Hello,

I was running recon-all on a raw T1 image with the following properties:

dimensions: 126 x 144 x 88

voxel sizes: 1.777778, 1.777778, 1.780000

Orientation: PSL

Besides the raw T1, I have other nii files with the same dimensions and orientation that I want to visualize on top of the recon-all output T1.mgz.

How can I run the same transformations (and reslicing) that were used in recon-all (from my raw nii file to T1.mgz) on the other nii files?

Thanks!

Noam