creating path file for vertex 18001 / 62004 ... creating path file for vertex 18101 / 62004 ... creating path file for vertex 18201 / 62004 ... creating path file for vertex 18301 / 62004 ... creating path file for vertex 18401 / 62004 ... creating path file for vertex 18501 / 62004 ... creating path file for vertex 18601 / 62004 ... creating path file for vertex 18701 / 62004 ... creating path file for vertex 18801 / 62004 ... creating path file for vertex 18901 / 62004 non geodesic regions removed from the patch ... creating path file for vertex 19001 / 62004 ... creating path file for vertex 19101 / 62004 ... creating path file for vertex 19201 / 62004 ... creating path file for vertex 19301 / 62004 ... creating path file for vertex 19401 / 62004 ... creating path file for vertex 19501 / 62004 ... creating path file for vertex 19601 / 62004 ... creating path file for vertex 19701 / 62004 ... creating path file for vertex 19801 / 62004 ... creating path file for vertex 19901 / 62004 ... creating path file for vertex 20001 / 62004 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 62004 ... creating path file for vertex 20201 / 62004 ... creating path file for vertex 20301 / 62004 ... creating path file for vertex 20401 / 62004 ... creating path file for vertex 20501 / 62004 ... creating path file for vertex 20601 / 62004 ... creating path file for vertex 20701 / 62004 ... creating path file for vertex 20801 / 62004 ... creating path file for vertex 20901 / 62004 ... creating path file for vertex 21001 / 62004 ... creating path file for vertex 21101 / 62004 ... creating path file for vertex 21201 / 62004 ... creating path file for vertex 21301 / 62004 ... creating path file for vertex 21401 / 62004 ... creating path file for vertex 21501 / 62004 ... creating path file for vertex 21601 / 62004 ... creating path file for vertex 21701 / 62004 ... creating path file for vertex 21801 / 62004 ... creating path file for vertex 21901 / 62004 ... creating path file for vertex 22001 / 62004 ... creating path file for vertex 22101 / 62004 ... creating path file for vertex 22201 / 62004 ... creating path file for vertex 22301 / 62004 ... creating path file for vertex 22401 / 62004 ... creating path file for vertex 22501 / 62004 ... creating path file for vertex 22601 / 62004 ... creating path file for vertex 22701 / 62004 ... creating path file for vertex 22801 / 62004 ... creating path file for vertex 22901 / 62004 ... creating path file for vertex 23001 / 62004 ... creating path file for vertex 23101 / 62004 ... creating path file for vertex 23201 / 62004 ... creating path file for vertex 23301 / 62004 ... creating path file for vertex 23401 / 62004 ... creating path file for vertex 23501 / 62004 ... creating path file for vertex 23601 / 62004 ... creating path file for vertex 23701 / 62004 ... creating path file for vertex 23801 / 62004 ... creating path file for vertex 23901 / 62004 ... creating path file for vertex 24001 / 62004 ... creating path file for vertex 24101 / 62004 ... creating path file for vertex 24201 / 62004 ... creating path file for vertex 24301 / 62004 ... creating path file for vertex 24401 / 62004 ... creating path file for vertex 24501 / 62004 ... creating path file for vertex 24601 / 62004 ... creating path file for vertex 24701 / 62004 ... creating path file for vertex 24801 / 62004 ... creating path file for vertex 24901 / 62004 ... creating path file for vertex 25001 / 62004 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 62004 ... creating path file for vertex 25201 / 62004 ... creating path file for vertex 25301 / 62004 ... creating path file for vertex 25401 / 62004 ... creating path file for vertex 25501 / 62004 ... creating path file for vertex 25601 / 62004 ... creating path file for vertex 25701 / 62004 ... creating path file for vertex 25801 / 62004 ... creating path file for vertex 25901 / 62004 ... creating path file for vertex 26001 / 62004 ... creating path file for vertex 26101 / 62004 ... creating path file for vertex 26201 / 62004 ... creating path file for vertex 26301 / 62004 ... creating path file for vertex 26401 / 62004 ... creating path file for vertex 26501 / 62004 ... creating path file for vertex 26601 / 62004 ... creating path file for vertex 26701 / 62004 ... creating path file for vertex 26801 / 62004 ... creating path file for vertex 26901 / 62004 ... creating path file for vertex 27001 / 62004 ... creating path file for vertex 27101 / 62004 ... creating path file for vertex 27201 / 62004 ... creating path file for vertex 27301 / 62004 ... creating path file for vertex 27401 / 62004 ... creating path file for vertex 27501 / 62004 ... creating path file for vertex 27601 / 62004 ... creating path file for vertex 27701 / 62004 ... creating path file for vertex 27801 / 62004 ... creating path file for vertex 27901 / 62004 ... creating path file for vertex 28001 / 62004 ... creating path file for vertex 28101 / 62004 ... creating path file for vertex 28201 / 62004 ... creating path file for vertex 28301 / 62004 Launching updater executable ... creating path file for vertex 28401 / 62004 ... creating path file for vertex 28501 / 62004 ... creating path file for vertex 28601 / 62004 ... creating path file for vertex 28701 / 62004 ... creating path file for vertex 28801 / 62004 ... creating path file for vertex 28901 / 62004 ... creating path file for vertex 29001 / 62004 ... creating path file for vertex 29101 / 62004 ... creating path file for vertex 29201 / 62004 ... creating path file for vertex 29301 / 62004 ... creating path file for vertex 29401 / 62004 ... creating path file for vertex 29501 / 62004 ... creating path file for vertex 29601 / 62004 ... creating path file for vertex 29701 / 62004 ... creating path file for vertex 29801 / 62004 ... creating path file for vertex 29901 / 62004 ... creating path file for vertex 30001 / 62004 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 62004 ... creating path file for vertex 30201 / 62004 ... creating path file for vertex 30301 / 62004 ... creating path file for vertex 30401 / 62004 ... creating path file for vertex 30501 / 62004 ... creating path file for vertex 30601 / 62004 ... creating path file for vertex 30701 / 62004 ... creating path file for vertex 30801 / 62004 ... creating path file for vertex 30901 / 62004 ... creating path file for vertex 31001 / 62004 ... creating path file for vertex 31101 / 62004 ... creating path file for vertex 31201 / 62004 ... creating path file for vertex 31301 / 62004 ... creating path file for vertex 31401 / 62004 ... creating path file for vertex 31501 / 62004 ... creating path file for vertex 31601 / 62004 ... creating path file for vertex 31701 / 62004 ... creating path file for vertex 31801 / 62004 ... creating path file for vertex 31901 / 62004 ... creating path file for vertex 32001 / 62004 ... creating path file for vertex 32101 / 62004 ... creating path file for vertex 32201 / 62004 ... creating path file for vertex 32301 / 62004 ... creating path file for vertex 32401 / 62004 ... creating path file for vertex 32501 / 62004 ... creating path file for vertex 32601 / 62004 ... creating path file for vertex 32701 / 62004 ... creating path file for vertex 32801 / 62004 ... creating path file for vertex 32901 / 62004 ... creating path file for vertex 33001 / 62004 ... creating path file for vertex 33101 / 62004 ... creating path file for vertex 33201 / 62004 ... creating path file for vertex 33301 / 62004 ... creating path file for vertex 33401 / 62004 ... creating path file for vertex 33501 / 62004 ... creating path file for vertex 33601 / 62004 ... creating path file for vertex 33701 / 62004 ... creating path file for vertex 33801 / 62004 ... creating path file for vertex 33901 / 62004 ... creating path file for vertex 34001 / 62004 ... creating path file for vertex 34101 / 62004 ... creating path file for vertex 34201 / 62004 ... creating path file for vertex 34301 / 62004 ... creating path file for vertex 34401 / 62004 ... creating path file for vertex 34501 / 62004 ... creating path file for vertex 34601 / 62004 ... creating path file for vertex 34701 / 62004 ... creating path file for vertex 34801 / 62004 ... creating path file for vertex 34901 / 62004 ... creating path file for vertex 35001 / 62004 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 62004 ... creating path file for vertex 35201 / 62004 ... creating path file for vertex 35301 / 62004 ... creating path file for vertex 35401 / 62004 ... creating path file for vertex 35501 / 62004 ... creating path file for vertex 35601 / 62004 ... creating path file for vertex 35701 / 62004 ... creating path file for vertex 35801 / 62004 ... creating path file for vertex 35901 / 62004 ... creating path file for vertex 36001 / 62004 ... creating path file for vertex 36101 / 62004 ... creating path file for vertex 36201 / 62004 ... creating path file for vertex 36301 / 62004 ... creating path file for vertex 36401 / 62004 ... creating path file for vertex 36501 / 62004 ... creating path file for vertex 36601 / 62004 ... creating path file for vertex 36701 / 62004 ... creating path file for vertex 36801 / 62004 ... creating path file for vertex 36901 / 62004 ... creating path file for vertex 37001 / 62004 ... creating path file for vertex 37101 / 62004 ... creating path file for vertex 37201 / 62004 ... creating path file for vertex 37301 / 62004 ... creating path file for vertex 37401 / 62004 ... creating path file for vertex 37501 / 62004 ... creating path file for vertex 37601 / 62004 ... creating path file for vertex 37701 / 62004 ... creating path file for vertex 37801 / 62004 ... creating path file for vertex 37901 / 62004 ... creating path file for vertex 38001 / 62004 ... creating path file for vertex 38101 / 62004 ... creating path file for vertex 38201 / 62004 ... creating path file for vertex 38301 / 62004 ... creating path file for vertex 38401 / 62004 ... creating path file for vertex 38501 / 62004 ... creating path file for vertex 38601 / 62004 ... creating path file for vertex 38701 / 62004 ... creating path file for vertex 38801 / 62004 ... creating path file for vertex 38901 / 62004 ... creating path file for vertex 39001 / 62004 ... creating path file for vertex 39101 / 62004 ... creating path file for vertex 39201 / 62004 ... creating path file for vertex 39301 / 62004 ... creating path file for vertex 39401 / 62004 ... creating path file for vertex 39501 / 62004 ... creating path file for vertex 39601 / 62004 ... creating path file for vertex 39701 / 62004 ... creating path file for vertex 39801 / 62004 ... creating path file for vertex 39901 / 62004 ... creating path file for vertex 40001 / 62004 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 62004 ... creating path file for vertex 40201 / 62004 ... creating path file for vertex 40301 / 62004 ... creating path file for vertex 40401 / 62004 ... creating path file for vertex 40501 / 62004 ... creating path file for vertex 40601 / 62004 ... creating path file for vertex 40701 / 62004 ... creating path file for vertex 40801 / 62004 ... creating path file for vertex 40901 / 62004 ... creating path file for vertex 41001 / 62004 ... creating path file for vertex 41101 / 62004 ... creating path file for vertex 41201 / 62004 ... creating path file for vertex 41301 / 62004 ... creating path file for vertex 41401 / 62004 ... creating path file for vertex 41501 / 62004 ... creating path file for vertex 41601 / 62004 ... creating path file for vertex 41701 / 62004 ... creating path file for vertex 41801 / 62004 ... creating path file for vertex 41901 / 62004 ... creating path file for vertex 42001 / 62004 ... creating path file for vertex 42101 / 62004 ... creating path file for vertex 42201 / 62004 ... creating path file for vertex 42301 / 62004 ... creating path file for vertex 42401 / 62004 ... creating path file for vertex 42501 / 62004 ... creating path file for vertex 42601 / 62004 ... creating path file for vertex 42701 / 62004 ... creating path file for vertex 42801 / 62004 ... creating path file for vertex 42901 / 62004 ... creating path file for vertex 43001 / 62004 ... creating path file for vertex 43101 / 62004 ... creating path file for vertex 43201 / 62004 ... creating path file for vertex 43301 / 62004 ... creating path file for vertex 43401 / 62004 ... creating path file for vertex 43501 / 62004 ... creating path file for vertex 43601 / 62004 ... creating path file for vertex 43701 / 62004 ... creating path file for vertex 43801 / 62004 ... creating path file for vertex 43901 / 62004 ... creating path file for vertex 44001 / 62004 ... creating path file for vertex 44101 / 62004 ... creating path file for vertex 44201 / 62004 ... creating path file for vertex 44301 / 62004 ... creating path file for vertex 44401 / 62004 ... creating path file for vertex 44501 / 62004 ... creating path file for vertex 44601 / 62004 ... creating path file for vertex 44701 / 62004 ... creating path file for vertex 44801 / 62004 ... creating path file for vertex 44901 / 62004 ... creating path file for vertex 45001 / 62004 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 62004 ... creating path file for vertex 45201 / 62004 ... creating path file for vertex 45301 / 62004 ... creating path file for vertex 45401 / 62004 ... creating path file for vertex 45501 / 62004 ... creating path file for vertex 45601 / 62004 ... creating path file for vertex 45701 / 62004 ... creating path file for vertex 45801 / 62004 ... creating path file for vertex 45901 / 62004 ... creating path file for vertex 46001 / 62004 ... creating path file for vertex 46101 / 62004 ... creating path file for vertex 46201 / 62004 ... creating path file for vertex 46301 / 62004 ... creating path file for vertex 46401 / 62004 ... creating path file for vertex 46501 / 62004 ... creating path file for vertex 46601 / 62004 ... creating path file for vertex 46701 / 62004 ... creating path file for vertex 46801 / 62004 ... creating path file for vertex 46901 / 62004 ... creating path file for vertex 47001 / 62004 ... creating path file for vertex 47101 / 62004 ... creating path file for vertex 47201 / 62004 ... creating path file for vertex 47301 / 62004 ... creating path file for vertex 47401 / 62004 ... creating path file for vertex 47501 / 62004 ... creating path file for vertex 47601 / 62004 ... creating path file for vertex 47701 / 62004 ... creating path file for vertex 47801 / 62004 ... creating path file for vertex 47901 / 62004 ... creating path file for vertex 48001 / 62004 ... creating path file for vertex 48101 / 62004 ... creating path file for vertex 48201 / 62004 ... creating path file for vertex 48301 / 62004 ... creating path file for vertex 48401 / 62004 ... creating path file for vertex 48501 / 62004 ... creating path file for vertex 48601 / 62004 ... creating path file for vertex 48701 / 62004 ... creating path file for vertex 48801 / 62004 ... creating path file for vertex 48901 / 62004 ... creating path file for vertex 49001 / 62004 ... creating path file for vertex 49101 / 62004 ... creating path file for vertex 49201 / 62004 ... creating path file for vertex 49301 / 62004 ... creating path file for vertex 49401 / 62004 ... creating path file for vertex 49501 / 62004 ... creating path file for vertex 49601 / 62004 ... creating path file for vertex 49701 / 62004 ... creating path file for vertex 49801 / 62004 ... creating path file for vertex 49901 / 62004 ... creating path file for vertex 50001 / 62004 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 62004 ... creating path file for vertex 50201 / 62004 ... creating path file for vertex 50301 / 62004 ... creating path file for vertex 50401 / 62004 ... creating path file for vertex 50501 / 62004 ... creating path file for vertex 50601 / 62004 ... creating path file for vertex 50701 / 62004 ... creating path file for vertex 50801 / 62004 ... creating path file for vertex 50901 / 62004 ... creating path file for vertex 51001 / 62004 ... creating path file for vertex 51101 / 62004 ... creating path file for vertex 51201 / 62004 ... creating path file for vertex 51301 / 62004 ... creating path file for vertex 51401 / 62004 ... creating path file for vertex 51501 / 62004 ... creating path file for vertex 51601 / 62004 ... creating path file for vertex 51701 / 62004 ... creating path file for vertex 51801 / 62004 ... creating path file for vertex 51901 / 62004 ... creating path file for vertex 52001 / 62004 ... creating path file for vertex 52101 / 62004 ... creating path file for vertex 52201 / 62004 ... creating path file for vertex 52301 / 62004 ... creating path file for vertex 52401 / 62004 ... creating path file for vertex 52501 / 62004 ... creating path file for vertex 52601 / 62004 ... creating path file for vertex 52701 / 62004 ... creating path file for vertex 52801 / 62004 ... creating path file for vertex 52901 / 62004 ... creating path file for vertex 53001 / 62004 ... creating path file for vertex 53101 / 62004 ... creating path file for vertex 53201 / 62004 ... creating path file for vertex 53301 / 62004 ... creating path file for vertex 53401 / 62004 ... creating path file for vertex 53501 / 62004 ... creating path file for vertex 53601 / 62004 ... creating path file for vertex 53701 / 62004 ... creating path file for vertex 53801 / 62004 ... creating path file for vertex 53901 / 62004 ... creating path file for vertex 54001 / 62004 ... creating path file for vertex 54101 / 62004 ... creating path file for vertex 54201 / 62004 ... creating path file for vertex 54301 / 62004 ... creating path file for vertex 54401 / 62004 ... creating path file for vertex 54501 / 62004 ... creating path file for vertex 54601 / 62004 ... creating path file for vertex 54701 / 62004 ... creating path file for vertex 54801 / 62004 ... creating path file for vertex 54901 / 62004 ... creating path file for vertex 55001 / 62004 area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 62004 ... creating path file for vertex 55201 / 62004 ... creating path file for vertex 55301 / 62004 ... creating path file for vertex 55401 / 62004 ... creating path file for vertex 55501 / 62004 ... creating path file for vertex 55601 / 62004 ... creating path file for vertex 55701 / 62004 ... creating path file for vertex 55801 / 62004 ... creating path file for vertex 55901 / 62004 ... creating path file for vertex 56001 / 62004 ... creating path file for vertex 56101 / 62004 ... creating path file for vertex 56201 / 62004 ... creating path file for vertex 56301 / 62004 ... creating path file for vertex 56401 / 62004 ... creating path file for vertex 56501 / 62004 ... creating path file for vertex 56601 / 62004 ... creating path file for vertex 56701 / 62004 ... creating path file for vertex 56801 / 62004 ... creating path file for vertex 56901 / 62004 ... creating path file for vertex 57001 / 62004 ... creating path file for vertex 57101 / 62004 ... creating path file for vertex 57201 / 62004 ... creating path file for vertex 57301 / 62004 ... creating path file for vertex 57401 / 62004 ... creating path file for vertex 57501 / 62004 ... creating path file for vertex 57601 / 62004 ... creating path file for vertex 57701 / 62004 ... creating path file for vertex 57801 / 62004 ... creating path file for vertex 57901 / 62004 ... creating path file for vertex 58001 / 62004 ... creating path file for vertex 58101 / 62004 ... creating path file for vertex 58201 / 62004 ... creating path file for vertex 58301 / 62004 ... creating path file for vertex 58401 / 62004 ... creating path file for vertex 58501 / 62004 ... creating path file for vertex 58601 / 62004 ... creating path file for vertex 58701 / 62004 ... creating path file for vertex 58801 / 62004 ... creating path file for vertex 58901 / 62004 ... creating path file for vertex 59001 / 62004 ... creating path file for vertex 59101 / 62004 ... creating path file for vertex 59201 / 62004 ... creating path file for vertex 59301 / 62004 ... creating path file for vertex 59401 / 62004 ... creating path file for vertex 59501 / 62004 ... creating path file for vertex 59601 / 62004 ... creating path file for vertex 59701 / 62004 ... creating path file for vertex 59801 / 62004 ... creating path file for vertex 59901 / 62004 ... creating path file for vertex 60001 / 62004 area file for outer ROIs saved at 60001 ... creating path file for vertex 60101 / 62004 ... creating path file for vertex 60201 / 62004 ... creating path file for vertex 60301 / 62004 ... creating path file for vertex 60401 / 62004 ... creating path file for vertex 60501 / 62004 ... creating path file for vertex 60601 / 62004 ... creating path file for vertex 60701 / 62004 ... creating path file for vertex 60801 / 62004 ... creating path file for vertex 60901 / 62004 ... creating path file for vertex 61001 / 62004 ... creating path file for vertex 61101 / 62004 ... creating path file for vertex 61201 / 62004 ... creating path file for vertex 61301 / 62004 ... creating path file for vertex 61401 / 62004 ... creating path file for vertex 61501 / 62004 ... creating path file for vertex 61601 / 62004 ... creating path file for vertex 61701 / 62004 ... creating path file for vertex 61801 / 62004 ... creating path file for vertex 61901 / 62004 ... creating path file for vertex 62001 / 62004 saving area file in matlab format... DONE. deltaT = 6.9003e+03 ================= mri_path2label --confillxfn lh.pial /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input ================= Reading lh.pial Connecting and filling vertices in path at fillseed 220 Finding path...................................................................................................................................................................... done Filling 220 nlabel 5787 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000001.label Connecting and filling vertices in path at fillseed 60 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60 nlabel 7313 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000101.label Connecting and filling vertices in path at fillseed 182 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 182 nlabel 7500 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000201.label Connecting and filling vertices in path at fillseed 33 Finding path........................................................................................................................................................ done Filling 33 nlabel 7183 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000301.label Connecting and filling vertices in path at fillseed 116015 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 116015 nlabel 7404 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000401.label Connecting and filling vertices in path at fillseed 355 Finding path................................................................................................................................................................... done Filling 355 nlabel 7339 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000501.label Connecting and filling vertices in path at fillseed 555 Finding path......................................................................................................................................................................... done Filling 555 nlabel 5755 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000601.label Connecting and filling vertices in path at fillseed 352 Finding path..................................................................................................................................................................................................... done Filling 352 nlabel 7291 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000701.label Connecting and filling vertices in path at fillseed 111711 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111711 nlabel 8926 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000801.label Connecting and filling vertices in path at fillseed 1000 Finding path............................................................................................................................................................................. done Filling 1000 nlabel 6824 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000901.label Connecting and filling vertices in path at fillseed 588 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 588 nlabel 8464 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001001.label Connecting and filling vertices in path at fillseed 1283 Finding path.......................................................................................................................................................................................... done Filling 1283 nlabel 6835 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001101.label Connecting and filling vertices in path at fillseed 124438 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 124438 nlabel 8372 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001201.label Connecting and filling vertices in path at fillseed 862 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 862 nlabel 6977 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001301.label Connecting and filling vertices in path at fillseed 857 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 857 nlabel 8457 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001401.label Connecting and filling vertices in path at fillseed 1292 Finding path.............................................................................................................................................................. done Filling 1292 nlabel 5711 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001501.label Connecting and filling vertices in path at fillseed 1290 Finding path..................................................................................................................................................................................... done Filling 1290 nlabel 6885 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001601.label Connecting and filling vertices in path at fillseed 1084 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 1084 nlabel 8328 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001701.label Connecting and filling vertices in path at fillseed 1575 Finding path............................................................................................................................................................ done Filling 1575 nlabel 5964 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001801.label Connecting and filling vertices in path at fillseed 1927 Finding path............................................................................................................................................................................................................................................................................... done Filling 1927 nlabel 5918 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001901.label Connecting and filling vertices in path at fillseed 129435 Finding path............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 129435 nlabel 7202 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002001.label Connecting and filling vertices in path at fillseed 121098 Finding path............................................................................................................................................... done Filling 121098 nlabel 6191 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002101.label Connecting and filling vertices in path at fillseed 2176 Finding path................................................................................................................................................................................................................................................................ done Filling 2176 nlabel 6755 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002201.label Connecting and filling vertices in path at fillseed 116044 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 116044 nlabel 8556 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002301.label Connecting and filling vertices in path at fillseed 2545 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 2545 nlabel 10041 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002401.label Connecting and filling vertices in path at fillseed 3044 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3044 nlabel 8295 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002501.label Connecting and filling vertices in path at fillseed 3111 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3111 nlabel 7494 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002601.label Connecting and filling vertices in path at fillseed 2930 Finding path..................................................................................................................................................... done Filling 2930 nlabel 6152 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002701.label Connecting and filling vertices in path at fillseed 3606 Finding path......................................................................................................................................................................................................................... done Filling 3606 nlabel 7270 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002801.label Connecting and filling vertices in path at fillseed 3207 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 3207 nlabel 6755 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002901.label Connecting and filling vertices in path at fillseed 2947 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 2947 nlabel 8680 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003001.label Connecting and filling vertices in path at fillseed 3200 Finding path.................................................................................................................................................................................................................................................................... done Filling 3200 nlabel 7223 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003101.label Connecting and filling vertices in path at fillseed 3282 Finding path................................................................................................................................................................................................................................................. done Filling 3282 nlabel 6676 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003201.label Connecting and filling vertices in path at fillseed 4232 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 4232 nlabel 8927 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003301.label Connecting and filling vertices in path at fillseed 3450 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 3450 nlabel 7257 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003401.label Connecting and filling vertices in path at fillseed 3331 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3331 nlabel 8744 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003501.label Connecting and filling vertices in path at fillseed 4231 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4231 nlabel 8103 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003601.label Connecting and filling vertices in path at fillseed 4555 Finding path......................................................................................................................................................................................................................................... done Filling 4555 nlabel 7945 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003701.label Connecting and filling vertices in path at fillseed 4674 Finding path................................................................................................................................................................................. done Filling 4674 nlabel 6244 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003801.label Connecting and filling vertices in path at fillseed 120925 Finding path.................................................................................................................................................. done Filling 120925 nlabel 6591 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003901.label Connecting and filling vertices in path at fillseed 5724 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 5724 nlabel 9567 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004001.label Connecting and filling vertices in path at fillseed 4344 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 4344 nlabel 8216 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004101.label Connecting and filling vertices in path at fillseed 5668 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 5668 nlabel 9406 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004201.label Connecting and filling vertices in path at fillseed 6267 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 6267 nlabel 8107 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004301.label Connecting and filling vertices in path at fillseed 112562 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 112562 nlabel 9972 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004401.label Connecting and filling vertices in path at fillseed 6257 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6257 nlabel 8333 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004501.label Connecting and filling vertices in path at fillseed 5614 Finding path..................................................................................................................................................................................................... done Filling 5614 nlabel 6520 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004601.label Connecting and filling vertices in path at fillseed 6264 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 6264 nlabel 8193 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004701.label Connecting and filling vertices in path at fillseed 5056 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 5056 nlabel 8919 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004801.label Connecting and filling vertices in path at fillseed 5470 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 5470 nlabel 11497 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004901.label Connecting and filling vertices in path at fillseed 5637 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 5637 nlabel 9282 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005001.label Connecting and filling vertices in path at fillseed 8169 Finding path.................................................................................................................................................................................................................................................. done Filling 8169 nlabel 8195 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005101.label Connecting and filling vertices in path at fillseed 7116 Finding path............................................................................................................................................................................................................................................................ done Filling 7116 nlabel 8565 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005201.label Connecting and filling vertices in path at fillseed 6783 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6783 nlabel 9199 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005301.label Connecting and filling vertices in path at fillseed 5156 Finding path..................................................................................................................................................................................................................................... done Filling 5156 nlabel 6063 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005401.label Connecting and filling vertices in path at fillseed 6052 Finding path................................................................................................................................................................................................................................................................................................. done Filling 6052 nlabel 9016 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005501.label Connecting and filling vertices in path at fillseed 9843 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 9843 nlabel 8656 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005601.label Connecting and filling vertices in path at fillseed 7433 Finding path...................................................................................................................................................................................................... done Filling 7433 nlabel 7387 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005701.label Connecting and filling vertices in path at fillseed 6286 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 6286 nlabel 10759 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005801.label Connecting and filling vertices in path at fillseed 8010 Finding path.................................................................................................................................................................................................................................................................... done Filling 8010 nlabel 9406 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005901.label Connecting and filling vertices in path at fillseed 115412 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 115412 nlabel 9811 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006001.label Connecting and filling vertices in path at fillseed 6161 Finding path............................................................................................................................................................................................... done Filling 6161 nlabel 6586 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006101.label Connecting and filling vertices in path at fillseed 8841 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 8841 nlabel 8494 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006201.label Connecting and filling vertices in path at fillseed 8638 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 8638 nlabel 10226 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006301.label Connecting and filling vertices in path at fillseed 7456 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 7456 nlabel 9244 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006401.label Connecting and filling vertices in path at fillseed 11440 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 11440 nlabel 10383 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006501.label Connecting and filling vertices in path at fillseed 111508 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111508 nlabel 9897 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006601.label Connecting and filling vertices in path at fillseed 11979 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 11979 nlabel 9949 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006701.label Connecting and filling vertices in path at fillseed 7518 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 7518 nlabel 8980 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006801.label Connecting and filling vertices in path at fillseed 8510 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 8510 nlabel 9394 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006901.label Connecting and filling vertices in path at fillseed 126634 Finding path.................................................................................................................................................................................................................................................................................... done Filling 126634 nlabel 10495 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007001.label Connecting and filling vertices in path at fillseed 7400 Finding path......................................................................................................................................................................................................................................................................... done Filling 7400 nlabel 7293 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007101.label Connecting and filling vertices in path at fillseed 116120 Finding path....................................................................................................................................................................................................................................................................................... done Filling 116120 nlabel 7006 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007201.label Connecting and filling vertices in path at fillseed 116782 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 116782 nlabel 9292 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007301.label Connecting and filling vertices in path at fillseed 10140 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 10140 nlabel 10536 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007401.label Connecting and filling vertices in path at fillseed 9612 Finding path............................................................................................................................................................................................... done Filling 9612 nlabel 7405 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007501.label Connecting and filling vertices in path at fillseed 8996 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 8996 nlabel 8702 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007601.label Connecting and filling vertices in path at fillseed 10250 Finding path.................................................................................................................................................................................................................................................................................. done Filling 10250 nlabel 9298 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007701.label Connecting and filling vertices in path at fillseed 12712 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 12712 nlabel 9415 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007801.label Connecting and filling vertices in path at fillseed 10413 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 10413 nlabel 7706 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007901.label Connecting and filling vertices in path at fillseed 9736 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 9736 nlabel 8705 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008001.label Connecting and filling vertices in path at fillseed 11091 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 11091 nlabel 9234 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008101.label Connecting and filling vertices in path at fillseed 9562 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 9562 nlabel 9369 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008201.label Connecting and filling vertices in path at fillseed 9631 Finding path.......................................................................................................................................................................................................... done Filling 9631 nlabel 6270 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008301.label Connecting and filling vertices in path at fillseed 12669 Finding path.............................................................................................................................................................................................................................................. done Filling 12669 nlabel 7668 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008401.label Connecting and filling vertices in path at fillseed 14883 Finding path............................................................................................................................................................................................................................................................................................................ done Filling 14883 nlabel 9479 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008501.label Connecting and filling vertices in path at fillseed 119143 Finding path........................................................................................................................................................................................................................................................................ done Filling 119143 nlabel 9564 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008601.label Connecting and filling vertices in path at fillseed 119940 Finding path...................................................................................................................................................................................................... done Filling 119940 nlabel 5977 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008701.label Connecting and filling vertices in path at fillseed 14607 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 14607 nlabel 9101 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008801.label Connecting and filling vertices in path at fillseed 12946 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 12946 nlabel 12109 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008901.label Connecting and filling vertices in path at fillseed 130025 Finding path....................................................................................................................................................................................................................................................................... done Filling 130025 nlabel 8073 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009001.label Connecting and filling vertices in path at fillseed 16026 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 16026 nlabel 10125 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009101.label Connecting and filling vertices in path at fillseed 15461 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 15461 nlabel 9182 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009201.label Connecting and filling vertices in path at fillseed 116394 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 116394 nlabel 9493 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009301.label Connecting and filling vertices in path at fillseed 13420 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 13420 nlabel 11189 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009401.label Connecting and filling vertices in path at fillseed 16983 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 16983 nlabel 8268 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009501.label Connecting and filling vertices in path at fillseed 14066 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 14066 nlabel 9089 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009601.label Connecting and filling vertices in path at fillseed 11817 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 11817 nlabel 9422 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009701.label Connecting and filling vertices in path at fillseed 17612 Finding path............................................................................................................................................................................................................ done Filling 17612 nlabel 7310 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009801.label Connecting and filling vertices in path at fillseed 129244 Finding path................................................................................................................................................................................................. done Filling 129244 nlabel 6930 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009901.label Connecting and filling vertices in path at fillseed 14885 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 14885 nlabel 10151 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010001.label Connecting and filling vertices in path at fillseed 12561 Finding path............................................................................................................................................................................................................................................................................................................................ done Filling 12561 nlabel 9581 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010101.label Connecting and filling vertices in path at fillseed 118970 Finding path................................................................................................................................................................................................................... done Filling 118970 nlabel 7416 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010201.label Connecting and filling vertices in path at fillseed 17042 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17042 nlabel 7727 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010301.label Connecting and filling vertices in path at fillseed 16810 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16810 nlabel 5641 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010401.label Connecting and filling vertices in path at fillseed 14179 Finding path............................................................................................................................................................................................................................................................................................... done Filling 14179 nlabel 9086 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010501.label Connecting and filling vertices in path at fillseed 18432 Finding path................................................................................................................................................................................................................................................. done Filling 18432 nlabel 7350 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010601.label Connecting and filling vertices in path at fillseed 14965 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 14965 nlabel 8913 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010701.label Connecting and filling vertices in path at fillseed 116087 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 116087 nlabel 10465 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010801.label Connecting and filling vertices in path at fillseed 17639 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17639 nlabel 8007 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010901.label Connecting and filling vertices in path at fillseed 17617 Finding path.................................................................................................................................................................................................................... done Filling 17617 nlabel 7031 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011001.label Connecting and filling vertices in path at fillseed 20630 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20630 nlabel 8787 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011101.label Connecting and filling vertices in path at fillseed 116087 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 116087 nlabel 10052 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011201.label Connecting and filling vertices in path at fillseed 17579 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 17579 nlabel 9091 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011301.label Connecting and filling vertices in path at fillseed 18453 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 18453 nlabel 5876 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011401.label Connecting and filling vertices in path at fillseed 20611 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 20611 nlabel 8181 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011501.label Connecting and filling vertices in path at fillseed 17037 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17037 nlabel 8518 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011601.label Connecting and filling vertices in path at fillseed 18360 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 18360 nlabel 9401 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011701.label Connecting and filling vertices in path at fillseed 115782 Finding path.................................................................................................................................................................................................................................................. done Filling 115782 nlabel 7018 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011801.label Connecting and filling vertices in path at fillseed 21520 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21520 nlabel 6750 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011901.label Connecting and filling vertices in path at fillseed 20227 Finding path............................................................................................................................................................................................................................................ done Filling 20227 nlabel 5621 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012001.label Connecting and filling vertices in path at fillseed 22129 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 22129 nlabel 6670 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012101.label Connecting and filling vertices in path at fillseed 21077 Finding path..................................................................................................................................................................... done Filling 21077 nlabel 6738 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012201.label Connecting and filling vertices in path at fillseed 21483 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21483 nlabel 7440 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012301.label Connecting and filling vertices in path at fillseed 17015 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17015 nlabel 8461 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012401.label Connecting and filling vertices in path at fillseed 22126 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 22126 nlabel 4998 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012501.label Connecting and filling vertices in path at fillseed 21069 Finding path............................................................................................................................................................................................................................................................................................. done Filling 21069 nlabel 7544 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012601.label Connecting and filling vertices in path at fillseed 23564 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 23564 nlabel 7971 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012701.label Connecting and filling vertices in path at fillseed 24231 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 24231 nlabel 8879 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012801.label Connecting and filling vertices in path at fillseed 118980 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 118980 nlabel 9132 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012901.label Connecting and filling vertices in path at fillseed 23197 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23197 nlabel 10824 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013001.label Connecting and filling vertices in path at fillseed 23460 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 23460 nlabel 8649 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013101.label Connecting and filling vertices in path at fillseed 111329 Finding path........................................................................................................................................................................................................................................................................................... done Filling 111329 nlabel 9162 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013201.label Connecting and filling vertices in path at fillseed 20911 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20911 nlabel 9752 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013301.label Connecting and filling vertices in path at fillseed 121434 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121434 nlabel 11235 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013401.label Connecting and filling vertices in path at fillseed 26305 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 26305 nlabel 6523 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013501.label Connecting and filling vertices in path at fillseed 22218 Finding path............................................................................................................................................................................................................................................................................................ done Filling 22218 nlabel 6094 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013601.label Connecting and filling vertices in path at fillseed 20912 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 20912 nlabel 9524 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013701.label Connecting and filling vertices in path at fillseed 24359 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 24359 nlabel 11415 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013801.label Connecting and filling vertices in path at fillseed 23531 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23531 nlabel 8013 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013901.label Connecting and filling vertices in path at fillseed 22335 Finding path...................................................................................................................................................................................................... done Filling 22335 nlabel 7360 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014001.label Connecting and filling vertices in path at fillseed 26321 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 26321 nlabel 6061 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014101.label Connecting and filling vertices in path at fillseed 23238 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 23238 nlabel 10373 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014201.label Connecting and filling vertices in path at fillseed 23730 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23730 nlabel 8296 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014301.label Connecting and filling vertices in path at fillseed 23622 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23622 nlabel 9202 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014401.label Connecting and filling vertices in path at fillseed 20978 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 20978 nlabel 9254 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014501.label Connecting and filling vertices in path at fillseed 26362 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 26362 nlabel 10372 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014601.label Connecting and filling vertices in path at fillseed 24718 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24718 nlabel 7497 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014701.label Connecting and filling vertices in path at fillseed 23240 Finding path................................................................................................................................................................................................................................................................ done Filling 23240 nlabel 6205 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014801.label Connecting and filling vertices in path at fillseed 27811 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27811 nlabel 9326 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014901.label Connecting and filling vertices in path at fillseed 26371 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 26371 nlabel 9675 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015001.label Connecting and filling vertices in path at fillseed 109384 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 109384 nlabel 8479 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015101.label Connecting and filling vertices in path at fillseed 24427 Finding path...................................................................................................................................................................................................................................................................... done Filling 24427 nlabel 7340 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015201.label Connecting and filling vertices in path at fillseed 25188 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25188 nlabel 8802 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015301.label Connecting and filling vertices in path at fillseed 28866 Finding path................................................................................................................................................................................................................................................................................... done Filling 28866 nlabel 7167 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015401.label Connecting and filling vertices in path at fillseed 31139 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 31139 nlabel 7435 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015501.label Connecting and filling vertices in path at fillseed 28720 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 28720 nlabel 9047 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015601.label Connecting and filling vertices in path at fillseed 27767 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27767 nlabel 8934 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015701.label Connecting and filling vertices in path at fillseed 26337 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 26337 nlabel 9927 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015801.label Connecting and filling vertices in path at fillseed 29841 Finding path................................................................................................................................................................... done Filling 29841 nlabel 5651 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015901.label Connecting and filling vertices in path at fillseed 31482 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 31482 nlabel 9789 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016001.label Connecting and filling vertices in path at fillseed 32411 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 32411 nlabel 9555 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016101.label Connecting and filling vertices in path at fillseed 29856 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29856 nlabel 9373 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016201.label Connecting and filling vertices in path at fillseed 25505 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 25505 nlabel 9159 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016301.label Connecting and filling vertices in path at fillseed 31281 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 31281 nlabel 8133 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016401.label Connecting and filling vertices in path at fillseed 30123 Finding path......................................................................................................................................................................................... done Filling 30123 nlabel 6793 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016501.label Connecting and filling vertices in path at fillseed 30699 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 30699 nlabel 10250 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016601.label Connecting and filling vertices in path at fillseed 26432 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 26432 nlabel 9572 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016701.label Connecting and filling vertices in path at fillseed 31280 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 31280 nlabel 7440 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016801.label Connecting and filling vertices in path at fillseed 29178 Finding path.......................................................................................................................................................................... done Filling 29178 nlabel 6607 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016901.label Connecting and filling vertices in path at fillseed 29704 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 29704 nlabel 10627 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017001.label Connecting and filling vertices in path at fillseed 31829 Finding path.............................................................................................................................................................................. done Filling 31829 nlabel 7621 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017101.label Connecting and filling vertices in path at fillseed 32238 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 32238 nlabel 6796 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017201.label Connecting and filling vertices in path at fillseed 30089 Finding path................................................................................................................................................................... done Filling 30089 nlabel 6755 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017301.label Connecting and filling vertices in path at fillseed 33847 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33847 nlabel 10536 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017401.label Connecting and filling vertices in path at fillseed 32893 Finding path................................................................................................................................................................................. done Filling 32893 nlabel 7265 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017501.label Connecting and filling vertices in path at fillseed 32258 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 32258 nlabel 6611 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017601.label Connecting and filling vertices in path at fillseed 122603 Finding path.............................................................................................................................................................................................. done Filling 122603 nlabel 6931 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017701.label Connecting and filling vertices in path at fillseed 123769 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 123769 nlabel 10704 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017801.label Connecting and filling vertices in path at fillseed 36683 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 36683 nlabel 9460 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017901.label Connecting and filling vertices in path at fillseed 32344 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 32344 nlabel 8690 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018001.label Connecting and filling vertices in path at fillseed 34328 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 34328 nlabel 7225 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018101.label Connecting and filling vertices in path at fillseed 32916 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 32916 nlabel 8760 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018201.label Connecting and filling vertices in path at fillseed 35823 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 35823 nlabel 9566 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018301.label Connecting and filling vertices in path at fillseed 36549 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 36549 nlabel 6237 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018401.label Connecting and filling vertices in path at fillseed 35313 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 35313 nlabel 7405 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018501.label Connecting and filling vertices in path at fillseed 128915 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 128915 nlabel 9313 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018601.label Connecting and filling vertices in path at fillseed 36670 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 36670 nlabel 9471 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018701.label Connecting and filling vertices in path at fillseed 35203 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 35203 nlabel 8064 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018801.label Connecting and filling vertices in path at fillseed 35899 Finding path.......................................................................................................................................................................... done Filling 35899 nlabel 6892 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018901.label Connecting and filling vertices in path at fillseed 115797 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 115797 nlabel 8119 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019001.label Connecting and filling vertices in path at fillseed 36618 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 36618 nlabel 10034 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019101.label Connecting and filling vertices in path at fillseed 36885 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36885 nlabel 8022 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019201.label Connecting and filling vertices in path at fillseed 36770 Finding path................................................................................................................................................................................ done Filling 36770 nlabel 6790 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019301.label Connecting and filling vertices in path at fillseed 36461 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36461 nlabel 9068 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019401.label Connecting and filling vertices in path at fillseed 37470 Finding path............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37470 nlabel 9959 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019501.label Connecting and filling vertices in path at fillseed 116741 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 116741 nlabel 7598 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019601.label Connecting and filling vertices in path at fillseed 37508 Finding path............................................................................................................................................................................................................................................................. done Filling 37508 nlabel 5794 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019701.label Connecting and filling vertices in path at fillseed 117380 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 117380 nlabel 10133 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019801.label Connecting and filling vertices in path at fillseed 38451 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38451 nlabel 10388 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019901.label Connecting and filling vertices in path at fillseed 37798 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37798 nlabel 8351 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020001.label Connecting and filling vertices in path at fillseed 119291 Finding path............................................................................................................................................................................................................. done Filling 119291 nlabel 6389 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020101.label Connecting and filling vertices in path at fillseed 120892 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 120892 nlabel 9973 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020201.label Connecting and filling vertices in path at fillseed 39488 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39488 nlabel 8724 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020301.label Connecting and filling vertices in path at fillseed 38842 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38842 nlabel 8285 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020401.label Connecting and filling vertices in path at fillseed 119291 Finding path........................................................................................................................................................................................................................................... done Filling 119291 nlabel 6109 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020501.label Connecting and filling vertices in path at fillseed 39162 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39162 nlabel 8498 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020601.label Connecting and filling vertices in path at fillseed 39479 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39479 nlabel 9949 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020701.label Connecting and filling vertices in path at fillseed 40825 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 40825 nlabel 9397 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020801.label Connecting and filling vertices in path at fillseed 41314 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 41314 nlabel 9840 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020901.label Connecting and filling vertices in path at fillseed 127220 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 127220 nlabel 7472 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021001.label Connecting and filling vertices in path at fillseed 39557 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 39557 nlabel 10537 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021101.label Connecting and filling vertices in path at fillseed 113485 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113485 nlabel 9780 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021201.label Connecting and filling vertices in path at fillseed 42606 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 42606 nlabel 6871 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021301.label Connecting and filling vertices in path at fillseed 109534 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 109534 nlabel 8133 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021401.label Connecting and filling vertices in path at fillseed 40626 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40626 nlabel 10377 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021501.label Connecting and filling vertices in path at fillseed 41876 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 41876 nlabel 10198 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021601.label Connecting and filling vertices in path at fillseed 117722 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 117722 nlabel 9386 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021701.label Connecting and filling vertices in path at fillseed 112389 Finding path............................................................................................................................................................................................................................................ done Filling 112389 nlabel 5552 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021801.label Connecting and filling vertices in path at fillseed 42639 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 42639 nlabel 9815 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021901.label Connecting and filling vertices in path at fillseed 41876 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41876 nlabel 8587 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022001.label Connecting and filling vertices in path at fillseed 128594 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 128594 nlabel 5999 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022101.label Connecting and filling vertices in path at fillseed 40350 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 40350 nlabel 9017 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022201.label Connecting and filling vertices in path at fillseed 42708 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42708 nlabel 11566 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022301.label Connecting and filling vertices in path at fillseed 42981 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42981 nlabel 8166 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022401.label Connecting and filling vertices in path at fillseed 111617 Finding path.......................................................................................................................................................................................................... done Filling 111617 nlabel 6196 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022501.label Connecting and filling vertices in path at fillseed 40336 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40336 nlabel 9280 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022601.label Connecting and filling vertices in path at fillseed 127289 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 127289 nlabel 11588 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022701.label Connecting and filling vertices in path at fillseed 43649 Finding path........................................................................................................................................................................................................................................................... done Filling 43649 nlabel 6252 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022801.label Connecting and filling vertices in path at fillseed 107659 Finding path......................................................................................................................................................................................................... done Filling 107659 nlabel 5844 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022901.label Connecting and filling vertices in path at fillseed 46181 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 46181 nlabel 9035 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023001.label Connecting and filling vertices in path at fillseed 44632 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 44632 nlabel 10972 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023101.label Connecting and filling vertices in path at fillseed 43114 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43114 nlabel 8880 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023201.label Connecting and filling vertices in path at fillseed 45586 Finding path................................................................................................................................................................................................ done Filling 45586 nlabel 6214 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023301.label Connecting and filling vertices in path at fillseed 46187 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 46187 nlabel 8450 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023401.label Connecting and filling vertices in path at fillseed 48446 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48446 nlabel 12717 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023501.label Connecting and filling vertices in path at fillseed 49323 Finding path.......................................................................................................................................................................................................................................... done Filling 49323 nlabel 6178 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023601.label Connecting and filling vertices in path at fillseed 47030 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47030 nlabel 10320 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023701.label Connecting and filling vertices in path at fillseed 46989 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46989 nlabel 6334 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023801.label Connecting and filling vertices in path at fillseed 46420 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 46420 nlabel 9686 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023901.label Connecting and filling vertices in path at fillseed 44766 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44766 nlabel 9729 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024001.label Connecting and filling vertices in path at fillseed 47012 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 47012 nlabel 10310 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024101.label Connecting and filling vertices in path at fillseed 48013 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 48013 nlabel 5959 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024201.label Connecting and filling vertices in path at fillseed 47250 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 47250 nlabel 9797 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024301.label Connecting and filling vertices in path at fillseed 52211 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52211 nlabel 11541 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024401.label Connecting and filling vertices in path at fillseed 48845 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48845 nlabel 7805 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024501.label Connecting and filling vertices in path at fillseed 48759 Finding path............................................................................................................................................................................................................................ done Filling 48759 nlabel 7134 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024601.label Connecting and filling vertices in path at fillseed 49330 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 49330 nlabel 8197 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024701.label Connecting and filling vertices in path at fillseed 50318 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50318 nlabel 13055 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024801.label Connecting and filling vertices in path at fillseed 123027 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 123027 nlabel 8584 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024901.label Connecting and filling vertices in path at fillseed 49394 Finding path................................................................................................................................................................... done Filling 49394 nlabel 6676 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025001.label Connecting and filling vertices in path at fillseed 48409 Finding path........................................................................................................................................................................................................................................................................ done Filling 48409 nlabel 6217 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025101.label Connecting and filling vertices in path at fillseed 54098 Finding path..................................................................................................................................................................................................................................................................................................................... done Filling 54098 nlabel 9324 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025201.label Connecting and filling vertices in path at fillseed 44877 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 44877 nlabel 7806 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025301.label Connecting and filling vertices in path at fillseed 50045 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 50045 nlabel 11922 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025401.label Connecting and filling vertices in path at fillseed 49825 Finding path............................................................................................................................................................................................................................................................................................................ done Filling 49825 nlabel 6296 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025501.label Connecting and filling vertices in path at fillseed 50213 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 50213 nlabel 9648 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025601.label Connecting and filling vertices in path at fillseed 50417 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50417 nlabel 11073 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025701.label Connecting and filling vertices in path at fillseed 51745 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 51745 nlabel 12394 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025801.label Connecting and filling vertices in path at fillseed 52623 Finding path................................................................................................................................................................................................................................................................................... done Filling 52623 nlabel 5247 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025901.label Connecting and filling vertices in path at fillseed 50210 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 50210 nlabel 9417 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026001.label Connecting and filling vertices in path at fillseed 54287 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54287 nlabel 10444 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026101.label Connecting and filling vertices in path at fillseed 50707 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 50707 nlabel 9929 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026201.label Connecting and filling vertices in path at fillseed 51531 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 51531 nlabel 6653 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026301.label Connecting and filling vertices in path at fillseed 55986 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 55986 nlabel 8106 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026401.label Connecting and filling vertices in path at fillseed 114471 Finding path...................................................................................................................................... done Filling 114471 nlabel 4584 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026501.label Connecting and filling vertices in path at fillseed 54147 Finding path.................................................................................................................................................................................................................................................................................. done Filling 54147 nlabel 6062 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026601.label Connecting and filling vertices in path at fillseed 52125 Finding path.............................................................................................................................................................................................................................................. done Filling 52125 nlabel 6334 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026701.label Connecting and filling vertices in path at fillseed 53821 Finding path............................................................................................................................................................................................................................................ done Filling 53821 nlabel 8327 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026801.label Connecting and filling vertices in path at fillseed 57138 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 57138 nlabel 9228 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026901.label Connecting and filling vertices in path at fillseed 57210 Finding path................................................................................................................................................................ done Filling 57210 nlabel 5637 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027001.label Connecting and filling vertices in path at fillseed 55160 Finding path........................................................................................................................................................................................................................ done Filling 55160 nlabel 6746 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027101.label Connecting and filling vertices in path at fillseed 120324 Finding path........................................................................................................................................................................... done Filling 120324 nlabel 5731 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027201.label Connecting and filling vertices in path at fillseed 56186 Finding path............................................................................................................................................................................................................................................................................... done Filling 56186 nlabel 7092 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027301.label Connecting and filling vertices in path at fillseed 58091 Finding path........................................................................................................................................................................................................................................................................................... done Filling 58091 nlabel 8967 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027401.label Connecting and filling vertices in path at fillseed 59029 Finding path...................................................................................................................................................... done Filling 59029 nlabel 5423 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027501.label Connecting and filling vertices in path at fillseed 56131 Finding path.................................................................................................................................................................................................. done Filling 56131 nlabel 5538 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027601.label Connecting and filling vertices in path at fillseed 56713 Finding path....................................................................................................................................................................................................................................................................... done Filling 56713 nlabel 5764 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027701.label Connecting and filling vertices in path at fillseed 58050 Finding path.................................................................................................................................................................................................................................................................. done Filling 58050 nlabel 8145 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027801.label Connecting and filling vertices in path at fillseed 59022 Finding path........................................................................................................................................... done Filling 59022 nlabel 4469 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027901.label Connecting and filling vertices in path at fillseed 53465 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 53465 nlabel 8414 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028001.label Connecting and filling vertices in path at fillseed 55015 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55015 nlabel 10448 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028101.label Connecting and filling vertices in path at fillseed 57792 Finding path.................................................................................................................................................................................. done Filling 57792 nlabel 8330 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028201.label Connecting and filling vertices in path at fillseed 58956 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 58956 nlabel 9404 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028301.label Connecting and filling vertices in path at fillseed 56296 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 56296 nlabel 10581 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028401.label Connecting and filling vertices in path at fillseed 62071 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 62071 nlabel 10719 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028501.label Connecting and filling vertices in path at fillseed 57439 Finding path.......................................................................................................................................................................................................................................................................... done Filling 57439 nlabel 5869 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028601.label Connecting and filling vertices in path at fillseed 58023 Finding path..................................................................................................................................................................................................................................................... done Filling 58023 nlabel 7751 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028701.label Connecting and filling vertices in path at fillseed 61671 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 61671 nlabel 8137 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028801.label Connecting and filling vertices in path at fillseed 54369 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 54369 nlabel 7735 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028901.label Connecting and filling vertices in path at fillseed 56810 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56810 nlabel 12538 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029001.label Connecting and filling vertices in path at fillseed 59450 Finding path.................................................................................................................................................................................................................. done Filling 59450 nlabel 6090 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029101.label Connecting and filling vertices in path at fillseed 60732 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 60732 nlabel 8906 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029201.label Connecting and filling vertices in path at fillseed 62633 Finding path............................................................................................................................................. done Filling 62633 nlabel 5966 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029301.label Connecting and filling vertices in path at fillseed 60242 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60242 nlabel 10165 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029401.label Connecting and filling vertices in path at fillseed 58866 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 58866 nlabel 9683 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029501.label Connecting and filling vertices in path at fillseed 115970 Finding path...................................................................................................................................................................................... done Filling 115970 nlabel 7690 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029601.label Connecting and filling vertices in path at fillseed 128361 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 128361 nlabel 9544 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029701.label Connecting and filling vertices in path at fillseed 116169 Finding path.................................................................................................................................................... done Filling 116169 nlabel 5671 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029801.label Connecting and filling vertices in path at fillseed 63206 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 63206 nlabel 12641 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 58299 Finding path.................................................................................................................................................................................................................................................................................. done Filling 58299 nlabel 6193 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 59904 Finding path........................................................................................................................................................................................................................................................................................................... done Filling 59904 nlabel 7370 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030101.label Connecting and filling vertices in path at fillseed 129007 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 129007 nlabel 10582 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030201.label Connecting and filling vertices in path at fillseed 62657 Finding path................................................................................................................................ done Filling 62657 nlabel 5188 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030301.label Connecting and filling vertices in path at fillseed 60470 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60470 nlabel 11606 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030401.label Connecting and filling vertices in path at fillseed 118161 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 118161 nlabel 5100 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030501.label Connecting and filling vertices in path at fillseed 63614 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 63614 nlabel 8432 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030601.label Connecting and filling vertices in path at fillseed 63842 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63842 nlabel 11211 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030701.label Connecting and filling vertices in path at fillseed 64105 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64105 nlabel 9116 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030801.label Connecting and filling vertices in path at fillseed 62754 Finding path................................................................................................................................................................................................................................................................................. done Filling 62754 nlabel 5685 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030901.label Connecting and filling vertices in path at fillseed 63486 Finding path............................................................................................................................................................................................................................... done Filling 63486 nlabel 7446 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031001.label Connecting and filling vertices in path at fillseed 65694 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 65694 nlabel 8278 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031101.label Connecting and filling vertices in path at fillseed 61914 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 61914 nlabel 10078 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031201.label Connecting and filling vertices in path at fillseed 64349 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 64349 nlabel 11661 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031301.label Connecting and filling vertices in path at fillseed 118403 Finding path............................................................................................................................................................................................... done Filling 118403 nlabel 5466 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031401.label Connecting and filling vertices in path at fillseed 65613 Finding path.............................................................................................................................................................................................................................................................................. done Filling 65613 nlabel 7783 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031501.label Connecting and filling vertices in path at fillseed 62765 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 62765 nlabel 10655 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031601.label Connecting and filling vertices in path at fillseed 63656 Finding path............................................................................................................................................ done Filling 63656 nlabel 4908 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031701.label Connecting and filling vertices in path at fillseed 62457 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 62457 nlabel 9965 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031801.label Connecting and filling vertices in path at fillseed 64379 Finding path................................................................................................................................................................................................................... done Filling 64379 nlabel 7972 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031901.label Connecting and filling vertices in path at fillseed 67427 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 67427 nlabel 6720 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032001.label Connecting and filling vertices in path at fillseed 63971 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63971 nlabel 10746 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032101.label Connecting and filling vertices in path at fillseed 117740 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 117740 nlabel 12430 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032201.label Connecting and filling vertices in path at fillseed 109065 Finding path....................................................................................................................................................................................................................................................................................... done Filling 109065 nlabel 4690 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032301.label Connecting and filling vertices in path at fillseed 66541 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 66541 nlabel 8106 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032401.label Connecting and filling vertices in path at fillseed 66615 Finding path........................................................................................................................................ done Filling 66615 nlabel 5272 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032501.label Connecting and filling vertices in path at fillseed 124668 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 124668 nlabel 12355 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032601.label Connecting and filling vertices in path at fillseed 66682 Finding path......................................................................................................................................................................... done Filling 66682 nlabel 5842 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032701.label Connecting and filling vertices in path at fillseed 61730 Finding path.................................................................................................................................................................................................................................................................................. done Filling 61730 nlabel 7812 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032801.label Connecting and filling vertices in path at fillseed 63723 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 63723 nlabel 10586 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032901.label Connecting and filling vertices in path at fillseed 63668 Finding path.................................................................................................................................... done Filling 63668 nlabel 4762 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033001.label Connecting and filling vertices in path at fillseed 63372 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63372 nlabel 9959 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033101.label Connecting and filling vertices in path at fillseed 67953 Finding path................................................................................................................................................................................................................... done Filling 67953 nlabel 8468 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033201.label Connecting and filling vertices in path at fillseed 63720 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 63720 nlabel 8514 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033301.label Connecting and filling vertices in path at fillseed 67523 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 67523 nlabel 10728 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033401.label Connecting and filling vertices in path at fillseed 63519 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63519 nlabel 5391 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033501.label Connecting and filling vertices in path at fillseed 67800 Finding path.................................................................................................................................................................. done Filling 67800 nlabel 5022 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033601.label Connecting and filling vertices in path at fillseed 69870 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 69870 nlabel 7741 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033701.label Connecting and filling vertices in path at fillseed 71560 Finding path........................................................................................................ done Filling 71560 nlabel 3708 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033801.label Connecting and filling vertices in path at fillseed 68637 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68637 nlabel 14024 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033901.label Connecting and filling vertices in path at fillseed 68388 Finding path................................................................................................................................................................................ done Filling 68388 nlabel 5722 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034001.label Connecting and filling vertices in path at fillseed 69988 Finding path...................................................................................................................................................................................................................................................................... done Filling 69988 nlabel 6770 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034101.label Connecting and filling vertices in path at fillseed 69983 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 69983 nlabel 5465 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034201.label Connecting and filling vertices in path at fillseed 66773 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 66773 nlabel 10172 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034301.label Connecting and filling vertices in path at fillseed 66239 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66239 nlabel 15627 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034401.label Connecting and filling vertices in path at fillseed 69495 Finding path................................................................................................................................................................................ done Filling 69495 nlabel 5415 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034501.label Connecting and filling vertices in path at fillseed 126682 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 126682 nlabel 6756 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034601.label Connecting and filling vertices in path at fillseed 72481 Finding path................................................................................................ done Filling 72481 nlabel 3523 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034701.label Connecting and filling vertices in path at fillseed 118544 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 118544 nlabel 7999 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034801.label Connecting and filling vertices in path at fillseed 114963 Finding path..................................................................................................................... done Filling 114963 nlabel 4489 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034901.label Connecting and filling vertices in path at fillseed 71330 Finding path.......................................................................................................................................................................................................................................................................... done Filling 71330 nlabel 8032 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035001.label Connecting and filling vertices in path at fillseed 71576 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 71576 nlabel 9477 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035101.label Connecting and filling vertices in path at fillseed 70960 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 70960 nlabel 10045 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035201.label Connecting and filling vertices in path at fillseed 69575 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 69575 nlabel 16081 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035301.label Connecting and filling vertices in path at fillseed 71061 Finding path............................................................................................................................................................................. done Filling 71061 nlabel 5261 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035401.label Connecting and filling vertices in path at fillseed 71443 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71443 nlabel 8054 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035501.label Connecting and filling vertices in path at fillseed 72481 Finding path................................................................................................ done Filling 72481 nlabel 3464 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035601.label Connecting and filling vertices in path at fillseed 70691 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 70691 nlabel 5593 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035701.label Connecting and filling vertices in path at fillseed 67116 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 67116 nlabel 15474 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035801.label Connecting and filling vertices in path at fillseed 72506 Finding path................................................................................................................................................................................... done Filling 72506 nlabel 5726 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035901.label Connecting and filling vertices in path at fillseed 70801 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 70801 nlabel 7187 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036001.label Connecting and filling vertices in path at fillseed 73401 Finding path......................................................................................................... done Filling 73401 nlabel 4354 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036101.label Connecting and filling vertices in path at fillseed 73235 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 73235 nlabel 12385 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036201.label Connecting and filling vertices in path at fillseed 74685 Finding path...................................................................................................................................................................... done Filling 74685 nlabel 4865 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036301.label Connecting and filling vertices in path at fillseed 74428 Finding path.................................................................................................................................................................................. done Filling 74428 nlabel 5915 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036401.label Connecting and filling vertices in path at fillseed 73463 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 73463 nlabel 10538 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036501.label Connecting and filling vertices in path at fillseed 75355 Finding path........................................................................................................................................... done Filling 75355 nlabel 4462 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036601.label Connecting and filling vertices in path at fillseed 73152 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 73152 nlabel 11532 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036701.label Connecting and filling vertices in path at fillseed 74441 Finding path.................................................................................................................................................................................................. done Filling 74441 nlabel 5741 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036801.label Connecting and filling vertices in path at fillseed 125789 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 125789 nlabel 8678 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036901.label Connecting and filling vertices in path at fillseed 71547 Finding path................................................................................................................ done Filling 71547 nlabel 3696 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037001.label Connecting and filling vertices in path at fillseed 74957 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74957 nlabel 15128 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037101.label Connecting and filling vertices in path at fillseed 74651 Finding path............................................................................................................................................................. done Filling 74651 nlabel 4958 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037201.label Connecting and filling vertices in path at fillseed 72342 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72342 nlabel 8009 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037301.label Connecting and filling vertices in path at fillseed 73481 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 73481 nlabel 11548 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037401.label Connecting and filling vertices in path at fillseed 75330 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75330 nlabel 9776 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037501.label Connecting and filling vertices in path at fillseed 76563 Finding path....................................................................................................................................................................................... done Filling 76563 nlabel 5240 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037601.label Connecting and filling vertices in path at fillseed 112058 Finding path........................................................................................................................................................................................................... done Filling 112058 nlabel 6262 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037701.label Connecting and filling vertices in path at fillseed 73462 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 73462 nlabel 10668 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037801.label Connecting and filling vertices in path at fillseed 75357 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 75357 nlabel 4823 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037901.label Connecting and filling vertices in path at fillseed 78166 Finding path.......................................................................................................................................................................... done Filling 78166 nlabel 5180 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038001.label Connecting and filling vertices in path at fillseed 77039 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77039 nlabel 6554 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038101.label Connecting and filling vertices in path at fillseed 78667 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 78667 nlabel 4187 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038201.label Connecting and filling vertices in path at fillseed 77176 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 77176 nlabel 4127 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038301.label Connecting and filling vertices in path at fillseed 75870 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75870 nlabel 14058 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038401.label Connecting and filling vertices in path at fillseed 116053 Finding path..................................................................................................................................................................................................................................................................................... done Filling 116053 nlabel 4650 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038501.label Connecting and filling vertices in path at fillseed 77952 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77952 nlabel 4808 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038601.label Connecting and filling vertices in path at fillseed 74400 Finding path........................................................................................ done Filling 74400 nlabel 3992 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038701.label Connecting and filling vertices in path at fillseed 110740 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110740 nlabel 16424 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038801.label Connecting and filling vertices in path at fillseed 78298 Finding path................................................................................................................................................. done Filling 78298 nlabel 4689 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038901.label Connecting and filling vertices in path at fillseed 129302 Finding path.................................................................................................................................................................................................................................... done Filling 129302 nlabel 6879 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039001.label Connecting and filling vertices in path at fillseed 75413 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75413 nlabel 3932 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039101.label Connecting and filling vertices in path at fillseed 75151 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 75151 nlabel 12630 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039201.label Connecting and filling vertices in path at fillseed 111956 Finding path.............................................................................................................................................................................................................................. done Filling 111956 nlabel 4766 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039301.label Connecting and filling vertices in path at fillseed 81981 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 81981 nlabel 6270 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039401.label Connecting and filling vertices in path at fillseed 77997 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77997 nlabel 6874 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039501.label Connecting and filling vertices in path at fillseed 80140 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 80140 nlabel 4842 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039601.label Connecting and filling vertices in path at fillseed 112669 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112669 nlabel 14183 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039701.label Connecting and filling vertices in path at fillseed 79618 Finding path.............................................................................................................................................. done Filling 79618 nlabel 5238 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039801.label Connecting and filling vertices in path at fillseed 81990 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81990 nlabel 5706 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039901.label Connecting and filling vertices in path at fillseed 79426 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 79426 nlabel 4766 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040001.label Connecting and filling vertices in path at fillseed 130019 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130019 nlabel 10061 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040101.label Connecting and filling vertices in path at fillseed 76746 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 76746 nlabel 16048 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040201.label Connecting and filling vertices in path at fillseed 114238 Finding path........................................................................................................................................................................ done Filling 114238 nlabel 5148 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040301.label Connecting and filling vertices in path at fillseed 83163 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83163 nlabel 6424 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040401.label Connecting and filling vertices in path at fillseed 80204 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80204 nlabel 10453 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040501.label Connecting and filling vertices in path at fillseed 114495 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114495 nlabel 3734 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040601.label Connecting and filling vertices in path at fillseed 82394 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 82394 nlabel 15712 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040701.label Connecting and filling vertices in path at fillseed 81226 Finding path......................................................................................................................... done Filling 81226 nlabel 4323 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040801.label Connecting and filling vertices in path at fillseed 78715 Finding path.................................................................................................................................................................................................................................................. done Filling 78715 nlabel 6752 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040901.label Connecting and filling vertices in path at fillseed 82088 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 82088 nlabel 3915 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041001.label Connecting and filling vertices in path at fillseed 77437 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 77437 nlabel 9187 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041101.label Connecting and filling vertices in path at fillseed 80553 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80553 nlabel 13761 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041201.label Connecting and filling vertices in path at fillseed 81917 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 81917 nlabel 4796 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041301.label Connecting and filling vertices in path at fillseed 80147 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 80147 nlabel 4972 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041401.label Connecting and filling vertices in path at fillseed 80839 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80839 nlabel 4644 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041501.label Connecting and filling vertices in path at fillseed 80015 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80015 nlabel 13469 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041601.label Connecting and filling vertices in path at fillseed 82159 Finding path........................................................................................................................... done Filling 82159 nlabel 4959 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041701.label Connecting and filling vertices in path at fillseed 83774 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83774 nlabel 4944 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041801.label Connecting and filling vertices in path at fillseed 80148 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80148 nlabel 5228 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041901.label Connecting and filling vertices in path at fillseed 78839 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 78839 nlabel 9186 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042001.label Connecting and filling vertices in path at fillseed 82347 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 82347 nlabel 13508 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042101.label Connecting and filling vertices in path at fillseed 82919 Finding path...................................................................................................................................................... done Filling 82919 nlabel 5186 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042201.label Connecting and filling vertices in path at fillseed 83879 Finding path...................................................................................................................................................................................................... done Filling 83879 nlabel 6099 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042301.label Connecting and filling vertices in path at fillseed 82670 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82670 nlabel 10110 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042401.label Connecting and filling vertices in path at fillseed 80067 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80067 nlabel 9496 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042501.label Connecting and filling vertices in path at fillseed 83419 Finding path..................................................................................................................................... done Filling 83419 nlabel 4823 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042601.label Connecting and filling vertices in path at fillseed 84492 Finding path.................................................................................................................................................................... done Filling 84492 nlabel 4863 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042701.label Connecting and filling vertices in path at fillseed 82669 Finding path......................................................................................................................................................................................................................................................... done Filling 82669 nlabel 8701 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042801.label Connecting and filling vertices in path at fillseed 114168 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114168 nlabel 8800 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042901.label Connecting and filling vertices in path at fillseed 80643 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 80643 nlabel 13198 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043001.label Connecting and filling vertices in path at fillseed 108239 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 108239 nlabel 4946 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043101.label Connecting and filling vertices in path at fillseed 128476 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 128476 nlabel 8600 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043201.label Connecting and filling vertices in path at fillseed 80825 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 80825 nlabel 6414 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043301.label Connecting and filling vertices in path at fillseed 81411 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81411 nlabel 12630 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043401.label Connecting and filling vertices in path at fillseed 84658 Finding path.......................................................................................................................................... done Filling 84658 nlabel 4421 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043501.label Connecting and filling vertices in path at fillseed 127151 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 127151 nlabel 5801 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043601.label Connecting and filling vertices in path at fillseed 83867 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 83867 nlabel 4333 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043701.label Connecting and filling vertices in path at fillseed 82000 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 82000 nlabel 11883 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043801.label Connecting and filling vertices in path at fillseed 81240 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 81240 nlabel 12612 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043901.label Connecting and filling vertices in path at fillseed 86451 Finding path................................................................................................................................................ done Filling 86451 nlabel 5333 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044001.label Connecting and filling vertices in path at fillseed 87246 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 87246 nlabel 5889 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044101.label Connecting and filling vertices in path at fillseed 83370 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83370 nlabel 10754 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044201.label Connecting and filling vertices in path at fillseed 88397 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 88397 nlabel 12837 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044301.label Connecting and filling vertices in path at fillseed 85810 Finding path.................................................................................................................................. done Filling 85810 nlabel 5010 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044401.label Connecting and filling vertices in path at fillseed 127934 Finding path........................................................................................................................................................................ done Filling 127934 nlabel 5779 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044501.label Connecting and filling vertices in path at fillseed 87317 Finding path................................................................................................................................................................................................................................................................... done Filling 87317 nlabel 10503 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044601.label Connecting and filling vertices in path at fillseed 86322 Finding path........................................................................................................................................................................................................................................................................................................................................................................... done Filling 86322 nlabel 9226 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044701.label Connecting and filling vertices in path at fillseed 85672 Finding path............................................................................................................................................................................................................................................ done Filling 85672 nlabel 4719 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044801.label Connecting and filling vertices in path at fillseed 87235 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 87235 nlabel 5123 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044901.label Connecting and filling vertices in path at fillseed 85080 Finding path....................................................................................................................................................................................................................................................................... done Filling 85080 nlabel 8800 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045001.label Connecting and filling vertices in path at fillseed 83159 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83159 nlabel 12393 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045101.label Connecting and filling vertices in path at fillseed 85357 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 85357 nlabel 12112 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045201.label Connecting and filling vertices in path at fillseed 111924 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 111924 nlabel 5172 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045301.label Connecting and filling vertices in path at fillseed 122350 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 122350 nlabel 6080 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045401.label Connecting and filling vertices in path at fillseed 89851 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89851 nlabel 10771 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045501.label Connecting and filling vertices in path at fillseed 85395 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 85395 nlabel 14501 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045601.label Connecting and filling vertices in path at fillseed 128025 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 128025 nlabel 5441 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045701.label Connecting and filling vertices in path at fillseed 86192 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 86192 nlabel 8119 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045801.label Connecting and filling vertices in path at fillseed 86808 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 86808 nlabel 9328 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045901.label Connecting and filling vertices in path at fillseed 85934 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 85934 nlabel 12290 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046001.label Connecting and filling vertices in path at fillseed 87713 Finding path......................................................................................................................................................................................................................................................................................... done Filling 87713 nlabel 5133 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046101.label Connecting and filling vertices in path at fillseed 84458 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 84458 nlabel 6417 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046201.label Connecting and filling vertices in path at fillseed 86807 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 86807 nlabel 9831 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046301.label Connecting and filling vertices in path at fillseed 90970 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 90970 nlabel 11708 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046401.label Connecting and filling vertices in path at fillseed 122422 Finding path............................................................................................................................................. done Filling 122422 nlabel 5110 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046501.label Connecting and filling vertices in path at fillseed 89244 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89244 nlabel 5999 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046601.label Connecting and filling vertices in path at fillseed 125026 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 125026 nlabel 9663 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046701.label Connecting and filling vertices in path at fillseed 91116 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 91116 nlabel 10364 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046801.label Connecting and filling vertices in path at fillseed 119991 Finding path.................................................................................................................................................................................... done Filling 119991 nlabel 5714 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046901.label Connecting and filling vertices in path at fillseed 90607 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 90607 nlabel 6700 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047001.label Connecting and filling vertices in path at fillseed 86177 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 86177 nlabel 5578 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047101.label Connecting and filling vertices in path at fillseed 92409 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92409 nlabel 9187 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047201.label Connecting and filling vertices in path at fillseed 89272 Finding path...................................................................................................................................................................................................... done Filling 89272 nlabel 4424 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047301.label Connecting and filling vertices in path at fillseed 88567 Finding path.................................................................................................................................................................. done Filling 88567 nlabel 5715 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047401.label Connecting and filling vertices in path at fillseed 89298 Finding path..................................................................................................................................................................................................................................................................................... done Filling 89298 nlabel 9165 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047501.label Connecting and filling vertices in path at fillseed 86680 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86680 nlabel 6589 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047601.label Connecting and filling vertices in path at fillseed 89703 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89703 nlabel 10663 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047701.label Connecting and filling vertices in path at fillseed 109806 Finding path................................................................................................................................................. done Filling 109806 nlabel 5213 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047801.label Connecting and filling vertices in path at fillseed 92479 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92479 nlabel 6152 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047901.label Connecting and filling vertices in path at fillseed 86160 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 86160 nlabel 6975 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048001.label Connecting and filling vertices in path at fillseed 90700 Finding path.......................................................................................................................................................................................................................... done Filling 90700 nlabel 10489 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048101.label Connecting and filling vertices in path at fillseed 92949 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92949 nlabel 10355 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048201.label Connecting and filling vertices in path at fillseed 92411 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92411 nlabel 5564 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048301.label Connecting and filling vertices in path at fillseed 90619 Finding path............................................................................................................................................................................................................................................. done Filling 90619 nlabel 6207 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048401.label Connecting and filling vertices in path at fillseed 90111 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 90111 nlabel 9182 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048501.label Connecting and filling vertices in path at fillseed 92048 Finding path.............................................................................................................. done Filling 92048 nlabel 5554 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048601.label Connecting and filling vertices in path at fillseed 93804 Finding path.......................................................................................................................................................................................................................... done Filling 93804 nlabel 5473 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048701.label Connecting and filling vertices in path at fillseed 92473 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92473 nlabel 5544 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048801.label Connecting and filling vertices in path at fillseed 107759 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107759 nlabel 9879 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048901.label Connecting and filling vertices in path at fillseed 93804 Finding path.......................................................................................................................................................................................................... done Filling 93804 nlabel 5258 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049001.label Connecting and filling vertices in path at fillseed 90624 Finding path................................................................................................................................................. done Filling 90624 nlabel 5842 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049101.label Connecting and filling vertices in path at fillseed 93076 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93076 nlabel 10133 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049201.label Connecting and filling vertices in path at fillseed 94113 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 94113 nlabel 10444 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049301.label Connecting and filling vertices in path at fillseed 92236 Finding path.......................................................................................................................................... done Filling 92236 nlabel 6404 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049401.label Connecting and filling vertices in path at fillseed 94366 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 94366 nlabel 6221 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049501.label Connecting and filling vertices in path at fillseed 91411 Finding path............................................................................................................................................................................................................................................ done Filling 91411 nlabel 9385 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049601.label Connecting and filling vertices in path at fillseed 94114 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 94114 nlabel 9902 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049701.label Connecting and filling vertices in path at fillseed 93648 Finding path........................................................................................................................................................... done Filling 93648 nlabel 5764 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049801.label Connecting and filling vertices in path at fillseed 93164 Finding path.................................................................................................................................................................................................................................................. done Filling 93164 nlabel 7153 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049901.label Connecting and filling vertices in path at fillseed 94572 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 94572 nlabel 7631 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050001.label Connecting and filling vertices in path at fillseed 95620 Finding path.......................................................................................................................... done Filling 95620 nlabel 5249 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050101.label Connecting and filling vertices in path at fillseed 115156 Finding path.......................................................................................................................................................... done Filling 115156 nlabel 5446 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050201.label Connecting and filling vertices in path at fillseed 91306 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 91306 nlabel 7937 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050301.label Connecting and filling vertices in path at fillseed 95205 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 95205 nlabel 7285 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050401.label Connecting and filling vertices in path at fillseed 96246 Finding path........................................................................................................................ done Filling 96246 nlabel 4473 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050501.label Connecting and filling vertices in path at fillseed 94969 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 94969 nlabel 5253 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050601.label Connecting and filling vertices in path at fillseed 94924 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 94924 nlabel 6424 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050701.label Connecting and filling vertices in path at fillseed 97206 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97206 nlabel 8065 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050801.label Connecting and filling vertices in path at fillseed 123992 Finding path........................................................................................................................ done Filling 123992 nlabel 5603 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050901.label Connecting and filling vertices in path at fillseed 122221 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 122221 nlabel 6263 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051001.label Connecting and filling vertices in path at fillseed 94561 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 94561 nlabel 8697 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051101.label Connecting and filling vertices in path at fillseed 96276 Finding path.......................................................................................................................................... done Filling 96276 nlabel 5303 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051201.label Connecting and filling vertices in path at fillseed 128797 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 128797 nlabel 5715 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051301.label Connecting and filling vertices in path at fillseed 93848 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 93848 nlabel 9257 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051401.label Connecting and filling vertices in path at fillseed 118845 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 118845 nlabel 9873 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051501.label Connecting and filling vertices in path at fillseed 96739 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 96739 nlabel 5037 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051601.label Connecting and filling vertices in path at fillseed 96149 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 96149 nlabel 5526 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051701.label Connecting and filling vertices in path at fillseed 97217 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97217 nlabel 7682 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051801.label Connecting and filling vertices in path at fillseed 98921 Finding path................................................................................................................................. done Filling 98921 nlabel 5275 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051901.label Connecting and filling vertices in path at fillseed 108936 Finding path.......................................................................................................................................................... done Filling 108936 nlabel 5419 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052001.label Connecting and filling vertices in path at fillseed 95059 Finding path.................................................................................................................................................................................................................................. done Filling 95059 nlabel 7469 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052101.label Connecting and filling vertices in path at fillseed 129024 Finding path..................................................................................................................................................................................................................................................................... done Filling 129024 nlabel 6807 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052201.label Connecting and filling vertices in path at fillseed 95258 Finding path.............................................................................................................. done Filling 95258 nlabel 5458 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052301.label Connecting and filling vertices in path at fillseed 97795 Finding path............................................................................................................................................................................. done Filling 97795 nlabel 5889 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052401.label Connecting and filling vertices in path at fillseed 98410 Finding path............................................................................................................................................................................................................................................... done Filling 98410 nlabel 8150 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052501.label Connecting and filling vertices in path at fillseed 97642 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 97642 nlabel 10069 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052601.label Connecting and filling vertices in path at fillseed 98203 Finding path.............................................................................................................................................................. done Filling 98203 nlabel 5578 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052701.label Connecting and filling vertices in path at fillseed 96775 Finding path............................................................................................................................................... done Filling 96775 nlabel 6265 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052801.label Connecting and filling vertices in path at fillseed 98032 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 98032 nlabel 6041 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052901.label Connecting and filling vertices in path at fillseed 97017 Finding path.............................................................................................................. done Filling 97017 nlabel 5371 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053001.label Connecting and filling vertices in path at fillseed 98815 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98815 nlabel 5901 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053101.label Connecting and filling vertices in path at fillseed 125059 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 125059 nlabel 5236 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053201.label Connecting and filling vertices in path at fillseed 100035 Finding path........................................................................................................................................................................................................................ done Filling 100035 nlabel 5443 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053301.label Connecting and filling vertices in path at fillseed 98824 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98824 nlabel 5843 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053401.label Connecting and filling vertices in path at fillseed 114141 Finding path.......................................................................................................................................................................................................................................................... done Filling 114141 nlabel 8079 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053501.label Connecting and filling vertices in path at fillseed 98841 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 98841 nlabel 4478 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053601.label Connecting and filling vertices in path at fillseed 98846 Finding path............................................................................................................................................................................................................... done Filling 98846 nlabel 5458 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053701.label Connecting and filling vertices in path at fillseed 97859 Finding path.................................................................................................................................................................................................................................................................................... done Filling 97859 nlabel 7408 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053801.label Connecting and filling vertices in path at fillseed 99161 Finding path...................................................................................................................................................................................................................................................................... done Filling 99161 nlabel 5370 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053901.label Connecting and filling vertices in path at fillseed 98066 Finding path................................................................................................................ done Filling 98066 nlabel 5423 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054001.label Connecting and filling vertices in path at fillseed 99373 Finding path............................................................................................................................................................................................ done Filling 99373 nlabel 6402 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054101.label Connecting and filling vertices in path at fillseed 99455 Finding path.......................................................................................................................................................................................................................................................... done Filling 99455 nlabel 8033 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054201.label Connecting and filling vertices in path at fillseed 108107 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108107 nlabel 5586 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054301.label Connecting and filling vertices in path at fillseed 121467 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 121467 nlabel 4013 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054401.label Connecting and filling vertices in path at fillseed 100856 Finding path......................................................................................................................................................................... done Filling 100856 nlabel 6329 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054501.label Connecting and filling vertices in path at fillseed 113134 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113134 nlabel 4315 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054601.label Connecting and filling vertices in path at fillseed 99107 Finding path.......................................................................................................................... done Filling 99107 nlabel 5418 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054701.label Connecting and filling vertices in path at fillseed 102182 Finding path................................................................................................................ done Filling 102182 nlabel 4006 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054801.label Connecting and filling vertices in path at fillseed 99961 Finding path................................................................................................................................................................................................................................................ done Filling 99961 nlabel 8102 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054901.label Connecting and filling vertices in path at fillseed 102223 Finding path.................................................................................................................................................................................... done Filling 102223 nlabel 4452 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055001.label Connecting and filling vertices in path at fillseed 102185 Finding path.................................................................................................................... done Filling 102185 nlabel 3053 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055101.label Connecting and filling vertices in path at fillseed 99971 Finding path................................................................................................................................................................................................................................ done Filling 99971 nlabel 7732 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055201.label Connecting and filling vertices in path at fillseed 101119 Finding path...................................................................................................................................................................................................... done Filling 101119 nlabel 5780 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055301.label Connecting and filling vertices in path at fillseed 101293 Finding path............................................................................................................................................................................................ done Filling 101293 nlabel 4026 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055401.label Connecting and filling vertices in path at fillseed 101327 Finding path.............................................................................................................................................................. done Filling 101327 nlabel 6397 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055501.label Connecting and filling vertices in path at fillseed 129531 Finding path........................................................................................................................................................................................................................................... done Filling 129531 nlabel 7466 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055601.label Connecting and filling vertices in path at fillseed 102834 Finding path............................................................................................................. done Filling 102834 nlabel 5233 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055701.label Connecting and filling vertices in path at fillseed 124793 Finding path........................................................................................................................... done Filling 124793 nlabel 4788 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055801.label Connecting and filling vertices in path at fillseed 126733 Finding path....................................................................................................................................................................................................................... done Filling 126733 nlabel 8135 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055901.label Connecting and filling vertices in path at fillseed 129860 Finding path................................................................................................................................................................................................... done Filling 129860 nlabel 4441 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056001.label Connecting and filling vertices in path at fillseed 102604 Finding path......................................................................................................................................................... done Filling 102604 nlabel 3476 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056101.label Connecting and filling vertices in path at fillseed 103362 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103362 nlabel 5542 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056201.label Connecting and filling vertices in path at fillseed 100548 Finding path..................................................................................................................................................................................................................... done Filling 100548 nlabel 6195 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056301.label Connecting and filling vertices in path at fillseed 103214 Finding path.................................................................................................................................. done Filling 103214 nlabel 5285 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056401.label Connecting and filling vertices in path at fillseed 103398 Finding path............................................................................................................................ done Filling 103398 nlabel 4783 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056501.label Connecting and filling vertices in path at fillseed 120565 Finding path........................................................................................................................................................................................................................................... done Filling 120565 nlabel 8071 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056601.label Connecting and filling vertices in path at fillseed 112099 Finding path....................................................................................................................................................................... done Filling 112099 nlabel 3701 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056701.label Connecting and filling vertices in path at fillseed 103013 Finding path................................................................................................................ done Filling 103013 nlabel 3034 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056801.label Connecting and filling vertices in path at fillseed 101348 Finding path......................................................................................................................................................................................................................... done Filling 101348 nlabel 6389 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056901.label Connecting and filling vertices in path at fillseed 103225 Finding path..................................................................................................................................................................................................................................................................... done Filling 103225 nlabel 6559 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057001.label Connecting and filling vertices in path at fillseed 104962 Finding path...................................................................................................................................... done Filling 104962 nlabel 5029 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057101.label Connecting and filling vertices in path at fillseed 113804 Finding path........................................................................................................................................................................................... done Filling 113804 nlabel 5684 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057201.label Connecting and filling vertices in path at fillseed 102686 Finding path.............................................................................................................................................................................................................................................. done Filling 102686 nlabel 7240 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057301.label Connecting and filling vertices in path at fillseed 104177 Finding path............................................................................................................................... done Filling 104177 nlabel 4698 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057401.label Connecting and filling vertices in path at fillseed 126611 Finding path............................................................................................................................................................................... done Filling 126611 nlabel 4385 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057501.label Connecting and filling vertices in path at fillseed 105338 Finding path...................................................................................................................... done Filling 105338 nlabel 5014 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057601.label Connecting and filling vertices in path at fillseed 103323 Finding path..................................................................................................................................... done Filling 103323 nlabel 5597 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057701.label Connecting and filling vertices in path at fillseed 105079 Finding path......................................................................................................................................... done Filling 105079 nlabel 3645 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057801.label Connecting and filling vertices in path at fillseed 105060 Finding path.......................................................................................................................... done Filling 105060 nlabel 4331 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057901.label Connecting and filling vertices in path at fillseed 104358 Finding path........................................................................................................................................ done Filling 104358 nlabel 5214 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058001.label Connecting and filling vertices in path at fillseed 103792 Finding path..................................................................................................................................................................................................................... done Filling 103792 nlabel 4656 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058101.label Connecting and filling vertices in path at fillseed 104228 Finding path............................................................................................................................................................... done Filling 104228 nlabel 6474 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058201.label Connecting and filling vertices in path at fillseed 104392 Finding path......................................................................................................... done Filling 104392 nlabel 5053 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058301.label Connecting and filling vertices in path at fillseed 104154 Finding path.................................................................................................................................. done Filling 104154 nlabel 5082 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058401.label Connecting and filling vertices in path at fillseed 110823 Finding path....................................................................................................................................................... done Filling 110823 nlabel 4562 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058501.label Connecting and filling vertices in path at fillseed 104817 Finding path.................................................................................................................................................................................................... done Filling 104817 nlabel 4371 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058601.label Connecting and filling vertices in path at fillseed 105382 Finding path...................................................................................................... done Filling 105382 nlabel 3089 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058701.label Connecting and filling vertices in path at fillseed 115139 Finding path.......................................................................................................... done Filling 115139 nlabel 5267 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058801.label Connecting and filling vertices in path at fillseed 106076 Finding path......................................................................................................................................................... done Filling 106076 nlabel 4366 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058901.label Connecting and filling vertices in path at fillseed 105379 Finding path................................................................................................................................ done Filling 105379 nlabel 3454 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059001.label Connecting and filling vertices in path at fillseed 105043 Finding path........................................................................................................ done Filling 105043 nlabel 5254 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059101.label Connecting and filling vertices in path at fillseed 106364 Finding path........................................................................................................................................... done Filling 106364 nlabel 4308 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059201.label Connecting and filling vertices in path at fillseed 105385 Finding path.......................................................................................................................................................... done Filling 105385 nlabel 4953 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059301.label Connecting and filling vertices in path at fillseed 105179 Finding path......................................................................................................................................... done Filling 105179 nlabel 5610 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059401.label Connecting and filling vertices in path at fillseed 118883 Finding path......................................................................................................................................... done Filling 118883 nlabel 4198 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059501.label Connecting and filling vertices in path at fillseed 106214 Finding path....................................................................................................................................... done Filling 106214 nlabel 4139 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059601.label Connecting and filling vertices in path at fillseed 105303 Finding path............................................................................................................... done Filling 105303 nlabel 5486 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059701.label Connecting and filling vertices in path at fillseed 106209 Finding path................................................................................................ done Filling 106209 nlabel 2923 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059801.label Connecting and filling vertices in path at fillseed 105441 Finding path............................................................................................................................. done Filling 105441 nlabel 5579 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059901.label Connecting and filling vertices in path at fillseed 104686 Finding path............................................................................................................ done Filling 104686 nlabel 5371 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060001.label Connecting and filling vertices in path at fillseed 105958 Finding path................................................................................................................................................ done Filling 105958 nlabel 4537 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060101.label Connecting and filling vertices in path at fillseed 106320 Finding path...................................................................................................................... done Filling 106320 nlabel 4907 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060201.label Connecting and filling vertices in path at fillseed 106427 Finding path........................................................................................................... done Filling 106427 nlabel 3163 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060301.label Connecting and filling vertices in path at fillseed 106207 Finding path..................................................................................................................... done Filling 106207 nlabel 4285 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060401.label Connecting and filling vertices in path at fillseed 106451 Finding path......................................................................................................... done Filling 106451 nlabel 3980 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060501.label Connecting and filling vertices in path at fillseed 106279 Finding path..................................................................................................................... done Filling 106279 nlabel 5293 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060601.label Connecting and filling vertices in path at fillseed 106821 Finding path.................................................................................................................................................................................. done Filling 106821 nlabel 4093 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060701.label Connecting and filling vertices in path at fillseed 106469 Finding path............................................................................................................................................................................. done Filling 106469 nlabel 6129 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060801.label Connecting and filling vertices in path at fillseed 114827 Finding path............................................................................................. done Filling 114827 nlabel 4742 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060901.label Connecting and filling vertices in path at fillseed 106467 Finding path................................................................................................................................................................................................................................. done Filling 106467 nlabel 4499 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061001.label Connecting and filling vertices in path at fillseed 106800 Finding path.............................................................................................................................. done Filling 106800 nlabel 4920 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061101.label Connecting and filling vertices in path at fillseed 106892 Finding path................................................................................................................................................................ done Filling 106892 nlabel 3689 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061201.label Connecting and filling vertices in path at fillseed 106786 Finding path........................................................................................................................................................................................... done Filling 106786 nlabel 5420 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061301.label Connecting and filling vertices in path at fillseed 106870 Finding path............................................................................................................................................. done Filling 106870 nlabel 5002 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061401.label Connecting and filling vertices in path at fillseed 106753 Finding path............................................................................................................. done Filling 106753 nlabel 3189 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061501.label Connecting and filling vertices in path at fillseed 106899 Finding path............................................................................................................................................................................... done Filling 106899 nlabel 4645 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061601.label Connecting and filling vertices in path at fillseed 106749 Finding path............................................................................................. done Filling 106749 nlabel 3170 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061701.label Connecting and filling vertices in path at fillseed 106899 Finding path................................................................................................................... done Filling 106899 nlabel 4312 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061801.label Connecting and filling vertices in path at fillseed 125907 Finding path............................................................................................................................ done Filling 125907 nlabel 3781 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061901.label Connecting and filling vertices in path at fillseed 106999 Finding path............................................................................................................ done Filling 106999 nlabel 3627 Saving label file /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062001.label ================= compute_lgi('lh.pial','lh.pial-outer-smoothed','/scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc',100,25,'/scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial'); exit ================= MATLAB is selecting SOFTWARE rendering. < M A T L A B (R) > Copyright 1984-2024 The MathWorks, Inc. R2024b (24.2.0.2712019) 64-bit (glnxa64) August 22, 2024 For online documentation, see https://www.mathworks.com/support For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.04 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 124004 face 10000 / 124004 face 15000 / 124004 face 20000 / 124004 face 25000 / 124004 face 30000 / 124004 face 35000 / 124004 face 40000 / 124004 face 45000 / 124004 face 50000 / 124004 face 55000 / 124004 face 60000 / 124004 face 65000 / 124004 face 70000 / 124004 face 75000 / 124004 face 80000 / 124004 face 85000 / 124004 face 90000 / 124004 face 95000 / 124004 face 100000 / 124004 face 105000 / 124004 face 110000 / 124004 face 115000 / 124004 face 120000 / 124004 reading normals info ... mesh_outer = struct with fields: vertices: [62004x3 double] faces: [124004x3 double] facesOfVertex: [62004x1 struct] vertexNormal: [62004x3 double] preparing pial mesh structure ... face 5000 / 260318 face 10000 / 260318 face 15000 / 260318 face 20000 / 260318 face 25000 / 260318 face 30000 / 260318 face 35000 / 260318 face 40000 / 260318 face 45000 / 260318 face 50000 / 260318 face 55000 / 260318 face 60000 / 260318 face 65000 / 260318 face 70000 / 260318 face 75000 / 260318 face 80000 / 260318 face 85000 / 260318 face 90000 / 260318 face 95000 / 260318 face 100000 / 260318 face 105000 / 260318 face 110000 / 260318 face 115000 / 260318 face 120000 / 260318 face 125000 / 260318 face 130000 / 260318 face 135000 / 260318 face 140000 / 260318 face 145000 / 260318 face 150000 / 260318 face 155000 / 260318 face 160000 / 260318 face 165000 / 260318 face 170000 / 260318 face 175000 / 260318 face 180000 / 260318 face 185000 / 260318 face 190000 / 260318 face 195000 / 260318 face 200000 / 260318 face 205000 / 260318 face 210000 / 260318 face 215000 / 260318 face 220000 / 260318 face 225000 / 260318 face 230000 / 260318 face 235000 / 260318 face 240000 / 260318 face 245000 / 260318 face 250000 / 260318 face 255000 / 260318 face 260000 / 260318 mesh_total = struct with fields: vertices: [130161x3 double] faces: [260318x3 double] facesOfVertex: [130161x1 struct] ...searching for mesh edges...done (49.26 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 2.3497 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 3.0313 lGI for vertex number 201 of the outer mesh is 2.7928 lGI for vertex number 301 of the outer mesh is 2.6506 lGI for vertex number 401 of the outer mesh is 3.0425 lGI for vertex number 501 of the outer mesh is 2.5989 lGI for vertex number 601 of the outer mesh is 2.4044 lGI for vertex number 701 of the outer mesh is 2.542 lGI for vertex number 801 of the outer mesh is 3.3659 lGI for vertex number 901 of the outer mesh is 2.6151 lGI for vertex number 1001 of the outer mesh is 3.2542 lGI for vertex number 1101 of the outer mesh is 2.7103 lGI for vertex number 1201 of the outer mesh is 3.3638 lGI for vertex number 1301 of the outer mesh is 2.6572 lGI for vertex number 1401 of the outer mesh is 3.5185 lGI for vertex number 1501 of the outer mesh is 2.449 lGI for vertex number 1601 of the outer mesh is 2.7355 lGI for vertex number 1701 of the outer mesh is 3.3941 lGI for vertex number 1801 of the outer mesh is 2.4748 lGI for vertex number 1901 of the outer mesh is 2.4144 lGI for vertex number 2001 of the outer mesh is 2.8026 lGI for vertex number 2101 of the outer mesh is 2.5708 lGI for vertex number 2201 of the outer mesh is 2.6587 lGI for vertex number 2301 of the outer mesh is 3.3781 lGI for vertex number 2401 of the outer mesh is 3.8316 lGI for vertex number 2501 of the outer mesh is 3.3662 lGI for vertex number 2601 of the outer mesh is 2.888 lGI for vertex number 2701 of the outer mesh is 2.5338 lGI for vertex number 2801 of the outer mesh is 2.7491 lGI for vertex number 2901 of the outer mesh is 2.4844 lGI for vertex number 3001 of the outer mesh is 3.5616 lGI for vertex number 3101 of the outer mesh is 2.6609 lGI for vertex number 3201 of the outer mesh is 2.6688 lGI for vertex number 3301 of the outer mesh is 3.6352 lGI for vertex number 3401 of the outer mesh is 2.9728 lGI for vertex number 3501 of the outer mesh is 3.454 lGI for vertex number 3601 of the outer mesh is 3.3836 lGI for vertex number 3701 of the outer mesh is 3.0487 lGI for vertex number 3801 of the outer mesh is 2.6188 lGI for vertex number 3901 of the outer mesh is 2.5272 lGI for vertex number 4001 of the outer mesh is 3.88 lGI for vertex number 4101 of the outer mesh is 3.2217 lGI for vertex number 4201 of the outer mesh is 3.6676 lGI for vertex number 4301 of the outer mesh is 3.3928 lGI for vertex number 4401 of the outer mesh is 3.5401 lGI for vertex number 4501 of the outer mesh is 3.3829 lGI for vertex number 4601 of the outer mesh is 2.6298 lGI for vertex number 4701 of the outer mesh is 3.4502 lGI for vertex number 4801 of the outer mesh is 3.2768 lGI for vertex number 4901 of the outer mesh is 3.7815 lGI for vertex number 5001 of the outer mesh is 3.7952 lGI for vertex number 5101 of the outer mesh is 3.1886 lGI for vertex number 5201 of the outer mesh is 3.4318 lGI for vertex number 5301 of the outer mesh is 3.8135 lGI for vertex number 5401 of the outer mesh is 2.4356 lGI for vertex number 5501 of the outer mesh is 3.3862 lGI for vertex number 5601 of the outer mesh is 3.4326 lGI for vertex number 5701 of the outer mesh is 2.7976 lGI for vertex number 5801 of the outer mesh is 4.2629 lGI for vertex number 5901 of the outer mesh is 3.5255 lGI for vertex number 6001 of the outer mesh is 3.6544 lGI for vertex number 6101 of the outer mesh is 2.4641 lGI for vertex number 6201 of the outer mesh is 3.2787 lGI for vertex number 6301 of the outer mesh is 3.5026 lGI for vertex number 6401 of the outer mesh is 3.7367 lGI for vertex number 6501 of the outer mesh is 4.0871 lGI for vertex number 6601 of the outer mesh is 4.0158 lGI for vertex number 6701 of the outer mesh is 3.9749 lGI for vertex number 6801 of the outer mesh is 3.8236 lGI for vertex number 6901 of the outer mesh is 3.7414 lGI for vertex number 7001 of the outer mesh is 3.6489 lGI for vertex number 7101 of the outer mesh is 2.6317 lGI for vertex number 7201 of the outer mesh is 2.9234 lGI for vertex number 7301 of the outer mesh is 3.6861 lGI for vertex number 7401 of the outer mesh is 3.7766 lGI for vertex number 7501 of the outer mesh is 2.5677 lGI for vertex number 7601 of the outer mesh is 3.6942 lGI for vertex number 7701 of the outer mesh is 3.6513 lGI for vertex number 7801 of the outer mesh is 3.776 lGI for vertex number 7901 of the outer mesh is 2.6589 lGI for vertex number 8001 of the outer mesh is 3.7361 lGI for vertex number 8101 of the outer mesh is 3.548 lGI for vertex number 8201 of the outer mesh is 3.7267 lGI for vertex number 8301 of the outer mesh is 2.3 lGI for vertex number 8401 of the outer mesh is 3.1861 lGI for vertex number 8501 of the outer mesh is 3.7154 lGI for vertex number 8601 of the outer mesh is 3.79 lGI for vertex number 8701 of the outer mesh is 2.3117 lGI for vertex number 8801 of the outer mesh is 3.6461 lGI for vertex number 8901 of the outer mesh is 4.6229 lGI for vertex number 9001 of the outer mesh is 3.0553 lGI for vertex number 9101 of the outer mesh is 4.1117 lGI for vertex number 9201 of the outer mesh is 3.7245 lGI for vertex number 9301 of the outer mesh is 3.5235 lGI for vertex number 9401 of the outer mesh is 4.3079 lGI for vertex number 9501 of the outer mesh is 3.6206 lGI for vertex number 9601 of the outer mesh is 3.6794 lGI for vertex number 9701 of the outer mesh is 3.6459 lGI for vertex number 9801 of the outer mesh is 2.7804 lGI for vertex number 9901 of the outer mesh is 3.0153 lGI for vertex number 10001 of the outer mesh is 3.918 ratio saved at 10001 lGI for vertex number 10101 of the outer mesh is 3.6242 lGI for vertex number 10201 of the outer mesh is 2.8643 lGI for vertex number 10301 of the outer mesh is 3.3512 lGI for vertex number 10401 of the outer mesh is 2.4464 lGI for vertex number 10501 of the outer mesh is 3.4199 lGI for vertex number 10601 of the outer mesh is 2.9497 lGI for vertex number 10701 of the outer mesh is 3.4625 lGI for vertex number 10801 of the outer mesh is 4.0566 lGI for vertex number 10901 of the outer mesh is 3.1369 lGI for vertex number 11001 of the outer mesh is 2.8311 lGI for vertex number 11101 of the outer mesh is 3.6498 lGI for vertex number 11201 of the outer mesh is 3.9703 lGI for vertex number 11301 of the outer mesh is 3.2186 lGI for vertex number 11401 of the outer mesh is 2.5889 lGI for vertex number 11501 of the outer mesh is 3.508 lGI for vertex number 11601 of the outer mesh is 3.3933 lGI for vertex number 11701 of the outer mesh is 3.4887 lGI for vertex number 11801 of the outer mesh is 2.7988 lGI for vertex number 11901 of the outer mesh is 3.084 lGI for vertex number 12001 of the outer mesh is 2.4341 lGI for vertex number 12101 of the outer mesh is 2.769 lGI for vertex number 12201 of the outer mesh is 2.7035 lGI for vertex number 12301 of the outer mesh is 3.3494 lGI for vertex number 12401 of the outer mesh is 3.3672 lGI for vertex number 12501 of the outer mesh is 2.2745 lGI for vertex number 12601 of the outer mesh is 2.9699 lGI for vertex number 12701 of the outer mesh is 3.4066 lGI for vertex number 12801 of the outer mesh is 3.5253 lGI for vertex number 12901 of the outer mesh is 3.533 lGI for vertex number 13001 of the outer mesh is 4.2313 lGI for vertex number 13101 of the outer mesh is 3.7209 lGI for vertex number 13201 of the outer mesh is 3.7854 lGI for vertex number 13301 of the outer mesh is 3.6582 lGI for vertex number 13401 of the outer mesh is 4.3252 lGI for vertex number 13501 of the outer mesh is 2.9102 lGI for vertex number 13601 of the outer mesh is 2.5187 lGI for vertex number 13701 of the outer mesh is 3.5778 lGI for vertex number 13801 of the outer mesh is 4.3793 lGI for vertex number 13901 of the outer mesh is 3.4538 lGI for vertex number 14001 of the outer mesh is 2.8953 lGI for vertex number 14101 of the outer mesh is 2.5404 lGI for vertex number 14201 of the outer mesh is 4.0296 lGI for vertex number 14301 of the outer mesh is 3.6576 lGI for vertex number 14401 of the outer mesh is 3.6955 lGI for vertex number 14501 of the outer mesh is 3.3734 lGI for vertex number 14601 of the outer mesh is 4.0163 lGI for vertex number 14701 of the outer mesh is 3.4168 lGI for vertex number 14801 of the outer mesh is 2.509 lGI for vertex number 14901 of the outer mesh is 3.4713 lGI for vertex number 15001 of the outer mesh is 3.8092 lGI for vertex number 15101 of the outer mesh is 3.6424 lGI for vertex number 15201 of the outer mesh is 2.7155 lGI for vertex number 15301 of the outer mesh is 3.2323 lGI for vertex number 15401 of the outer mesh is 2.9276 lGI for vertex number 15501 of the outer mesh is 3.2988 lGI for vertex number 15601 of the outer mesh is 3.7966 lGI for vertex number 15701 of the outer mesh is 3.4872 lGI for vertex number 15801 of the outer mesh is 3.6459 lGI for vertex number 15901 of the outer mesh is 2.673 lGI for vertex number 16001 of the outer mesh is 4.0605 lGI for vertex number 16101 of the outer mesh is 3.8327 lGI for vertex number 16201 of the outer mesh is 3.3198 lGI for vertex number 16301 of the outer mesh is 3.6638 lGI for vertex number 16401 of the outer mesh is 3.5291 lGI for vertex number 16501 of the outer mesh is 2.824 lGI for vertex number 16601 of the outer mesh is 3.5009 lGI for vertex number 16701 of the outer mesh is 3.7521 lGI for vertex number 16801 of the outer mesh is 3.2758 lGI for vertex number 16901 of the outer mesh is 2.5671 lGI for vertex number 17001 of the outer mesh is 3.5944 lGI for vertex number 17101 of the outer mesh is 2.9951 lGI for vertex number 17201 of the outer mesh is 3.1025 lGI for vertex number 17301 of the outer mesh is 2.7914 lGI for vertex number 17401 of the outer mesh is 3.5333 lGI for vertex number 17501 of the outer mesh is 2.8807 lGI for vertex number 17601 of the outer mesh is 3.1176 lGI for vertex number 17701 of the outer mesh is 2.6856 lGI for vertex number 17801 of the outer mesh is 3.5554 lGI for vertex number 17901 of the outer mesh is 3.5781 lGI for vertex number 18001 of the outer mesh is 3.7167 lGI for vertex number 18101 of the outer mesh is 3.0406 lGI for vertex number 18201 of the outer mesh is 3.1249 lGI for vertex number 18301 of the outer mesh is 3.6574 lGI for vertex number 18401 of the outer mesh is 3.0199 lGI for vertex number 18501 of the outer mesh is 3.0554 lGI for vertex number 18601 of the outer mesh is 3.2617 lGI for vertex number 18701 of the outer mesh is 3.6774 lGI for vertex number 18801 of the outer mesh is 3.6424 lGI for vertex number 18901 of the outer mesh is 2.7444 lGI for vertex number 19001 of the outer mesh is 2.9871 lGI for vertex number 19101 of the outer mesh is 3.7914 lGI for vertex number 19201 of the outer mesh is 3.478 lGI for vertex number 19301 of the outer mesh is 2.7021 lGI for vertex number 19401 of the outer mesh is 3.0553 lGI for vertex number 19501 of the outer mesh is 3.7508 lGI for vertex number 19601 of the outer mesh is 3.3896 lGI for vertex number 19701 of the outer mesh is 2.187 lGI for vertex number 19801 of the outer mesh is 3.4487 lGI for vertex number 19901 of the outer mesh is 3.9095 lGI for vertex number 20001 of the outer mesh is 3.5775 ratio saved at 20001 lGI for vertex number 20101 of the outer mesh is 2.398 lGI for vertex number 20201 of the outer mesh is 3.5227 lGI for vertex number 20301 of the outer mesh is 3.3581 lGI for vertex number 20401 of the outer mesh is 3.4907 lGI for vertex number 20501 of the outer mesh is 2.2858 lGI for vertex number 20601 of the outer mesh is 3.2766 lGI for vertex number 20701 of the outer mesh is 3.5062 lGI for vertex number 20801 of the outer mesh is 3.798 lGI for vertex number 20901 of the outer mesh is 4.1668 lGI for vertex number 21001 of the outer mesh is 2.9081 lGI for vertex number 21101 of the outer mesh is 3.8427 lGI for vertex number 21201 of the outer mesh is 3.9022 lGI for vertex number 21301 of the outer mesh is 3.0791 lGI for vertex number 21401 of the outer mesh is 3.0879 lGI for vertex number 21501 of the outer mesh is 3.7364 lGI for vertex number 21601 of the outer mesh is 4.1346 lGI for vertex number 21701 of the outer mesh is 3.9659 lGI for vertex number 21801 of the outer mesh is 2.1723 lGI for vertex number 21901 of the outer mesh is 3.5441 lGI for vertex number 22001 of the outer mesh is 3.5207 lGI for vertex number 22101 of the outer mesh is 2.2745 lGI for vertex number 22201 of the outer mesh is 3.058 lGI for vertex number 22301 of the outer mesh is 4.2472 lGI for vertex number 22401 of the outer mesh is 3.4353 lGI for vertex number 22501 of the outer mesh is 2.3825 lGI for vertex number 22601 of the outer mesh is 3.1532 lGI for vertex number 22701 of the outer mesh is 4.1845 lGI for vertex number 22801 of the outer mesh is 2.9318 lGI for vertex number 22901 of the outer mesh is 2.3119 lGI for vertex number 23001 of the outer mesh is 3.0417 lGI for vertex number 23101 of the outer mesh is 3.8541 lGI for vertex number 23201 of the outer mesh is 3.7383 lGI for vertex number 23301 of the outer mesh is 2.3365 lGI for vertex number 23401 of the outer mesh is 2.8398 lGI for vertex number 23501 of the outer mesh is 4.4838 lGI for vertex number 23601 of the outer mesh is 2.7808 lGI for vertex number 23701 of the outer mesh is 4.5094 lGI for vertex number 23801 of the outer mesh is 2.3556 lGI for vertex number 23901 of the outer mesh is 3.5018 lGI for vertex number 24001 of the outer mesh is 3.8178 lGI for vertex number 24101 of the outer mesh is 4.4646 lGI for vertex number 24201 of the outer 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outer mesh is 3.1124 lGI for vertex number 26101 of the outer mesh is 3.8333 lGI for vertex number 26201 of the outer mesh is 4.242 lGI for vertex number 26301 of the outer mesh is 2.5815 lGI for vertex number 26401 of the outer mesh is 2.7128 lGI for vertex number 26501 of the outer mesh is 2.1674 lGI for vertex number 26601 of the outer mesh is 2.895 lGI for vertex number 26701 of the outer mesh is 2.2993 lGI for vertex number 26801 of the outer mesh is 2.7674 lGI for vertex number 26901 of the outer mesh is 3.2626 lGI for vertex number 27001 of the outer mesh is 2.4248 lGI for vertex number 27101 of the outer mesh is 3.115 lGI for vertex number 27201 of the outer mesh is 2.3129 lGI for vertex number 27301 of the outer mesh is 2.5359 lGI for vertex number 27401 of the outer mesh is 3.1575 lGI for vertex number 27501 of the outer mesh is 2.4265 lGI for vertex number 27601 of the outer mesh is 2.6444 lGI for vertex number 27701 of the outer mesh is 2.1795 lGI for vertex number 27801 of the outer mesh is 2.8287 lGI for vertex number 27901 of the outer mesh is 2.0826 lGI for vertex number 28001 of the outer mesh is 3.5072 lGI for vertex number 28101 of the outer mesh is 4.3196 lGI for vertex number 28201 of the outer mesh is 2.6976 lGI for vertex number 28301 of the outer mesh is 3.2689 lGI for vertex number 28401 of the outer mesh is 3.872 lGI for vertex number 28501 of the outer mesh is 4.4159 lGI for vertex number 28601 of the outer mesh is 2.1267 lGI for vertex number 28701 of the outer mesh is 2.7495 lGI for vertex number 28801 of the outer mesh is 3.1679 lGI for vertex number 28901 of the outer mesh is 3.0481 lGI for vertex number 29001 of the outer mesh is 5.3149 lGI for vertex number 29101 of the outer mesh is 2.2725 lGI for vertex number 29201 of the outer mesh is 3.2446 lGI for vertex number 29301 of the outer mesh is 2.6018 lGI for vertex number 29401 of the outer mesh is 4.2044 lGI for vertex number 29501 of the outer mesh is 4.1071 lGI for vertex number 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of the outer mesh is 4.8322 lGI for vertex number 36801 of the outer mesh is 2.3596 lGI for vertex number 36901 of the outer mesh is 3.3132 lGI for vertex number 37001 of the outer mesh is 2.1935 lGI for vertex number 37101 of the outer mesh is 6.1425 lGI for vertex number 37201 of the outer mesh is 1.9557 lGI for vertex number 37301 of the outer mesh is 2.7687 lGI for vertex number 37401 of the outer mesh is 4.2492 lGI for vertex number 37501 of the outer mesh is 4.212 lGI for vertex number 37601 of the outer mesh is 2.1632 lGI for vertex number 37701 of the outer mesh is 2.4105 lGI for vertex number 37801 of the outer mesh is 3.9884 lGI for vertex number 37901 of the outer mesh is 2.6349 lGI for vertex number 38001 of the outer mesh is 2.0938 lGI for vertex number 38101 of the outer mesh is 2.3583 lGI for vertex number 38201 of the outer mesh is 2.2873 lGI for vertex number 38301 of the outer mesh is 2.4118 lGI for vertex number 38401 of the outer mesh is 5.6489 lGI for vertex number 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outer mesh is 4.7754 lGI for vertex number 43901 of the outer mesh is 5.2023 lGI for vertex number 44001 of the outer mesh is 2.1216 lGI for vertex number 44101 of the outer mesh is 2.3067 lGI for vertex number 44201 of the outer mesh is 4.1847 lGI for vertex number 44301 of the outer mesh is 5.1905 lGI for vertex number 44401 of the outer mesh is 2.1055 lGI for vertex number 44501 of the outer mesh is 2.3427 lGI for vertex number 44601 of the outer mesh is 4.0479 lGI for vertex number 44701 of the outer mesh is 3.7137 lGI for vertex number 44801 of the outer mesh is 1.9326 lGI for vertex number 44901 of the outer mesh is 2.138 lGI for vertex number 45001 of the outer mesh is 3.5874 lGI for vertex number 45101 of the outer mesh is 4.7959 lGI for vertex number 45201 of the outer mesh is 5.0469 lGI for vertex number 45301 of the outer mesh is 2.2106 lGI for vertex number 45401 of the outer mesh is 2.7011 lGI for vertex number 45501 of the outer mesh is 4.3243 lGI for vertex number 45601 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number 49201 of the outer mesh is 3.7165 lGI for vertex number 49301 of the outer mesh is 4.5005 lGI for vertex number 49401 of the outer mesh is 2.6615 lGI for vertex number 49501 of the outer mesh is 2.2812 lGI for vertex number 49601 of the outer mesh is 3.8441 lGI for vertex number 49701 of the outer mesh is 4.2152 lGI for vertex number 49801 of the outer mesh is 2.1826 lGI for vertex number 49901 of the outer mesh is 3.0161 lGI for vertex number 50001 of the outer mesh is 3.3025 ratio saved at 50001 lGI for vertex number 50101 of the outer mesh is 2.1334 lGI for vertex number 50201 of the outer mesh is 2.3349 lGI for vertex number 50301 of the outer mesh is 3.3146 lGI for vertex number 50401 of the outer mesh is 3.2679 lGI for vertex number 50501 of the outer mesh is 1.8845 lGI for vertex number 50601 of the outer mesh is 2.3836 lGI for vertex number 50701 of the outer mesh is 2.6029 lGI for vertex number 50801 of the outer mesh is 3.6611 lGI for vertex number 50901 of the outer mesh is 2.5469 lGI for vertex number 51001 of the outer mesh is 2.2766 lGI for vertex number 51101 of the outer mesh is 3.6394 lGI for vertex number 51201 of the outer mesh is 2.1751 lGI for vertex number 51301 of the outer mesh is 2.2654 lGI for vertex number 51401 of the outer mesh is 3.7443 lGI for vertex number 51501 of the outer mesh is 4.3881 lGI for vertex number 51601 of the outer mesh is 2.2113 lGI for vertex number 51701 of the outer mesh is 2.2426 lGI for vertex number 51801 of the outer mesh is 3.4041 lGI for vertex number 51901 of the outer mesh is 2.1244 lGI for vertex number 52001 of the outer mesh is 2.2315 lGI for vertex number 52101 of the outer mesh is 3.1797 lGI for vertex number 52201 of the outer mesh is 3.1445 lGI for vertex number 52301 of the outer mesh is 2.2853 lGI for vertex number 52401 of the outer mesh is 2.2626 lGI for vertex number 52501 of the outer mesh is 3.5347 lGI for vertex number 52601 of the outer mesh is 4.4636 lGI for vertex number 52701 of the outer mesh is 2.1333 lGI for vertex number 52801 of the outer mesh is 2.7544 lGI for vertex number 52901 of the outer mesh is 2.8624 lGI for vertex number 53001 of the outer mesh is 2.5054 lGI for vertex number 53101 of the outer mesh is 2.2574 lGI for vertex number 53201 of the outer mesh is 2.6526 lGI for vertex number 53301 of the outer mesh is 2.3343 lGI for vertex number 53401 of the outer mesh is 2.2003 lGI for vertex number 53501 of the outer mesh is 3.494 lGI for vertex number 53601 of the outer mesh is 2.1135 lGI for vertex number 53701 of the outer mesh is 2.4183 lGI for vertex number 53801 of the outer mesh is 3.1584 lGI for vertex number 53901 of the outer mesh is 2.5931 lGI for vertex number 54001 of the outer mesh is 2.5283 lGI for vertex number 54101 of the outer mesh is 2.4459 lGI for vertex number 54201 of the outer mesh is 3.4774 lGI for vertex number 54301 of the outer mesh is 2.8822 lGI for vertex number 54401 of the outer mesh is 1.9759 lGI for vertex number 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number 56301 of the outer mesh is 2.9507 lGI for vertex number 56401 of the outer mesh is 2.3293 lGI for vertex number 56501 of the outer mesh is 2.0394 lGI for vertex number 56601 of the outer mesh is 3.5118 lGI for vertex number 56701 of the outer mesh is 1.9269 lGI for vertex number 56801 of the outer mesh is 1.8377 lGI for vertex number 56901 of the outer mesh is 2.5931 lGI for vertex number 57001 of the outer mesh is 3.0537 lGI for vertex number 57101 of the outer mesh is 2.2707 lGI for vertex number 57201 of the outer mesh is 2.4275 lGI for vertex number 57301 of the outer mesh is 3.3016 lGI for vertex number 57401 of the outer mesh is 2.1872 lGI for vertex number 57501 of the outer mesh is 2.1717 lGI for vertex number 57601 of the outer mesh is 1.9944 lGI for vertex number 57701 of the outer mesh is 2.6176 lGI for vertex number 57801 of the outer mesh is 1.8526 lGI for vertex number 57901 of the outer mesh is 1.949 lGI for vertex number 58001 of the outer mesh is 2.5703 lGI for vertex number 58101 of the outer mesh is 2.2716 lGI for vertex number 58201 of the outer mesh is 3.1216 lGI for vertex number 58301 of the outer mesh is 2.4703 lGI for vertex number 58401 of the outer mesh is 2.3678 lGI for vertex number 58501 of the outer mesh is 2.2119 lGI for vertex number 58601 of the outer mesh is 2.1323 lGI for vertex number 58701 of the outer mesh is 1.8836 lGI for vertex number 58801 of the outer mesh is 2.4629 lGI for vertex number 58901 of the outer mesh is 2.2554 lGI for vertex number 59001 of the outer mesh is 1.9088 lGI for vertex number 59101 of the outer mesh is 2.4628 lGI for vertex number 59201 of the outer mesh is 2.065 lGI for vertex number 59301 of the outer mesh is 2.2965 lGI for vertex number 59401 of the outer mesh is 2.8086 lGI for vertex number 59501 of the outer mesh is 2.2631 lGI for vertex number 59601 of the outer mesh is 1.9968 lGI for vertex number 59701 of the outer mesh is 2.6514 lGI for vertex number 59801 of the outer mesh is 1.8021 lGI for vertex number 59901 of the outer mesh is 2.7243 lGI for vertex number 60001 of the outer mesh is 2.6345 ratio saved at 60001 lGI for vertex number 60101 of the outer mesh is 2.2068 lGI for vertex number 60201 of the outer mesh is 2.5803 lGI for vertex number 60301 of the outer mesh is 1.8587 lGI for vertex number 60401 of the outer mesh is 2.155 lGI for vertex number 60501 of the outer mesh is 2.182 lGI for vertex number 60601 of the outer mesh is 2.579 lGI for vertex number 60701 of the outer mesh is 2.2364 lGI for vertex number 60801 of the outer mesh is 2.8205 lGI for vertex number 60901 of the outer mesh is 2.509 lGI for vertex number 61001 of the outer mesh is 2.3676 lGI for vertex number 61101 of the outer mesh is 2.4269 lGI for vertex number 61201 of the outer mesh is 2.2409 lGI for vertex number 61301 of the outer mesh is 2.6343 lGI for vertex number 61401 of the outer mesh is 2.4243 lGI for vertex number 61501 of the outer mesh is 2.0537 lGI for vertex number 61601 of the outer mesh is 2.3022 lGI for vertex number 61701 of the outer mesh is 2.0239 lGI for vertex number 61801 of the outer mesh is 2.1915 lGI for vertex number 61901 of the outer mesh is 2.148 lGI for vertex number 62001 of the outer mesh is 2.1075 .. Almost finished .. now back-propagating values on the folded mesh .. average_lGI_over_the_hemisphere = 3.3765 DONE. deltaT = 341.6500 ================= mris_convert -c /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc lh.pial lh.pial_lgi ================= mris_convert -c /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc lh.pial lh.pial_lgi Reading in lh.pial ================= rm -Rf /scratch/juno/dal247378/batches/batch_001/sub-01EN91PG_ses-00A/surf/tmp-mris_compute_lgi-lh.pial ================= done. Start: Tue Apr 21 13:10:35 CDT 2026 End: Tue Apr 21 13:58:48 CDT 2026