Dear Bruce,

Thank you very much for reply.

I have to link fsavarage also. Because recently I have formated my system, the link between freesurfer and fsaverage is broken.

I hope following link will be the correct one. If not please correct me.

ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage

On Wed, Nov 29, 2017 at 8:38 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

if you have two dirs, dir1 and dir2, with a set of subjects in each (subjects1 and subjects2), you would do:

cd $dir2
foreach s ($subjects1)
  ln -s $dir1/$s
end

then all your subjects will be listed in dir2

that should do the trick

On Wed, 29 Nov 2017, Ramesh Babu wrote:

Dear Bruce,

Thank for your reply. I am getting confusion in creating symlink.
ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/
ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage


Please let me know how to create symbolic link?

Thank you
Ramesh

On Tue, Nov 28, 2017 at 8:27 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
      Hi Ramesh

      probably easiest to symlink them

      cheers
      Bruce
      On Tue, 28 Nov 2017, Ramesh Babu wrote:

            Hi, I have done recon-all -all processing for 2 groups in separate subjects directories. I want to
            put all subjects in one dkirectory. Should I copy paste all subject’s folders in one directory or
            is
            there any others steps to merge?

            Thanks in advance 
            RB



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